cran: PHENIX | Projects | Ecosyste.ms: Papers

10.7554/eLife.56178

Nucleosome-CHD4 chromatin remodeler structure maps human disease mutations
Cited by: 45
Author(s): Lucas Farnung, Moritz Ochmann, Patrick Cramer
Software Mentions: 1
Published: over 6 years ago

Antiparallel protocadherin homodimers use distinct affinity- and specificity-mediating regions in cadherin repeats 1-4
Cited by: 50
Author(s): John M. Nicoludis, Bennett E Vogt, Anna G. Green, Charlotta Schärfe, Debora S. Marks, Rachelle Gaudet
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.58622

The dynamic nature of the human origin recognition complex revealed through five cryoEM structures
Cited by: 19
Author(s): Matt J. Jaremko, Kin Fan On, Dennis R. Thomas, Bruce Stillman, Leemor Joshua‐Tor
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.55517

Cryo-EM structure in situ reveals a molecular switch that safeguards virus against genome loss
Cited by: 20
Author(s): Oliver W. Bayfield, Alasdair C. Steven, A.A. Antson
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms131114326

Molecular Mechanisms of Pharmaceutical Drug Binding into Calsequestrin
Cited by: 8
Author(s): Arun K Subra, Mark S. Nissen, K.M. Lewis, Ashwin K Muralidharan, E.J. Sanchez, Hendrik Milting, Chulho Kang
Software Mentions: 1
Published: almost 14 years ago

10.3390/ijms15034523

A Preliminary X-ray Study of Murine Tnfaip8/Oxi-α
Cited by: 4
Author(s): Daeun Lee, Mi-Sun Kim, Jimin Park, Gil‐Ja Jhon, Jin H. Son, Dongkun Shin
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms151120736

Structures of the Inducer-Binding Domain of Pentachlorophenol-Degrading Gene Regulator PcpR from Sphingobium chlorophenolicum
Cited by: 17
Author(s): Robert P. Hayes, Timothy W. Moural, K.M. Lewis, David Onofrei, Luying Xun, ChulHee Kang
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms17070988

The X-ray Structures of Six Octameric RNA Duplexes in the Presence of Different Di- and Trivalent Cations
Cited by: 8
Author(s): Michelle Schaffer, Guanya Peng, Bernhard Spingler, Joachim Schnabl, Meitian Wang, V. Oliéric, Roland K. O. Sigel
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms17091539

Characterization of Post-Translational Modifications to Calsequestrins of Cardiac and Skeletal Muscle
Cited by: 13
Author(s): K.M. Lewis, Gerhard R. Munske, S.S. Byrd, Jeehoon Kang, Hyun Jai Cho, Eduardo Rı́os, ChulHee Kang
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms18071464

Structural Elements Recognized by Abacavir-Induced T Cells
Cited by: 19
Author(s): Daniel Yerly, Y.A. Pompeu, Ryan J. Schutte, Klara Kristin Eriksson, Anette Strhyn, A.W. Bracey, Søren Buus, David A. Ostrov
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms19092796

CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex
Cited by: 9
Author(s): Yu‐Wen Chen, Roshan Satange, Pei-Ching Wu, Cyong-Ru Jhan, Chung-ke Chang, Kuang‐Ren Chung, Michael J. Waring, Sheng-Wei Lin, Li-Ching Hsieh, Ming-Hon Hou
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms20133247

Crystal Structure of Phosphoserine BlaC from Mycobacterium tuberculosis Inactivated by Bis(Benzoyl) Phosphate
Cited by: 1
Author(s): Timothy W. Moural, Dawanna S. White, Cindy J. Choy, ChulHee Kang, Clifford E. Berkman
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20174245

Structural Insights into the Interaction of Cytochrome P450 3A4 with Suicide Substrates: Mibefradil, Azamulin and 6′,7′-Dihydroxybergamottin
Cited by: 16
Author(s): Irina F. Sevrioukova
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174301

Active Site Architecture and Reaction Mechanism Determination of Cold Adapted β-d-galactosidase from Arthrobacter sp. 32cB
Cited by: 11
Author(s): Maria Rutkiewicz, A. Bujacz, Marta Wanarska, Anna Wierzbicka-Woś, Hubert Cieśliński
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21010308

