cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/srep19981

Structural and functional attributes of malaria parasite diadenosine tetraphosphate hydrolase
Cited by: 12
Author(s): Amit Sharma, Manickam Yogavel
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M117.809657

Prodomain–growth factor swapping in the structure of pro-TGF-β1
Cited by: 29
Author(s): Bo Zhao, Shutong Xu, Xiao Dong, Chafen Lu, Timothy A. Springer
Software Mentions: 2
Published: over 8 years ago

Structure-based mechanism of cysteine-switch latency and of catalysis by pappalysin-family metallopeptidases
Cited by: 9
Author(s): Tibisay Guevara, Arturo Rodríguez-Banqueri, Mirosław Książek, Jan Potempa, F. Xavier Gomis‐Rüth
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA117.000119

Structural analysis of group II chitinase (ChtII) catalysis completes the puzzle of chitin hydrolysis in insects
Cited by: 45
Author(s): Wei Chen, Mingli Qu, Yong Zhou, Qing Yang
Software Mentions: 2
Published: over 8 years ago

10.1038/srep22127

In-situ and real-time growth observation of high-quality protein crystals under quasi-microgravity on earth
Cited by: 7
Author(s): Akira Nakamura, Jun Ohtsuka, Tatsuki Kashiwagi, Nobutaka Numoto, Noriyuki Hirota, Takahiro Ode, Hidehiko Okada, Koji Nagata, Motosuke Kiyohara, E Suzuki, Akiko Kita, Hitoshi Wada, Masaru Tanokura
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M117.816348

Exceptionally high-affinity Ras binders that remodel its effector domain
Cited by: 33
Author(s): John H. McGee, So Youn Shim, Seung-Joo Lee, Paige Swanson, Sam Y. Jiang, Michael A. Durney, Gregory L. Verdine
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.62117

Structural basis for transcription complex disruption by the Mfd translocase
Cited by: 31
Author(s): Jin Young Kang, Eliza Llewellyn, James Chen, Paul Dominic B. Olinares, Joshua Brewer, Brian T. Chait, Elizabeth A. Campbell, Seth A. Darst
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.22679

Evolution of substrate specificity in a retained enzyme driven by gene loss
Cited by: 21
Author(s): Ana Lilia Juárez-Vázquez, Janaka N. Edirisinghe, E.A. Verduzco-Castro, K. Michalska, Chenggang Wu, Lianet Noda-García, G. Babnigg, M. Endres, Sofía Medina-Ruiz, Julián Santoyo-Flores, Mauricio Carrillo‐Tripp, Hung Ton‐That, A. Joachimiak, Christopher S. Henry, Francisco Barona‐Gómez
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.60482

Structure of the bacterial ribosome at 2 Å resolution
Cited by: 125
Author(s): Zoe L Watson, Fred R. Ward, Raphaël Méheust, Omer Ad, Alanna Schepartz, Jillian F. Banfield, Jamie H. D. Cate
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.42400

DNA translocation mechanism of an XPD family helicase
Cited by: 32
Author(s): Kaiying Cheng, Dale B. Wigley
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.03579

Structure and substrate ion binding in the sodium/proton antiporter PaNhaP
Cited by: 82
Author(s): David Wöhlert, Werner Kühlbrandt, Özkan Yıldız
Software Mentions: 2
Published: over 11 years ago

10.1038/s42003-020-01147-1

Molecular basis of the lipid-induced MucA-MucB dissociation in Pseudomonas aeruginosa
Cited by: 6
Author(s): Tao Li, Libang He, Changcheng Li, Mei Kang, Yingjie Song, Yuanfeng Zhu, Yanjiao Shen, Ninglin Zhao, Chang Zhao, Jing Yang, Qin Huang, Xingyu Mou, Aiping Tong, Jinliang Yang, Zhenling Wang, Chengjie Ji, Hong Li, Hong Tang, Rui Bao
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.21510

Structural insights into the mechanism of the DEAH-box RNA helicase Prp43
Cited by: 75
Author(s): M.J. Tauchert, Jean‐Baptiste Fourmann, Reinhard Lührmann, Ralf Ficner
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.28020

A novel central nervous system-penetrating protease inhibitor overcomes human immunodeficiency virus 1 resistance with unprecedented aM to pM potency
Cited by: 39
Author(s): Manabu Aoki, Hironori Hayashi, Kalapala Venkateswara Rao, Debananda Das, Nobuyo Higashi-Kuwata, Haydar Bulut, Hiromi Aoki-Ogata, Yuki Takamatsu, Ravikiran S. Yedidi, David A. Davis, Shin Hattori, Noriko Nishida, Kazuya Hasegawa, Nobutoki Takamune, Prasanth R. Nyalapatla, Heather L. Osswald, Hirofumi Jono, Hideyuki Saya, Robert Yarchoan, Shogo Misumi, Arun K. Ghosh, Hiroaki Mitsuya
Software Mentions: 2
Published: almost 9 years ago

