cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.ppat.1006182

Boosting of HIV envelope CD4 binding site antibodies with long variable heavy third complementarity determining region in the randomized double blind RV305 HIV-1 vaccine trial
Cited by: 38
Author(s): David Easterhoff, M. Anthony Moody, Daniela Fera, Hao Cheng, Margaret E. Ackerman, Kevin Wiehe, Kevin O. Saunders, Justin Pollara, Nathan Vandergrift, Rob Parks, Jerome Kim, Nelson L. Michael, Robert J. O’Connell, Jean–Louis Excler, Merlin L. Robb, Sandhya Vasan, Supachai Rerks-Ngarm, Jaranit Kaewkungwal, Punnee Pitisuttithum, Sorachai Nitayaphan, Faruk Sinangil, James Tartaglia, Sanjay Phogat, Thomas B. Kepler, S. Munir Alam, Hua‐Xin Liao, Guido Ferrari, Michael S. Seaman, David C. Montefiori, Georgia D. Tomaras, Stephen C. Harrison, Barton F. Haynes
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.20621

Malaria parasite CelTOS targets the inner leaflet of cell membranes for pore-dependent disruption
Cited by: 46
Author(s): John R. Jimah, Nichole D. Salinas, Monica Sala-Rabanal, Nathaniel G. Jones, L. David Sibley, Colin G. Nichols, Paul H. Schlesinger, Niraj H. Tolia
Software Mentions: 1
Published: almost 8 years ago

10.34133/2019/5641746

Mechanism of DNA Lesion Homing and Recognition by the Uvr Nucleotide Excision Repair System
Cited by: 9
Author(s): Seung-Joo Lee, Rou-Jia Sung, Gregory L. Verdine
Software Mentions: 1
Published: almost 6 years ago

10.34133/2019/2602414

Crystal Structure of 4-Hydroxyphenylpyruvate Dioxygenase in Complex with Substrate Reveals a New Starting Point for Herbicide Discovery
Cited by: 55
Author(s): Hong‐Yan Lin, Xi Chen, Jianan Chen, Dawei Wang, Feng-Xu Wu, Song-Yun Lin, Zhan Chen, Jiawei Wu, Wen‐Chao Yang, Guang‐Fu Yang
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.08505

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex
Cited by: 55
Author(s): Byungchan Bae, James Chen, Elizabeth A. Davis, Katherine Leon, Seth A. Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: about 9 years ago

10.1186/s12977-019-0489-7

Characterization of resistance to a potent d-peptide HIV entry inhibitor
Cited by: 5
Author(s): Amanda R. Smith, Matthew T. Weinstock, Amanda E. Siglin, Frank G. Whitby, James N. Francis, Christopher P. Hill, Debra M. Eckert, Michael J. Root, Michael S. Kay
Software Mentions: 1
Published: about 5 years ago

10.1177/2472555220960428

Discovery of Drug-Like Ligands for the Mac1 Domain of SARS-CoV-2 Nsp3
Cited by: 30
Author(s): Rajdeep S Virdi, Robert Bavisotto, Nicholas C Hopper, Nemanja Vuksanovic, Trevor R Melkonian, N.R. Silvaggi, David N. Frick
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.xpro.2021.100642

Protocol for improving diffraction quality of leucyl-tRNA synthetase 1 with methylation and post-crystallization soaking and cooling in cryoprotectants
Cited by: 0
Author(s): Sulhee Kim, Ina Yoon, Sung Hoon Kim, Kwang Yeon Hwang
Software Mentions: 1
Published: about 3 years ago

10.1016/j.xpro.2021.100686

Protocol for the use of focused ion-beam milling to prepare crystalline lamellae for microcrystal electron diffraction (MicroED)
Cited by: 7
Author(s): Michael W. Martynowycz, Tamir Gonen
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.01340

Structure and function of the Smoothened extracellular domain in vertebrate Hedgehog signaling
Cited by: 144
Author(s): Sigrid Nachtergaele, Daniel M. Whalen, Laurel K. Mydock, Zhonghua Zhao, Tomas Malinauskas, Kathiresan Krishnan, Philip W. Ingham, Douglas F. Covey, Christian Siebold, Rajat Rohatgi
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1008314

Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage
Cited by: 49
Author(s): James L. Kizziah, Keith A. Manning, Altaira D. Dearborn, Terje Dokland
Software Mentions: 1
Published: almost 5 years ago

