cran: PHENIX | Projects | Ecosyste.ms: Papers

10.3390/molecules200610848

Molecular Cloning, Carbohydrate Specificity and the Crystal Structure of Two Sclerotium rolfsii Lectin Variants
Cited by: 9
Author(s): V.I. Peppa, Hemalatha Venkat, A.L. Kantsadi, Shashikala R. Inamdar, Ganapati Bhat, Sachin M. Eligar, Anupama Shivanand, Vishwanath B. Chachadi, Gonchigar J. Satisha, Bale M. Swamy, Vassiliki T. Skamnaki, S.E. Zographos, D.D. Leonidas
Software Mentions: 1
Published: about 11 years ago

10.3390/molecules25102295

High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch
Cited by: 9
Author(s): M.M. Matyjasik, Simone D Hall, Robert T. Batey
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules24234309

Concepts and Core Principles of Fragment-Based Drug Design
Cited by: 96
Author(s): Philine Kirsch, Alwin M. Hartman, A. Hirsch, Martin Empting
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules23010032

Structural Basis for the Substrate Inhibition of Proline Utilization A by Proline
Cited by: 9
Author(s): David A. Korasick, T.A. Pemberton, Benjamin W. Arentson, Donald F. Becker, John J. Tanner
Software Mentions: 1
Published: over 8 years ago

10.3390/molecules25071760

Biophysical Screens Identify Fragments That Bind to the Viral DNA-Binding Proteins EBNA1 and LANA
Cited by: 9
Author(s): Troy E. Messick, Lois Tolvinski, Edward R. Zartler, Anna Moberg, Åsa Frostell, Garry R. Smith, Allen B. Reitz, Paul M. Lieberman
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules24193507

Promutagenicity of 8-Chloroguanine, A Major Inflammation-Induced Halogenated DNA Lesion
Cited by: 15
Author(s): Yi Kou, Myong Chul Koag, Seongmin Lee
Software Mentions: 1
Published: almost 7 years ago

10.3390/molecules18055706

Virtual Screening and Structure-Based Discovery of Indole Acylguanidines as Potent β-secretase (BACE1) Inhibitors
Cited by: 22
Author(s): Yiquan Zou, Li Li, Wuyan Chen, Tiantian Chen, Li Ma, Xin Wang, Bing Xiong, Yechun Xu, Jingkang Shen
Software Mentions: 1
Published: over 13 years ago

10.3390/molecules26040946

A Rationale for Drug Design Provided by Co-Crystal Structure of IC261 in Complex with Tubulin
Cited by: 4
Author(s): Jinghong Xian, Faqian Bu, Yuxi Wang, Fangyi Long, Zhixiong Zhang, Chengyong Wu, Yiran Tao, Ting Wang, Guan Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules191221113

Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus vannamei
Cited by: 5
Author(s): A.A. Campos-Acevedo, E. Rudiño-Piñera
Software Mentions: 1
Published: over 11 years ago

10.3390/molecules26051225

Phage-Display Based Discovery and Characterization of Peptide Ligands against WDR5
Cited by: 3
Author(s): Jiawen Cao, Tiantian Fan, Yanlian Li, Zhimin Du, Lin Chen, Ying Wang, Xin Wang, Jingkang Shen, Xun Huang, Bing Xiong, Danyan Cao
Software Mentions: 1
Published: over 5 years ago

10.1016/j.molimm.2019.04.026

The role of the light chain in the structure and binding activity of two cattle antibodies that neutralize bovine respiratory syncytial virus
Cited by: 10
Author(s): Jingshan Ren, Joanne E. Nettleship, Gemma Harris, William Mwangi, N. Rhaman, Clare F. J. Grant, Abhay Kotecha, Elizabeth E. Fry, Bryan Charleston, D.I. Stuart, John A. Hammond, Raymond J. Owens
Software Mentions: 1
Published: about 7 years ago

10.1111/mmi.13876

FzlA, an essential regulator of FtsZ filament curvature, controls constriction rate duringCaulobacterdivision
Cited by: 20
Author(s): Patrick J. Lariviere, Piotr Szwedziak, Christopher R. Mahone, Jan Löwe, Erin D. Goley
Software Mentions: 1
Published: over 8 years ago

