cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0204703

Structural and biochemical characterization of the Cutibacterium acnes exo-β-1,4-mannosidase that targets the N-glycan core of host glycoproteins
Cited by: 11
Author(s): Tom Reichenbach, Dayanand Kalyani, Rosaria Gandini, Olov Svartström, Henrik Aspeborg, Christina Divne
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2091-12-59

Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins
Cited by: 8
Author(s): Bjorn Vergauwen, Ruben Van der Meeren, Ann Dansercoer, Savvas N. Savvides
Software Mentions: 2
Published: over 15 years ago

10.1186/s12859-014-0434-7

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions
Cited by: 3
Author(s): Padmaja Natarajan, Marco Punta, Abhinav Kumar, Andrew Yeh, Adam Godzik, L. Aravind
Software Mentions: 2
Published: over 11 years ago

10.1107/S0021889811041161

iotbx.cif: a comprehensive CIF toolbox
Cited by: 539
Author(s): Richard J. Gildea, Luc J. Bourhis, Oleg V. Dolomanov, Ralf W. Grosse‐Kunstleve, Horst Puschmann, Paul D. Adams, Judith A. K. Howard
Software Mentions: 2
Published: almost 15 years ago

10.1107/S1600576715010432

Programming new geometry restraints: parallelity of atomic groups
Cited by: 13
Author(s): Oleg Sobolev, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: about 11 years ago

10.1186/s12915-016-0303-0

Structure of the catalytic domain of the colistin resistance enzyme MCR-1
Cited by: 90
Author(s): V. Stojanoski, Banumathi Sankaran, B. V. Venkataram Prasad, Laurent Poirel, Patrice Nordmann, Timothy Palzkill
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12915-015-0167-8

Role of electrostatic interactions for ligand recognition and specificity of peptide transporters
Cited by: 47
Author(s): Rajendra Boggavarapu, Jean-Marc Jeckelmann, Daniel Harder, Zöhre Ucurum, Dimitrios Fotiadis
Software Mentions: 2
Published: about 11 years ago

10.1186/s12915-017-0372-8

Ion- and water-binding sites inside an occluded hourglass pore of a trimeric intracellular cation (TRIC) channel
Cited by: 4
Author(s): Xiaomin Ou, Jing Guo, Long Wang, Hongxin Yang, Xiuying Liu, Jianyuan Sun, Zhongfan Liu
Software Mentions: 2
Published: over 9 years ago

10.1107/S1399004714010311

Structures of the NLRP14 pyrin domain reveal a conformational switch mechanism regulating its molecular interactions
Cited by: 18
Author(s): Clarissa Eibl, Manuel Hessenberger, Julia Wenger, Hans Brandstetter
Software Mentions: 2
Published: about 12 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0085940

Crystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site
Cited by: 47
Author(s): Young Do Kwon, Judith M. LaLonde, Yongping Yang, Mark A. Elban, Akihiro Sugawara, Joel R. Courter, David M. Jones, Amos B. Smith, Asim K. Debnath, Peter D. Kwong
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
Cited by: 39
Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0133033

Identification of Interactions between Abscisic Acid and Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase
Cited by: 16
Author(s): Marek Gałka, Nandhakishore Rajagopalan, Leann Buhrow, Ken M. Nelson, Jacek Switala, Adrian J. Cutler, David R. J. Palmer, P.C. Loewen, Suzanne R. Abrams, Michèle C. Loewen
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: over 12 years ago

10.1186/s12915-019-0698-5

Crystal structure of diamondback moth ryanodine receptor Repeat34 domain reveals insect-specific phosphorylation sites
Cited by: 18
Author(s): Tong Xu, Zhiguang Yuchi
Software Mentions: 2
Published: almost 7 years ago

10.1186/1741-7007-9-48

Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1
Cited by: 49
Author(s): Alexei Korennykh, Pascal F. Egea, А.A. Коростелев, J. Finer-Moore, Robert M. Stroud, Chao Zhang, Kevan M. Shokat, Peter Walter
Software Mentions: 2
Published: about 15 years ago

10.1107/S090744491200251X

JLigand: a graphical tool for the CCP4 template-restraint library
Cited by: 353
Author(s): А. А. Лебедев, Paul G. Young, Michail N. Isupov, Olga V. Moroz, A.A. Vagin, Garib N. Murshudov
Software Mentions: 2
Published: over 14 years ago