10.1038/s42003-018-0123-6

In situ serial crystallography for rapid de novo membrane protein structure determination
Cited by: 26
Author(s): Chia-Ying Huang, V. Oliéric, Nicole Howe, Rangana Warshamanage, T. Weinert, Ezequiel Panepucci, Lutz Vogeley, Shibom Basu, Kay Diederichs, Martin Caffrey, Meitian Wang
Software Mentions: 2
Published: almost 8 years ago

10.1074/jbc.RA118.005405

InhA, the enoyl-thioester reductase from Mycobacterium tuberculosis forms a covalent adduct during catalysis
Cited by: 15
Author(s): Bastian Vögeli, Raoul Rosenthal, Gabriele Stoffel, T. Wagner, Patrick Kiefer, Niña Socorro Cortina, Seigo Shima, Tobias J. Erb
Software Mentions: 2
Published: almost 8 years ago

10.1074/jbc.RA118.004227

Oxidative cyclization of N-methyl-dopa by a fungal flavoenzyme of the amine oxidase family
Cited by: 3
Author(s): Majd Lahham, Tea Pavkov‐Keller, Michael Fuchs, Johannes Niederhauser, Gabriel Chalhoub, Bastian Daniel, Wolfgang Kroutil, Karl Gruber, Peter Macheroux
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.57887

The architecture of EMC reveals a path for membrane protein insertion
Cited by: 72
Author(s): John P. O’Donnell, Ben P. Phillips, Yuichi Yagita, Szymon Juszkiewicz, Armin Wagner, Duccio Malinverni, Robert J. Keenan, Elizabeth A. Miller, Ramanujan S. Hegde
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms130810010

Effects of a Buried Cysteine-To-Serine Mutation on Yeast Triosephosphate Isomerase Structure and Stability
Cited by: 6
Author(s): Alejandra Hernández-Santoyo, Lenin Domínguez-Ramírez, César A. Reyes-López, Edith González-Mondragón, Andrés Hernández‐Arana, Adela Rodrı́guez-Romero
Software Mentions: 2
Published: about 14 years ago

10.1074/jbc.RA118.003857

The structure of the deubiquitinase USP15 reveals a misaligned catalytic triad and an open ubiquitin-binding channel
Cited by: 33
Author(s): Stephanie J. Ward, Hayley E. Gratton, Peni Indrayudha, Camille Michavila, Rishov Mukhopadhyay, Sigrun K. Maurer, Simon G. Caulton, Jonas Emsley, Ingrid Dreveny
Software Mentions: 2
Published: almost 8 years ago

10.1038/s42003-021-02326-4

Structure-based insights into evolution of rhodopsins
Cited by: 13
Author(s): Dmitrii Zabelskii, Natalia I. Dmitrieva, Oleksandr Volkov, Vitaly Shevchenko, Kirill Kovalev, Taras Balandin, Dmytro Soloviov, Roman Astashkin, Egor V. Zinovev, Alexey Alekseev, Ekaterina Round, Vitaly Polovinkin, Igor Chizhov, Andrey Rogachev, Ivan Okhrimenko, Valentin Borshchevskiy, Vladimir Chupin, Georg Büldt, Natalia Yutin, Ernst Bamberg, Eugene V. Koonin, Valentin Gordeliy
Software Mentions: 2
Published: about 5 years ago

10.1038/srep28226

MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode
Cited by: 13
Author(s): T. Wagner, Ulrich Ermler, Seigo Shima
Software Mentions: 2
Published: about 10 years ago

10.3390/ijms17040446

Structure of the PLP-Form of the Human Kynurenine Aminotransferase II in a Novel Spacegroup at 1.83 Å Resolution
Cited by: 13
Author(s): Alireza Nematollahi, Guorong Sun, S.J. Harrop, Jane R. Hanrahan, W. Bret Church
Software Mentions: 2
Published: over 10 years ago

10.1038/srep28488

Structural basis for autoinhibition and its relief of MOB1 in the Hippo pathway
Cited by: 27
Author(s): Sunyong Kim, Yuka Tachioka, Tomoyuki Mori, Toshio Hakoshima
Software Mentions: 2
Published: about 10 years ago

