cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1186/s13059-021-02401-3

Detection of cell-free microbial DNA using a contaminant-controlled analysis framework
Cited by: 18
Author(s): Enrique Zozaya‐Valdés, Stephen Q. Wong, Jeanette Raleigh, Athena Hatzimihalis, Sarah Ftouni, Anthony T. Papenfuss, Shahneen Sandhu, Mark A. Dawson, Sarah‐Jane Dawson
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-019-1831-z

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
Cited by: 83
Author(s): Robert C. Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Álvarez, Martha L. Daviglus, Neil Schneiderman, Gregory A. Talavera, Marc D. Gellman, Bharat Thyagarajan, Jee Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica Williams-Nguyen, Michael C. Wu, Kari E. North, Justin P. Shaffer, Christopher C. Sollecito, Qibin Qi, Carmen R. Isasi, Tao Wang, Rob Knight, Robert D. Burk
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0130084

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data
Cited by: 51
Author(s): Pedro Milet Meirelles, Gilberto M. Amado‐Filho, Guilherme H. Pereira-Filho, Hudson T. Pinheiro, Rodrigo L. Moura, Jean‐Christophe Joyeux, Eric F. Mazzei, Alex Cardoso Bastos, Robert A. Edwards, Elizabeth A. Dinsdale, Rodolfo Paranhos, Eidy de Oliveira Santos, Tetsuya Iida, Kazuyoshi Gotoh, Shota Nakamura, Tomoo Sawabe, Carlos Eduardo de Rezende, Luiz M. R. Gadelha, Ronaldo B. Francini‐Filho, Cristiane Thompson, Fabiano L. Thompson
Software Mentions: 5
Published: about 11 years ago

10.1186/s40168-020-00980-0

The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut
Cited by: 33
Author(s): Jason W. Arnold, Jeffery Roach, Salvador Fabela, Emily Moorfield, Shengli Ding, R. Eric Blue, Sue F. Dagher, Scott T. Magness, Rita Tamayo, José M. Bruno-Bárcena, M. Andrea Azcárate-Peril
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-017-0297-z

Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon
Cited by: 69
Author(s): Manish Kumar Saraf, Brian D. Piccolo, Anne K. Bowlin, Kelly E. Mercer, Tanya LeRoith, Sree V. Chintapalli, Kartik Shankar, Thomas M. Badger, Laxmi Yeruva
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0243395

The applicability of forensic time since death estimation methods for buried bodies in advanced decomposition stages
Cited by: 21
Author(s): Stefan Pittner, Valentina Bugelli, M. Eric Benbow, Bianca Ehrenfellner, Angela Zissler, Carlo Pietro Campobasso, Roelof‐Jan Oostra, Maurice C. G. Aalders, Richard Zehner, Lena Lutz, Fabio Monticelli, Christian Staufer, Katharina Helm, Vilma Pinchi, Joseph P. Receveur, Janine Geißenberger, Peter Steinbacher, Jens Amendt
Software Mentions: 5
Published: over 5 years ago

10.1053/j.gastro.2020.08.007

Alterations in Intestinal Microbiota of Children With Celiac Disease at the Time of Diagnosis and on a Gluten-free Diet
Cited by: 44
Author(s): Konstantina Zafeiropoulou, Ben Nichols, Mary Mackinder, Olga Biskou, Eleni Rizou, Antonia Karanikolou, Caspar Clark, Evan G. Buchanan, Tracey Cardigan, H. J. Duncan, David Wands, Julie A. Russell, Richard Hansen, Richard K. Russell, Paraic McGrogan, Christine Edwards, Umer Zeeshan Ijaz, Konstantinos Gerasimidis
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0194131

Instar- and host-associated differentiation of bacterial communities in the Mediterranean fruit fly Ceratitis capitata
Cited by: 55
Author(s): Antonino Malacrinò, Orlando Campolo, Raúl F. Medina, Vincenzo Palmeri
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0218582