10.1186/s12866-015-0365-0

Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae
Cited by: 33
Author(s): Stephan Endres, Joachim Granzin, Franco Circolone, Andreas M. Stadler, Ulrich Krauß, Thomas Drepper, Vera Svensson, Esther Knieps-Grünhagen, Astrid Wirtz, Anneliese Cousin, Petra Tielen, Dieter Willbold, Karl‐Erich Jaeger, Renu Batra‐Safferling
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M114.611780

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites
Cited by: 53
Author(s): Kye‐Won Kim, Clyde A. Smith, Michael D. Daily, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 2
Published: over 11 years ago

10.1107/S1399004715002916

The role of monovalent cations in the ATPase reaction of DNA gyrase
Cited by: 15
Author(s): S.J. Hearnshaw, T.T. Chung, C.E.M. Stevenson, Anthony Maxwell, David M. Lawson
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0184627

Structure-based design, synthesis and crystallization of 2-arylquinazolines as lipid pocket ligands of p38α MAPK
Cited by: 10
Author(s): Mike Bührmann, Bianca Wiedemann, Matthias Müller, Julia Hardick, Mary Ecke, Daniel Rauh
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0174284

Structural insights into the regulation of Bacillus subtilis SigW activity by anti-sigma RsiW
Cited by: 19
Author(s): Shankar Raj Devkota, Eunju Kwon, Soonhoi Ha, Hyeun Wook Chang, Dong Young Kim
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0140953

Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
Cited by: 4
Author(s): Wenjie Wang, Cheng Wang, Ming Luo, Qingyu Yan, Gino Yu, Qiong Li, Dong Cao, Shengfeng Huang, Anlong Xu, Roy A. Mariuzza, Yuxing Chen, Cong‐Zhao Zhou
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.669895

Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease
Cited by: 27
Author(s): Xi Chen, Kathrin Hnida, Melissa A. Graewert, Jan Terje Andersen, Rasmus Iversen, Anne Tuukkanen, Dmitri I. Svergun, Ludvig M. Sollid
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: almost 11 years ago

10.1186/1756-0500-5-626

Crystal structures of wild-type and mutated cyclophilin B that causes hyperelastosis cutis in the American quarter horse
Cited by: 8
Author(s): Sergei P. Boudko, Yoshihiro Ishikawa, Thomas F. Lerch, Jay C. Nix, Michael S. Chapman, Hans Peter Bächinger
Software Mentions: 2
Published: almost 14 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0155846

The Crystal Structure of the YknZ Extracellular Domain of ABC Transporter YknWXYZ from Bacillus amyloliquefaciens
Cited by: 9
Author(s): Yongbin Xu, Jianyun Guo, Lulu Wang, Rui Jiang, Xiaoling Jin, Jing Liu, Fan Sheng-di, Chunshan Quan, Nam‐Chul Ha
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0124272

LucY: A Versatile New Fluorescent Reporter Protein
Cited by: 4
Author(s): M.E. Auldridge, Heidi B. Cao, Satyabrata Sen, Laura Franz, C.A. Bingman, Ragothaman M. Yennamalli, George N. Phillips, David A. Mead, Eric J. Steinmetz
Software Mentions: 2
Published: over 11 years ago

10.1107/S2059798316007907

Structural basis for acyl-group discrimination by human Gcn5L2
Cited by: 44
Author(s): Alison E. Ringel, Cynthia Wolberger
Software Mentions: 2
Published: about 10 years ago

10.1107/S0907444910001502

Detection and correction of underassigned rotational symmetry prior to structure deposition
Cited by: 12
Author(s): Billy K. Poon, Ralf W. Grosse‐Kunstleve, Peter H. Zwart, Nicholas K. Sauter
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.ppat.1005248

An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum
Cited by: 31
Author(s): Adela S. Oliva Chávez, J.W. Fairman, Roderick F. Felsheim, Curtis M. Nelson, Michael J. Herron, Lee Ann Higgins, Nicole Y. Burkhardt, Jonathan D. Oliver, Todd W. Markowski, Timothy J. Kurtti, Thomas E. Edwards, Ulrike G. Munderloh
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1005351