10.1016/j.csbj.2021.06.006

A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of Mycobacterium tuberculosis
Cited by: 13
Author(s): P. Gupta, S.E. Thomas, Shaymaa A. Zaidan, Maria A. Pasillas, J. Cory-Wright, Víctor Sebastián-Pérez, Ailidh Burgess, Emma Cattermole, C. Meghir, Chris Abell, Anthony G. Coyne, William R. Jacobs, Tom L. Blundell, Sangeeta Tiwari, V. Mendes
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms18071336

Quinolin-6-Yloxyacetamides Are Microtubule Destabilizing Agents That Bind to the Colchicine Site of Tubulin
Cited by: 9
Author(s): Ashwani Sharma, Gonzalo Sáez-Calvo, Natacha Olieric, Francisco de Asís Balaguer, Isabel Barasoaín, Clemens Lamberth, J. Fernando Díaz, Michel O. Steinmetz
Software Mentions: 2
Published: about 9 years ago

10.1038/srep29135

Identification, Characterization and X-ray Crystallographic Analysis of a Novel Type of Mannose-Specific Lectin CGL1 from the Pacific Oyster Crassostrea gigas
Cited by: 33
Author(s): Hajime Unno, Kazuki Matsuyama, Yoshiteru Tsuji, Shuichiro Goda, Keiko Hiemori, Hiroaki Tateno, Jun Hirabayashi, Tomomitsu Hatakeyama
Software Mentions: 2
Published: about 10 years ago

10.3390/ijms20061392

Crystal Structure of the Cyclostreptin-Tubulin Adduct: Implications for Tubulin Activation by Taxane-Site Ligands
Cited by: 23
Author(s): Francisco de Asís Balaguer, Tobias Mühlethaler, Juan Estévez-Gallego, Enrique Calvo, Juan F. Giménez-Abián, April L. Risinger, Erik J. Sorensen, Christopher D. Vanderwal, Karl‐Heinz Altmann, Susan L. Mooberry, Michel O. Steinmetz, M.A. Oliva, A.E. Prota, J. Fernando Díaz
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20071533

The Molecular and Structural Basis of O-methylation Reaction in Coumarin Biosynthesis in Peucedanum praeruptorum Dunn
Cited by: 13
Author(s): Yucheng Zhao, Nana Wang, Ziwei Sui, C.H. Huang, Zhixiong Zeng, Ling‐Yi Kong
Software Mentions: 2
Published: over 7 years ago

10.1038/srep30494

Crystal structures of RidA, an important enzyme for the prevention of toxic side products
Cited by: 13
Author(s): Xiwen Liu, Jianhua Zeng, Xiaolei Chen, Wei Xie
Software Mentions: 2
Published: about 10 years ago

10.3390/ijms20205085

Crystal Structure-Based Exploration of Arginine-Containing Peptide Binding in the ADP-Ribosyltransferase Domain of the Type III Effector XopAI Protein
Cited by: 5
Author(s): Jyung-Hurng Liu, Jun-Yi Yang, Duen-Wei Hsu, Yi-Hua Lai, Yun-Pei Li, Yi-Rung Tsai, Ming-Hon Hou
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20246279

Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4
Cited by: 13
Author(s): Paula Giménez-Mascarell, Iker Oyenarte, Irene González‐Recio, Carmen Fernández‐Rodríguez, María Ángeles Corral-Rodríguez, Igone Campos-Zarraga, Jorge Simón, Elie Kostantin, Serge Hardy, Antonio Díaz-Quintana, Mara Zubillaga Lizeaga, Nekane Merino, Tammo Diercks, Francisco J. Blanco, Irene Dίaz–Moreno, María Luz Martínez‐Chantar, Michel L. Tremblay, Dominik Müller, Dritan Siliqi, Luis Alfonso Martínez-Cruz
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21010083

The Structure of Sucrose-Soaked Levansucrase Crystals from Erwinia tasmaniensis reveals a Binding Pocket for Levanbiose
Cited by: 14
Author(s): Ivan Polsinelli, Rosanna Caliandro, Nicola Demitri, Stefano Benini
Software Mentions: 2
Published: over 6 years ago

10.1016/j.csbj.2015.08.005

Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution
Cited by: 22
Author(s): Xiaojun Xu, Yan Cheng, Robert M. Wohlhueter, Ivaylo Ivanov
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.RA118.007285

A low-potential terminal oxidase associated with the iron-only nitrogenase from the nitrogen-fixing bacterium Azotobacter vinelandii
Cited by: 19
Author(s): Febin Varghese, B.V. Kabasakal, Charles A. R. Cotton, Julia Schumacher, A. William Rutherford, Andrea Fantuzzi, James W. Murray
Software Mentions: 2
Published: about 7 years ago