In Situ Proteolysis Condition-Induced Crystallization of the XcpVWX Complex in Different Lattices
Cited by: 1
Author(s): Yichen Zhang, Shu Wang, Zongchao Jia
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21010280

GTP Preference of d-Glycero-α-d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis
Cited by: 6
Author(s): Suwon Kim, Mi Sun Kim, Seri Jo, Dongkun Shin
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21030915

Phenylthiourea Binding to Human Tyrosinase-Related Protein 1
Cited by: 11
Author(s): Xuelei Lai, Harry J. Wichers, Montserrat Soler-López, Bauke W. Dijkstra
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21051689

N-terminal Backbone Pairing Shifts in CCL5-12AAA14 Dimer Interface: Structural Significance of the FAY Sequence
Cited by: 1
Author(s): Jin-Ye Li, Yi‐Chen Chen, Yi-Zong Lee, Chun‐Hsiang Huang, Shih‐Che Sue
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21113940

The Structural Basis of the Binding of Various Aminopolycarboxylates by the Periplasmic EDTA-Binding Protein EppA from Chelativorans sp. BNC1
Cited by: 3
Author(s): K.M. Lewis, C.L. Greene, S.A. Sattler, BuHyun Youn, Luying Xun, ChulHee Kang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21175977

Lard Injection Matrix for Serial Crystallography
Cited by: 25
Author(s): Ki Hyun Nam
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21197166

Repurposing Benzbromarone for Familial Amyloid Polyneuropathy: A New Transthyretin Tetramer Stabilizer
Cited by: 15
Author(s): Ellen Y Cotrina, Â. Oliveira, José P. Leite, Jordi Llop, Luı́s Gales, Jordi Quintana, Isabel Cardoso, Gemma Arsequell
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21197375

Crystal Structure of Non-Structural Protein 10 from Severe Acute Respiratory Syndrome Coronavirus-2
Cited by: 45
Author(s): Annika Rogstam, Maria Nyblom, Steffan Wittrup Christensen, C. Sele, V. Talibov, Therese Lindvall, Anna Andersson Rasmussen, Ingemar André, S.Z. Fisher, Wolfgang Knecht, Frank Kozielski
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21207787

High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtii—An Enzyme Involved in the Photosynthetic Calvin-Benson Cycle
Cited by: 3
Author(s): Théo Le Moigne, Pierre Crozet, Stéphane D. Lemaire, Julien Henri
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21218186

Structural Insight on Functional Regulation of Human MINERVA Protein
Cited by: 1
Author(s): Hyunggu Hahn, Dong‐Eun Lee, Dong Man Jang, Jiyoun Kim, Yeon Lee, Heesun Cheong, Byung Woo Han, Hyoun Sook Kim
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218367

The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms
Cited by: 1
Author(s): Hannes M. Beyer, Salla I. Virtanen, A. Sesilja Aranko, Kornelia M. Mikula, G.T. Lountos, Alexander Wlodawer, O. H. Samuli Ollila, Hideo Iwaï
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21249377

Structural Basis for Design of New Purine-Based Inhibitors Targeting the Hydrophobic Binding Pocket of Hsp90
Cited by: 6
Author(s): Sang Chul Shin, Ashraf K. El-Damasy, Ju Hyeon Lee, Seon Hee Seo, Ji Hyun Kim, Young Ho Seo, Yuri Lee, Yu Ji, Eun Kyoung Bang, Eunice EunKyeong Kim, Gyochang Keum
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22020852

Rational Design of CYP3A4 Inhibitors: A One-Atom Linker Elongation in Ritonavir-Like Compounds Leads to a Marked Improvement in the Binding Strength
Cited by: 14
Author(s): Eric R. Samuels, Irina F. Sevrioukova
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22094519

Structural Fluctuations of the Human Proteasome α7 Homo-Tetradecamer Double Ring Imply the Proteasomal α-Ring Assembly Mechanism
Cited by: 1
Author(s): Chihong Song, Tadashi Satoh, Taichiro Sekiguchi, Koichi Kato, Kazuyoshi Murata
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115651

Structure and Dynamics of Meprin β in Complex with a Hydroxamate-Based Inhibitor
Cited by: 5
Author(s): Miriam Linnert, Claudia Fritz, Christian Jäger, Dagmar Schlenzig, Daniel Ramsbeck, Martin Kleinschmidt, Michael Wermann, Hans‐Ulrich Demuth, C. Parthier, Stephan Schilling
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115831

