cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0109366

Structural Basis for Resistance to Diverse Classes of NAMPT Inhibitors
Cited by: 25
Author(s): Weiru Wang, Kristi Elkins, Angela Oh, Yew Kam Ho, Jiansheng Wu, Hong Li, Yang Xiao, Mandy Kwong, Mary Coons, B. Brillantes, Elaine Cheng, Lisa Crocker, Peter S. Dragovich, Deepak Sampath, Xiaozhang Zheng, Kenneth W. Bair, Tom O’Brien, Lisa D. Belmont
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0184932

Structure of the human transcobalamin beta domain in four distinct states
Cited by: 5
Author(s): J.S. Bloch, Markus Ruetz, Bernhard Kräutler, Kaspar P. Locher
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0124330

Structural and Biochemical Analysis of Tyrosine Phosphatase Related to Biofilm Formation A (TpbA) from the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
Cited by: 11
Author(s): Kun Xu, Shanshan Li, Wen Yang, Kan Li, Yujia Bai, Yueyang Xu, Jin Jin, Yingying Wang, Mark Bartlam
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0040854

High Resolution Crystal Structure of the Endo-N-Acetyl-β-D-Glucosaminidase Responsible for the Deglycosylation of Hypocrea jecorina Cellulases
Cited by: 25
Author(s): Ingeborg Stals, Saeid Karkehabadi, Steve Kim, Michael P. Ward, Anita Van Landschoot, Bart Devreese, Mats Sandgren
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0168814

Crystal Structure of an Invasivity-Associated Domain of SdrE in S. aureus
Cited by: 4
Author(s): Miao Luo, Xiang Zhang, Shaocheng Zhang, Hongpeng Zhang, Wei Yang, Zhongliang Zhu, Ke Chen, Lei Bai, Jie Wei, Ailong Huang, Deqiang Wang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0083419

From Knock-Out Phenotype to Three-Dimensional Structure of a Promising Antibiotic Target from Streptococcus pneumoniae
Cited by: 22
Author(s): Con Dogovski, Michael A. Gorman, Natalia E. Ketaren, Judyta Praszkier, Leanne M. Zammit, Haydyn D. T. Mertens, Gary Bryant, Jiyeon Yang, Michael D. W. Griffin, F. Grant Pearce, Juliet A. Gerrard, Geoffrey B. Jameson, Michael W. Parker, Roy M. Robins-Browne, Matthew A. Perugini
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0067409

Crystal Structures of the Sec1/Munc18 (SM) Protein Vps33, Alone and Bound to the Homotypic Fusion and Vacuolar Protein Sorting (HOPS) Subunit Vps16*
Cited by: 51
Author(s): Richard W. Baker, Philip D. Jeffrey, Frederick M. Hughson
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0132004

Potent and Selective Triazole-Based Inhibitors of the Hypoxia-Inducible Factor Prolyl-Hydroxylases with Activity in the Murine Brain
Cited by: 50
Author(s): Mun Chiang Chan, Onur Atasoylu, Emma J. Hodson, Anthony Tumber, Ivanhoe K. H. Leung, Rasheduzzaman Chowdhury, Verónica Gómez-Pérez, Marina Demetriades, Anna M. Rydzik, James P. Holt‐Martyn, Ya-Min Tian, Tammie Bishop, Timothy D. W. Claridge, Akane Kawamura, Christopher W. Pugh, Peter J. Ratcliffe, Christopher J. Schofield
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0012544

Structural and Mutational Analysis of Functional Differentiation between Synaptotagmins-1 and -7
Cited by: 27
Author(s): Mingshan Xue, T.K. Craig, Ok Ho Shin, Liyi Li, Chad A. Brautigam, Diana R. Tomchick, Thomas C. Südhof, Christian Rosenmund, Josep Rizo
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0027466

Structure of the Bro1 Domain Protein BROX and Functional Analyses of the ALIX Bro1 Domain in HIV-1 Budding
Cited by: 27
Author(s): Qianting Zhai, Michael B. Landesman, Howard Robinson, Wesley I. Sundquist, Christopher P. Hill
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0008028