Agricultural impacts on streams near Nitrate Vulnerable Zones: A case study in the Ebro basin, Northern Spain
Cited by: 8
Author(s): Rubén Ladrera, Óscar Belmar, Rafael Tomás, Narcı́s Prat, Miguel Cañedo‐Argüelles
Software Mentions: 5
Published: almost 7 years ago

10.3389/fvets.2021.654927

Association of Broiler Litter Microbiome Composition and Campylobacter Isolation
Cited by: 7
Author(s): Robert Valeris-Chacín, Maria Pieters, Hyun Seok Hwang, Timothy J. Johnson, Randall S. Singer
Software Mentions: 5
Published: about 5 years ago

10.3389/fvets.2019.00260

A Microbiomic Analysis of a Pasture-Raised Broiler Flock Elucidates Foodborne Pathogen Ecology Along the Farm-To-Fork Continuum
Cited by: 16
Author(s): Michael J. Rothrock, Aude Locatelli, Kristina M. Feye, Andrew J Caudill, Jean Guard, Kelli L. Hiett, Steven C. Ricke
Software Mentions: 5
Published: about 7 years ago

10.3389/fvets.2020.00255

Toward Antibiotic Stewardship: Route of Antibiotic Administration Impacts the Microbiota and Resistance Gene Diversity in Swine Feces
Cited by: 24
Author(s): Nicole Ricker, Julian Trachsel, Phillip Colgan, Jennifer Jones, Jinlyung Choi, Jaejin Lee, Johann F. Coetzee, Adina Howe, Susan L. Brockmeier, Crystal L. Loving, Heather K. Allen
Software Mentions: 5
Published: over 6 years ago

10.1186/s40168-021-01134-6

SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
Cited by: 4
Author(s): Raminta Kazlauskaite, Bachar Cheaib, Chloe Heys, Umer Ijaz, Stephanie Connelly, William T. Sloan, Julie Russel, Laura Rubio, John Sweetman, Alex Kitts, Philip McGinnity, Philip Lyons, Martin S. Llewellyn
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2021.661410

Short-Term Effect in Soil Microbial Community of Two Strategies of Recovering Degraded Area in Brazilian Savanna: A Pilot Case Study
Cited by: 1
Author(s): Priscila Jane Romano Gonçalves Selari, Luiz Ricardo Olchanheski, Almir José Ferreira, Tiago do Prado Paim, Guido Calgaro, Flávio Lopes Claudio, Estênio Moreira Alves, Darliane de Castro Santos, Welington Luiz Araújo, Fabiano Guimarães Silva
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.01075

Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System
Cited by: 18
Author(s): Linta Reji, Bradley B. Tolar, Francisco P. Chávez, Christopher A. Francis
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2021.653880

Interactions Between Tsetse Endosymbionts and Glossina pallidipes Salivary Gland Hypertrophy Virus in Glossina Hosts
Cited by: 4
Author(s): Güler Demirbaş-Uzel, Antonios A. Augustinos, Vangelis Doudoumis, Andrew G. Parker, George Tsiamis, Kostas Bourtzis, Adly M. M. Abd-Alla
Software Mentions: 5
Published: about 5 years ago

10.1673/031.012.3001

Multi–predator Effects Produced by Functionally Distinct Species Vary with Prey Density
Cited by: 15
Author(s): Ben P. Werling, David M. Lowenstein, Cory S. Straub, Claudio Gratton
Software Mentions: 5
Published: over 14 years ago

10.1186/s40168-020-00858-1

Using soil bacterial communities to predict physico-chemical variables and soil quality
Cited by: 113
Author(s): Syrie M. Hermans, Hannah Buckley, Bradley S. Case, Fiona Curran-Cournane, Mykel R. Taylor, Gavin Lear
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2020.01614

Replacing Barley and Soybean Meal With By-products, in a Pasture Based Diet, Alters Daily Methane Output and the Rumen Microbial Community in vitro Using the Rumen Simulation Technique (RUSITEC)
Cited by: 7
Author(s): Pamela M. Smith, Sinéad M. Waters, David A. Kenny, T. M. Boland, J. S. Heffernan, A. K. Kelly
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2016.02143