10.15252/msb.20156701

Predictive features of ligand‐specific signaling through the estrogen receptor
Cited by: 39
Author(s): Jerome C. Nwachukwu, Sathish Srinivasan, Yangfan Zheng, Song Wang, Jian Min, Chune Dong, Zongquan Liao, J. Nowak, Nicholas J. Wright, René Houtman, Kathryn E. Carlson, J.S. Josan, Olivier Elemento, John A. Katzenellenbogen, Hai-Bing Zhou, K.W. Nettles
Software Mentions: 1
Published: over 10 years ago

10.3390/vaccines9040322

Structure, Immunoreactivity, and In Silico Epitope Determination of SmSPI S. mansoni Serpin for Immunodiagnostic Application
Cited by: 3
Author(s): S. De Benedetti, F. Di Pisa, Enrico M. A. Fassi, Marina Cretich, Angelo Musicò, Roberto Frigerio, Alessandro Mussida, Mauro Bombaci, Renata Grifantini, Giorgio Colombo, Martino Bolognesi, Romualdo Grande, Nadia Zanchetta, Maria Rita Gismondo, Davide Mileto, Alessandro Mancon, L.J. Gourlay
Software Mentions: 1
Published: over 5 years ago

10.1016/j.virol.2013.08.010

Changes in the hemagglutinin of H5N1 viruses during human infection – Influence on receptor binding
Cited by: 29
Author(s): Martín Crusat, Junfeng Liu, Angelina S. Palma, Robert A. Childs, Yan Liu, Steve Wharton, Yi Pu Lin, P.J. Coombs, Stephen R. Martin, Mikhail Matrosovich, Ziqiang Chen, David Stevens, Vo Minh Hien, Tran Tan Thanh, Le Nguyen Truc Nhu, Lam Anh Nguyet, Do Quang Ha, H. Rogier van Doorn, Tran Tinh Hien, Harald S. Conradt, Makoto Kiso, S.J. Gamblin, Wengang Chai, J.J. Skehel, Alan J. Hay, Jeremy Farrar, Menno D. de Jong, Ten Feizi
Software Mentions: 1
Published: over 12 years ago

10.1093/ve/veaa023

Structure of a filamentous virus uncovers familial ties within the archaeal virosphere
Cited by: 11
Author(s): Fengbin Wang, Diana P. Baquero, Zhangli Su, T. Osinski, David Prangishvili, Edward H. Egelman, Mart Krupovìč
Software Mentions: 1
Published: over 6 years ago

10.3390/v4040447

Structural Basis for Differential Neutralization of Ebolaviruses
Cited by: 63
Author(s): Shridhar Bale, João M. Dias, Marnie L. Fusco, Takao Hanabusa, Anthony Wong, Tong Liu, Ana I. Keuhne, Li Sheng, Virgil L. Woods, Kartik Chandran, John M. Dye, Erica Ollmann Saphire
Software Mentions: 1
Published: over 14 years ago

10.3390/v7082839

Structure and Biophysical Properties of a Triple-Stranded Beta-Helix Comprising the Central Spike of Bacteriophage T4
Cited by: 8
Author(s): S.A. Buth, Laure Menin, Mikhail M. Shneider, Juergen Engel, Sergei P. Boudko, P.G. Leiman
Software Mentions: 1
Published: about 11 years ago

10.3390/v9100305

Structural and Functional Insight into Canarypox Virus CNP058 Mediated Regulation of Apoptosis
Cited by: 21
Author(s): Mohd Ishtiaq Anasir, Amy A. Baxter, Ivan K. H. Poon, Mark D. Hulett, Marc Kvansakul
Software Mentions: 1
Published: almost 9 years ago

10.3390/v9110335

Crystal Structure of the Full-Length Feline Immunodeficiency Virus Capsid Protein Shows an N-Terminal β-Hairpin in the Absence of N-Terminal Proline
Cited by: 10
Author(s): Christelle Folio, Natalia Sierra, Marie Dujardin, Guzmán Álvarez, Christophe Guillon
Software Mentions: 1
Published: almost 9 years ago

10.3390/v10080427

Structure and Analysis of R1 and R2 Pyocin Receptor-Binding Fibers
Cited by: 32
Author(s): S.A. Buth, Mikhail M. Shneider, Dean Scholl, P.G. Leiman
Software Mentions: 1
Published: about 8 years ago

10.3390/v11090789

Crystal Structure of African Swine Fever Virus A179L with the Autophagy Regulator Beclin
Cited by: 31
Author(s): Suresh Banjara, Gareth Shimmon, Linda K. Dixon, Christopher L. Netherton, Mark G. Hinds, Marc Kvansakul
Software Mentions: 1
Published: almost 7 years ago