Crystal Structure of Bfr A from Mycobacterium tuberculosis: Incorporation of Selenomethionine Results in Cleavage and Demetallation of Haem
Cited by: 36
Author(s): Vibha Gupta, Rakesh K. Gupta, Garima Khare, Dinakar M. Salunke, Anil K. Tyagi
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0048301

Crystal Structures of Lysine-Preferred Racemases, the Non-Antibiotic Selectable Markers for Transgenic Plants
Cited by: 13
Author(s): Hsin‐Mao Wu, Yi‐Chia Kuan, Chia-Han Chu, Wen-Hwei Hsu, Wen-Ching Wang
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0060445

Crystal Structure of KLHL3 in Complex with Cullin3
Cited by: 59
Author(s): Alan X. Ji, Gilbert G. Privé
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0177097

DNA recognition by an RNA-guided bacterial Argonaute
Cited by: 43
Author(s): Kevin W. Doxzen, Jennifer A. Doudna
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0041894

Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis
Cited by: 4
Author(s): Neelanjana Janardan, R.K. Harijan, R.K. Wierenga, M.R.N. Murthy
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0033643

Structural Insights into Human Peroxisome Proliferator Activated Receptor Delta (PPAR-Delta) Selective Ligand Binding
Cited by: 43
Author(s): Fernanda Aparecida Heleno Batista, D.B.B. Trivella, Amanda Bernardes, Joyce Gratieri, Paulo Sérgio Lopes de Oliveira, Ana Carolina M. Figueira, Paul Webb, Igor Polikarpov
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0050329

NADP+ Binding to the Regulatory Subunit of Methionine Adenosyltransferase II Increases Intersubunit Binding Affinity in the Hetero-Trimer
Cited by: 18
Author(s): Beatriz González, Federico Garrido, Rebeca Ortega, Marta Martı́nez-Júlvez, Ainhoa Revilla-Guarinos, Yolanda Pérez-Pertejo, Adrián Velázquez‐Campoy, Julia Sanz‐Aparicio, Marı́a A. Pajares
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0161020

Streptococcus pneumoniae TIGR4 Flavodoxin: Structural and Biophysical Characterization of a Novel Drug Target
Cited by: 12
Author(s): Ángela Rodríguez-Cárdenas, Adriana L. Rojas, María Conde-Giménez, Adrián Velázquez‐Campoy, R. Hurtado‐Guerrero, Javier Sancho
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0208850

Structural and functional insight into serine hydroxymethyltransferase from Helicobacter pylori
Cited by: 6
Author(s): A. Sodolescu, Cyril Dian, Laurent Terradot, Latifa Bouzhir-Sima, Roxane Lestini, Hannu Myllykallio, Stéphane Skouloubris, Ursula Liebl
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0149113

Structural Study of the HD-PTP Bro1 Domain in a Complex with the Core Region of STAM2, a Subunit of ESCRT-0
Cited by: 20
Author(s): Juhyeon Lee, Kyoung-Jin Oh, Dong Hoon Lee, Bo Yeon Kim, Joon Sig Choi, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0086010

Crystallographic and Biochemical Analysis of the Mouse Poly(ADP-Ribose) Glycohydrolase
Cited by: 23
Author(s): Zhizhi Wang, Jean Philippe Gagné, Guy G. Poirier, Wenqing Xu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0019245

LILRA3 Binds Both Classical and Non-Classical HLA Class I Molecules but with Reduced Affinities Compared to LILRB1/LILRB2: Structural Evidence
Cited by: 37
Author(s): Myongchol Ryu, Yong Chen, Jianxun Qi, Jun Li, Zheng Fan, Gol Nam, Yi Shi, Hao Cheng, George F. Gao
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0118683

Lpg0393 of Legionella pneumophila Is a Guanine-Nucleotide Exchange Factor for Rab5, Rab21 and Rab22
Cited by: 15
Author(s): Youn Soo Sohn, Hang‐Sik Shin, Wei Sun Park, Jianning Ge, Chan-Hee Kim, Bok Luel Lee, Won Do Heo, Jae U. Jung, Daniel J. Rigden, Byung‐Ha Oh
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0060649

