cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1107/S2053230X18002819

Crystal structure of an inferred ancestral bacterial pyruvate decarboxylase
Cited by: 3
Author(s): Lisa Buddrus, Emma Sophie Vout Andrews, David J. Leak, Michael J. Danson, Vickery L. Arcus, S.J. Crennell
Software Mentions: 1
Published: over 8 years ago

10.1107/S2053230X1900904X

The crystal structure of haemoglobin from Atlantic cod
Cited by: 0
Author(s): Ronny Helland, Eva katrin Bjørkeng, U. Rothweiler, Magne O. Sydnes, Daniela M. Pampanin
Software Mentions: 1
Published: about 7 years ago

10.1107/S2053230X15012121

Structural analysis ofClostridium acetobutylicumATCC 824 glycoside hydrolase from CAZy family GH105
Cited by: 1
Author(s): Katherine L. Germane, Matthew D. Servinsky, Elliot S. Gerlach, Christian Sund, Margaret M. Hurley
Software Mentions: 1
Published: about 11 years ago

10.1107/S2053230X19001213

Substrate-analogue complex structure of Mycobacterium tuberculosis decaprenyl diphosphate synthase
Cited by: 8
Author(s): Tzu Ping Ko, Xiansha Xiao, Rey‐Ting Guo, Jian Huang, Weidong Liu, Chun‐Chi Chen
Software Mentions: 1
Published: over 7 years ago

10.1107/S2053230X17016272

Meditope–Fab interaction: threading the hole
Cited by: 1
Author(s): K.P. Bzymek, Yuelong Ma, Kendra N. Avery, David Horne, John C. Williams
Software Mentions: 1
Published: almost 9 years ago

10.1107/S2053230X17001406

The crystal structure of PD1, aHaemophilussurface fibril domain
Cited by: 2
Author(s): J. Wright, Maren Thomsen, R. Kolodziejczyk, Joshua Ridley, Jessica Sinclair, Glenn Carrington, Birendra Singh, Kristian Riesbeck, Adrian Goldman
Software Mentions: 1
Published: over 9 years ago

10.1107/S2053230X19003546

Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2
Cited by: 10
Author(s): Reina Nagamura, Masahiro Fukuda, Akihiro Kawamoto, Kyoko Matoba, Naoshi Dohmae, Ryuichiro Ishitani, Junichi Takagi, Osamu Nureki
Software Mentions: 1
Published: over 7 years ago

10.1107/S2053230X17015515

Pteridine glycosyltransferase from Chlorobium tepidum: crystallization and X-ray analysis
Cited by: 0
Author(s): Killivalavan Asaithambi, Young Shik Park, Kon Ho Lee
Software Mentions: 1
Published: almost 9 years ago

10.1107/S2053230X16010694

Structure of the lutein-binding domain of human StARD3 at 1.74 Å resolution and model of a complex with lutein
Cited by: 38
Author(s): Martin P. Horvath, Evan W. George, Quang Tiến Long Trần, Kody Baumgardner, Gabe Zharov, Sarah Lee, Hassan Sharifzadeh, Saeed Shihab, Ty Mattinson, Binxing Li, Paul S. Bernstein
Software Mentions: 1
Published: about 10 years ago

10.1107/S2053230X17014844

Structure of the staphylococcal enterotoxin B vaccine candidate S19 showing eliminated superantigen activity
Cited by: 0
Author(s): Woo Hyeon Jeong, Dong Hyun Song, Gyeung Haeng Hur, Seong Tae Jeong
Software Mentions: 1
Published: almost 9 years ago

10.1107/S2053230X14005366

Structure of catabolite activator protein with cobalt(II) and sulfate
Cited by: 3
Author(s): Ramya Rangesh Rao, Catherine L. Lawson
Software Mentions: 1
Published: over 12 years ago

10.1107/S2053230X14019785

Structure of a short-chain dehydrogenase/reductase (SDR) within a genomic island from a clinical strain ofAcinetobacter baumannii
Cited by: 7
Author(s): Bhumika S. Shah, Sasha G. Tetu, S.J. Harrop, Ian T. Paulsen, Bridget C. Mabbutt
Software Mentions: 1
Published: almost 12 years ago

10.1107/S2053230X16007202

Cyclization strategies of meditopes: affinity and diffraction studies of meditope–Fab complexes
Cited by: 6
Author(s): K.P. Bzymek, Yuelong Ma, Kendra A. Avery, David Horne, John C. Williams
Software Mentions: 1
Published: over 10 years ago

10.1107/S2053230X17009669

1.12 Å resolution crystal structure of the catalytic domain of the plasmid-mediated colistin resistance determinant MCR-2
Cited by: 20
Author(s): Katie Coates, Timothy R. Walsh, James Spencer, P. Hinchliffe
Software Mentions: 1
Published: about 9 years ago