10.1126/sciadv.aax8855

Cryo–electron microscopy structure and analysis of the P-Rex1–Gβγ signaling scaffold
Cited by: 28
Author(s): Jennifer N. Cash, Sarah Urata, Sheng Li, Sandeep K. Ravala, Larisa Avramova, Michael D. Shost, J. Silvio Gutkind, John J.G. Tesmer, Michael A. Cianfrocco
Software Mentions: 1
Published: about 5 years ago

10.1126/sciadv.aax1836

Allosteric modulation of nucleoporin assemblies by intrinsically disordered regions
Cited by: 12
Author(s): Bartlomiej J. Blus, Junseock Koh, Aleksandra Królak, Hyuk‐Soo Seo, Elias Coutavas, Günter Blobel
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.43676

Structural insights into SETD3-mediated histidine methylation on β-actin
Cited by: 37
Author(s): Qiong Guo, Shanhui Liao, Sebastian Kwiatkowski, Weronika Tomaka, Huijuan Yu, Gao Wu, Xiaoming Tu, Jinrong Min, Jakub Drożak, Chao Xu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1006074

Structure and Recognition of a Novel HIV-1 gp120-gp41 Interface Antibody that Caused MPER Exposure through Viral Escape
Cited by: 32
Author(s): Constantinos Kurt Wibmer, Jason Gorman, Gabriel Ozorowski, Jinal N. Bhiman, Daniel J. Sheward, Debra Elliott, Julie A. Rouelle, Ashley Smira, Michael Joyce, Nonkululeko Ndabambi, Aliaksandr Druz, Mangaiarkarasi Asokan, Dennis R. Burton, Mark Connors, Salim Safurdeen. Abdool Karim, John R. Mascola, James E. Robinson, Andrew B. Ward, Carolyn Williamson, Peter D. Kwong, Lynn Morris, Penny L. Moore
Software Mentions: 1
Published: almost 8 years ago

10.1126/sciadv.abe2631

Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels
Cited by: 37
Author(s): David J. K. Swainsbury, Pu Qian, Philip J. Jackson, Kaitlyn M. Faries, Dariusz M. Niedzwiedzki, Elizabeth C. Martin, David A. Farmer, Lorna A. Malone, Rebecca Thompson, Neil A. Ranson, Daniel P. Canniffe, Mark J. Dickman, Dewey Holten, Christine Kirmaier, Andrew Hitchcock, C. Neil Hunter
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.ppat.1008165

Cooperation between somatic mutation and germline-encoded residues enables antibody recognition of HIV-1 envelope glycans
Cited by: 5
Author(s): Nelson R. Wu, Nathan I. Nicely, Esther M. Lee, Rachel K. Reed, Brian Watts, Fangping Cai, William E. Walkowicz, Baptiste Aussedat, Julia A. Jones, Amanda Eaton, Ashley M. Trama, S. Munir Alam, David C. Montefiori, Barton F. Haynes, Kevin O. Saunders
Software Mentions: 1
Published: almost 5 years ago

10.1126/sciadv.abg9676

Genetic prion disease–related mutation E196K displays a novel amyloid fibril structure revealed by cryo-EM
Cited by: 24
Author(s): Liqiang Wang, Kun Zhao, Han-Ye Yuan, Xiangning Li, Hai-Bin Dang, Yeyang Ma, Qiang Wang, Chen Wang, Yunpeng Sun, Jie Chen, Dan Li, Delin Zhang, Ping Yin, Cong Liu, Yi Liang
Software Mentions: 1
Published: about 3 years ago

10.1038/s41597-019-0010-0

MHz data collection of a microcrystalline mixture of different jack bean proteins
Cited by: 4
Author(s): Marie Luise Grünbein, Johan Bielecki, A. Gorel, M. Stricker, Richard Bean, Marco Cammarata, Katerina Dörner, Lars Fröhlich, Elisabeth Hartmann, Steffen Hauf, M. Hilpert, Yoonhee Kim, Marco Kloos, Romain Letrun, Marc Messerschmidt, Grant Mills, Gabriela Nass Kovács, Marco Ramilli, C.M. Roome, Tokushi Sato, Matthias Scholz, Michel Sliwa, J. Sztuk-Dambietz, Martin H. Weik, Britta Weinhausen, Nasser Al-Qudami, Djelloul Boukhelef, Sándor Brockhauser, Wajid Ehsan, Moritz Emons, Sergey Esenov, Hans Fangohr, A. Kaukher, Thomas Kluyver, Max Lederer, Luis Maia, Maurizio Manetti, Thomas Michelat, A. Münnich, Florent Pallas, Guido Palmer, Gianpietro Previtali, Natascha Raab, A. Silenzi, J. Szuba, Sandhya Venkatesan, K. Wrona, Jun Zhu, R. Bruce Doak, Robert L. Shoeman, L. Foucar, J.P. Colletier, Adrian P. Mancuso, T.R.M. Barends, Claudiu A. Stan, Ilme Schlichting
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.28723