10.1074/jbc.RA119.008610

Alternative folding to a monomer or homopolymer is a common feature of the type 1 pilus subunit FimA from enteroinvasive bacteria
Cited by: 7
Author(s): Dawid Zyla, A.E. Prota, Guido Capitani, Rudi Glockshuber
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms21072600

Structural Characterization of an ACP from Thermotoga maritima: Insights into Hyperthermal Adaptation
Cited by: 8
Author(s): Yeongjoon Lee, Ahjin Jang, Min‐Cheol Jeong, Nuri Park, Jungwoo Park, Woo Cheol Lee, Chaejoon Cheong, Yangmee Kim
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21093332

Polysaccharide-Based Injection Matrix for Serial Crystallography
Cited by: 25
Author(s): Ki Hyun Nam
Software Mentions: 2
Published: over 6 years ago

10.1038/srep33905

Structural and histone binding ability characterization of the ARB2 domain of a histone deacetylase Hda1 from Saccharomyces cerevisiae
Cited by: 7
Author(s): Hui Shen, Yuwei Zhu, Chongyuan Wang, Hui Yan, Maikun Teng, Li Xu
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijms21155277

Biophysical Characterization of Cancer-Related Carbonic Anhydrase IX
Cited by: 4
Author(s): Katarina Koruza, Akilah B. Murray, Brian P. Mahon, Jesse B. Hopkins, Wolfgang Knecht, Robert McKenna, S.Z. Fisher
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21165915

Biochemical Characterization and Crystal Structure of a Novel NAD+-Dependent Isocitrate Dehydrogenase from Phaeodactylum tricornutum
Cited by: 5
Author(s): Shiping Huang, Luchun Zhou, Bin Wen, Peng Wang
Software Mentions: 2
Published: about 6 years ago

10.3390/cells8060570

An Emerin LEM-Domain Mutation Impairs Cell Response to Mechanical Stress
Cited by: 12
Author(s): Nada Essawy, Camille Samson, Ambre Petitalot, Sophie Moog, Anne Bigot, Isaline Herrada, Agathe Marcelot, Ana-Andreea Arteni, Catherine Coirault, Sophie Zinn‐Justin
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms21197081

Impact of HLA-DR Antigen Binding Cleft Rigidity on T Cell Recognition
Cited by: 5
Author(s): Christopher Szeto, Joseph Bloom, Hannah Sloane, Christian A. Lobos, James Fodor, Dhilshan Jayasinghe, D.S.M. Chatzileontiadou, Emma J. Grant, Ashley M. Buckle, Stéphanie Gras
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep34998

Crystal structure of a DNA aptamer bound to PvLDH elucidates novel single-stranded DNA structural elements for folding and recognition
Cited by: 26
Author(s): S.J. Choi, Changill Ban
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep36782

Artificial Blood for Dogs
Cited by: 21
Author(s): Kana Yamada, Kyoko Yokomaku, Moeka Kureishi, Motofusa Akiyama, Kiyohito Kihira, Teruyuki Komatsu
Software Mentions: 2
Published: almost 10 years ago

10.1016/j.csbj.2021.05.035

Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker
Cited by: 6
Author(s): N.M. Hoitsma, Timothy H. Click, Pratul K. Agarwal, Bret Freudenthal
Software Mentions: 2
Published: over 5 years ago

10.1038/srep38183

Discovery and structural characterisation of new fold type IV-transaminases exemplify the diversity of this enzyme fold
Cited by: 32
Author(s): Tea Pavkov‐Keller, Gernot A. Strohmeier, Matthias Diepold, W.P.H. Peeters, Natascha Smeets, Martin Schürmann, Karl Gruber, Helmut Schwab, Kerstin Steiner
Software Mentions: 2
Published: over 9 years ago

10.1038/srep36628

Application of profile fitting method to neutron time-of-flight protein single crystal diffraction data collected at the iBIX
Cited by: 12
Author(s): Naomine Yano, Taro Yamada, Takamitsu Hosoya, Takashi Ohhara, Ichiro Tanaka, Katsuhiro Kusaka
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms22063219

Crystal Structure of a Phospholipase D from the Plant-Associated Bacteria Serratia plymuthica Strain AS9 Reveals a Unique Arrangement of Catalytic Pocket
Cited by: 7
Author(s): Fanghua Wang, Siyu Liu, Xuejing Mao, Ruiguo Cui, Bo Yang, Yonghua Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/srep38137