Homopiperazine Derivatives as a Novel Class of Proteasome Inhibitors with a Unique Mode of Proteasome Binding
Cited by: 13
Author(s): Jiro Kikuchi, Naoya Shibayama, Satoshi Yamada, Taeko Wada, Masaharu Nobuyoshi, Tohru Izumi, Miyuki Akutsu, Yasuhiko Kano, Kanako Sugiyama, Mio Ohki, Sam-Yong Park, Yusuke Furukawa
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0118548

Structural and Functional Investigation of Flavin Binding Center of the NqrC Subunit of Sodium-Translocating NADH:Quinone Oxidoreductase from Vibrio harveyi
Cited by: 14
Author(s): Valentin Borshchevskiy, Ekaterina Round, Yulia V. Bertsova, Vitaly Polovinkin, Ivan Gushchin, Andrii Ishchenko, Kirill Kovalev, Alexey Mishin, Г.С. Качалова, А. Н. Попов, Alexander V. Bogachev, Valentin Gordeliy
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0067214

Identification of a Novel TGF-β-Binding Site in the Zona Pellucida C-terminal (ZP-C) Domain of TGF-β-Receptor-3 (TGFR-3)
Cited by: 32
Author(s): Uschi Diestel, Marcus Resch, Kathrin Meinhardt, Sigrid Weiler, Tina V. Hellmann, Thomas D. Mueller, J. Curtis Nickel, Jutta Eichler, Yves A. Muller
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0131523

Evidence for the Dimerization-Mediated Catalysis of Methionine Sulfoxide Reductase A from Clostridium oremlandii
Cited by: 6
Author(s): Eun Hye Lee, Kitaik Lee, Geun Hee Kwak, Yeon Seung Park, Kong Joo Lee, Kwang Yeon Hwang, Hwa Young Kim
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0221975

Crystal structure of L-aspartate aminotransferase from Schizosaccharomyces pombe
Cited by: 5
Author(s): Soo Yeon Jeong, Hyeonseok Jin, Jeong Ho Chang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0199942

Crystal structure of the C-terminal four-helix bundle of the potassium channel KCa3.1
Cited by: 5
Author(s): Tianyang Ji, Senena Corbalán-Garcı́a, Stevan R. Hubbard
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0097475

Crystal Structure of the Open State of the Neisseria gonorrhoeae MtrE Outer Membrane Channel
Cited by: 49
Author(s): Hanlun Lei, Tsung‐Han Chou, Chih‐Chia Su, Jani Reddy Bolla, Nitin Kumar, Abhijith Radhakrishnan, Feng Long, Jared A. Delmar, V. L. Sylvia, Kanagalaghatta R. Rajashankar, William M. Shafer, Edward Yu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0020505

Circular Permutation of Red Fluorescent Proteins
Cited by: 32
Author(s): Bo Shui, Qi Wang, Frank Lee, Laura J. Byrnes, Dmitriy M. Chudakov, Sergey Lukyanov, Holger Sondermann, Michael I. Kotlikoff
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0044211

Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease
Cited by: 53
Author(s): Kathryn M. Hastie, Liam B. King, Michelle Zandonatti, Erica Ollmann Saphire
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0149846

Crystal Structure of Alcohol Oxidase from Pichia pastoris
Cited by: 38
Author(s): Christian A. Koch, Piotr Neumann, Oliver Valerius, Ivo Feußner, Ralf Ficner
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0063047

N-Terminal Helix-Cap in α-Helix 2 Modulates β-State Misfolding in Rabbit and Hamster Prion Proteins
Cited by: 18
Author(s): Braden Sweeting, Eric D. Brown, Mashiat Khan, Avijit Chakrabartty, E.F. Pai
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0067901

Function and X-Ray crystal structure of Escherichia coli YfdE
Cited by: 11
Author(s): E.A. Mullins, Kelly L. Sullivan, T.J. Kappock
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0187295

Crystal structure of dipeptidyl peptidase III from the human gut symbiont Bacteroides thetaiotaomicron
Cited by: 14
Author(s): Igor Sabljić, Nevenka Meštrović, Bojana Vukelić, Peter Macheroux, Karl Gruber, Marija Luić, Marija Abramić
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0125946