A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription
Cited by: 56
Author(s): Matthew A. Sdano, James Fulcher, Sowmiya Palani, Mahesh B. Chandrasekharan, Timothy J. Parnell, Frank G. Whitby, Tim Formosa, Christopher P. Hill
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.69800

Cryo-EM structures of the caspase-activated protein XKR9 involved in apoptotic lipid scrambling
Cited by: 21
Author(s): Monique S Straub, Carolina Alvadia, Marta Sawicka, Raimund Dutzler
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.37291

Kinetic mechanism of coupled binding in sodium-aspartate symporter GltPh
Cited by: 33
Author(s): SeCheol Oh, Olga Boudker
Software Mentions: 1
Published: about 6 years ago

10.1038/srep09878

Auto-inhibitory Mechanism of the Human Mitochondrial RNase P Protein Complex
Cited by: 26
Author(s): Fengzhi Li, Xiaofen Liu, Weihong Zhou, Xue Yang, Yuequan Shen
Software Mentions: 1
Published: over 9 years ago

10.1038/srep09762

Protein stabilization utilizing a redefined codon
Cited by: 33
Author(s): Kazumasa Ohtake, Atsushi Yamaguchi, Takahito Mukai, Hiroki Kashimura, Nobutaka Hirano, Mitsuru Haruki, Sosuke Kohashi, Kazumasa Yamagishi, Kazutaka Murayama, Yuri Tomabechi, Takashi Itagaki, Ryogo Akasaka, Masahito Kawazoe, Chie Takemoto, Mikako Shirouzu, Shigeyuki Yokoyama, Kensaku Sakamoto
Software Mentions: 1
Published: over 9 years ago

10.1038/srep10451

A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
Cited by: 106
Author(s): Philip Roedig, Ismo Vartiainen, Ramona Duman, S. Panneerselvam, Nicolas Stübe, O. Lorbeer, Martin Warmer, Geoff Sutton, David I. Stuart, E. Weckert, Christian Dávid, Armin Wagner, A. Meents
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.21347

Structural basis for inhibition of erythrocyte invasion by antibodies to Plasmodium falciparum protein CyRPA
Cited by: 43
Author(s): Lin Chen, Yibin Xu, Wilson Wong, J. K. Thompson, Julie Healer, Ethan D. Goddard‐Borger, Michael C. Lawrence, Alan F. Cowman
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.21516

Structural basis for the disaggregase activity and regulation of Hsp104
Cited by: 49
Author(s): Alexander Heuck, Sonja Schitter-Sollner, Marcin Suskiewicz, R Kurzbauer, Juliane Kley, Alexander Schleiffer, Pascaline Rombaut, Franz Herzog, Tim Clausen
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.41215

CryoEM structures of open dimers of gyrase A in complex with DNA illuminate mechanism of strand passage
Cited by: 23
Author(s): Katarzyna M Soczek, Tim Grant, Peter B. Rosenthal, Alfonso Mondragón
Software Mentions: 1
Published: about 6 years ago

10.1038/srep12830

Crystal structures of Mycobacterium tuberculosis GlgE and complexes with non-covalent inhibitors
Cited by: 12
Author(s): Jared Lindenberger, Sri Kumar Veleti, Brittney N. Wilson, Steven J. Sucheck, Donald R. Ronning
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2011.11.001

Structure of Ddn, the Deazaflavin-Dependent Nitroreductase from Mycobacterium tuberculosis Involved in Bioreductive Activation of PA-824
Cited by: 77
Author(s): Susan E. Cellitti, Jennifer Shaffer, David H. Jones, Tathagata Mukherjee, Meera Gurumurthy, Badry Bursulaya, Helena I. Boshoff, Inhee Choi, Amit Nayyar, Yong Sok Lee, Joseph Cherian, Pornwaratt Niyomrattanakit, Thomas Dick, Ujjini H. Manjunatha, Clifton E. Barry, Glen Spraggon, Bernhard H. Geierstanger
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.str.2015.01.014

Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases
Cited by: 29
Author(s): Shoichiro Horita, John S. Scotti, Cyrille C. Thinnes, Yousef S. Mottaghi-Taromsari, Armin Thalhammer, Wei Ge, W.S. Aik, Christoph Loenarz, Christopher J. Schofield, M.A. McDonough
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2015.05.002

Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2
Cited by: 20
Author(s): Lyudmila Dimitrova, Eugene Valkov, Shintaro Aibara, Dirk Flemming, Stephen H. McLaughlin, Ed Hurt, Murray Stewart
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.58114

Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes
Cited by: 25
Author(s): Shuxin Liu, Jiwei Luo, Xiangkai Zhen, Jiazhang Qiu, Songying Ouyang, Zhao‐Qing Luo
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.46344

HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors
Cited by: 38
Author(s): Pratibha C. Koneru, Ashwanth C. Francis, Nanjie Deng, Stephanie V Rebensburg, Ashley C Hoyte, Jared Lindenberger, Daniel Adu‐Ampratwum, Ross C. Larue, Michael F. Wempe, Alan Engelman, Dmitry Lyumkis, James R. Fuchs, Ronald M. Levy, Gregory B. Melikyan, Mamuka Kvaratskhelia
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.48792

Molecular mechanism of TRPV2 channel modulation by cannabidiol
Cited by: 96
Author(s): Ruth A. Pumroy, Amrita Samanta, Yuhang Liu, Taylor Hughes, Siyuan Zhao, Yevgen Yudin, Tibor Rohács, Seungil Han, Vera Y. Moiseenkova-Bell
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2015.12.015

Family-wide Structural Analysis of Human Numb-Associated Protein Kinases
Cited by: 113
Author(s): F.J. Sorrell, M. Szklarz, K.R. Abdul Azeez, J.M. Elkins, Stefan Knapp
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1007829

Structure of a functional cap-binding domain in Rift Valley fever virus L protein
Cited by: 37
Author(s): Nadja Gogrefe, Sophia Reindl, Stephan Günther, Maria Rosenthal
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1007659

Structural determination of the complement inhibitory domain of Borrelia burgdorferi BBK32 provides insight into classical pathway complement evasion by Lyme disease spirochetes
Cited by: 32
Author(s): Jialei Xie, Hui Zhi, Ryan J. Garrigues, Andrew Keightley, Brandon L. Garcia, Jon T. Skare
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1005035

Characterization of a Prefusion-Specific Antibody That Recognizes a Quaternary, Cleavage-Dependent Epitope on the RSV Fusion Glycoprotein
Cited by: 101
Author(s): M.S.A. Gilman, Syed M. Moin, Vicente Más, Man Chen, Nita Patel, Kramer Kari, Qing Zhu, Stephanie C. Kabeche, Abhinav Kumar, Concepción Palomo, Tim Beaumont, Ulrich Baxa, Nancy D. Ulbrandt, José A. Melero, Barney S. Graham, Jason S. McLellan
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2018.03.014

Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1
Cited by: 30
Author(s): Deg Briggs, Erhard Hohenester
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2018.07.011

Insights into Kinesin-1 Activation from the Crystal Structure of KLC2 Bound to JIP3
Cited by: 43
Author(s): J.J.B. Cockburn, Sophie J. Hesketh, Peter O. Mulhair, Maren Thomsen, Mary J. O’Connell, Michael Way
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.13662

Structural mechanism of ligand activation in human calcium-sensing receptor
Cited by: 179
Author(s): Yong Geng, Lidia Mosyak, Igor Kurinov, Hao Zuo, Emmanuel Sturchler, Tianfan Cheng, Prakash Subramanyam, Alice P Brown, Sarah C. Brennan, Hee-Chang Mun, Martin Bush, Yan Chen, Trang X Nguyen, Bin Cao, Donald D. Chang, Matthias Quick, Arthur D. Conigrave, Henry M. Colecraft, Patricia McDonald, Qing Fan
Software Mentions: 1
Published: over 8 years ago

10.1016/j.str.2019.06.008

Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation
Cited by: 4
Author(s): Mads Gabrielsen, Lori Buetow, Dominika Kowalczyk, Wei Zhang, Sachdev S. Sidhu, Danny T. Huang
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2019.06.005

Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Cited by: 18
Author(s): Zhuoyao Chen, S. Picaud, P. Filippakopoulos, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2019.09.010

Combining Transient Expression and Cryo-EM to Obtain High-Resolution Structures of Luteovirid Particles
Cited by: 22
Author(s): Matthew J. Byrne, John F. C. Steele, Emma L. Hesketh, Miriam Walden, Rebecca Thompson, George P. Lomonossoff, Neil A. Ranson
Software Mentions: 1
Published: almost 5 years ago