10.1107/S1744309111042345

Seleno-detergent MAD phasing of leukotriene C4 synthase in complex with dodecyl-β-D-selenomaltoside
Cited by: 7
Author(s): Hiromichi Saino, Hideo Ago, Yoko Ukita, Masashi Miyano
Software Mentions: 1
Published: over 14 years ago

10.1107/S1744309111016770

Expression, purification, crystallization and preliminary crystallographic analysis of a putativeClostridium difficilesurface protein Cwp19
Cited by: 2
Author(s): Jonathan M. Kirby, N. Thiyagarajan, April K. Roberts, Clifford C. Shone, K. Ravi Acharya
Software Mentions: 1
Published: about 15 years ago

10.1107/S1744309113016710

X-ray diffraction studies on merohedrally twinned Δ1–62NtNBCe1-A crystals of the sodium/bicarbonate cotransporter
Cited by: 3
Author(s): Harindarpal S. Gill, Lauren Dutcher, Walter F. Boron, Samir S. Patel, Lisa M. Guay‐Woodford
Software Mentions: 1
Published: about 13 years ago

10.1107/S1744309113030819

Crystallization and preliminary X-ray crystallographic analysis of the inhibitory domain of the tomato mosaic virus resistance protein Tm-1
Cited by: 2
Author(s): Masahiko Katô, Yuichiro Kezuka, Chihoko Kobayashi, Kazuhiro Ishibashi, Takamasa Nonaka, Masayuki Ishikawa, E. Katoh
Software Mentions: 1
Published: over 12 years ago

10.1107/S1744309113000134

Crystallization and preliminary structure determination of the transfer protein TraM from the Gram-positive conjugative plasmid pIP501
Cited by: 6
Author(s): Nikolaus Goessweiner‐Mohr, Lukas Grumet, Tea Pavkov‐Keller, Ruth Birner‐Gruenberger, Elisabeth Grohmann, Walter Keller
Software Mentions: 1
Published: over 13 years ago

10.1007/978-3-319-35072-1_8

Exploiting Microbeams for Membrane Protein Structure Determination
Cited by: 4
Author(s): Anna J. Warren, Danny Axford, Neil G. Paterson, Robin L. Owen
Software Mentions: 1
Published: over 10 years ago

10.1002/advs.202000532

Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation
Cited by: 25
Author(s): Zijun Chen, Zhengyang Li, Xiaojian Hu, Fang Xie, Siyun Kuang, Bowen Zhan, Wenqing Gao, Xiangjun Chen, Siqi Gao, Yang Li, Yongming Wang, Feng Qian, Ding Chen, Jianhua Gan, Chaoneng Ji, Xue-Wei Xu, Zheng Zhou, Jinqing Huang, Housheng Hansen He, Jixi Li
Software Mentions: 1
Published: about 6 years ago

10.1002/advs.202000871

Molecular Basis of Ubiquitination Catalyzed by the Bacterial Transglutaminase MavC
Cited by: 14
Author(s): Hongxin Guan, Jiaqi Fu, Ting Yu, Zhao‐Xi Wang, Ninghai Gan, Yini Huang, Vanja Perčulija, Li Yu, Zhao‐Qing Luo, Songying Ouyang
Software Mentions: 1
Published: over 6 years ago

10.1186/1748-7188-6-12

Sparse estimation for structural variability
Cited by: 2
Author(s): Raghavendra Hosur, Rohit Singh, Bonnie Berger
Software Mentions: 1
Published: over 15 years ago

10.3390/antib7030026

BPSL1626: Reverse and Structural Vaccinology Reveal a Novel Candidate for Vaccine Design Against Burkholderia pseudomallei
Cited by: 12
Author(s): Riccardo Capelli, Claudio Peri, Riccardo Villa, Arnone Nithichanon, Óscar Conchillo-Solé, Daniel Yero, Paola Gagni, Marcella Chiari, Ganjana Lertmemongkolchai, Marina Cretich, Xavier Daura, Martino Bolognesi, Giorgio Colombo, L.J. Gourlay
Software Mentions: 1
Published: about 8 years ago

10.3390/antib10020023

Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography
Cited by: 1
Author(s): Young Do Kwon, Xiangchun E. Wang, Michael F. Bender, Ruojing Yang, Yile Li, Krisha McKee, Reda Rawi, Sijy O’Dell, Nicole A. Schneck, Andrew Shaddeau, Baoshan Zhang, Frank Arnold, Mark Connors, Nicole A. Doria‐Rose, Peter D. Kwong, Q. Paula Lei
Software Mentions: 1
Published: about 5 years ago