Structural Basis Underlying the Binding Preference of Human Galectins-1, -3 and -7 for Galβ1-3/4GlcNAc
Cited by: 36
Author(s): T.J. Hsieh, Hong-Shiang Lin, Zhijay Tu, Bo-Shun Huang, Shang-Chuen Wu, Chun‐Hung Lin
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0074748

Structure of the NheA Component of the Nhe Toxin from Bacillus cereus: Implications for Function
Cited by: 57
Author(s): Magdah Ganash, Danh Phung, Svetlana E. Sedelnikova, Toril Lindbäck, Per Einar Granum, Peter J. Artymiuk
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0039688

Dimerization and Heme Binding Are Conserved in Amphibian and Starfish Homologues of the microRNA Processing Protein DGCR8
Cited by: 20
Author(s): Rachel Senturia, Arthur Laganowsky, Ian Barr, Brooke D. Scheidemantle, Feng Guo
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0211432

R pyocin tail fiber structure reveals a receptor-binding domain with a lectin fold
Cited by: 20
Author(s): Adam J. Salazar, Mukul Sherekar, Jennifer Tsai, James C. Sacchettini
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0084973

Comparative Structural and Functional Analysis of Orthomyxovirus Polymerase Cap-Snatching Domains
Cited by: 17
Author(s): Delphine Guilligay, Jan Kadlec, Thibaut Crépin, T. Lunardi, Denis Bouvier, Georg Kochs, Rob W.H. Ruigrok, Stephen Cusack
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0214481

Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com
Cited by: 4
Author(s): Martyna Nowacka, Humberto Fernandes, Agnieszka Kiliszek, Agata Bernat, Grzegorz Łach, Janusz M. Bujnicki
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0122447

The 1.7 Å X-Ray Crystal Structure of the Porcine Factor VIII C2 Domain and Binding Analysis to Anti-Human C2 Domain Antibodies and Phospholipid Surfaces
Cited by: 8
Author(s): Caileen M. Brison, Steven M. Mullen, Michelle E. Wuerth, Kira A. Podolsky, M. Katherine Cook, Jacob Herman, Justin D. Walter, Shannon L. Meeks, P. Clint Spiegel
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0103650

Chemically Modified Peptide Scaffolds Target the CFTR-Associated Ligand PDZ Domain
Cited by: 16
Author(s): J.F. Amacher, Ruizhi Zhao, Mark R. Spaller, Dean R. Madden
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0206589

A comparative structural analysis of the surface properties of asco-laccases
Cited by: 19
Author(s): Heidi A. Ernst, Lise J. Jørgensen, Christian Bukh, Klaus Piontek, Dietmar A. Plattner, Lars Østergaard, Sine Larsen, Morten J. Bjerrum
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0086651

The Neutron Structure of Urate Oxidase Resolves a Long-Standing Mechanistic Conundrum and Reveals Unexpected Changes in Protonation
Cited by: 25
Author(s): Esko Oksanen, Matthew P. Blakeley, Mohamed El-Hajji, Ulf Ryde, Monika Budayova‐Spano
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0043045

Structure and Flexibility of the C-Ring in the Electromotor of Rotary FoF1-ATPase of Pea Chloroplasts
Cited by: 27
Author(s): Shai Saroussi, Maya Schushan, Nir Ben‐Tal, Wolfgang Junge, Nathan Nelson
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0056363

Using Haloarcula marismortui Bacteriorhodopsin as a Fusion Tag for Enhancing and Visible Expression of Integral Membrane Proteins in Escherichia coli
Cited by: 39
Author(s): Min Hsu, Tsung Fu Yu, Chia Cheng Chou, Hsu Yuan Fu, Chii‐Shen Yang, Andrew H.J. Wang
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0161022

The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology
Cited by: 14
Author(s): Chad A. Brautigam, Ranjit K. Deka, Wei Z. Liu, Michael V. Norgard
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0034202

Structural Insights into TIR Domain Specificity of the Bridging Adaptor Mal in TLR4 Signaling
Cited by: 57
Author(s): Zhijie Lin, Jing Lü, Weihong Zhou, Yuequan Shen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0062446