10.1128/JVI.03586-14

Peptide-Dependent Recognition of HLA-B*57:01 by KIR3DS1
Cited by: 64
Author(s): Geraldine M. O’Connor, J.P. Vivian, Emma Gostick, Phillip Pymm, Bernard A. P. Lafont, David A. Price, Jamie Rossjohn, Andrëw G. Brööks, Daniel W. McVicar
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.08504

Structure of a bacterial RNA polymerase holoenzyme open promoter complex
Cited by: 185
Author(s): Byungchan Bae, Andrey Feklístov, Agnieszka Lass-Napiorkowska, Robert Landick, Seth A. Darst
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.28619

Structural basis of host recognition and biofilm formation by Salmonella Saf pili
Cited by: 20
Author(s): Longhui Zeng, Li Zhang, Pengran Wang, Guoyu Meng
Software Mentions: 1
Published: about 7 years ago

10.1016/j.str.2020.01.003

MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling
Cited by: 39
Author(s): Martin C. Moncrieffe, Daniel Bollschweiler, Bing Li, Pawel A. Penczek, Lee Hopkins, Clare E. Bryant, David Klenerman
Software Mentions: 1
Published: over 4 years ago

10.1016/j.str.2020.01.005

Structural Basis for Rab8a Recruitment of RILPL2 via LRRK2 Phosphorylation of Switch 2
Cited by: 51
Author(s): Dieter Waschbüsch, Elena Purlyte, Prosenjit Pal, Emma McGrath, Dario R. Alessi, Amir R. Khan
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.39979

BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands
Cited by: 32
Author(s): Matthew Day, Mathieu Rappas, Katie Ptasińska, Dominik Boos, Antony W. Oliver, Laurence H. Pearl
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1007562

Structural roles of PCV2 capsid protein N-terminus in PCV2 particle assembly and identification of PCV2 type-specific neutralizing epitope
Cited by: 35
Author(s): Xiaobing Mo, Xiangdong Li, Biaolin Yin, Junhua Deng, Kegong Tian, Adam Yuan
Software Mentions: 1
Published: over 5 years ago

10.1155/2017/8940321

A Clinically Relevant Variant of the Human Hydrogen Sulfide-Synthesizing Enzyme Cystathionineβ-Synthase: Increased CO Reactivity as a Novel Molecular Mechanism of Pathogenicity?
Cited by: 15
Author(s): João B. Vicente, Henrique G. Colaço, Francesca Malagrinò, Paulo E. Santo, André Gutierres, Tiago M. Bandeiras, Paula Leandro, José A. Brito, Alessandro Giuffrè
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1007343

Structure-guided disruption of the pseudopilus tip complex inhibits the Type II secretion in Pseudomonas aeruginosa
Cited by: 15
Author(s): Yichen Zhang, Frédérick Faucher, Wenwen Zhang, Shu Wang, Nolan Neville, Keith Poole, Jun Zheng, Zongchao Jia
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.23961

Nuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals
Cited by: 61
Author(s): Ho Yee Joyce Fung, Szu Chin Fu, Yuh Min Chook
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.59407

Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter
Cited by: 26
Author(s): Julia Steiner, L.A. Sazanov
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.ppat.1007304

Crystal structure of a soluble fragment of poliovirus 2CATPase
Cited by: 24
Author(s): Hongxin Guan, Juan Tian, Chu Zhang, Bo Qin, Sheng Cui
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins12060380

mRNA Interferase Bacillus cereus BC0266 Shows MazF-Like Characteristics Through Structural and Functional Study
Cited by: 4
Author(s): Sung-Min Kang, Ji Sung Koo, In Soo Kim, Do-Hee Kim, Bong-Jin Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12070438

Structural and Functional Insights into the C-terminal Fragment of Insecticidal Vip3A Toxin of Bacillus thuringiensis
Cited by: 17
Author(s): Kun Jiang, Yan Zhang, Zhe Chen, Dalei Wu, Jin Cai, Xiang Gao
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.36615

Electron cryo-microscopy structure of the canonical TRPC4 ion channel
Cited by: 83
Author(s): Deivanayagabarathy Vinayagam, Thomas Mager, Amir Apelbaum, Arne Bothe, Felipe Merino, Oliver Hofnagel, Christos Gatsogiannis, Stefan Raunser
Software Mentions: 1
Published: over 6 years ago