10.1128/AAC.01768-15

Comparison of Verona Integron-Borne Metallo-β-Lactamase (VIM) Variants Reveals Differences in Stability and Inhibition Profiles
Cited by: 37
Author(s): Anne Makena, Azer Özad Düzgün, Jürgen Brem, M.A. McDonough, Anna M. Rydzik, Martine I. Abboud, A. Saral, Ayşegül Çopur Çiçek, Cemal Sandallı, Christopher J. Schofield
Software Mentions: 1
Published: over 10 years ago

10.1128/AAC.01335-15

Structural Basis of Metallo-β-Lactamase Inhibition by Captopril Stereoisomers
Cited by: 128
Author(s): Jürgen Brem, Sander S. van Berkel, David Zollman, Sook Y. Lee, O. Gileadi, Peter J. McHugh, Timothy R. Walsh, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: over 10 years ago

10.1128/AAC.02073-20

Structural Investigations of the Inhibition of Escherichia coli AmpC β-Lactamase by Diazabicyclooctanes
Cited by: 8
Author(s): Pauline A. Lang, T.M. Leissing, Malcolm G. P. Page, Christopher J. Schofield, Jürgen Brem
Software Mentions: 1
Published: over 5 years ago

10.1128/AAC.02260-16

Cyclic Boronates Inhibit All Classes of β-Lactamases
Cited by: 89
Author(s): Samuel T. Cahill, Ricky Cain, David Y. Wang, Christopher T. Lohans, David W. Wareham, Henry Oswin, J Manna Mohammed, James Spencer, Colin W. G. Fishwick, M.A. McDonough, Christopher J. Schofield, Jürgen Brem
Software Mentions: 1
Published: over 9 years ago

10.3390/antiox10030389

Structural Insights into a Bifunctional Peptide Methionine Sulfoxide Reductase MsrA/B Fusion Protein from Helicobacter pylori
Cited by: 3
Author(s): Sulhee Kim, Kitaik Lee, Sun Ha Park, Geun Hee Kwak, Min Seok Kim, Hwa Young Kim, Kwang Yeon Hwang
Software Mentions: 1
Published: over 5 years ago

10.3390/antiox7100142

Mitochondrial Arabidopsis thaliana TRXo Isoforms Bind an Iron–Sulfur Cluster and Reduce NFU Proteins In Vitro
Cited by: 21
Author(s): Flavien Zannini, Thomas Roret, Jonathan Przybyla-Toscano, Tiphaine Dhalleine, Nicolas Rouhier, Jérémy Couturier
Software Mentions: 1
Published: almost 8 years ago

10.3390/antiox8100461

C-terminal Redox Domain of Arabidopsis APR1 is a Non-Canonical Thioredoxin Domain with Glutaredoxin Function
Cited by: 4
Author(s): Fang‐Fang Chen, Chia‐Yu Chien, Chao-Cheng Cho, Yi‐Chung Chang, Chun‐Hua Hsu
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00253-020-10960-x

Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods
Cited by: 19
Author(s): Sanni Voutilainen, Markus Heinonen, Martina Andberg, Emmi Jokinen, Hannu Maaheimo, J. Paakkonen, Nina Hakulinen, Juha Rouvinen, Harri Lähdesmäki, Samuel Kaski, Juho Rousu, Merja Penttilä, Anu Koivula
Software Mentions: 1
Published: almost 6 years ago

10.1080/15548627.2020.1822629

RAB33B recruits the ATG16L1 complex to the phagophore via a noncanonical RAB binding protein
Cited by: 16
Author(s): Supansa Pantoom, Georgios Konstantinidis, Stephanie Voß, Han Hong-mei, Oliver Hofnagel, Zhiyu Li, Yao‐Wen Wu
Software Mentions: 1
Published: almost 6 years ago

10.1080/15548627.2016.1226736

Characterization of Atg38 and NRBF2, a fifth subunit of the autophagic Vps34/PIK3C3 complex
Cited by: 50
Author(s): Yohei Ohashi, Nicolas Soler, Miguel García Ortegón, Lufei Zhang, Marie L. Kirsten, Olga Perišić, Glenn R. Masson, John E. Burke, Arjen J. Jakobi, Apostolos A. Apostolakis, Christopher M. Johnson, Maki Ohashi, Nicholas T. Ktistakis, Carsten Sachse, Roger L. Williams
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12858-017-0082-4

Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem
Cited by: 39
Author(s): M.A. Bianchet, Ying Pan, Leighanne A. Brammer Basta, Harry Saavedra, Evan P. Lloyd, Priyanka Kumar, Rohini Mattoo, Craig A. Townsend, Gyanu Lamichhane
Software Mentions: 1
Published: about 9 years ago