Tetramerization Reinforces the Dimer Interface of MnSOD
Cited by: 14
Author(s): Yinghong Sheng, Armando Durazo, Mikhail Schumacher, Edith Butler Gralla, Duilio Cascio, Diane E. Cabelli, Joan Selverstone Valentine
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0097903

Crystal Structure of the Neisseria gonorrhoeae MtrD Inner Membrane Multidrug Efflux Pump
Cited by: 64
Author(s): Jani Reddy Bolla, Chih‐Chia Su, V. L. Sylvia, Abhijith Radhakrishnan, Nitin Kumar, Feng Long, Tsung‐Han Chou, Jared A. Delmar, Hanlun Lei, Kanagalaghatta R. Rajashankar, William M. Shafer, Edward Yu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0127149

Structural Basis for the Inhibition of Helicobacter pylori α-Carbonic Anhydrase by Sulfonamides
Cited by: 41
Author(s): Joyanta K. Modakh, Yu C. Liu, Mayra A. Machuca, Claudiu T. Supuran, Anna Roujeinikova
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0032033

Structural and Functional Analysis of Validoxylamine A 7′-phosphate Synthase ValL Involved in Validamycin A Biosynthesis
Cited by: 16
Author(s): Lina Zheng, Xiang Zhou, Huaidong Zhang, Xiaofeng Ji, Lei Li, Lin Huang, Linquan Bai, Houjin Zhang
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0124056

The Crystal Structure of D-Threonine Aldolase from Alcaligenes xylosoxidans Provides Insight into a Metal Ion Assisted PLP-Dependent Mechanism
Cited by: 17
Author(s): M. Uhl, Gustav Oberdorfer, Georg Steinkellner, Lina Riegler-Berket, Daniel Mink, Friso van Assema, Martin Schürmann, Karl Gruber
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0158749

Crystal Structure of Bacillus subtilis Cysteine Desulfurase SufS and Its Dynamic Interaction with Frataxin and Scaffold Protein SufU
Cited by: 25
Author(s): Bastian Blauenburg, Andreas Mielcarek, Florian Altegoer, Christopher D. Fage, Uwe Linne, Gert Bange, Mohamed A. Marahiel
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0038723

Structure of a Murine Norovirus NS6 Protease-Product Complex Revealed by Adventitious Crystallisation
Cited by: 25
Author(s): Eoin N Leen, Gabriela Baeza, Stephen Curry
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0015345

A Novel Dimeric Inhibitor Targeting Beta2GPI in Beta2GPI/Antibody Complexes Implicated in Antiphospholipid Syndrome
Cited by: 28
Author(s): Alexey Kolyada, Changjin Lee, Alfredo De Biasio, Natalia Beglova
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0048427

Structure-Based Engineering Increased the Catalytic Turnover Rate of a Novel Phenazine Prenyltransferase
Cited by: 23
Author(s): Georg Zocher, Orwah Saleh, Joel B. Heim, D.A. Herbst, Lutz Heide, Thilo Stehle
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0019521

Comparative Structural Analysis of Lipid Binding START Domains
Cited by: 114
Author(s): A.G. Thorsell, Wen‐Hwa Lee, C. Persson, M.I. Siponen, M.E. Nilsson, R.D. Busam, T. Kotenyova, H. Schüler, L. Lehtiö
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0009222

Structural Ordering of Disordered Ligand-Binding Loops of Biotin Protein Ligase into Active Conformations as a Consequence of Dehydration
Cited by: 28
Author(s): Vibha Gupta, Rakesh K. Gupta, Garima Khare, Dinakar M. Salunke, Avadhesha Surolia, Anil K. Tyagi
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0122466

Rheostat Re-Wired: Alternative Hypotheses for the Control of Thioredoxin Reduction Potentials
Cited by: 13
Author(s): Kathryn D. Bewley, Mishtu Dey, Rebekah E. Bjork, Sangha Mitra, Sarah E. Chobot, Catherine L. Drennan, Sean J. Elliott
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0163654

Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin
Cited by: 5
Author(s): Frédéric V. Stanger, Alexander Harms, Christoph Dehio, Tilman Schirmer
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0089803