Engineering of a thermostable esterase Est816 to improve its quorum-quenching activity and the underlying structural basis
Cited by: 11
Author(s): Xiwen Liu, Liping Cao, Xiaoran Fan, Yuhuan Liu, Wei Xie
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms22094769

Crystal Structure of Escherichia coli Agmatinase: Catalytic Mechanism and Residues Relevant for Substrate Specificity
Cited by: 4
Author(s): Pablo Maturana, Marı́a S. Orellana, Sixto M. Herrera, Ignacio Martı́nez, Maximiliano Figueroa, José Martínez‐Oyanedel, Víctor Castro‐Fernández, Elena Uribe
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.014924

Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance
Cited by: 8
Author(s): Jūrate ̇ Fahrig-Kamarauskait≑, Kathrin Würth-Roderer, Helen V. Thorbjørnsrud, Susanne Mailand, Ute Krengel, Peter Kast
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.016295

Antibiotic binding releases autoinhibition of the TipA multidrug-resistance transcriptional regulator
Cited by: 2
Author(s): Xuping Jiang, Linjuan Zhang, Maikun Teng, Li Xu
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22136830

‘All That Glitters Is Not Gold’: High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses
Cited by: 6
Author(s): Sohini Chakraborti, Kaushik Hatti, Narayanaswamy Srinivasan
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22136859

Sub-3 Å Cryo-EM Structures of Necrosis Virus Particles via the Use of Multipurpose TEM with Electron Counting Camera
Cited by: 1
Author(s): Chun-Hsiung Wang, Donghua Chen, Shih-Hsin Huang, Yimin A. Wu, Yiyun Chen, Y. Hwu, David Bushnell, Roger D. Kornberg, Wen Ho Chang
Software Mentions: 2
Published: about 5 years ago

10.1038/srep41487

Identification of a novel selective PPARγ ligand with a unique binding mode and improved therapeutic profile in vitro
Cited by: 15
Author(s): Wei Yi, Jingjing Shi, Guanguan Zhao, Xuemei Zhou, Kelly Suino-Powell, Karsten Melcher, H. Eric Xu
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms22179140

Structural and Functional Characterizations of Cancer Targeting Nanoparticles Based on Hepatitis B Virus Capsid
Cited by: 0
Author(s): Yunseok Heo, Hyomin Jeong, Youngki Yoo, Ji-Hye Yun, Bumhan Ryu, Young-je Cha, Boram Lee, Ye-Eun Jeon, Jongmin Kim, S.-H. Jeong, Eunji Jo, Jae Sung Woo, Jeewon Lee, Hyun-Soo Cho, Weontae Lee
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.015444

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors
Cited by: 15
Author(s): Sai Shashank Chavali, Sachitanand M. Mali, Jermaine L. Jenkins, Rudi Fasan, Joseph E. Wedekind
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms221910640

Trop2 Forms a Stable Dimer with Significant Structural Differences within the Membrane-Distal Region as Compared to EpCAM
Cited by: 10
Author(s): Miha Pavšič
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms221910862

Loops around the Heme Pocket Have a Critical Role in the Function and Stability of BsDyP from Bacillus subtilis
Cited by: 7
Author(s): Carolina Rodrigues, Patrícia T. Borges, Magalí F. Scocozza, Diogo Silva, André Taborda, Vânia Brissos, Carlos Frazão, Lı́gia O. Martins
Software Mentions: 2
Published: almost 5 years ago

10.1021/acs.cgd.0c01608

Production of Cross-Linked Lipase Crystals at a Preparative Scale
Cited by: 10
Author(s): Raquel Fernández-Penas, Cristóbal Verdugo‐Escamilla, Sergio Martínez‐Rodríguez, José A. Gavira
Software Mentions: 2
Published: over 5 years ago

10.1186/s12951-019-0512-0

Design and site-directed compartmentalization of gold nanoclusters within the intrasubunit interfaces of ferritin nanocage
Cited by: 16
Author(s): Jiachen Zang, Bowen Zheng, Xiuqing Zhang, Paolo Arosio, Guanghua Zhao
Software Mentions: 2
Published: about 7 years ago

10.1038/srep42971

Structure of a LOV protein in apo-state and implications for construction of LOV-based optical tools
Cited by: 16
Author(s): Vladimir Arinkin, Joachim Granzin, Katrin Röllen, Ulrich Krauß, Karl‐Erich Jaeger, Dieter Willbold, Renu Batra‐Safferling
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42711

Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage ΦAB6 tailspike protein
Cited by: 37
Author(s): I‐Ming Lee, I-Fan Tu, Yang Fu, Tzu‐Ping Ko, Jiahn-Haur Liao, Ning Lin, Chung‐Yi Wu, Chien‐Tai Ren, Andrew H.‐J. Wang, Ching-Ming Chang, Kai‐Fa Huang, Shih‐Hsiung Wu
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.RA120.013649

Molecular basis for histone H3 “K4me3-K9me3/2” methylation pattern readout by Spindlin1
Cited by: 13
Author(s): Fan Zhao, Yunan Liu, Xuantao Su, Jieun Lee, Yinglin Song, Daliang Wang, Kai Ge, Juntao Gao, Michael Q. Zhang, Haitao Li
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.015050

KPC-2 β-lactamase enables carbapenem antibiotic resistance through fast deacylation of the covalent intermediate
Cited by: 11
Author(s): Shrenik Mehta, I. Furey, O.A. Pemberton, David M. Boragine, Yu Chen, Timothy Palzkill
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.21652

Structural basis of the therapeutic anti-PD-L1 antibody atezolizumab
Cited by: 54
Author(s): Fei Zhang, Xiaoqiang Qi, Xiaoxiao Wang, Diyang Wei, Jiawei Wu, Lingling Feng, Haiyan Cai, Yugang Wang, Naiyan Zeng, Ting Xu, Aiwu Zhou, Ying Zheng
Software Mentions: 2
Published: almost 9 years ago

10.1038/s42003-020-01546-4

Structural basis of Naa20 activity towards a canonical NatB substrate
Cited by: 3
Author(s): Dominik Layer, Jürgen Kopp, Miriam Fontanillo, Maja Köhn, Karine Lapouge, Irmgard Sinning
Software Mentions: 2
Published: over 5 years ago

10.1155/2017/4342789

Identification, Characterization, and Structure of Tm16 fromTrichuris muris
Cited by: 10
Author(s): Zhuyun Liu, Alan Kelleher, Shanii Tabb, Junfei Wei, Jeroen Pollet, Peter J. Hotez, María Elena Bottazzi, Bin Zhan, Oluwatoyin A. Asojo
Software Mentions: 2
Published: over 9 years ago

10.1098/rsob.120142

Structure and function of cytidine monophosphate kinase from Yersinia pseudotuberculosis , essential for virulence but not for survival
Cited by: 11
Author(s): Nicola Walker, Elizabeth A. Clark, Donna C. Ford, Helen L. Bullifent, Erin V. McAlister, Melanie Duffield, K. Ravi Acharya, Petra C. F. Oyston
Software Mentions: 2
Published: over 13 years ago

10.1038/s42003-020-01633-6

Elucidating the tunability of binding behavior for the MERS-CoV macro domain with NAD metabolites
Cited by: 3
Author(s): Meng-Hsuan Lin, Chao-Cheng Cho, Yi‐Chih Chiu, Chia‐Yu Chien, Yiping Huang, Chi‐Fon Chang, Chun‐Hua Hsu
Software Mentions: 2
Published: over 5 years ago

10.1038/srep08560

The catalytic role of the M2 metal ion in PP2Cα
Cited by: 16
Author(s): Chang Pan, Junyi Tang, Yaping Xu, Xiao Peng, Hongda Liu, Hao-an Wang, Wenbo Wang, Fanyue Meng, Xiao Yu, Junying Sun
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.RA120.016313

Active site metals mediate an oligomeric equilibrium in Plasmodium M17 aminopeptidases
Cited by: 2
Author(s): Tess R. Malcolm, Matthew J. Belousoff, Hariprasad Venugopal, Natalie A. Borg, N. Drinkwater, Sarah C. Atkinson, Sheena McGowan
Software Mentions: 2
Published: over 5 years ago

10.1098/rsob.150128

Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA
Cited by: 22
Author(s): Akihisa Osakabe, Fumiya Adachi, Yasuhiro Arimura, Kazuhira Maehara, Yasuyuki Ohkawa, Hitoshi Kurumizaka
Software Mentions: 2
Published: almost 11 years ago

10.1098/rsob.160053

Structure of astrotactin-2: a conserved vertebrate-specific and perforin-like membrane protein involved in neuronal development
Cited by: 28
Author(s): Ni Tien, K. Harlos, Robert J.C. Gilbert
Software Mentions: 2
Published: over 10 years ago

10.1098/rsob.160090

Structural and biochemical analyses of monoubiquitinated human histones H2B and H4
Cited by: 32
Author(s): Shuichi Machida, Satoshi Sekine, Yuka Nishiyama, Naoki Horikoshi, Hitoshi Kurumizaka
Software Mentions: 2
Published: about 10 years ago