Structural Basis for the Diminished Ligand Binding and Catalytic Ability of Human Fetal-Specific CYP3A7
Cited by: 7
Author(s): Irina F. Sevrioukova
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115668

The Importance of N186 in the Alpha-1-Antitrypsin Shutter Region Is Revealed by the Novel Bologna Deficiency Variant
Cited by: 1
Author(s): Riccardo Ronzoni, Ilaria Ferrarotti, Emanuela D’Acunto, Alice Maria Balderacchi, Stefania Ottaviani, David A. Lomas, James A. Irving, Elena Miranda, Annamaria Fra
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22136861

Plumbagin, a Natural Product with Potent Anticancer Activities, Binds to and Inhibits Dihydroorotase, a Key Enzyme in Pyrimidine Biosynthesis
Cited by: 19
Author(s): Hong‐Hsiang Guan, Yen‐Hua Huang, En‐Shyh Lin, Chun‐Jung Chen, Cheng-Yang Huang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22157859

Structural Insights for the Stronger Ability of Shrimp Ferritin to Coordinate with Heavy Metal Ions as Compared to Human H-Chain Ferritin
Cited by: 6
Author(s): Yingjie Wang, Jiachen Zang, Chengtao Wang, Xiuqing Zhang, Guanghua Zhao
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22179128

Coordination of Di-Acetylated Histone Ligands by the ATAD2 Bromodomain
Cited by: 9
Author(s): Chiara M. Evans, Margaret Phillips, Kiera L. Malone, Marco Tonelli, Gabriel Cornilescu, Claudia C. Cornilescu, Simon J. Holton, Mátyás Gorjánácz, Liping Wang, Samuel Carlson, Jay C. Nix, Borries Demeler, John L. Markley, Karen C. Glass
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms221910854

Characterization of the Chimeric PriB-SSBc Protein
Cited by: 7
Author(s): En‐Shyh Lin, Yen‐Hua Huang, Cheng-Yang Huang
Software Mentions: 1
Published: about 5 years ago

10.1016/j.isci.2021.102951

Structures of heat shock factor trimers bound to DNA
Cited by: 6
Author(s): Feng Niu, Feng Han, Sheng Wang, Avinash S. Punekar, Rudolf Ladenstein, Dacheng Wang, Qinghua Zhang, Jingjin Ding, Wei Liu
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.9223

A natural small molecule, catechol, induces c-Myc degradation by directly targeting ERK2 in lung cancer
Cited by: 28
Author(s): Do Young Lim, Seung Ho Shin, Mee-Hyun Lee, Margarita Malakhova, Igor Kurinov, Qiong Wu, Jinglong Xu, Yanan Jiang, Ziming Dong, Kangdong Liu, Kun Yeong Lee, Ki Beom Bae, Bu Young Choi, Yibin Deng, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.14540

Carcinoma-risk variant of EBNA1 deregulates Epstein-Barr Virus episomal latency
Cited by: 38
Author(s): Jayaraju Dheekollu, Kimberly A. Malecka, Andreas Wiedmer, Henri Jacques Delecluse, Alan Kwok Shing Chiang, Dario C. Altieri, Troy E. Messick, Paul M. Lieberman
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.9527

Antivascular and antitumor properties of the tubulin-binding chalcone TUB091
Cited by: 47
Author(s): María Dolores Canela, Sam Noppen, Oskía Bueno, A.E. Prota, Katja Bargsten, Gonzalo Sáez-Calvo, María Luisa Jimeno, Mohammed Benkheil, Doménico Ribatti, Sonsoles Velázquez, María‐José Camarasa, J. Fernando Díaz, Michel O. Steinmetz, Eva-Marı́a Priego, M J Pérez-Pérez, Sandra Liekens
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.14780

The conformational changes of Zika virus methyltransferase upon converting SAM to SAH
Cited by: 23
Author(s): Hailiang Zhou, Fenghua Wang, Haofeng Wang, Cheng Chen, Tianqing Zhang, Xu Han, Deping Wang, Chen Chen, Chunlei Wu, Wei Xie, Zefang Wang, Lei Zhang, Lanfeng Wang, Haitao Yang
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.23223