10.1186/s12915-018-0524-5

Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography
Cited by: 106
Author(s): J.L. Olmos, Suraj Pandey, José M. Martín-García, George D. Calvey, Andrea M. Katz, J. Knoška, Christopher Kupitz, Mark S. Hunter, Mao Liang, D. Oberthüer, Oleksandr Yefanov, Max O. Wiedorn, M. Heyman, Mark R. Holl, Kanupriya Pande, Anton Barty, Mitchell D. Miller, Stephan Stern, Shatabdi Roy-Chowdhury, Jesse Coe, Nirupa Nagaratnam, James Zook, Jacob Verburgt, Tyler Norwood, Ishwor Poudyal, David Xu, Jason E. Koglin, Matthew Seaberg, Yun Zhao, Saša Bajt, Thomas D. Grant, Valerio Mariani, Garrett Nelson, Ganesh Subramanian, Euiyoung Bae, Raimund Fromme, Russell Fung, Peter Schwander, Matthias Frank, Thomas A. White, Uwe Weierstall, Nadia A. Zatsepin, John C. H. Spence, Petra Fromme, Henry N. Chapman, Lois Pollack, L.W. Tremblay, A. Ourmazd, George N. Phillips, Marius Schmidt
Software Mentions: 1
Published: about 8 years ago

10.1186/s12915-016-0298-6

Casitas B-lineage lymphoma linker helix mutations found in myeloproliferative neoplasms affect conformation
Cited by: 15
Author(s): Lori Buetow, Giancarlo Tria, Syed Feroj Ahmed, A. Höck, Haoran Dou, Gary Sibbet, Dmitri I. Svergun, Danny T. Huang
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12860-020-0249-5

A doublecortin-domain protein of Toxoplasma and its orthologues bind to and modify the structure and organization of tubulin polymers
Cited by: 26
Author(s): Jacqueline M. Leung, Eiji Nagayasu, Yu Chen Hwang, Jun Li, Phillip G. Pierce, Isabelle Phan, Robin Prentice, John M. Murray, Ke Hu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12860-019-0213-4

CD40/anti-CD40 antibody complexes which illustrate agonist and antagonist structural switches
Cited by: 14
Author(s): M.A. Argiriadi, Lorenzo Benatuil, I. Dubrovska, David A. Egan, Lei Gao, Amy Greischar, Jennifer Hardman, John E. Harlan, Ramesh Iyer, Russell A. Judge, Marc Lake, Denise Perron, Ramkrishna Sadhukhan, Bernhard Sielaff, Silvino Sousa, Rui Wang, Bradford L. McRae
Software Mentions: 1
Published: about 7 years ago

10.1186/1472-6807-13-19

Crystal structure of c5321: a protective antigen present in uropathogenic Escherichia coli strains displaying an SLR fold
Cited by: 15
Author(s): Dunja Urosev, Mario Ferrer-Navarro, Ilaria Pastorello, Elena Cartocci, Lionel Costenaro, Dmitrijs Zhulenkovs, Jean‐Didier Maréchal, Ainars Leonchiks, David Reverter, Laura Serino, Marco Soriani, Xavier Daura
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12900-015-0040-6

Crystal structure of O-methyltransferase CalO6 from the calicheamicin biosynthetic pathway: a case of challenging structure determination at low resolution
Cited by: 9
Author(s): Oleg V. Tsodikov, Can Hou, Christopher T. Walsh, Sylvie Garneau‐Tsodikova
Software Mentions: 1
Published: about 11 years ago

10.1186/s12900-016-0053-9

Crystal structure and functional implications of the tandem-type universal stress protein UspE from Escherichia coli
Cited by: 6
Author(s): Yongbin Xu, Jianyun Guo, Xiaoling Jin, Jinsik Kim, Jian Ying, Fan Sheng-di, Nam‐Chul Ha, Chunshan Quan
Software Mentions: 1
Published: over 10 years ago

10.1186/1472-6807-10-3

Analysis of the role of PCNA-DNA contacts during clamp loading
Cited by: 99
Author(s): Randall McNally, Gregory D. Bowman, Eric R. Goedken, Mike O'Donnell, John Kuriyan
Software Mentions: 1
Published: over 16 years ago

10.1186/1472-6807-7-69

Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+
Cited by: 19
Author(s): Alessandro S. Nascimento, Daniela L. Catalano-Dupuy, Amanda Bernardes, Mário de Oliveira Neto, M. A. M. Santos, Eduardo A. Ceccarelli, Igor Polikarpov
Software Mentions: 1
Published: almost 19 years ago