Mycobacterial Metabolic Syndrome: LprG and Rv1410 Regulate Triacylglyceride Levels, Growth Rate and Virulence in Mycobacterium tuberculosis
Cited by: 76
Author(s): Amanda J. Martinot, Mary F. Farrow, Lu Bai, Emilie Layre, Tan-Yun Cheng, Jennifer Tsai, Jahangir Iqbal, John W. Annand, Zuri A. Sullivan, M. Mahmood Hussain, James C. Sacchettini, D. Branch Moody, Jessica C. Seeliger, Eric J. Rubín
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0188005

Crystal structures of ternary complexes of archaeal B-family DNA polymerases
Cited by: 36
Author(s): H.M. Kropp, Karin Betz, Johannes Wirth, Kay Diederichs, Andreas Marx
Software Mentions: 2
Published: over 8 years ago

10.1186/s12900-015-0030-8

Crystal structure and biophysical characterization of the nucleoside diphosphate kinase from Leishmania braziliensis
Cited by: 6
Author(s): P.S. Vieira, P.O. Giuseppe, Mário Tyago Murakami, Arthur Henrique Cavalcante de Oliveira
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0063370

Structural Basis for the Oligomerization-State Switch from a Dimer to a Trimer of an Engineered Cortexillin-1 Coiled-Coil Variant
Cited by: 2
Author(s): Saša Bjelić, Mara M. Wieser, Daniel Frey, Christian U. Stirnimann, Mark R. Chance, Rolf Jaussi, Michel O. Steinmetz, Richard A. Kammerer
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0091232

Molecular Recognition of the Neurotransmitter Acetylcholine by an Acetylcholine Binding Protein Reveals Determinants of Binding to Nicotinic Acetylcholine Receptors
Cited by: 34
Author(s): Jeppe Olsen, Thomas Balle, Michael Gajhede, Philip K. Ahring, J.S. Kastrup
Software Mentions: 2
Published: over 12 years ago

10.1186/1472-6807-12-32

Ternary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme’s active site closure
Cited by: 22
Author(s): Jaeok Park, Yih‐Shyan Lin, Joris W. De Schutter, Youla S. Tsantrizos, Albert M. Berghuis
Software Mentions: 2
Published: over 13 years ago

10.1186/1472-6807-14-3

Crystal structures of the human Dysferlin inner DysF domain
Cited by: 25
Author(s): Altin Sula, A.R. Cole, Corin Yeats, Christine A. Orengo, Nicholas H. Keep
Software Mentions: 2
Published: over 12 years ago

10.1107/S2059798318004357

On the application of the expected log-likelihood gain to decision making in molecular replacement
Cited by: 35
Author(s): Robert D. Oeffner, Pavel V. Afonine, Claudia Millán, Massimo Sammito, Isabel Usón, Randy J. Read, Airlie J. McCoy
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1006098

Receptor Activation of HIV-1 Env Leads to Asymmetric Exposure of the gp41 Trimer
Cited by: 31
Author(s): Mukta D. Khasnis, Konstantine Halkidis, Anshul Bhardwaj, Michael J. Root
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0192488

The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity
Cited by: 7
Author(s): Igor Sabljić, Marko Tomin, Mihaela Matovina, Iva Sučec, Ana Tomašić Paić, Antonija Tomić, Marija Abramić, Sanja Tomić
Software Mentions: 2
Published: over 8 years ago

10.1186/s12900-015-0037-1

Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA Glycosylase
Cited by: 8
Author(s): Norbert Schormann, Surajit Banerjee, Robert P. Ricciardi, Debasish Chattopadhyay
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.ppat.1006231

Structure of a pentameric virion-associated fiber with a potential role in Orsay virus entry to host cells
Cited by: 10
Author(s): Yingying Fan, Yusong R. Guo, Yuan Wang, Ying Zhou, Matthew V. Holt, Tao Wang, Borries Demeler, Nicolas L. Young, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1006400

Structural insights into reptarenavirus cap-snatching machinery
Cited by: 27
Author(s): Maria Rosenthal, Nadja Gogrefe, Dominik Vogel, Juan Reguera, Bianka Rauschenberger, Stephen Cusack, Stephan Günther, Sophia Reindl
Software Mentions: 2
Published: over 9 years ago

10.1186/1472-6807-12-13

Crystal structure of the Yersinia enterocolitica type III secretion chaperone SycD in complex with a peptide of the minor translocator YopD
Cited by: 25
Author(s): Madeleine Schreiner, Hartmut H. Niemann
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0062252