10.3390/v12030326

Structural and Functional Characterization of the Secondary Mutation N126K Selected by Various HIV-1 Fusion Inhibitors
Cited by: 1
Author(s): Danwei Yu, Yang Sai, Xiaohui Ding, Yuanmei Zhu, Bo Qin, Huihui Chong, Sheng Cui, Yuxian He
Software Mentions: 1
Published: over 6 years ago

10.3390/v12060653

Structural Characterization of Cuta- and Tusavirus: Insight into Protoparvoviruses Capsid Morphology
Cited by: 8
Author(s): Mario Mietzsch, Robert McKenna, Elina Väisänen, Jennifer C. Yu, Maria Ilyas, Joshua A. Hull, Justin Kurian, J. W. G. Smith, Paul R. Chipman, Yi Lasanajak, David F. Smith, Maria Söderlund‐Venermo, Mavis Agbandje‐McKenna
Software Mentions: 1
Published: about 6 years ago

10.3390/v12101075

Binding Mechanism Elucidation of the Acute Respiratory Disease Causing Agent Adenovirus of Serotype 7 to Desmoglein-2
Cited by: 5
Author(s): Marc-André Hograindleur, Grégory Effantin, Daphna Fenel, Caroline Mas, André Lieber, Guy Schoehn, Pascal Fender, Émilie Vassal-Stermann
Software Mentions: 1
Published: almost 6 years ago

10.3390/v13020330

Characterization of the GBoV1 Capsid and Its Antibody Interactions
Cited by: 6
Author(s): Jennifer C. Yu, Mario Mietzsch, Amriti Singh, Alberto Jimenez Ybargollin, Shweta Kailasan, Paul R. Chipman, Nilakshee Bhattacharya, Julia Fakhiri, Dirk Grimm, Amit Kapoor, Indrė Kučinskaitė-Kodzė, Aurelija Žvirblienė, Maria Söderlund‐Venermo, Robert McKenna, Mavis Agbandje‐McKenna
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.9408

Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis
Cited by: 3
Author(s): Shanshan Wu, Tam T. T. N. Nguyen, Olga V. Moroz, J.P. Turkenburg, Jens Erik Nielsen, K.S. Wilson, Kasper D. Rand, Kaare Teilum
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.305

Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB)
Cited by: 7
Author(s): Amar Joshi, Vicent Esteve, Adrian Buckroyd, Markus Blatter, Frédéric H.‐T. Allain, Stephen Curry
Software Mentions: 1
Published: over 12 years ago

10.7717/peerj.10974

Forbidden links, trait matching and modularity in plant-hummingbird networks: Are specialized modules characterized by higher phenotypic floral integration?
Cited by: 4
Author(s): Jaume Izquierdo-Palma, María del Coro Arizmendi, Carlos Lara, Juan Francisco Ornelas
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.1858

Characterisation ofSchizosaccharomyces pombe α-actinin
Cited by: 7
Author(s): Barbara Addario, Linda Sandblad, Karina Persson, Lars Backman
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.5815

C9orf72, a protein associated with amyotrophic lateral sclerosis (ALS) is a guanine nucleotide exchange factor
Cited by: 43
Author(s): Shalini Iyer, Vasanta Subramanian, K. Ravi Acharya
Software Mentions: 1
Published: almost 8 years ago

10.3390/ph11010023

A π-Halogen Bond of Dibenzofuranones with the Gatekeeper Phe113 in Human Protein Kinase CK2 Leads to Potent Tight Binding Inhibitors
Cited by: 6
Author(s): Alexander Schnitzler, Andreas Gratz, Andre Bollacke, Michael Weyrich, Uwe Kuckländer, Bernhard Wünsch, Claudia Götz, Karsten Niefind, Joachim Jose
Software Mentions: 1
Published: over 8 years ago

10.3390/ph10010009

Structural Hypervariability of the Two Human Protein Kinase CK2 Catalytic Subunit Paralogs Revealed by Complex Structures with a Flavonol- and a Thieno[2,3-d]pyrimidine-Based Inhibitor
Cited by: 11
Author(s): Karsten Niefind, N. Bischoff, Andriy G. Golub, Volodymyr G. Bdzhola, A.O. Balanda, A.O. Prykhod'ko, S. M. Yarmoluk
Software Mentions: 1
Published: over 9 years ago