Insight into Highly Conserved H1 Subtype-Specific Epitopes in Influenza Virus Hemagglutinin
Cited by: 10
Author(s): Ki Joon Cho, Kwang Won Hong, Se‐Ho Kim, Jong Hyeon Seok, Sella Kim, Jihye Lee, Xavier Saelens, Kyung Hyun Kim
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0128700

Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme
Cited by: 7
Author(s): Eva Cséfalvay, Mikalai Lapkouski, Alena Guzanová, Ladislav Cséfalvay, Tatsiana Baikova, I. A. Shevelev, Vitali Bialevich, Katsiaryna Shamayeva, Pavel Janscak, Ivana Kutá Smatanová, Santosh Panjikar, Jannette Carey, Marie Weiserová, Rüdiger Ettrich
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0080761

X-Ray Crystal Structure of the Ancestral 3-Ketosteroid Receptor–Progesterone–Mifepristone Complex Shows Mifepristone Bound at the Coactivator Binding Interface
Cited by: 10
Author(s): Jennifer K. Colucci, Eric A. Ortlund
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0116369

Structure of the SthK Carboxy-Terminal Region Reveals a Gating Mechanism for Cyclic Nucleotide-Modulated Ion Channels
Cited by: 25
Author(s): Divya Kesters, Marijke Brams, Mieke Nys, Eveline Wijckmans, Radovan Spurný, Thomas Voets, Jan Tytgat, Jana Kusch, Chris Ulens
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0021624

Stabilizing Salt-Bridge Enhances Protein Thermostability by Reducing the Heat Capacity Change of Unfolding
Cited by: 105
Author(s): Chung-Han Chan, Tian-Hu Yu, Kam‐Bo Wong
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0186642

A novel FLNC frameshift and an OBSCN variant in a family with distal muscular dystrophy
Cited by: 28
Author(s): Daniela Rossi, Johanna Palmio, Anni Evilä, Lucia Galli, Virginia Barone, Tracy A. Caldwell, Rachel A. Policke, Esraa Aldkheil, Christopher E. Berndsen, Nathan T. Wright, Edoardo Malfatti, Guy Brochier, Enrico Pierantozzi, Albena Jordanova, Velina Guergueltcheva, Norma B. Romero, Peter Hackman, B. Eymard, Bjarne Udd, Vincenzo Sorrentino
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0215140

Crystal structure of the SH3 domain of human Lyn non-receptor tyrosine kinase
Cited by: 6
Author(s): Sandra Berndt, Vsevolod V. Gurevich, T.M. Iverson
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0094369

Crystal Structure of the Shrimp Proliferating Cell Nuclear Antigen: Structural Complementarity with WSSV DNA Polymerase PIP-Box
Cited by: 11
Author(s): J.S. Carrasco-Miranda, Alonso A. López-Zavala, Aldo A. Arvizu‐Flores, Karina D. García-Orozco, V. Stojanoff, E. Rudiño-Piñera, Luis G. Brieba, Rogerio R. Sotelo‐Mundo
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0136533

Structural Analysis of the Regulatory Domain of ExsA, a Key Transcriptional Regulator of the Type Three Secretion System in Pseudomonas aeruginosa
Cited by: 10
Author(s): Manisha Shrestha, Yi Xiao, Howard Robinson, Florian D. Schubot
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0012896

Crystal Structure of the Formin mDia1 in Autoinhibited Conformation
Cited by: 41
Author(s): Takanori Otomo, Diana R. Tomchick, Takanori Otomo, Mischa Machius, Michael K. Rosen
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0010083

Shared Active Site Architecture between the Large Subunit of Eukaryotic Primase and DNA Photolyase
Cited by: 65
Author(s): Ludovic Sauguet, Sebastian Klinge, Rajika L. Perera, Joseph D. Maman, Luca Pellegrini
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0164678

Crystal Structure of Saccharomyces cerevisiae ECM4, a Xi-Class Glutathione Transferase that Reacts with Glutathionyl-(hydro)quinones
Cited by: 8
Author(s): Mathieu Schwartz, Claude Didierjean, Arnaud Hecker, Jean‐Michel Girardet, Mélanie Morel‐Rouhier, Éric Gelhaye, F. Favier
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0018570