10.1098/rsob.160127

Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A
Cited by: 24
Author(s): Naoki Horikoshi, Yasuhiro Arimura, Hiroyuki Taguchi, Hitoshi Kurumizaka
Software Mentions: 2
Published: about 10 years ago

10.1098/rsob.160157

Exploring the active site of the Streptococcus pneumoniae topoisomerase IV–DNA cleavage complex with novel 7,8-bridged fluoroquinolones
Cited by: 18
Author(s): Ivan Laponogov, Xiao Su Pan, D. A. Veselkov, Ryan T. Cirz, Allan S. Wagman, Heinz Moser, L. Mark Fisher, Mark Sanderson
Software Mentions: 2
Published: almost 10 years ago

10.1016/j.jsb.2015.08.009

Polyhedra structures and the evolution of the insect viruses
Cited by: 23
Author(s): Xiaoyun Ji, Danny Axford, Robin L. Owen, Gwyndaf Evans, H. Ginn, Geoff Sutton, David I. Stuart
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-017-00147-2

PRL3 phosphatase active site is required for binding the putative magnesium transporter CNNM3
Cited by: 41
Author(s): Huizhi Zhang, Guennadi Kozlov, Xinlu Li, Howie Wu, Irina Gulerez, Kalle Gehring
Software Mentions: 2
Published: over 9 years ago

10.1016/j.jsb.2014.12.002

Seeing tobacco mosaic virus through direct electron detectors
Cited by: 82
Author(s): Simon A. Fromm, Tanmay A. M. Bharat, Arjen J. Jakobi, Wim J. H. Hagen, Carsten Sachse
Software Mentions: 2
Published: over 11 years ago

10.1016/j.jsb.2016.08.006

Structures of type IV pilins from Thermus thermophilus demonstrate similarities with type II secretion system pseudopilins
Cited by: 11
Author(s): V. Karuppiah, Angela Thistlethwaite, Jeremy P. Derrick
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.RA120.014005

Structural comparisons of host and African swine fever virus dUTPases reveal new clues for inhibitor development
Cited by: 6
Author(s): Rui Liang, Gang Wang, Ding Zhang, Gang Ye, Mengxia Li, Yuejun Shi, Jiale Shi, Huanchun Chen, Guiqing Peng
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jsb.2016.01.016

Easy mammalian expression and crystallography of maltose-binding protein-fused human proteins
Cited by: 31
Author(s): Marcel Bokhove, Hamed Sadat Al Hosseini, Takako Saitô, Elisa Dioguardi, Katharina Gegenschatz‐Schmid, Kaoru Nishimura, Isha Raj, Daniele de Sanctis, Ling Han, Luca Jovine
Software Mentions: 2
Published: over 10 years ago

10.1016/j.dib.2017.10.051

Datasets, processing and refinement details for Mtb -AnPRT: inhibitor structures with various space groups
Cited by: 2
Author(s): G.L. Evans, Daniel P. Furkert, Nacim Abermil, Preeti Kundu, Katrina M. de Lange, E.J. Parker, Margaret A. Brimble, Edward N. Baker, J.S. Lott
Software Mentions: 2
Published: over 8 years ago

10.1016/j.yjsbx.2020.100028

A complex between the Zika virion and the Fab of a broadly cross-reactive neutralizing monoclonal antibody revealed by cryo-EM and single particle analysis at 4.1 Å resolution
Cited by: 3
Author(s): Anu Tyagi, Tofayel Ahmed, Jing Shi, Shashi Bhushan
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-01186-5

Small methyltransferase RlmH assembles a composite active site to methylate a ribosomal pseudouridine
Cited by: 12
Author(s): Cha San Koh, Rohini Madireddy, Timothy J. Beane, Phillip D. Zamore, А.A. Коростелев
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-00917-y

A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Cited by: 21
Author(s): Shigetoshi Oiki, Bunzo Mikami, Yukie Maruyama, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: over 9 years ago

10.1016/j.yjsbx.2020.100024

Cryo-electron microscopic and X-ray crystallographic analysis of the light-driven proton pump proteorhodopsin reveals a pentameric assembly
Cited by: 4
Author(s): Stephan Hirschi, David Kalbermatter, Zöhre Ucurum, Dimitrios Fotiadis
Software Mentions: 2
Published: over 6 years ago

10.1016/j.yjsbx.2020.100030

Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Cited by: 3
Author(s): Yuta Sato, Takashi Yabuki, Naruhiko Adachi, Toshio Moriya, T. Arakawa, Masato Kawasaki, Chihaya Yamada, Toshiya Senda, Shinya Fushinobu, Takayoshi Wakagi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-01057-z