10.3390/ph10040098

Unexpected Binding Mode of a Potent Indeno[1,2-b]indole-Type Inhibitor of Protein Kinase CK2 Revealed by Complex Structures with the Catalytic Subunit CK2α and Its Paralog CK2α′
Cited by: 13
Author(s): Jennifer Hochscherf, D. Lindenblatt, B. Witulski, Robin Birus, Dagmar Aichele, Christelle Marminon, Zouhair Bouaziz, Marc Le Borgne, Joachim Jose, Karsten Niefind
Software Mentions: 1
Published: over 8 years ago

10.1098/rsta.2018.0422

Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping
Cited by: 26
Author(s): S.E. Thomas, P. Collins, Rory Hennell James, V. Mendes, Sitthivut Charoensutthivarakul, Chris J. Radoux, Chris Abell, Anthony G. Coyne, Andres Floto, Frank von Delft, Tom L. Blundell
Software Mentions: 1
Published: over 7 years ago

10.1093/pcp/pcv167

Identification of the Elusive Pyruvate Reductase ofChlamydomonas reinhardtiiChloroplasts
Cited by: 18
Author(s): Steven J. Burgess, Hussein Taha, Justin A. Yeoman, Oksana Iamshanova, Kher Xing Chan, Marko Boehm, Volker Behrends, Jacob G. Bundy, Wojciech Białek, James W. Murray, Peter J. Nixon
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pbio.3000780

Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes
Cited by: 43
Author(s): Jennifer N. Wells, Robert Buschauer, Timur Mackens-Kiani, Katharina Best, Hanna Kratzat, Otto Berninghausen, Thomas Becker, Wendy V. Gilbert, Jingdong Cheng, Roland Beckmann
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.3000104

Spliceosomal Prp8 intein at the crossroads of protein and RNA splicing
Cited by: 25
Author(s): Cathleen M. Green, Zhong Li, Aaron D. Smith, О. С. Новікова, Valjean R. Bacot‐Davis, Gao Feng-shan, Saiyang Hu, Nilesh K. Banavali, Dennis J. Thiele, Hongmin Li, Marlene Belfort
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pbio.1001472

An Enzyme-Catalyzed Multistep DNA Refolding Mechanism in Hairpin Telomere Formation
Cited by: 14
Author(s): Ke Shi, Wai Mun Huang, Hideki Aihara
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.1001678

Structure of UreG/UreF/UreH Complex Reveals How Urease Accessory Proteins Facilitate Maturation of Helicobacter pylori Urease
Cited by: 87
Author(s): Y.H. Fong, Ho Chun Wong, Man Hon Yuen, Pak Ho Lau, Yu Wai Chen, Kam-Bo Wong
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pbio.3000260

Structures suggest a mechanism for energy coupling by a family of organic anion transporters
Cited by: 37
Author(s): Jonathan B. Leano, Samir Batarni, Jacob Eriksen, Narinobu Juge, John E. Pak, Tomomi Kimura‐Someya, Yaneth Robles-Colmenares, Yoshinori Moriyama, Robert M. Stroud, Robert H. Edwards
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.1001750

The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB
Cited by: 118
Author(s): Yasar Luqman Ahmed, Jennifer Gerke, Hee-Soo Park, Özgür Bayram, Piotr Neumann, Min Ni, Achim Dickmanns, Sun-Chang Kim, Jae‐Hyuk Yu, Gerhard H. Braus, Ralf Ficner
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.1002192

Single Turnover Autophosphorylation Cycle of the PKA RIIβ Holoenzyme
Cited by: 29
Author(s): Ping Zhang, Matthias J. Knape, Lalima G. Ahuja, Malik M. Keshwani, Charles C. King, Mira Sastri, Friedrich W. Herberg, Susan S. Taylor
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pbio.3000748

Cryo-EM structure of the nonameric CsgG-CsgF complex and its implications for controlling curli biogenesis in Enterobacteriaceae
Cited by: 9
Author(s): Manfeng Zhang, Huigang Shi, Xuemei Zhang, Xinzheng Zhang, Yihua Huang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.1002356

Dissecting the Molecular Mechanism of Nucleotide-Dependent Activation of the KtrAB K+ Transporter
Cited by: 18
Author(s): András Szöllősi, Ricardo S. Vieira-Pires, Celso M. Teixeira-Duarte, Rita Rocha, J.H. Morais-Cabral
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pbio.3001295