10.1186/s12900-016-0058-4

Crystal structure of human S100A8 in complex with zinc and calcium
Cited by: 21
Author(s): Haili Lin, Gregers Rom Andersen, Laure Yatime
Software Mentions: 1
Published: about 10 years ago

10.1186/1472-6807-8-42

The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase
Cited by: 84
Author(s): Jonathan A. Winger, Emily R. Derbyshire, Meindert H. Lamers, Michael A. Marletta, John Kuriyan
Software Mentions: 1
Published: almost 18 years ago

10.1186/1472-6807-10-10

The structure of a reduced form of OxyR from Neisseria meningitidis
Cited by: 23
Author(s): Sarah Sainsbury, Jingshan Ren, Joanne E. Nettleship, N. Saunders, David I. Stuart, Raymond J. Owens
Software Mentions: 1
Published: over 16 years ago

10.1186/1472-6807-13-11

Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases
Cited by: 23
Author(s): Shunsuke Matsumoto, Akira Shimada, Daisuke Kohda
Software Mentions: 1
Published: about 13 years ago

10.1186/1472-6807-12-23

Crystal structure of HutZ, a heme storage protein from Vibrio cholerae: A structural mismatch observed in the region of high sequence conservation
Cited by: 18
Author(s): Xiuhua Li, Jianping Gong, Tian‐Ran Wei, Zhi Wang, Qian Du, Deyu Zhu, Yan Huang, Sujuan Xu, Lichuan Gu
Software Mentions: 1
Published: almost 14 years ago

10.1186/1472-6807-13-5

Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC
Cited by: 13
Author(s): Jungwook Kim, Steven C. Almo
Software Mentions: 1
Published: over 13 years ago

10.1186/1472-6807-13-18

Molecular details of ligand selectivity determinants in a promiscuous β-glucan periplasmic binding protein
Cited by: 8
Author(s): Parthapratim Munshi, Christopher B. Stanley, Sudipa Ghimire-Rijal, Xiaozhi Lu, Dean A. A. Myles, M.J. Cuneo
Software Mentions: 1
Published: almost 13 years ago

10.1186/1472-6807-9-7

The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2)
Cited by: 80
Author(s): Jonathan A. Winger, Oliver Hantschel, Giulio Superti‐Furga, John Kuriyan
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6807-14-14

High resolution structure of cleaved Serpin 42 Da from Drosophila melanogaster
Cited by: 15
Author(s): Andrew M. Ellisdon, Qingwei Zhang, Michelle A Henstridge, Travis K. Johnson, Coral G. Warr, Ruby H. P. Law, James C. Whisstock
Software Mentions: 1
Published: over 12 years ago

10.1042/BJ20140153

Structural and biochemical characterization of the KLHL3–WNK kinase interaction important in blood pressure regulation
Cited by: 68
Author(s): Frances‐Rose Schumacher, F.J. Sorrell, Dario R. Alessi, Alex N. Bullock, Thimo Kurz
Software Mentions: 1
Published: over 12 years ago

10.1042/BCJ20170527

Structural complexity in the KCTD family of Cullin3-dependent E3 ubiquitin ligases
Cited by: 64
Author(s): Daniel Pinkas, C. Sanvitale, J.C. Bufton, F.J. Sorrell, Nicolae Solcan, R. Chalk, James Doutch, Alex N. Bullock
Software Mentions: 1
Published: almost 9 years ago

10.1042/BCJ20210565

Structure and function of aerotolerant, multiple-turnover THI4 thiazole synthases
Cited by: 6
Author(s): Jaya Joshi, Qiang Li, Jorge Donato García‐García, Bryan J. Leong, Yukun Hu, Steven D. Bruner, Andrew D. Hanson
Software Mentions: 1
Published: almost 5 years ago

10.1042/BJ20130276

Analysing the visible conformational substates of the FK506-binding protein FKBP12
Cited by: 17
Author(s): Sourajit M. Mustafi, Hui Chen, Hongmin Li, David M. LeMaster, Griselda Hernández
Software Mentions: 1
Published: about 13 years ago

10.1042/BJ20131429

Structural basis of conformational transitions in the active site and 80′s loop in the FK506-binding protein FKBP12
Cited by: 13
Author(s): Sourajit M. Mustafi, Michael Brecher, Jing Zhang, Hongmin Li, David M. LeMaster, Griselda Hernández
Software Mentions: 1
Published: over 12 years ago

10.1042/BCJ20210511

Cryo-EM structure of the Rhodospirillum rubrum RC–LH1 complex at 2.5 Å
Cited by: 22
Author(s): Pu Qian, Tristan I. Croll, David J. K. Swainsbury, Pablo Castro‐Hartmann, Nigel W. Moriarty, Kasim Sader, C. Neil Hunter
Software Mentions: 1
Published: almost 5 years ago