Crystal Structures of a Plant Trypsin Inhibitor from Enterolobium contortisiliquum (EcTI) and of Its Complex with Bovine Trypsin
Cited by: 30
Author(s): Dongwen Zhou, Yara Aparecida Lobo, Isabel de Fátima Correia Batista, Rafael Marques-Porto, Alla Gustchina, Maria Luíza Vilela Oliva, Alexander Wlodawer
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.ppat.1006714

A mobile loop near the active site acts as a switch between the dual activities of a viral protease/deubiquitinase
Cited by: 15
Author(s): Isabelle Jupin, Maya Ayach, Lucile Jomat, Sonia Fieulaine, Stéphane Bressanelli
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0040066

The Crystal Structures of Dystrophin and Utrophin Spectrin Repeats: Implications for Domain Boundaries
Cited by: 27
Author(s): M. Muthu, Kylie A. Richardson, Andrew J. Sutherland-Smith
Software Mentions: 2
Published: about 14 years ago

10.1186/1472-6807-7-45

Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Cited by: 35
Author(s): Norbert Schormann, Alexei Grigorian, Alexandra B. Samal, Krishnan Raman, Lawrence J. DeLucas, Debasish Chattopadhyay
Software Mentions: 2
Published: about 19 years ago

10.1371/journal.ppat.1006935

Structural basis for recognition of the central conserved region of RSV G by neutralizing human antibodies
Cited by: 45
Author(s): Harrison G. Jones, Tina Ritschel, Gabriel Pascual, Just P. J. Brakenhoff, Elissa Keogh, Polina Furmanova-Hollenstein, Ellen Lanckacker, Jehangir S. Wadia, M.S.A. Gilman, R. Anthony Williamson, Dirk Roymans, Angélique B. van ’t Wout, Johannes P. M. Langedijk, Jason S. McLellan
Software Mentions: 2
Published: over 8 years ago

10.1186/s12900-014-0024-y

Structural insights into Escherichia coli polymyxin B resistance protein D with X-ray crystallography and small-angle X-ray scattering
Cited by: 9
Author(s): Hang-Hyun Jo, Eui Young Jeong, Jinseong Jeon, Changill Ban
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0241912

Molecular analysis of cyclic α-maltosyl-(1→6)-maltose binding protein in the bacterial metabolic pathway
Cited by: 2
Author(s): Masanori Kohno, T. Arakawa, Naoki Sunagawa, Tetsuya Mori, Kiyohiko Igarashi, Tetsuya Nishimoto, Shinya Fushinobu
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2059798316001169

Tackling the crystallographic structure determination of the COP9 signalosome
Cited by: 3
Author(s): R.D. Bunker
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798315024110

Data-collection strategy for challenging native SAD phasing
Cited by: 40
Author(s): V. Oliéric, T. Weinert, Aaron D. Finke, Carolin Anders, Dianfan Li, Natacha Olieric, Camelia N. Borca, Michel O. Steinmetz, Martin Caffrey, Martin Jinek, Meitian Wang
Software Mentions: 2
Published: over 10 years ago

10.1186/1472-6807-14-17

Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3
Cited by: 36
Author(s): Catherine Leettola, Mary Jane Knight, Duilio Cascio, Sigrid Hoffman, James U. Bowie
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.ppat.1007476

Structural basis of Toxoplasma gondii perforin-like protein 1 membrane interaction and activity during egress
Cited by: 10
Author(s): Alfredo J. Guerra, Ou Zhang, Constance M. Bahr, My Hang Huynh, James Delproposto, William Clay Brown, Z. Wawrzak, Nicole M. Koropatkin, Vern B. Carruthers
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798319010866

Structures of the substrate-binding protein YfeA in apo and zinc-reconstituted holo forms
Cited by: 8
Author(s): C.D. Radka, Shaunivan Labiuk, Lawrence J. DeLucas, Stephen G. Aller
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2059798318006356

Crystal structure of the spliceosomal DEAH-box ATPase Prp2
Cited by: 21
Author(s): Andreas Schmitt, Florian Hamann, Piotr Neumann, Ralf Ficner
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0089027

Distinct Structural Features of the Peroxide Response Regulator from Group A Streptococcus Drive DNA Binding
Cited by: 13
Author(s): Chang Hong Lin, Shi-Yu Chao, Michal Hammel, Jay C. Nix, Hsiao-Ling Tseng, Chih-Cheng Tsou, Chun-Hsien Fei, Huo-Sheng Chiou, U‐Ser Jeng, Yee‐Shin Lin, Woei‐Jer Chuang, Jiunn-Jong Wu, Shuying Wang
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.ppat.1007944