Structures of the human cholecystokinin 1 (CCK1) receptor bound to Gs and Gq mimetic proteins provide insight into mechanisms of G protein selectivity
Cited by: 35
Author(s): Jesse I. Mobbs, Matthew J. Belousoff, Kaleeckal G. Harikumar, Sarah Piper, Xiaomeng Xu, Sebastian G.B. Furness, Hari Venugopal, Arthur Christopoulos, Radostin Danev, Denise Wootten, David M. Thal, Laurence J. Miller, Patrick M. Sexton
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.1001493

Mechanistic Insights Revealed by the Crystal Structure of a Histidine Kinase with Signal Transducer and Sensor Domains
Cited by: 133
Author(s): Chen Wang, Jiayan Sang, Jiawei Wang, Ming-yan Su, Jennifer S. Downey, Qinggan Wu, Shida Wang, Yongfei Cai, Xiaozheng Xu, Jun Wu, Dilani B. Senadheera, Dennis G. Cvitkovitch, Lin Chen, Steven D. Goodman, Aidong Han
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.1001860

RNA Mimicry by the Fap7 Adenylate Kinase in Ribosome Biogenesis
Cited by: 39
Author(s): J. Loc'h, Magali Blaud, S. Réty, Simon Lebaron, P Deschamps, Joseph Bareille, Julie Jombart, Julien Robert-Paganin, Lila Delbos, Florian Chardon, Elodie Zhang, Clément Charenton, David Tollervey, Nicolas Leulliot
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.3000204

A non-natural nucleotide uses a specific pocket to selectively inhibit telomerase activity
Cited by: 14
Author(s): Wilnelly Hernandez-Sanchez, Wei Huang, Brian Plucinsky, Nelson Garcia-Vazquez, Nathaniel Robinson, William P. Schiemann, Anthony J. Berdis, Emmanuel Skordalakes, Derek Taylor
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.1001261

Superhelical Architecture of the Myosin Filament-Linking Protein Myomesin with Unusual Elastic Properties
Cited by: 36
Author(s): Nikos Pinotsis, Spyros D. Chatziefthimiou, Felix Berkemeier, Fabienne Beuron, Irene M. Mavridis, Petr V. Konarev, Dmitri I. Svergun, Edward P. Morris, Matthias Rief, Matthias Wilmanns
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pbio.3000038

Structure of the Macrobrachium rosenbergii nodavirus: A new genus within the Nodaviridae?
Cited by: 33
Author(s): Ken Ho, Mads Gabrielsen, Poay Ling Beh, Chare Li Kueh, Qiu Xian Thong, James Streetley, Wen Siang Tan, David Bhella
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.1001101

Ligand Activation of the Prokaryotic Pentameric Ligand-Gated Ion Channel ELIC
Cited by: 100
Author(s): Iwan Zimmermann, Raimund Dutzler
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pbio.3001231

The structure of MgtE in the absence of magnesium provides new insights into channel gating
Cited by: 5
Author(s): Fengxiang Jin, Minxuan Sun, Takashi Fujii, Yasuhiro Yamada, Jin Wang, Andrés D. Maturana, Miki Wada, Shichen Su, Jinbiao Ma, H. Takeda, Tsukasa Kusakizako, Atsuhiro Tomita, Yoshiko Nakada-Nakura, Kehong Liu, T. Uemura, Yoshihiro Nomura, Koichi Ito, Osamu Nureki, Keiichi Namba, So Iwata, Ye Yu, Motoyuki Hattori
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.1001511

Structural Basis of Rap Phosphatase Inhibition by Phr Peptides
Cited by: 50
Author(s): Francisca Gallego del Sol, Alberto Marina
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.1002393

Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels
Cited by: 39
Author(s): Carlo Bertozzi, Iwan Zimmermann, Sibylle Engeler, R.J.C. Hilf, Raimund Dutzler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pbio.3000139

Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor-binding head domains
Cited by: 32
Author(s): Hannah L. Turner, Jesper Pallesen, Shanshan Lang, Sandhya Bangaru, Sarah Urata, Sheng Li, Christopher A. Cottrell, Charles A. Bowman, James E. Crowe, Ian A. Wilson, Andrew B. Ward
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.1001034

A Structural and Mutagenic Blueprint for Molecular Recognition of Strychnine and d-Tubocurarine by Different Cys-Loop Receptors
Cited by: 88
Author(s): Marijke Brams, Anshul A. Pandya, Dmitry Kuzmin, René van Elk, L. Krijnen, Jerrel L. Yakel, Victor I. Tsetlin, August B. Smit, Chris Ulens
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.3000315