The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA capping
Cited by: 7
Author(s): Chatrin Chatrin, Sandeep K. Talapatra, Bruno Canard, Frank Kozielski
Software Mentions: 1
Published: almost 9 years ago

10.1098/rsob.120120

Mechanistic and structural basis for inhibition of thymidylate synthase ThyX
Cited by: 36
Author(s): Tamara Basta, Yap Boum, Julien Briffotaux, Hubert F. Becker, Isabelle Lamarre-Jouenne, Jean‐Christophe Lambry, Stéphane Skouloubris, Ursula Liebl, Marc Graille, Herman van Tilbeurgh, Hannu Myllykallio
Software Mentions: 1
Published: about 14 years ago

10.1098/rsob.130172

Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin MuRF1
Cited by: 17
Author(s): Barbara Franke, Alexander Gasch, Daniel Salazar Rodríguez, Mohamed Chami, Muzamil Majid Khan, Rüdiger Rudolf, Jaclyn Bibby, Akira Hanashima, Julius Bogomolovas, Eleonore von Castelmur, Daniel J. Rigden, Isabel Usón, Siegfried Labeit, Olga Mayans
Software Mentions: 1
Published: over 12 years ago

10.1098/rsob.140041

Titin kinase is an inactive pseudokinase scaffold that supports MuRF1 recruitment to the sarcomeric M-line
Cited by: 52
Author(s): Julius Bogomolovas, Alexander Gasch, Felix Šimkovic, Daniel J. Rigden, Siegfried Labeit, Olga Mayans
Software Mentions: 1
Published: over 12 years ago

10.1016/j.jsb.2016.06.018

Structural and calorimetric studies demonstrate that the hepatocyte nuclear factor 1β (HNF1β) transcription factor is imported into the nucleus via a monopartite NLS sequence
Cited by: 4
Author(s): Mareike M. Wiedmann, Shintaro Aibara, David R. Spring, Murray Stewart, James D. Brenton
Software Mentions: 1
Published: about 10 years ago

10.1016/j.jsb.2021.107752

Crystal structure of the anti-CRISPR repressor Aca2
Cited by: 6
Author(s): B. F. Usher, Nils Birkholz, Izaak N Beck, Robert D. Fagerlund, Simon A. Jackson, Peter C. Fineran, Tim R. Blower
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jsb.2016.07.007

The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region
Cited by: 3
Author(s): Shintaro Aibara, Xiao Chen Bai, Murray Stewart
Software Mentions: 1
Published: about 10 years ago

10.1016/j.yjsbx.2021.100044

Structural basis of enzyme activity regulation by the propeptide of l-lysine α-oxidase precursor from Trichoderma viride
Cited by: 2
Author(s): Masaki Kawamura, Norihisa Ito, Yuya Matsumoto, Masaya Saito, Takashi Tamura, Hitoshi Kusakabe, Kenji Inagaki, Katsumi Imada
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.yjsbx.2020.100021

Cryo-EM structure of the prefusion state of canine distemper virus fusion protein ectodomain
Cited by: 4
Author(s): David Kalbermatter, Neeta Shrestha, Flavio M. Gall, Marianne Wyss, Rainer Riedl, Philippe Plattet, Dimitrios Fotiadis
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.yjsbx.2021.100049

Structural characterization of two solute-binding proteins for N,N′-diacetylchitobiose/N,N′,N′′-triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7
Cited by: 0
Author(s): Takafumi Itoh, Misaki Yaguchi, Akari Nakaichi, Moe Yoda, Takao Hibi, Hisashi Kimoto
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.yjsbx.2020.100035

FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations
Cited by: 13
Author(s): Haley M. Wilt, Ping Yü, Kemin Tan, Yun‐Xing Wang, Jason R. Stagno
Software Mentions: 1
Published: almost 7 years ago

10.1007/s10969-014-9177-y

Crystal structure of the eukaryotic translation initiation factor 2A from Schizosaccharomyces pombe
Cited by: 7
Author(s): Kazuhiro Kashiwagi, Takuhiro Ito, Shigeyuki Yokoyama
Software Mentions: 1
Published: over 12 years ago