10.1042/BCJ20210160

The structures of E. coli NfsA bound to the antibiotic nitrofurantoin; to 1,4-benzoquinone and to FMN
Cited by: 13
Author(s): Martin A. Day, David Jarrom, Andrew J. Christofferson, Antonio E. Graziano, J. L. Ross Anderson, Peter F. Searle, Eva I. Hyde, Scott A. White
Software Mentions: 1
Published: about 5 years ago

10.1016/j.bbagen.2016.01.016

Aminoglycoside binding and catalysis specificity of aminoglycoside 2″-phosphotransferase IVa: A thermodynamic, structural and kinetic study
Cited by: 8
Author(s): Elise Kaplan, Jean-François Guichou, Laurent Chaloin, Simone Kunzelmann, Nadia Leban, Engin H. Serpersu, Corinne Lionne
Software Mentions: 1
Published: over 10 years ago

10.1155/2021/2572844

Complexed Crystal Structure of Saccharomyces cerevisiae Dihydroorotase with Inhibitor 5-Fluoroorotate Reveals a New Binding Mode
Cited by: 8
Author(s): Hong‐Hsiang Guan, Yen‐Hua Huang, En‐Shyh Lin, Chun‐Jung Chen, Cheng-Yang Huang
Software Mentions: 1
Published: almost 5 years ago

10.1242/bio.036749

DARPins recognizing mTFP1 as novel reagents for in vitro and in vivo protein manipulations
Cited by: 6
Author(s): M. Alessandra Viganò, Dimitri Bieli, Jonas V. Schaefer, R.P. Jakob, Shinya Matsuda, Timm Maier, Andreas Plückthun, Markus Affolter
Software Mentions: 1
Published: over 8 years ago

10.1186/s12575-020-00141-5

Insights of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV-2) pandemic: a current review
Cited by: 19
Author(s): Jyoti Choudhary, Shrivardhan Dheeman, Vipin Sharma, Prashant Katiyar, Santosh Kumar Karn, Manoj Kumar Sarangi, Ankit Chauhan, Gaurav Verma, Nitin Baliyan
Software Mentions: 1
Published: over 5 years ago

10.3390/biom10101411

Dissecting the Cytochrome P450 OleP Substrate Specificity: Evidence for a Preferential Substrate
Cited by: 6
Author(s): Giacomo Parisi, Ida Freda, Cécile Exertier, Cristina Cecchetti, Elena Gugole, Gabriele Cerutti, Lucia D’Auria, Alberto Macone, B. Vallone, C. Savino, Linda Celeste Montemiglio
Software Mentions: 1
Published: almost 6 years ago

10.3390/biom10060899

Bicyclic Boronates as Potent Inhibitors of AmpC, the Class C β-Lactamase from Escherichia coli
Cited by: 17
Author(s): Pauline A. Lang, Anete Parkova, T.M. Leissing, Karina Calvopiña, Ricky Cain, Alen Krajnc, Tharindi Panduwawala, Jules Philippe, Colin W. G. Fishwick, Pēteris Trapencieris, Malcolm G. P. Page, Christopher J. Schofield, Jürgen Brem
Software Mentions: 1
Published: about 6 years ago

10.3390/biom8030081

Crystal Structure of the Human tRNA Guanine Transglycosylase Catalytic Subunit QTRT1
Cited by: 14
Author(s): Sven Johannsson, Piotr Neumann, Ralf Ficner
Software Mentions: 1
Published: almost 8 years ago

10.3390/biom10091342

Cryo-EM Structure of Heterologous Protein Complex Loaded Thermotoga Maritima Encapsulin Capsid
Cited by: 9
Author(s): Xiansong Xiong, Chen Sun, Frank S. Vago, Thomas Klose, Jian‐Kang Zhu, Wen Jiang
Software Mentions: 1
Published: almost 6 years ago

10.3390/biom10010163

Structural Analyses on the Deamidation of N-Terminal Asn in the Human N-Degron Pathway
Cited by: 9
Author(s): Joon Sung Park, Jae-Young Lee, Nguyen Thi Hai Yen, Nae‐Won Kang, Eunyoung Oh, Dong Man Jang, Hyun-Jung Kim, Dae‐Duk Kim, Byung Woo Han
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10050671

Structures of FOX-4 Cephamycinase in Complex with Transition-State Analog Inhibitors
Cited by: 4
Author(s): Scott T. Lefurgy, Emilia Caselli, Magdalena A. Taracila, V.N. Malashkevich, Beena Biju, Krisztina M. Papp-Wallace, J.B. Bonanno, Fabio Prati, Steven C. Almo, Robert A. Bonomo
Software Mentions: 1
Published: over 6 years ago