Alternative conformations of a major antigenic site on RSV F
Cited by: 25
Author(s): Harrison G. Jones, Michael B. Battles, Chun-Chi Lin, Siro Bianchi, Davide Corti, Jason S. McLellan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0121764

Stability of the Octameric Structure Affects Plasminogen-Binding Capacity of Streptococcal Enolase
Cited by: 13
Author(s): Amanda J. Cork, Daniel Ericsson, Ruby H. P. Law, Lachlan W. Casey, Eugene Valkov, Carlo Bertozzi, Anna Stamp, Blagojce Jovcevski, J. Andrew Aquilina, James C. Whisstock, Mark J. Walker, Boštjan Kobe
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0034263

A Glutathione Transferase from Agrobacterium tumefaciens Reveals a Novel Class of Bacterial GST Superfamily
Cited by: 25
Author(s): Katholiki Skopelitou, Prathusha Dhavala, Anastassios C. Papageorgiou, Nikolaos E. Labrou
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0050097

Structure of the Human Discs Large 1 PDZ2– Adenomatous Polyposis Coli Cytoskeletal Polarity Complex: Insight into Peptide Engagement and PDZ Clustering
Cited by: 8
Author(s): Kevin C. Slep
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.ppat.1008323

Structural basis of Fusarium myosin I inhibition by phenamacril
Cited by: 17
Author(s): Yuxin Zhou, Xuemei Zhou, Yuanping Gong, Yuanye Zhu, Xiaoman Cao, J.S. Brunzelle, H. Eric Xu, Mingguo Zhou, Karsten Melcher, Feng Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008465

Structure of the protective nematode protease complex H-gal-GP and its conservation across roundworm parasites
Cited by: 13
Author(s): Charlotte A. Scarff, Rebecca Thompson, G. F. J. Newlands, A.H. Jamson, Christopher K. Kennaway, V.J. da Silva, Élida Mara Leite Rabelo, Chun Song, John Trinick, W.D. Smith, Stephen P. Muench
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008484

A conformation-based intra-molecular initiation factor identified in the flavivirus RNA-dependent RNA polymerase
Cited by: 24
Author(s): Jiqin Wu, Han-Qing Ye, Qiuyan Zhang, Guangquan Lu, Bo Zhang, Peng Gong
Software Mentions: 2
Published: over 6 years ago

10.1186/1472-6807-12-7

Crystal structure of a new benzoic acid inhibitor of influenza neuraminidase bound with a new tilt induced by overpacking subsite C6
Cited by: 10
Author(s): Lalitha Venkatramani, Eric S. Johnson, Gundurao Kolavi, Gillian M. Air, Wayne J. Brouillette, Blaine H. M. Mooers
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.ppat.1008619

Dynamic rotation of the protruding domain enhances the infectivity of norovirus
Cited by: 31
Author(s): Chihong Song, Reiko Takai‐Todaka, Motohiro Miki, Kei Haga, Akira Fujimoto, Ryoka Ishiyama, Kazuki Oikawa, Masahiro Yokoyama, Naoyuki Miyazaki, Katsunori Iwasaki, Kosuke Murakami, Kazuhiko Katayama, Kazuyoshi Murata
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1008530

Cryo-EM structure of the fully-loaded asymmetric anthrax lethal toxin in its heptameric pre-pore state
Cited by: 16
Author(s): Claudia Antoni, Dennis Quentin, Alexander E. Lang, Klaus Aktories, Christos Gatsogiannis, Stefan Raunser
Software Mentions: 2
Published: about 6 years ago

10.1186/1472-6807-13-30

Crystal structure of the γ-hydroxymuconic semialdehyde dehydrogenase from Pseudomonas sp. strainWBC-3, a key enzyme involved in para-Nitrophenol degradation
Cited by: 3
Author(s): Jing Su, Cong Zhang, Junjie Zhang, Tian‐Ran Wei, Deyu Zhu, Ning‐Yi Zhou, Lin Gu
Software Mentions: 2
Published: almost 13 years ago

10.1107/S0907444913002023

The structures ofArabidopsisDeg5 and Deg8 reveal new insights into HtrA proteases
Cited by: 13
Author(s): Wei Sun, Feng Gao, H. Fan, Xiaoyue Shan, Renhua Sun, Lin Liu, Weimin Gong
Software Mentions: 2
Published: over 13 years ago