10.1107/S1600577516017343

Conformational variation of proteins at room temperature is not dominated by radiation damage
Cited by: 48
Author(s): Silvia Russi, Ana González, L.R. Kenner, D.A. Keedy, James S. Fraser, Henry van den Bedem
Software Mentions: 1
Published: almost 10 years ago

10.1107/S1600577520008735

Current status and future opportunities for serial crystallography at MAX IV Laboratory
Cited by: 3
Author(s): Anastasya Shilova, Hugo Lebrette, Oskar Aurelius, Nan Jiang, M. Welin, Rebeka Kovačič, Swagatha Ghosh, Cecilia Safari, Ross J. Friel, Mirko Milas, Zdeněk Matěj, Martin Högbom, Gisela Brändén, Marco Kloos, Robert L. Shoeman, Bruce Doak, Thomas Ursby, Maria Håkansson, D.T. Logan, U. Muêller
Software Mentions: 1
Published: about 6 years ago

10.1107/S0909049513020815

Fundamental studies for the proton polarization technique in neutron protein crystallography
Cited by: 5
Author(s): Ichiro Tanaka, Katsuhiro Kusaka, Toshiyuki Chatake, Nobuo Nakabayashi
Software Mentions: 1
Published: about 13 years ago

10.1107/S0909049513021845

Evaluation of performance for IBARAKI biological crystal diffractometer iBIX with new detectors
Cited by: 41
Author(s): Katsuhiro Kusaka, Takamitsu Hosoya, Taro Yamada, Katsuaki Tomoyori, Takashi Ohhara, Masaki Katagiri, Kazuo Kurihara, Ichiro Tanaka, Nobuo Nakabayashi
Software Mentions: 1
Published: about 13 years ago

10.1107/S1600577515004002

Characterization and use of the spent beam for serial operation of LCLS
Cited by: 17
Author(s): Sébastien Boutet, L. Foucar, Thomas R. M. Barends, Sabine Botha, R. Bruce Doak, Jason E. Koglin, Marc Messerschmidt, Karol Nass, Ilme Schlichting, M. Seibert, Robert L. Shoeman, Garth J. Williams
Software Mentions: 1
Published: over 11 years ago

10.1107/S1600577516016465

P13, the EMBL macromolecular crystallography beamline at the low-emittance PETRA III ring for high- and low-energy phasing with variable beam focusing
Cited by: 141
Author(s): Michele Cianci, Gleb Bourenkov, Guillaume Pompidor, Ivars Karpičs, Johanna Kallio, Isabel Bento, Manfred Roessle, F. Cipriani, S. Fiedler, Thomas R. Schneider
Software Mentions: 1
Published: almost 10 years ago

10.1107/S0909049513020694

Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation
Cited by: 4
Author(s): Zuoqi Gai, Akiyoshi Nakamura, Yoshikazu Tanaka, Nagisa Hirano, Isao Tanaka, Min Yao
Software Mentions: 1
Published: about 13 years ago

10.1107/S0909049513022760

Crystal structure of the N-terminal domain of MinC dimerizedviadomain swapping
Cited by: 2
Author(s): Jin Yong An, Tae Kyun Kim, Kyoung Ryoung Park, Jung‐Kyu Lee, Hyung‐Seop Youn, Youngjin Lee, Jung Youn Kang, Gil Bu Kang, Soo Hyun Eom
Software Mentions: 1
Published: about 13 years ago

10.1107/S0909049513020700

X-ray structure determination and deuteration of nattokinase
Cited by: 12
Author(s): Yasuhide Yanagisawa, Toshiyuki Chatake, Sawa Naito, Tadanori Ohsugi, Chieko Yatagai, Hiroyuki Sumi, Akio Kawaguchi, Kaori Chiba-Kamosida, Megumi Ogawa, Tatsumi Adachi, Yukio Morimoto
Software Mentions: 1
Published: about 13 years ago

10.1107/S0909049513022164

Creation and structure determination of an artificial protein with three complete sequence repeats
Cited by: 2
Author(s): Motoyasu Adachi, R Shimizu, Ryota Kuroki, Michael Blaber
Software Mentions: 1
Published: about 13 years ago

10.1107/S0909049513021572

Structural studies of haemoglobin from pisces species shortfin mako shark (Isurus oxyrinchus)at 1.9 Å resolution
Cited by: 5
Author(s): Ramesh Pandian, S. Sundaresan, Pon. Sathya Moorthy, Mahalingam Balasubramanian, M. N. Ponnuswamy
Software Mentions: 1
Published: about 13 years ago