10.1016/j.bpj.2021.06.006

Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication
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Software Mentions: 1
Published: about 5 years ago

10.1016/j.bpj.2020.12.029

Improving SARS-CoV-2 structures: Peer review by early coordinate release
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Author(s): Tristan I. Croll, Christopher J. Williams, Vincent B. Chen, David C. Richardson, Jane S. Richardson
Software Mentions: 1
Published: over 5 years ago

10.1016/j.bpj.2017.10.002

Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA
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Software Mentions: 1
Published: over 8 years ago

10.1042/BSR20190715

Identification and characterization of a new sulfoacetaldehyde reductase from the human gut bacterium Bifidobacterium kashiwanohense
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Author(s): Yan Zhou, Yifeng Wei, Ankanahalli N. Nanjaraj Urs, Lei Lin, Tong Xu, Yiling Hu, Ee Lui Ang, Huimin Zhao, Zhiguang Yuchi, Yan Zhang
Software Mentions: 1
Published: about 7 years ago

10.1042/BSR20130017

Crystal structure of the capsular polysaccharide synthesizing protein CapE of Staphylococcus aureus
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Author(s): Takamitsu Miyafusa, José M. M. Caaveiro, Yoshikazu Tanaka, Martin E. Tanner, Kouhei Tsumoto
Software Mentions: 1
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10.1042/BSR20201109

Structural insight into the type-specific epitope of porcine circovirus type 3
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Software Mentions: 1
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10.1042/BSR20140143

A novel cytosolic NADH:quinone oxidoreductase from Methanothermobacter marburgensis
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10.1042/BSR20171399

Structural determinants for protein unfolding and translocation by the Hsp104 protein disaggregase
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Author(s): Jung-soon Lee, Nuri Sung, Lythou Yeo, Changsoo Chang, Sukyeong Lee, Francis T.F. Tsai
Software Mentions: 1
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10.1042/BSR20181073

Combinatorial use of disulfide bridges and native sulfur-SAD phasing for rapid structure determination of coiled-coils
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10.1042/BSR20202959

Investigating the reaction and substrate preference of indole-3-acetaldehyde dehydrogenase from the plant pathogen Pseudomonas syringae PtoDC3000
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Author(s): Kaleena Zhang, Josephine S. Lee, Regina Liu, Zita T. Chan, Trenton J. Dawson, Elisa S De Togni, Chris T. Edwards, Isabel K. Eng, Ashley Gao, Luis A. Goicouria, Erin M. Hall, Keao Hu, Katherine Huang, Alexander Kizhner, Kelsie Kodama, Andrew Z. Lin, Jennifer Y. Liu, Alan Y. Lu, Owen W. Peng, Erica Ryu, Sophia Shi, Maria L. Sorkin, Patricia L. Walker, Grace J. Wang, Mark C. Xu, Rebecca S. Yang, Barrie Cascella, Wilhelm S. Cruz, Cynthia K. Holland, Sheri A. McClerkin, Barbara N. Kunkel, Soon Goo Lee, Joseph M. Jez
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10.1042/BSR20202956

Sinorhizobium meliloti YrbA binds divalent metal cations using two conserved histidines
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Author(s): Thomas Roret, Geneviève Alloing, Jean‐Michel Girardet, Thomas Perrot, Tiphaine Dhalleine, Jérémy Couturier, Pierre Frendo, Claude Didierjean, Nicolas Rouhier
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Published: almost 6 years ago

10.1042/BSR20140137

Analysis of mRNA recognition by human thymidylate synthase
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Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions
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10.1038/s41413-020-0095-2

Osteogenesis imperfecta mutations in plastin 3 lead to impaired calcium regulation of actin bundling
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Author(s): Christopher L. Schwebach, Elena Kudryashova, Weili Zheng, Matthew Orchard, Harper Smith, Lucas A Runyan, Edward H. Egelman, Dmitri S. Kudryashov
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10.1002/brb3.2292

Non‐motor phenotypic subgroups in adult‐onset idiopathic, isolated, focal cervical dystonia
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Software Mentions: 1
Published: about 5 years ago

10.1016/j.carres.2017.07.005

Cellodextrin phosphorylase from Ruminiclostridium thermocellum: X-ray crystal structure and substrate specificity analysis
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Software Mentions: 1
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10.1038/s41375-018-0273-z

DUX4HD2-DNAERG structure reveals new insight into DUX4-Responsive-Element
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Software Mentions: 1
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10.26508/lsa.202101011