Atomic view into Plasmodium actin polymerization, ATP hydrolysis, and fragmentation
Cited by: 19
Author(s): Esa-Pekka Kumpula, A.J. Lopez, Leila Tajedin, Huijong Han, Inari Kursula
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pbio.3000096

Molecular understanding of calcium permeation through the open Orai channel
Cited by: 47
Author(s): Xiaofen Liu, Gao Wu, Yi Yu, Xiaozhe Chen, Renci Ji, Jing Lü, Xin Li, Xing Zhang, Xue Yang, Yuequan Shen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.3001370

Structures of the mycobacterial membrane protein MmpL3 reveal its mechanism of lipid transport
Cited by: 19
Author(s): Chih‐Chia Su, Philip A. Klenotic, Meng Cui, Meinan Lyu, Christopher E. Morgan, Edward Yu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.1001429

Inhibition of the Prokaryotic Pentameric Ligand-Gated Ion Channel ELIC by Divalent Cations
Cited by: 42
Author(s): Iwan Zimmermann, Alessandro Marabelli, Carlo Bertozzi, Lucia G. Sivilotti, Raimund Dutzler
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pbio.1000554

Domain Swapping in Allosteric Modulation of DNA Specificity
Cited by: 20
Author(s): Chad K. Park, Hemant Joshi, Alka Agrawal, M. Imran Ghare, E.J. Little, Pete Dunten, Jurate Bitinaite, Nancy C. Horton
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.3000367

Structural basis for recognition of the tumor suppressor protein PTPN14 by the oncoprotein E7 of human papillomavirus
Cited by: 40
Author(s): Hye-Yeoung Yun, Min Wook Kim, Hye Seon Lee, Wantae Kim, Ji Hye Shin, Hyunmin Kim, Hang‐Sik Shin, Hwangseo Park, Byung‐Ha Oh, Won Kon Kim, Kwang‐Hee Bae, Sang Chul Lee, Eun Woo Lee, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pcbi.1000911

Evidence of Functional Protein Dynamics from X-Ray Crystallographic Ensembles
Cited by: 33
Author(s): Jonathan E. Kohn, Pavel V. Afonine, Jory Z. Ruscio, Paul D. Adams, Teresa Head‐Gordon
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1004507

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit
Cited by: 78
Author(s): D.A. Keedy, James S. Fraser, Henry van den Bedem
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1008750

ArdC, a ssDNA-binding protein with a metalloprotease domain, overpasses the recipient hsdRMS restriction system broadening conjugation host range
Cited by: 16
Author(s): Lorena González-Montes, Irene del Campo, M. Pilar Garcillán-Barcia, Fernando de la Cruz, Gabriel Moncalián
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1003102

Selective Pressure Causes an RNA Virus to Trade Reproductive Fitness for Increased Structural and Thermal Stability of a Viral Enzyme
Cited by: 50
Author(s): Moshe Dessau, Daniel H. Goldhill, Robert McBride, Paul Turner, Yorgo Modis
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1003239

Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice
Cited by: 67
Author(s): Qing-Feng Chen, Xiang-Song Chen, Quan Wang, Faben Zhang, Zhiyong Lou, Qifa Zhang, Dao‐Xiu Zhou
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1004544

Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome
Cited by: 97
Author(s): Jutta Vogelmann, Antoine Le Gall, Stephanie Déjardin, Frédéric Allemand, Adrien Gamot, Gilles Labesse, Olivier Cuvier, Nicolas Nègre, Martin Cohen‐Gonsaud, Emmanuel Margeat, Marcelo Nöllmann
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pntd.0006301

Evaluation of the Trypanosoma brucei 6-oxopurine salvage pathway as a potential target for drug discovery
Cited by: 27
Author(s): Eva Doleželová, D. Teran, Ondřej Gahura, Zuzana Kotrbová, Michaela Procházková, Dianne T. Keough, Petr Špaček, Dana Hocková, Luke W. Guddat, Alena Zı́ková
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0007894

Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase
Cited by: 43
Author(s): Hideaki Shimizu, Akatsuki Saito, Junko Mikuni, Emi E. Nakayama, Hiroo Koyama, Teruki Honma, Mikako Shirouzu, S. Sekine, Tatsuo Shioda
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0007815

Crystal structures of Triosephosphate Isomerases from Taenia solium and Schistosoma mansoni provide insights for vaccine rationale and drug design against helminth parasites
Cited by: 6
Author(s): Pedro Jiménez‐Sandoval, Eduardo Castro‐Torres, Rogelio González‐González, Corina Díaz‐Quezada, Misraim Gurrola, Laura D. Camacho-Manriquez, Lucia Leyva-Navarro, Luis G. Brieba
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0003644