Ferritin Structure from Mycobacterium tuberculosis: Comparative Study with Homologues Identifies Extended C-Terminus Involved in Ferroxidase Activity
Cited by: 51
Author(s): Garima Khare, Vibha Gupta, Prachi Nangpal, Rakesh K. Gupta, Nicholas K. Sauter, Anil K. Tyagi
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0164243

Structural Basis of the Heterodimer Formation between Cell Shape-Determining Proteins Csd1 and Csd2 from Helicobacter pylori
Cited by: 16
Author(s): Doo Ri An, Ha Na Im, Jun Young Jang, Hyoun Sook Kim, Jieun Kim, Hye Jin Yoon, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Soon-Jong Kim, Se Won Suh
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0094610

Steroid Receptor RNA Activator (SRA) Modification by the Human Pseudouridine Synthase 1 (hPus1p): RNA Binding, Activity, and Atomic Model
Cited by: 13
Author(s): Tiphaine Huet, François-Alexandre Miannay, Jeffrey R. Patton, Stéphane Thore
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0155396

Structural Analysis and Insights into the Oligomeric State of an Arginine-Dependent Transcriptional Regulator from Bacillus halodurans
Cited by: 3
Author(s): Young Woo Park, Joongoo Kang, Hyun Ku Yeo, Jae Young Lee
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0044850

Crystal Structure of Der f 7, a Dust Mite Allergen from Dermatophagoides farinae
Cited by: 22
Author(s): Kang Wei Tan, Chacko Jobichen, Tan Ching Ong, Yifei Gao, Yuen Sung Tiong, Kang Ning Wong, Fook Tim Chew, J. Sivaraman, Yu Keung Mok
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0071451

Structures of Streptococcus pneumoniae PiaA and Its Complex with Ferrichrome Reveal Insights into the Substrate Binding and Release of High Affinity Iron Transporters
Cited by: 24
Author(s): Cheng Wang, Qiong Li, Yong-Liang Jiang, Cong‐Zhao Zhou, Yuxing Chen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0099349

Cyanuric Acid Hydrolase from Azorhizobium caulinodans ORS 571: Crystal Structure and Insights into a New Class of Ser-Lys Dyad Proteins
Cited by: 12
Author(s): Chong-Min Kyung, Ke Shi, Jennifer L. Seffernick, Anthony G. Dodge, Lawrence P. Wackett, Hideki Aihara
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0039985

A Common Ca2+-Driven Interdomain Module Governs Eukaryotic NCX Regulation
Cited by: 35
Author(s): Moshe Giladi, Yehezkel Sasson, Xianyang Fang, Reuben Hiller, Tal Buki, Yun‐Xing Wang, Joel A. Hirsch, Daniel Khananshvili
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0056138

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases
Cited by: 18
Author(s): Maly Levy-Assaraf, Milana Voronov-Goldman, Inna Rozman Grinberg, Gloria Weiserman, Linda J. W. Shimon, Sadanari Jindou, Ilya Borovok, Bryan A. White, Edward A. Bayer, Raphael Lamed, Felix Frolow
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0117836

Essential Role of the C-Terminal Helical Domain in Active Site Formation of Selenoprotein MsrA from Clostridium oremlandii
Cited by: 2
Author(s): Eun Hye Lee, Kitaik Lee, Kwang Yeon Hwang, Hwa Young Kim
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0142107

Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module
Cited by: 6
Author(s): Huaidong Zhang, Guimin Zhang, Chaoxiang Yao, Muhammad Junaid, Zhenghui Lu, Houjin Zhang, Yanhe Ma
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0026629

A Novel Dimer-Tetramer Transition Captured by the Crystal Structure of the HIV-1 Nef
Cited by: 13
Author(s): Pankaj Singh, Gaya P. Yadav, Sudeepti Gupta, Anil Kumar Tripathi, Ravishankar Ramachandran, Raj Kamal Tripathi
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0251743

Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin
Cited by: 7
Author(s): Satoshi Inouye, Yuto Sumida, Yuri Tomabechi, Jumpei Taguchi, Mikako Shirouzu, Takamitsu Hosoya
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0196691