Dynamic closed states of a ligand-gated ion channel captured by cryo-EM and simulations
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Author(s): Urška Rovšnik, Yinghong Zhuang, Björn Forsberg, Marta Carroni, Linnea Yvonnesdotter, Rebecca J. Howard, Erik Lindahl
Software Mentions: 1
Published: about 5 years ago

10.26508/lsa.201800072

Beetle luciferases with naturally red- and blue-shifted emission
Cited by: 20
Author(s): César Carrasco-López, Juliana C. Ferreira, Nathan M. Lui, Stefan Schramm, Romain Berraud-Pache, Isabelle Navizet, Santosh Panjikar, Panče Naumov, Wael M. Rabeh
Software Mentions: 1
Published: about 8 years ago

10.26508/lsa.201900578

A key region of molecular specificity orchestrates unique ephrin-B1 utilization by Cedar virus
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Author(s): Rhys Pryce, Kristopher D. Azarm, Ilona Rissanen, K. Harlos, Thomas A. Bowden, Benhur Lee
Software Mentions: 1
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10.1186/1475-2875-9-90

Structure, localization and histone binding properties of nuclear-associated nucleosome assembly protein from Plasmodium falciparum
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Author(s): Jasmita Gill, Anuj Kumar, Manickam Yogavel, Hassan Belrhali, SK Jain, Melanie Rug, Monica Brown, Alexander G. Maier, Amit Sharma
Software Mentions: 1
Published: over 16 years ago

10.3390/membranes11070459

The Det.Belt Server: A Tool to Visualize and Estimate Amphipathic Solvent Belts around Membrane Proteins
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Software Mentions: 1
Published: about 5 years ago

10.15698/mic2017.12.602

Aminoglycoside resistance profile and structural architecture of the aminoglycoside acetyltransferase AAC(6’)-Im
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Author(s): Clyde A. Smith, Monolekha Bhattacharya, Márta Tóth, Nichole K. Stewart, Sergei B. Vakulenko
Software Mentions: 1
Published: over 8 years ago

10.1002/mbo3.373

Exploring the mechanisms of action of human secretory<scp>RN</scp>ase 3 and<scp>RN</scp>ase 7 againstCandida albicans
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Software Mentions: 1
Published: about 10 years ago

10.1002/mbo3.254

Patterns of structural and sequence variation within isotype lineages of the Neisseria meningitidis transferrin receptor system
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Author(s): Paul Adamiak, Charles Calmettes, Trevor F. Moraes, Anthony B. Schryvers
Software Mentions: 1
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10.1002/mbo3.753

The role of the tyrosine kinase Wzc (Sll0923) and the phosphatase Wzb (Slr0328) in the production of extracellular polymeric substances (EPS) by Synechocystis PCC 6803
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Author(s): Sara B. Pereira, Marina Santos, José P. Leite, Carlos Flores, Carina Eisfeld, Zsófia Büttel, Rita Mota, Federico Rossi, Roberto De Philippis, J.H. Morais-Cabral, Paula Tamagnini
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-018-0421-8

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Author(s): Adrian E. Naas, Lindsey Solden, Angela D. Norbeck, Heather M. Brewer, Live Heldal Hagen, Ingrid Marie Høimyr Heggenes, Alice C. McHardy, Roderick I. Mackie, Ljiljana Paša‐Tolić, Magnus Ø. Arntzen, Vincent G. H. Eijsink, Nicole M. Koropatkin, Matthias Hess, Kelly Wrighton, Phillip B. Pope
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms8060943

Cryo-EM Structure and Molecular Dynamics Analysis of the Fluoroquinolone Resistant Mutant of the AcrB Transporter from Salmonella
Cited by: 22
Author(s): Rachel M. Johnson, Chiara Fais, Mayuriben J. Parmar, Harish Cheruvara, Robert L. Marshall, Sophie J. Hesketh, Matthew C. Feasey, Paolo Ruggerone, Attilio Vittorio Vargiu, Vincent L. G. Postis, Stephen P. Muench, Vassiliy N. Bavro
Software Mentions: 1
Published: about 6 years ago

10.1016/j.molcel.2017.06.010

Structure of Full-Length SMC and Rearrangements Required for Chromosome Organization
Cited by: 145
Author(s): Marie-Laure Diebold-Durand, Hansol Lee, Laura B. Ruiz Avila, Haemin Noh, Hang‐Sik Shin, Haeri Im, Florian Patrick Bock, Frank Bürmann, A. Durand, Alrun Basfeld, Sihyun Ham, J. Basquin, Byung‐Ha Oh, Stephan Gruber
Software Mentions: 1
Published: about 9 years ago

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