Structural Analysis of the Synthetic Duffy Binding Protein (DBP) Antigen DEKnull Relevant for Plasmodium vivax Malaria Vaccine Design
Cited by: 37
Author(s): Edwin Chen, Nichole D. Salinas, Francis B. Ntumngia, John Adams, Niraj H. Tolia
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pntd.0005932

Structural basis for the high specificity of a Trypanosoma congolense immunoassay targeting glycosomal aldolase
Cited by: 13
Author(s): Joar Pinto, Steven Odongo, Felicity Lee, Vaiva Gaspariunaite, Serge Muyldermans, Stefan Magez, Yann G.J. Sterckx
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0005084

Protein Translation Enzyme lysyl-tRNA Synthetase Presents a New Target for Drug Development against Causative Agents of Loiasis and Schistosomiasis
Cited by: 25
Author(s): Arvind Sharma, Manmohan Sharma, Manickam Yogavel, Amit Sharma
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0076983

Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
Cited by: 51
Author(s): Kazuki Kato, Ryohei Ishii, Eiji Gotō, Ryuichiro Ishitani, Fuminori Tokunaga, Osamu Nureki
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0026845

Crystal Structure of Outer Membrane Protein NMB0315 from Neisseria meningitidis
Cited by: 18
Author(s): Xiangyu Wang, Xue Yang, Chi Yang, Zhenhua Wu, Hui Xu, Yuequan Shen
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0164279

Functional and Structural Characterization of Purine Nucleoside Phosphorylase from Kluyveromyces lactis and Its Potential Applications in Reducing Purine Content in Food
Cited by: 18
Author(s): Durga Mahor, Anu Priyanka, Gandham S. Prasad, Krishan Gopal Thakur
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0093156

Crystal Structure of ORF210 from E. coli O157:H1 Phage CBA120 (TSP1), a Putative Tailspike Protein
Cited by: 16
Author(s): Chen Chen, Patrick Bales, Julia Greenfield, Ryan D. Heselpoth, Daniel Nelson, Osnat Herzberg
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0134576

Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin
Cited by: 24
Author(s): Fengyun Ni, Elena Kondrashkina, Qinghua Wang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0017946

A Transient Homotypic Interaction Model for the Influenza A Virus NS1 Protein Effector Domain
Cited by: 43
Author(s): Philip S. Kerry, Juan Ayllón, Margaret Taylor, C. Hass, Alan P. Lewis, Adolfo Garcı́a-Sastre, R. E. Randall, Benjamin G. Hale, Rosemary Russell
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0019589

Crystal Structures of Two Aminoglycoside Kinases Bound with a Eukaryotic Protein Kinase Inhibitor
Cited by: 23
Author(s): D.H. Fong, Bing Xiong, Ji-Young Hwang, Albert M. Berghuis
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0168019

Structural Analysis of Thymidylate Synthase from Kaposi’s Sarcoma-Associated Herpesvirus with the Anticancer Drug Raltitrexed
Cited by: 18
Author(s): Yong Mi Choi, Hyun Ku Yeo, Young Woo Park, Jae Young Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0115995

Crystal Structure of Human Importin-α1 (Rch1), Revealing a Potential Autoinhibition Mode Involving Homodimerization
Cited by: 20
Author(s): Hideyuki Miyatake, Akira Sanjoh, Satoru Unzai, Go Matsuda, Yasutoshi Tatsumi, Yoichi Miyamoto, Naoshi Dohmae, Yoko Aida
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0010482

Crystal Structure of the Neutralizing Llama VHH D7 and Its Mode of HIV-1 gp120 Interaction
Cited by: 32
Author(s): Andreas Hinz, D. Lutje Hulsik, Anna Forsman, Willie W. L. Koh, Hassan Belrhali, Andrea Gorlani, Hans de Haard, Robin A. Weiss, Theo Verrips, Winfríed Weissenhorn
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0010013

The Crystal Structure of PPIL1 Bound to Cyclosporine A Suggests a Binding Mode for a Linear Epitope of the SKIP Protein
Cited by: 23
Author(s): C. Stegmann, Reinhard Lührmann, Markus C. Wahl
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0133370