10.1038/s41398-018-0258-8

Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression
Cited by: 11
Author(s): Hang Zhou, Zhongshan Cheng, Nick Bass, John H. Krystal, Lindsay A. Farrer, Henry R. Kranzler, Joel Gelernter
Software Mentions: 1
Published: about 6 years ago

10.1101/2020.06.08.141267

Structural basis of a public antibody response to SARS-CoV-2
Cited by: 18
Author(s): Meng Yuan, Hejun Liu, Nicholas C. Wu, Chang-Chun David Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry J Tien, Thomas F. Rogers, Elise Landais, Devin Sok, Joseph G. Jardine, Dennis R. Burton, Ian A. Wilson
Software Mentions: 1
Published: over 4 years ago

10.1101/2020.08.02.233536

Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Cited by: 13
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 4 years ago

10.1101/2021.01.26.428356

Sequence signatures of two IGHV3-53/3-66 public clonotypes to SARS-CoV-2 receptor binding domain
Cited by: 3
Author(s): Timothy J.C. Tan, Meng Yuan, Kaylee Kuzelka, Gilberto C Padron, Jacob R. Beal, Xin Chen, Yiquan Wang, Joel Rivera-Cardona, Xueyong Zhu, Beth M. Stadtmueller, Christopher B. Brooke, Ian A. Wilson, Nicholas C. Wu
Software Mentions: 1
Published: almost 4 years ago

10.1101/2020.09.18.302901

SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism
Cited by: 34
Author(s): Ming Shi, Long Wang, Pietro Fontana, Setu M. Vora, Ying Zhang, Tian‐Min Fu, Judy Lieberman, Hao Wu
Software Mentions: 1
Published: about 4 years ago

10.1101/2020.09.21.305441

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody
Cited by: 4
Author(s): Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Deli Huang, Xueyong Zhu, Chang-Chun David Lee, Hannah L. Turner, Linghang Peng, Linlin Yang, David Nemazee, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 4 years ago

10.1101/2021.04.01.437942

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants
Cited by: 6
Author(s): Hyeseon Cho, Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang, Nathan Beutler, Jonathan L. Torres, Cong Yu, Elena Postnikova, Sandhya Bangaru, Chloe Adrienna Talana, Wei Shi, Eun Sung Yang, Yi Zhang, Kwanyee Leung, Lingshu Wang, Linghang Peng, Jeff Skinner, Shanping Li, Nicholas C. Wu, Hejun Liu, Cherrelle Dacon, Thomas P. Moyer, Melanie Cohen, Ming Zhao, F. Eun-Hyung Lee, Rona Singer Weinberg, Iyadh Douagi, Robin Gross, Connie S. Schmaljohn, Amarendra Pegu, John R. Mascola, Michael R. Holbrook, David Nemazee, Thomas F. Rogers, Andrew B. Ward, Ian A. Wilson, Peter D. Crompton, Joshua Tan
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.00492-16

Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function
Cited by: 30
Author(s): Nam K. Tonthat, Praveen R. Juvvadi, Hengshan Zhang, Soo Chan Lee, Ronald A. Venters, Leonard D. Spicer, William J. Steinbach, Joseph Heitman, Maria A. Schumacher
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00872-16

Molecular Insights into the Fungus-Specific Serine/Threonine Protein Phosphatase Z1 in Candida albicans
Cited by: 21
Author(s): Emily Chen, M.S. Choy, Katalin Petrényi, Zoltán Kónya, Ferenc Erdődi, Viktor Dombrádi, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.01543-16

Emergence of a Potent Multidrug Efflux Pump Variant That Enhances Campylobacter Resistance to Multiple Antibiotics
Cited by: 81
Author(s): Hong Yao, Zhangqi Shen, Yang Wang, Fengru Deng, Dejun Liu, Gaowa Naren, Lei Dai, Chih‐Chia Su, Bing Wang, Shaolin Wang, Congming Wu, Edward Yu, Qijing Zhang, Jianzhong Shen
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1007224

Molecular basis for CesT recognition of type III secretion effectors in enteropathogenic Escherichia coli
Cited by: 13
Author(s): Dustin J. Little, Brian K. Coombes
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.00225-17

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance
Cited by: 28
Author(s): Omar M. El-Halfawy, Javier Klett, Rebecca J. Ingram, Slade A. Loutet, M.E.P. Murphy, Sonsoles Martín‐Santamaría, Miguel A. Valvano
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.49110

Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a
Cited by: 40
Author(s): Gavin J. Knott, Brady F. Cress, Jun Jie Liu, Brittney W. Thornton, Rachel J. Lew, Basem Al-Shayeb, Daniel Rosenberg, Michal Hammel, Benjamin A. Adler, Marco Lobba, Michael Xu, Adam P. Arkin, Christof Fellmann, Jennifer A. Doudna
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.39340

Structure of the human epithelial sodium channel by cryo-electron microscopy
Cited by: 128
Author(s): Sigrid Noreng, Arpita Bharadwaj, Richard Posert, Craig Yoshioka, Isabelle Baconguis
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00674-17

Curative Treatment of Severe Gram-Negative Bacterial Infections by a New Class of Antibiotics Targeting LpxC
Cited by: 21
Author(s): Nadine Lemaître, Xiaofei Liang, Javaria Najeeb, Chul‐Jin Lee, Marie Titécat, Emmanuelle Leteurtre, Michel Simonet, Eric J. Toone, Pei Zhou, Florent Sebbane
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00787-17

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus
Cited by: 17
Author(s): Zhihai Li, Daning Wang, Ying Gu, Shuo Song, Maozhou He, Jingjie Shi, Xinlin Liu, Shuangping Wei, Jinjin Li, Hai Yu, Qingbing Zheng, Xiaodong Yan, Timothy S. Baker, Jun Zhang, Jason S. McLellan, Ningshao Xia
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.20383

Structure of the malaria vaccine candidate antigen CyRPA and its complex with a parasite invasion inhibitory antibody
Cited by: 46
Author(s): Paola Favuzza, Elena Guffart, Marco Tamborrini, Bianca Scherer, Anita M. Dreyer, Arne C. Rufer, Johannes Erny, Joerg Hoernschemeyer, Ralf Thoma, Georg Schmid, Bernard Gsell, Araceli Lamelas, J. Benz, Catherine Joseph, Hugues Matile, Gerd Pluschke, M.G. Rudolph
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1007236

Cryo-EM structure of the SARS coronavirus spike glycoprotein in complex with its host cell receptor ACE2
Cited by: 684
Author(s): Wenchao Song, Miao Gui, Xinquan Wang, Ye Xiang
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01346-18

Structural Analysis of the Interaction between the Bacterial Cell Division Proteins FtsQ and FtsB
Cited by: 38
Author(s): Danguole Kureisaite-Ciziene, Aravindan Varadajan, Stephen H. McLaughlin, Marjolein Glas, Alejandro Montón Silva, Rosa A. Luirink, Carolin Mueller, Tanneke den Blaauwen, Tom N. Grossmann, Joen Luirink, Jan Löwe
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01784-18

The Protozoan Trichomonas vaginalis Targets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases
Cited by: 19
Author(s): Jully Pinheiro, Jacob Biboy, Waldemar Vollmer, Robert P. Hirt, J.R. Keown, Anastasiia Artuyants, Moyra M. Black, David C. Goldstone, Augusto Simões-Barbosa
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1007052

RitR is an archetype for a novel family of redox sensors in the streptococci that has evolved from two-component response regulators and is required for pneumococcal colonization
Cited by: 15
Author(s): David G. Glanville, Lu Han, Andrew J. Maule, Alexandra Woodacre, Devsaagar Thanki, Iman Tajer Abdullah, Julie A. Morrissey, Tom Clarke, Hasan Yeşilkaya, N.R. Silvaggi, Andrew T. Ulijasz
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1005980

Structural Insights into Streptococcal Competence Regulation by the Cell-to-Cell Communication System ComRS
Cited by: 43
Author(s): Antoine Talagas, Laetitia Fontaine, Ledesma-Garca Laura, Johann Mignolet, I. Li de la Sierra-Gallay, Noureddine Lazar, Magali Aumont-Niçaise, Michael J. Federle, Gerd Prehna, Pascal Hols, Sylvie Nessler
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01210-19

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA
Cited by: 26
Author(s): Nazua L. Costa, B. A. Hermann, Vincent Fourmond, M. Faustino, Miguel Teixeira, Oliver Einsle, Catarina M. Paquete, Ricardo O. Louro
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01497-19

Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO 2 Capture by a Surface-Exposed [Fe 4 S 4 ] Cluster
Cited by: 10
Author(s): Lee A. Rettberg, Wonchull Kang, Martin T. Stiebritz, Caleb J. Hiller, Chi Chung Lee, Jasper Liedtke, Markus W. Ribbe, Yilin Hu
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.52343