Structural investigations on orotate phosphoribosyltransferase from Mycobacterium tuberculosis, a key enzyme of the de novo pyrimidine biosynthesis
Cited by: 22
Author(s): Stefano Donini, Davide M. Ferraris, Riccardo Miggiano, Alberto Massarotti, Menico Rizzi
Software Mentions: 2
Published: over 9 years ago

10.1007/s10969-015-9193-6

A SelB/EF-Tu/aIF2γ-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNACys
Cited by: 1
Author(s): Takatoshi Yanagisawa, Ryohei Ishii, Yasushi Hikida, Ryuya Fukunaga, Toru Sengoku, S. Sekine, Shigeyuki Yokoyama
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-017-01989-6

Structural studies of the periplasmic portion of the diguanylate cyclase CdgH from Vibrio cholerae
Cited by: 8
Author(s): Min Xu, Yizhi Wang, Xiu‐An Yang, Tao Jiang, Wei Xie
Software Mentions: 2
Published: over 9 years ago

10.1038/s41422-021-00514-9

Humoral immune response to circulating SARS-CoV-2 variants elicited by inactivated and RBD-subunit vaccines
Cited by: 109
Author(s): Yunlong Cao, Ayijiang Yisimayi, Yali Bai, Weijin Huang, Xiaofeng Li, Zhiying Zhang, Tianjiao Yuan, Ran An, Jing Wang, Tianhe Xiao, Shuo Du, Wenping Ma, Liyang Song, Yongzheng Li, Xiang Li, Weiliang Song, Jiajing Wu, Shuo Liu, Xuemei Li, Yonghong Zhang, Bin Su, Xuesong Guo, Yu‐Sheng Wei, Chuanping Gao, Nana Zhang, Yifei Zhang, Yang Dou, Xiaoyu Xu, Rui Shi, Lan Bai, Ronghua Jin, Yingmin Ma, Cheng‐Feng Qin, Youchun Wang, Yingmei Feng, Junyu Xiao, X. Sunney Xie
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100286

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
Cited by: 5
Author(s): Tobias Irmscher, Yvette Roske, Igor Gayk, Valentin Dunsing, Salvatore Chiantia, Udo Heinemann, Stefanie Barbirz
Software Mentions: 2
Published: over 5 years ago

10.1107/S1600577518010354

High-speed raster-scanning synchrotron serial microcrystallography with a high-precision piezo-scanner
Cited by: 18
Author(s): Yuan Gao, Weihe Xu, Wuxian Shi, Alexei S. Soares, Jean Jakoncic, Stuart Myers, Bruno Martins, John M. Skinner, Qun Li, H. J. Bernstein, Seán McSweeney, Evgeny Nazaretski, Martin R. Fuchs
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-017-02823-9

Efficient Generation of Bispecific Murine Antibodies for Pre-Clinical Investigations in Syngeneic Rodent Models
Cited by: 31
Author(s): Aran F. Labrijn, Joyce Meesters, Matthew W. Bunce, Anthony A. Armstrong, Sandeep Somani, Tom Nesspor, Mark L. Chiu, Işıl Altıntaş, Sandra Verploegen, Janine Schuurman, Paul W.H.I. Parren
Software Mentions: 2
Published: about 9 years ago

10.1107/S1600577514026289

Radiation damage to nucleoprotein complexes in macromolecular crystallography
Cited by: 20
Author(s): C.S. Bury, Elspeth F. Garman, H. Ginn, Raimond B. G. Ravelli, Ian Carmichael, Geoff Kneale, J.E. McGeehan
Software Mentions: 2
Published: over 11 years ago

10.1107/S1600577520014599

High-resolution macromolecular crystallography at the FemtoMAX beamline with time-over-threshold photon detection
Cited by: 0
Author(s): Mikael Jensen, Viktor Ahlberg Gagnér, Juan Sanchez, Anders Bengtsson, Johanna Ekström, Tinna Björg Úlfarsdóttir, María-José García-Bonete, Andrius Jurgilaitis, David Kroon, Van Tuong Pham, Stefano Checcia, Hélène Coudert-Alteirac, Siawosch Schewa, Manfred Rößle, Helena Rodilla, Jan Stake, Vitali Zhaunerchyk, Jörgen Larsson, Gergely Katona
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-02805-x

A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases
Cited by: 32
Author(s): Rubén M. Buey, David Fernández‐Justel, Íñigo Marcos‐Alcalde, Graeme Winter, Paulino Gómez‐Puertas, José M. de Pereda, José Luis Revuelta
Software Mentions: 2
Published: about 9 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287