A new crystal form of Aspergillus oryzae catechol oxidase and evaluation of copper site structures in coupled binuclear copper enzymes
Cited by: 7
Author(s): Leena Penttinen, Chiara Rutanen, Markku Saloheimo, Kristiina Kruus, Juha Rouvinen, Nina Hakulinen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0115344

The Human Otubain2-Ubiquitin Structure Provides Insights into the Cleavage Specificity of Poly-Ubiquitin-Linkages
Cited by: 28
Author(s): Mikael Altun, Thomas S. Walter, Holger Kramer, Patrick Herr, Alexander Iphöfer, Johan Boström, Yael David, Alia Komsany, Nicola Ternette, Ami Navon, David I. Stuart, Jingshan Ren, Benedikt M. Kessler
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0025226

Structural Basis of Cooperativity in Human UDP-Glucose Dehydrogenase
Cited by: 12
Author(s): V. Rajakannan, Hui Sun Lee, Seon Ha Chong, Han Bong Ryu, Ji Young Bae, Eun Young Whang, Jae-Wan Huh, Sung Woo Cho, Lin Woo Kang, Han Choe, Robert Robinson
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0063161

Structural Insights into the UbiD Protein Family from the Crystal Structure of PA0254 from Pseudomonas aeruginosa
Cited by: 35
Author(s): Agata Jacewicz, Atsushi Izumi, Katharina Brunner, R. Schnell, Günter Schneider
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0034986

Molecular Mechanism Underlying the Interaction of Typical Sac10b Family Proteins with DNA
Cited by: 4
Author(s): Yanfeng Liu, Nan Zhang, Liu Xi, Xinquan Wang, Zhixin Wang, Yuanyuan Chen, Hongwei Yao, Meng Ge, Xian-Ming Pan
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0186286

Insights into the inhibited form of the redox-sensitive SufE-like sulfur acceptor CsdE
Cited by: 0
Author(s): Esther Peña, Juan Aranda, Miguel López-Estepa, Sara Gómez, Fernando Garcés, Miquel Coll, Francisco Fernández, Iñaki Tuñón, M. Cristina Vega
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0120467

Structural and Enzymatic Characterization of the Choline Kinase LicA from Streptococcus pneumoniae
Cited by: 11
Author(s): Lei Wang, Yong-Liang Jiang, Jing-Ren Zhang, Cong‐Zhao Zhou, Yuxing Chen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0053567

The 1.6 Å Crystal Structure of Pyranose Dehydrogenase from Agaricus meleagris Rationalizes Substrate Specificity and Reveals a Flavin Intermediate
Cited by: 42
Author(s): T.C. Tan, Oliver Spadiut, Thanyaporn Wongnate, Jeerus Sucharitakul, Iris Krondorfer, Christoph Sygmund, Dietmar Haltrich, Pimchai Chaiyen, Clemens K. Peterbauer, Christina Divne
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0105751

BdcA, a Protein Important for Escherichia coli Biofilm Dispersal, Is a Short-Chain Dehydrogenase/Reductase that Binds Specifically to NADPH
Cited by: 18
Author(s): Dana M. Lord, Ayşe Uzgören Baran, Thomas K. Wood, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0158024

Mutation in the Pro-Peptide Region of a Cysteine Protease Leads to Altered Activity and Specificity—A Structural and Biochemical Approach
Cited by: 8
Author(s): Sruti Dutta, Dibyasree Choudhury, Sumana Roy, J.K. Dattagupta, Sampa Biswas
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0186110

The effect of the pathological V72I, D109N and T190M missense mutations on the molecular structure of α-dystroglycan
Cited by: 4
Author(s): Sonia Covaceuszach, Manuela Bozzi, Maria Giulia Bigotti, Francesca Sciandra, Petr V. Konarev, Andrea Brancaccio, Alberto Cassetta
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0128222

The Flavonoid Luteolin, but Not Luteolin-7-O-Glucoside, Prevents a Transthyretin Mediated Toxic Response
Cited by: 28
Author(s): Irina Iakovleva, Afshan Begum, Małgorzata Pokrzywa, Malin Walfridsson, A. Elisabeth Sauer‐Eriksson, Anders Olofsson
Software Mentions: 1
Published: over 9 years ago

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