10.1073/pnas.1811580115

Structure and architecture of immature and mature murine leukemia virus capsids
Cited by: 87
Author(s): Kun Qu, Bärbel Glass, Michal Doležal, F.K.M. Schur, Brice Murciano, Alan Rein, Michaela Rumlová, Tomáš Ruml, Hans‐Georg Kräusslich, John Briggs
Software Mentions: 2
Published: over 7 years ago

10.1073/pnas.1901318116

Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing
Cited by: 53
Author(s): Guido A. Stoll, Shun-ichiro Oda, Zheng-Shan Chong, Myeong-Hee Yu, Stephen H. McLaughlin, Yorgo Modis
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0076803

Elucidation of Substrate Specificity in Aspergillus nidulans UDP-Galactose-4-Epimerase
Cited by: 7
Author(s): Sean A. Dalrymple, Jennifer S. Ko, I. S. Sheoran, Susan G. W. Kaminskyj, D.A.R. Sanders
Software Mentions: 2
Published: almost 13 years ago

10.1073/pnas.1921245117

Ancient MAPK ERK7 is regulated by an unusual inhibitory scaffold required for Toxoplasma apical complex biogenesis
Cited by: 37
Author(s): Peter Back, William O’Shaughnessy, Andy S Moon, Pravin S Dewangan, Xiaoyu Hu, Jihui Sha, James A. Wohlschlegel, Peter J. Bradley, Michael L. Reese
Software Mentions: 2
Published: over 6 years ago

10.1073/pnas.2006231117

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6
Cited by: 35
Author(s): Ziming Yuan, Sarah Schneider, Thomas Dodd, Alberto Riera, Lin Bai, Yan Cheng, Marta Barbon, Indiana Magdalou, Ivaylo Ivanov, Bruce Stillman, Li H, Christian Speck
Software Mentions: 2
Published: about 6 years ago

10.1042/BCJ20160806

Neisseria meningitidis factor H-binding protein bound to monoclonal antibody JAR5: implications for antibody synergy
Cited by: 18
Author(s): E. Malito, Paola Lo Surdo, Daniele Veggi, Laura Santini, Heather Stefek, Brunella Brunelli, Enrico Luzzi, Matthew J. Bottomley, Peter T. Beernink, María Scarselli
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.43584

Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer’s and Pick’s diseases
Cited by: 270
Author(s): W Zhang, Benjamin Falcon, Alexey G. Murzin, Jiaqin Fan, R. Anthony Crowther, Michel Goedert, Sjors H.W. Scheres
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.31473

Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids
Cited by: 74
Author(s): Christopher John Schlicksup, Joseph Che Yen Wang, Samson Francis, Balasubramanian Venkatakrishnan, William W. Turner, Michael S. VanNieuwenhze, Adam Zlotnick
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.50155

Structural model for differential cap maturation at growing microtubule ends
Cited by: 42
Author(s): Juan Estévez-Gallego, Fernando Josa-Prado, Siou Ku, Rubén M. Buey, Francisco A Balaguer, A.E. Prota, Daniel Lucena‐Agell, Christina S. Kamma-Lorger, Toshiki Yagi, Hiroyuki Iwamoto, Laurence Duchesne, Isabel Barasoaín, Michel O. Steinmetz, Denis Chrétien, Shinji Kamimura, J. Fernando Díaz, M.A. Oliva
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.59038

Molecular principles of assembly, activation, and inhibition in epithelial sodium channel
Cited by: 33
Author(s): Sigrid Noreng, Richard Posert, Arpita Bharadwaj, Alexandra Houser, Isabelle Baconguis
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.56427

Chemical and structural investigation of the paroxetine-human serotonin transporter complex
Cited by: 46
Author(s): Jonathan A. Coleman, Vikas Navratna, Daniele Antermite, Dongxue Yang, James A. Bull, Eric Gouaux
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.17063

Crystal structure of an HIV assembly and maturation switch
Cited by: 119
Author(s): Jonathan M. Wagner, Kaneil K. Zadrozny, Jakub Chrustowicz, Michael D. Purdy, Mark Yeager, Barbie K. Ganser‐Pornillos, Owen Pornillos
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.03275

Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks
Cited by: 73
Author(s): Suwen Zhao, A. Sakai, Xinshuai Zhang, M.W. Vetting, Ritesh Kumar, B. Hillerich, Brian San Francisco, José O. Solbiati, Adam Steves, Shoshana D. Brown, Eyal Akiva, Alan E. Barber, R.D. Seidel, Patricia C. Babbitt, Steven C. Almo, J.A. Gerlt, Matthew P. Jacobson
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.59530

Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex
Cited by: 35
Author(s): C.L. Durie, M.J. Sheedlo, Jeong Min Chung, Brenda Byrne, Min Su, Thomas J. Knight, Michele S. Swanson, D. Borden Lacy, Melanie D. Ohi
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.52337

A dynamic interaction between CD19 and the tetraspanin CD81 controls B cell co-receptor trafficking
Cited by: 35
Author(s): Katherine J. Susa, T.C.M. Seegar, Stephen C. Blacklow, Andrew C. Kruse
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.03600

Structure of catalase determined by MicroED
Cited by: 110
Author(s): Brent L. Nannenga, Dan Shi, Johan Hattne, F.E. Reyes, Tamir Gonen
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.17523

Coordinated recruitment of Spir actin nucleators and myosin V motors to Rab11 vesicle membranes
Cited by: 50
Author(s): Olena Pylypenko, Tobias Welz, Janine Tittel, Martin Kollmar, Florian Chardon, Gilles Malherbe, Sabine Weiß, Carina Ida Luise Michel, Annette Samol-Wolf, Andreas T. Grasskamp, Alistair N. Hume, Bruno Goud, Bruno Baron, Patrick England, Margaret A. Titus, Petra Schwille, Thomas Weidemann, Anne Houdusse, Eugen Kerkhoff
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.24905

An allosteric transport mechanism for the AcrAB-TolC multidrug efflux pump
Cited by: 168
Author(s): Zhao Wang, Guizhen Fan, Corey F. Hryc, James N. Blaza, Irina I. Serysheva, Michael F. Schmid, Wah Chiu, B.F. Luisi, Dijun Du
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.12256

Human Holliday junction resolvase GEN1 uses a chromodomain for efficient DNA recognition and cleavage
Cited by: 26
Author(s): Shun-Hsiao Lee, Lissa Nicola Princz, Maren Klügel, Bianca Habermann, Boris Pfander, C. Biertumpfel
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.61446

The flagellar motor of Vibrio alginolyticus undergoes major structural remodeling during rotational switching
Cited by: 41
Author(s): Brittany L. Carroll, Tatsuro Nishikino, Wangbiao Guo, S. J. Zhu, Seiji Kojima, Michio Homma, Jun Li
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.30244

Structure-based nuclear import mechanism of histones H3 and H4 mediated by Kap123
Cited by: 18
Author(s): Soon Il An, Jung Min Yoon, Hanseong Kim, Ji-Joon Song, Uhn‐Soo Cho
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.43075

High resolution cryo-EM structure of the helical RNA-bound Hantaan virus nucleocapsid reveals its assembly mechanisms
Cited by: 26
Author(s): Benoît Arragain, Juan Reguera, Ambroise Desfosses, Irina Gutsche, Guy Schoehn, Hélène Malet
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.20832

The dynamic assembly of distinct RNA polymerase I complexes modulates rDNA transcription
Cited by: 58
Author(s): Eva Torreira, Jaime Alegrio Louro, Irene Pazos, Noelia González-Polo, David Gil, Ana G. Duran, Sébastien Tosi, Oriol Gallego, Olga Calvo, Carlos Fernández‐Tornero
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.24146

La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs
Cited by: 129
Author(s): Roni M. Lahr, Bruno D. Fonseca, Gabrielle E. Ciotti, Hiba A. Al-Ashtal, Jian Jun Jia, Marius Niklaus, Sarah P. Blagden, Tommy Alain, Andrea J. Berman
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.69800

Cryo-EM structures of the caspase-activated protein XKR9 involved in apoptotic lipid scrambling
Cited by: 21
Author(s): Monique S Straub, Carolina Alvadia, Marta Sawicka, Raimund Dutzler
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.41215

CryoEM structures of open dimers of gyrase A in complex with DNA illuminate mechanism of strand passage
Cited by: 23
Author(s): Katarzyna M Soczek, Tim Grant, Peter B. Rosenthal, Alfonso Mondragón
Software Mentions: 1
Published: almost 8 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287