10.1128/JVI.01048-18

Structure-Based Classification Defines the Discrete Conformational Classes Adopted by the Arenaviral GP1
Cited by: 12
Author(s): Rhys Pryce, Weng M Ng, Antra Zeltina, Yasunori Watanabe, Kamel El Omari, Armin Wagner, Thomas A. Bowden
Software Mentions: 1
Published: almost 8 years ago

10.1128/JVI.00378-17

Structural Transitions of the Conserved and Metastable Hantaviral Glycoprotein Envelope
Cited by: 34
Author(s): Ilona Rissanen, Robert Stass, Antra Zeltina, Sai Li, Jussi Hepojoki, K. Harlos, Robert J.C. Gilbert, Juha T. Huiskonen, Thomas A. Bowden
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.00923-19

The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation
Cited by: 53
Author(s): Daniel Wrapp, Jason S. McLellan
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.02005-19

Structure and Characterization of Crimean-Congo Hemorrhagic Fever Virus GP38
Cited by: 18
Author(s): Akaash K. Mishra, Crystal L. Moyer, Dafna M. Abelson, Daniel J. Deer, Kamel El Omari, Ramona Duman, Leslie Lobel, Julius J. Lutwama, John M. Dye, Armin Wagner, Kartik Chandran, Robert W. Cross, Thomas W. Geisbert, Larry Zeitlin, Zachary A. Bornholdt, Jason S. McLellan
Software Mentions: 1
Published: over 6 years ago

10.1128/JVI.01357-16

Structure of an N276-Dependent HIV-1 Neutralizing Antibody Targeting a Rare V5 Glycan Hole Adjacent to the CD4 Binding Site
Cited by: 24
Author(s): Constantinos Kurt Wibmer, Jason Gorman, Colin Anthony, Nonhlanhla N. Mkhize, Aliaksandr Druz, Talita York, Stephen D. Schmidt, Jan Phillipus Lourens Labuschagne, Mark K. Louder, Robert T. Bailer, Salim Safurdeen. Abdool Karim, John R. Mascola, Carolyn Williamson, Penny L. Moore, Peter D. Kwong, Lynn Morris
Software Mentions: 1
Published: almost 10 years ago

10.1128/JVI.03586-14

Peptide-Dependent Recognition of HLA-B*57:01 by KIR3DS1
Cited by: 64
Author(s): Geraldine M. O’Connor, J.P. Vivian, Emma Gostick, Phillip Pymm, Bernard A. P. Lafont, David A. Price, Jamie Rossjohn, Andrëw G. Brööks, Daniel W. McVicar
Software Mentions: 1
Published: over 11 years ago

10.1021/acschembio.1c00411

OFF-State-Specific Inhibition of the Proprotein Convertase Furin
Cited by: 8
Author(s): S.O. Dahms, Tanja Haider, G. Klebe, Torsten Steinmetzer, Hans Brandstetter
Software Mentions: 1
Published: about 5 years ago

10.1155/2017/8940321

A Clinically Relevant Variant of the Human Hydrogen Sulfide-Synthesizing Enzyme Cystathionineβ-Synthase: Increased CO Reactivity as a Novel Molecular Mechanism of Pathogenicity?
Cited by: 15
Author(s): João B. Vicente, Henrique G. Colaço, Francesca Malagrinò, Paulo E. Santo, André Gutierres, Tiago M. Bandeiras, Paula Leandro, José A. Brito, Alessandro Giuffrè
Software Mentions: 1
Published: almost 10 years ago

10.1107/S0108767311007008

Exact direct-space asymmetric units for the 230 crystallographic space groups
Cited by: 10
Author(s): Ralf W. Grosse‐Kunstleve, B. C. Wong, Marat Mustyakimov, Paul D. Adams
Software Mentions: 1
Published: over 15 years ago

10.1107/S2052520619002002

Accurate geometrical restraints for Watson–Crick base pairs
Cited by: 13
Author(s): Mirosław Gilski, Jianbo Zhao, Marcin Kowiel, Dariusz Brzeziński, Douglas H. Turner, Mariusz Jaskólski
Software Mentions: 1
Published: over 7 years ago