Casein kinase 1 dynamics underlie substrate selectivity and the PER2 circadian phosphoswitch
Cited by: 47
Author(s): Jonathan M. Philpott, Rajesh Narasimamurthy, Clarisse Gravina Ricci, Alfred M. Freeberg, Sabrina R. Hunt, Lauren E. Yee, Rebecca S. Pelofsky, Sarvind Tripathi, David M. Virshup, Carrie L. Partch
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.43584

Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer’s and Pick’s diseases
Cited by: 270
Author(s): W Zhang, Benjamin Falcon, Alexey G. Murzin, Jiaqin Fan, R. Anthony Crowther, Michel Goedert, Sjors H.W. Scheres
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.00280-20

The HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site
Cited by: 34
Author(s): Jérémie Prévost, W.D. Tolbert, Halima Medjahed, Rebekah Sherburn, Navid Madani, Daria Zoubchenok, Gabrielle Gendron‐Lepage, Althea Gaffney, Melissa C. Grenier, Sharon Kirk, Natasha Gupta Vergara, Changze Han, Brendan T. Mann, Agnès Laurence Chenine, Adel Ahmed Rashad Ahmed, Irwin M. Chaiken, Frank Kirchhoff, Beatrice H. Hahn, Hillel Haim, Cameron F. Abrams, Amos B. Smith, Joseph Sodroski, Marzena Pazgier, Andrés Finzi
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.01303-20

Structure and Multitasking of the c-di-GMP-Sensing Cellulose Secretion Regulator BcsE
Cited by: 12
Author(s): Samira Zouhir, W. Abidi, M. Caleechurn, Petya V. Krasteva
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.01488-20

Structural Characterization of the Essential Cell Division Protein FtsE and Its Interaction with FtsX in Streptococcus pneumoniae
Cited by: 10
Author(s): Martín Alcorlo, Daniel Straume, Joe Lutkenhaus, Leiv Sigve Håvarstein, J.A. Hermoso
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.02012-20

Molecular Deceleration Regulates Toxicant Release to Prevent Cell Damage in Pseudomonas putida S16 (DSM 28022)
Cited by: 4
Author(s): Hongzhi Tang, Kunzhi Zhang, Haiyang Hu, Geng Wu, Weiwei Wang, Xiongyu Zhu, Gongquan Liu, Ping Xu
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.12411

The Sec7 N-terminal regulatory domains facilitate membrane-proximal activation of the Arf1 GTPase
Cited by: 14
Author(s): Brian C. Richardson, Steve Halaby, Margaret A. Gustafson, J. Christopher Fromme
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.22520

Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA
Cited by: 101
Author(s): Elizabeth A. Hubin, Allison Fay, Catherine K. Xu, James Bean, Ruth M. Saecker, Michael S. Glickman, Seth A. Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.23905

Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins
Cited by: 64
Author(s): Aimin Yang, Supansa Pantoom, Yao‐Wen Wu
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.35898

Structural insights into the architecture and membrane interactions of the conserved COMMD proteins
Cited by: 28
Author(s): Michael D. Healy, Manuela K. Hospenthal, Ryan J. Hall, Mintu Chandra, Molly Chilton, Vikas A. Tillu, Kai‐En Chen, Dion J. Celligoi, Fiona J. McDonald, Peter J. Cullen, J.S. Lott, Brett M. Collins, Rajesh Ghai
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.19058

Molecular basis of sidekick-mediated cell-cell adhesion and specificity
Cited by: 32
Author(s): K.M. Goodman, Masahito Yamagata, Xiangshu Jin, Seetha Mannepalli, Phinikoula S. Katsamba, Göran Ahlsén, Alina P. Sergeeva, Barry Honig, Joshua R. Sanes, Lawrence Shapiro
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.11859

A G-protein activation cascade from Arl13B to Arl3 and implications for ciliary targeting of lipidated proteins
Cited by: 117
Author(s): Katja Gotthardt, Mandy Lokaj, Carolin Koerner, Nathalie Falk, Andreas Gießl, Alfred Wittinghofer
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.36402

Cryo-EM structure of alpha-synuclein fibrils
Cited by: 408
Author(s): Ricardo C. Guerrero-Ferreira, Nicholas M. I. Taylor, Daniel Mona, Philippe Ringler, Matthias E. Lauer, Roland Riek, Markus Britschgi, Henning Stahlberg
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.34823

Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts
Cited by: 71
Author(s): Hande Boyaci, James Chen, Mirjana Lilić, Margaret Palka, Rachel A. Mooney, Robert Landick, Seth A Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: almost 7 years ago

Projects: cran: PHENIX

Papers Mentioning PHENIX 2,287