Structural Basis for the Inhibition of a Phospholipase A2-Like Toxin by Caffeic and Aristolochic Acids
Cited by: 30
Author(s): Carlos A. H. Fernandes, Filomena Cardoso, Walter Luís Garrido Cavalcante, Andreimar M. Soares, Maeli Dal-Pai-Silva, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0042775

Structural Insights into the Assembly of CARMA1 and BCL10
Cited by: 34
Author(s): Siwei Li, Xue Yang, Jiushu Shao, Yuequan Shen
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0188620

Tetrahydrocarbazoles are a novel class of potent P-type ATPase inhibitors with antifungal activity
Cited by: 19
Author(s): Maike Bublitz, Lasse Kjellerup, Karen O'Hanlon Cohrt, Sandra Gordon, Anne Louise Mortensen, Johannes Clausen, T. David Pallin, John Bondo Hansen, Anja Thoe Fuglsang, William Dalby‐Brown, Anne-Marie Lund Winther
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0217292

Structural analysis of Cytochrome P450 BM3 mutant M11 in complex with dithiothreitol
Cited by: 4
Author(s): Karla Frydenvang, Marlies C. A. Verkade‐Vreeker, Floor Dohmen, Jan N. M. Commandeur, Maria Rafiq, Osman Mirza, Flemming Steen Jørgensen, Daan P. Geerke
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0034354

Rational Design and Characterization of D-Phe-Pro-D-Arg-Derived Direct Thrombin Inhibitors
Cited by: 22
Author(s): Ana C. Figueiredo, Cristina C. Clement, Sheuli Zakia, Julian A. Gingold, Manfred Philipp, Pedro José Barbosa Pereira
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0071963

The Role of Protein Denaturation Energetics and Molecular Chaperones in the Aggregation and Mistargeting of Mutants Causing Primary Hyperoxaluria Type I
Cited by: 46
Author(s): Noel Mesa‐Torres, Israel Fabelo-Rosa, Débora Riverol, Cristina Yunta, Armando Albert, Eduardo Salido, Ángel L. Pey
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0055697

A Study on the Interaction of Rhodamine B with Methylthioadenosine Phosphorylase Protein Sourced from an Antarctic Soil Metagenomic Library
Cited by: 24
Author(s): Paulina Bartasun, Hubert Cieśliński, A. Bujacz, Anna Wierzbicka-Woś, Józef Kur
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0197635

Structural study reveals the temperature-dependent conformational flexibility of Tk-PTP, a protein tyrosine phosphatase from Thermococcus kodakaraensis KOD1
Cited by: 9
Author(s): Hye-Yeoung Yun, Jinhyuk Lee, Hyunmin Kim, Hyojung Ryu, Hang‐Sik Shin, Byung‐Ha Oh, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0131218

Serendipitous SAD Solution for DMSO-Soaked SOCS2-ElonginC-ElonginB Crystals Using Covalently Incorporated Dimethylarsenic: Insights into Substrate Receptor Conformational Flexibility in Cullin RING Ligases
Cited by: 14
Author(s): M.S. Gadd, Emil Bulatov, A. Ciulli
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0061303

Two Crystal Structures of Bombyx mori Lipoprotein 3 - Structural Characterization of a New 30-kDa Lipoprotein Family Member
Cited by: 6
Author(s): A.J. Pietrzyk, A. Bujacz, Jochen Mueller‐Dieckmann, Małgorzata Łochyńska, Mariusz Jaskólski, G. Bujacz
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0027599

The PHD Finger of Human UHRF1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers
Cited by: 39
Author(s): Nada Lallous, Pierre Legrand, A.G. McEwen, Santiago Ramón‐Maiques, Jean‐Pierre Samama, Catherine Birck
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0014165

Crystal Structure of the 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase•Dihydropteroate Synthase Bifunctional Enzyme from Francisella tularensis
Cited by: 25
Author(s): Charles W. Pemble, Perdeep K. Mehta, Smriti Mehra, Zhenmei Li, Amanda Nourse, Richard Lee, Stephen W. White
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0144174

Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells
Cited by: 17
Author(s): Karen M. Plevock, Brian J. Galletta, Kevin C. Slep, Nasser M. Rusan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0187544

Structure and function of a CE4 deacetylase isolated from a marine environment
Cited by: 32
Author(s): Tina R. Tuveng, U. Rothweiler, D.B.R.K. Gupta Udatha, Gustav Vaaje‐Kolstad, Arne O. Smalås, Vincent G. H. Eijsink
Software Mentions: 1
Published: almost 9 years ago

Projects: cran: PHENIX

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