10.1107/S0907444912042369

High-resolution structures of AidH complexes provide insights into a novel catalytic mechanism forN-acyl homoserine lactonase
Cited by: 24
Author(s): Ang Gao, Gui Mei, Shun Liu, Ping Wang, Qun Tang, Yan Ping Liu, Hui Wen, Xiaohong An, Liqun Zhang, Xiao Xue Yan, Dong Liang
Software Mentions: 1
Published: almost 14 years ago

10.1107/S1399004714005422

Structural characterization of the apo form and NADH binary complex of human lactate dehydrogenase
Cited by: 22
Author(s): Sally Dempster, Stephen Harper, John E. Moses, Ingrid Dreveny
Software Mentions: 1
Published: over 12 years ago

10.1107/S1399004713027806

The structures of the kinase domain and UBA domain of MPK38 suggest the activation mechanism for kinase activity
Cited by: 9
Author(s): Yong Soon Cho, Je Hyun Yoo, Sumin Park, Hyun Soo Cho
Software Mentions: 1
Published: over 12 years ago

10.1107/S0907444909011548

Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules
Cited by: 121
Author(s): Paul D. Adams, Marat Mustyakimov, Pavel V. Afonine, Paul Langan
Software Mentions: 1
Published: over 17 years ago

10.1107/S1399004714011183

BuD, a helix–loop–helix DNA-binding domain for genome modification
Cited by: 23
Author(s): Stefano Stella, Rafael Molina, Blanca López-Méndez, Alexandre Juillerat, Claudia Bertonati, Fayza Daboussi, Ramón Campos-Olivas, Phillippe Duchateau, Guillermo Montoya
Software Mentions: 1
Published: over 12 years ago

10.1107/S1399004715008548

Structure of protease-cleavedEscherichia coliα-2-macroglobulin reveals a putative mechanism of conformational activation for protease entrapment
Cited by: 11
Author(s): Cameron David Fyfe, Rhys Grinter, Inokentijs Josts, Khédidja Mosbahi, A.W. Roszak, Richard J. Cogdell, Daniel M. Wall, Richard Burchmore, Olwyn Byron, Daniel Walker
Software Mentions: 1
Published: over 11 years ago

10.1107/S0907444908044296

Crystallographic model quality at a glance
Cited by: 92
Author(s): Ludmila Urzhumtseva, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 1
Published: over 17 years ago

10.1107/S0907444911050682

Structural features and kinetic characterization of alanine racemase fromStaphylococcus aureus(Mu50)
Cited by: 20
Author(s): Emma Rose Scaletti, Sylvia R. Luckner, Kurt L. Krause
Software Mentions: 1
Published: almost 15 years ago

10.1107/S139900471401606X

Structural basis for the substrate selectivity of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonuclease
Cited by: 10
Author(s): Chen Shao, Chengliang Wang, Jianye Zang
Software Mentions: 1
Published: about 12 years ago

10.1107/S0907444913011426

Molecular replacement then and now
Cited by: 54
Author(s): Giovanna Scapin
Software Mentions: 1
Published: about 13 years ago

10.1107/S0907444908040006

Model-building strategies for low-resolution X-ray crystallographic data
Cited by: 21
Author(s): Anjum M. Karmali, Tom L. Blundell, Nicholas Furnham
Software Mentions: 1
Published: almost 18 years ago

10.1107/S1399004713030319

Likelihood-based molecular-replacement solution for a highly pathological crystal with tetartohedral twinning and sevenfold translational noncrystallographic symmetry
Cited by: 25
Author(s): Joanna Śliwiak, Mariusz Jaskólski, Zbigniew Dauter, Airlie J. McCoy, Randy J. Read
Software Mentions: 1
Published: over 12 years ago

10.1107/S0907444912049608

GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria
Cited by: 18
Author(s): K. Michalska, Kemin Tan, Hui Li, C. Hatzos-Skintges, J. Bearden, G. Babnigg, A. Joachimiak
Software Mentions: 1
Published: over 13 years ago

10.1107/S1399004715006616

3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7T: crystal structure and function of a desulfinase with an acyl-CoA dehydrogenase fold
Cited by: 4
Author(s): Marc Schürmann, Rob Meijers, Thomas R. Schneider, Alexander Steinbüchel, Michele Cianci
Software Mentions: 1
Published: over 11 years ago

10.1107/S1399004714013856

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures
Cited by: 51
Author(s): Ryan McGreevy, Abhishek Singharoy, Qufei Li, Jingfen Zhang, Dong Xu, Eduardo Perozo, Klaus Schulten
Software Mentions: 1
Published: about 12 years ago

10.1107/S0907444910031045

A smooth and differentiable bulk-solvent model for macromolecular diffraction
Cited by: 15
Author(s): Timothy D. Fenn, Michael J. Schnieders, Axel T. Brunger
Software Mentions: 1
Published: about 16 years ago

10.1107/S1399004714012917

Mapping the conformational space accessible to catechol-O-methyltransferase
Cited by: 30
Author(s): A. Ehler, Jörg Benz, Daniel Schlatter, M.G. Rudolph
Software Mentions: 1
Published: about 12 years ago

10.1107/S1399004714021099

Enzyme–adenylate structure of a bacterial ATP-dependent DNA ligase with a minimized DNA-binding surface
Cited by: 14
Author(s): Adele Kim Williamson, U. Rothweiler, Hanna‐Kirsti S. Leiros
Software Mentions: 1
Published: almost 12 years ago

10.1107/S1399004713034718

The structures of cytosolic and plastid-located glutamine synthetases fromMedicago truncatulareveal a common and dynamic architecture
Cited by: 21
Author(s): Eva Torreira, Ana R. Seabra, Helen M. Marriott, Min Zhou, Óscar Llorca, Carol V. Robinson, Helena Carvalho, Carlos Fernández‐Tornero, Pedro José Barbosa Pereira
Software Mentions: 1
Published: over 12 years ago

10.1107/S1399004713032112

Crystal structure and conformational flexibility of the unligated FK506-binding protein FKBP12.6
Cited by: 4
Author(s): Hui Chen, Sourajit M. Mustafi, David M. LeMaster, Zhong Li, A. Héroux, Hongmin Li, Griselda Hernández
Software Mentions: 1
Published: over 12 years ago

10.1107/S090744491300958X

Microcrystal manipulation with laser tweezers
Cited by: 16
Author(s): Armin Wagner, Ramona Duman, Bob Stevens, Andrew D. Ward
Software Mentions: 1
Published: over 13 years ago

10.1107/S1399004714025280

A national facility for biological cryo-electron microscopy
Cited by: 21
Author(s): Helen R. Saibil, Kay Grünewald, David I. Stuart
Software Mentions: 1
Published: almost 12 years ago

10.1107/S0907444913008408

MAINsoftware for density averaging, model building, structure refinement and validation
Cited by: 82
Author(s): Dušan Turk
Software Mentions: 1
Published: over 13 years ago

10.1107/S0907444909039638

On the use of logarithmic scales for analysis of diffraction data
Cited by: 17
Author(s): Alexandre Urzhumtsev, Pavel V. Afonine, Paul D. Adams
Software Mentions: 1
Published: almost 17 years ago

10.1107/S0907444907046148

On macromolecular refinement at subatomic resolution with interatomic scatterers
Cited by: 56
Author(s): Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Paul D. Adams, Vladimir Y. Lunin, Alexandre Urzhumtsev
Software Mentions: 1
Published: about 19 years ago

10.1107/S0907444913003260

Camel and bovine chymosin: the relationship between their structures and cheese-making properties
Cited by: 55
Author(s): Jesper Langholm Jensen, Anne Mølgaard, J.C. Navarro Poulsen, Marianne Harboe, Jens B. Simonsen, Andrea Lorentzen, Karin Hjernø, J.M. van den Brink, K.B. Qvist, Sine Larsen
Software Mentions: 1
Published: over 13 years ago

10.1107/S139900471400947X

Structural basis of the heterodimerization of the MST and RASSF SARAH domains in the Hippo signalling pathway
Cited by: 42
Author(s): Eunha Hwang, Hae‐Kap Cheong, Ameeq Ul Mushtaq, Hye Yeon Kim, Kwon Joo Yeo, Eun‐Hee Kim, Woo Cheol Lee, Kwang Yeon Hwang, Chaejoon Cheong, Young Ho Jeon
Software Mentions: 1
Published: over 12 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287