Linking Peripartal Dynamics of Ruminal Microbiota to Dietary Changes and Production Parameters
Cited by: 37
Author(s): Hooman Derakhshani, Hein Min Tun, F.C. Cardoso, J.C. Plaizier, Ehsan Khafipour, Juan J. Loor
Software Mentions: 5
Published: over 9 years ago

10.3390/ijms20010059

We Are What We Eat: A Stoichiometric and Ecometabolomic Study of Caterpillars Feeding on Two Pine Subspecies of Pinus sylvestris
Cited by: 8
Author(s): Albert Rivas‐Ubach, Josep Peñuelas, José A. Hódar, Michal Oravec, Ljiljana Paša‐Tolić, Otmar Urban, Jordi Sardans
Software Mentions: 5
Published: over 7 years ago

10.1007/s00442-021-04861-7

From forest to fragment: compositional differences inside coastal forest moth assemblages and their environmental correlates
Cited by: 1
Author(s): Britta Uhl, Mirko Wölfling, Konrad Fiedler
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.660749

Positive Effects of Crop Diversity on Productivity Driven by Changes in Soil Microbial Composition
Cited by: 45
Author(s): Laura Stefan, Martin Hartmann, Nadine Engbersen, Johan Six, Christian Schöb
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2016.00565

Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology
Cited by: 59
Author(s): Jane Debode, Caroline De Tender, Saman Soltaninejad, Cinzia Van Malderghem, Annelies Haegeman, Inge Van der Linden, Bart Cottyn, Marc Heyndrickx, Martine Maes
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2019.02902

Exploring Soil Factors Determining Composition and Structure of the Bacterial Communities in Saline-Alkali Soils of Songnen Plain
Cited by: 42
Author(s): Shuang Wang, Lei Sun, Ning Ling, Chen Zhu, Fengqin Chi, Weiqun Li, Xiaoyu Hao, Wu Zhang, Jingyang Bian, Lei Chen, Dan Wei
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2019.00256

Soil Macroinvertebrate Presence Alters Microbial Community Composition and Activity in the Rhizosphere
Cited by: 25
Author(s): Natalie Bray, Jenny Kao‐Kniffin, Serita D. Frey, Timothy J. Fahey, Kyle Wickings
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2017.01120

The Arbuscular Mycorrhizal Fungus Funneliformis mosseae Alters Bacterial Communities in Subtropical Forest Soils during Litter Decomposition
Cited by: 31
Author(s): Heng Gui, Witoon Purahong, Kevin D. Hyde, Jianchu Xu, Peter E. Mortimer
Software Mentions: 5
Published: about 9 years ago

10.3389/fmicb.2019.00481

Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype
Cited by: 40
Author(s): Gregory Bonito, Gian Maria Niccolò Benucci, Khalid Hameed, Deborah Weighill, Piet Jones, Ko‐Hsuan Chen, Daniel Jacobson, Christopher W. Schadt, Rytas Vilgalys
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2021.616730

Antarctic Water Tracks: Microbial Community Responses to Variation in Soil Moisture, pH, and Salinity
Cited by: 10
Author(s): Scott F. George, Noah Fierer, J. S. Levy, Byron J. Adams
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.01519

Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests
Cited by: 57
Author(s): Amélie Dukunde, Dominik Schneider, M. Schmidt, Edzo Veldkamp, Rolf Daniel
Software Mentions: 5
Published: about 7 years ago

10.1186/s40168-020-00893-y

Antimicrobial drug use in the first decade of life influences saliva microbiota diversity and composition
Cited by: 16
Author(s): Sajan C. Raju, Heli Viljakainen, Rejane Augusta de Oliveira Figueiredo, Pertti J. Neuvonen, Johan G. Eriksson, Elisabete Weiderpass, Trine B. Rounge
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2021.683685

Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood Caries
Cited by: 13
Author(s): Vivianne Cruz de Jesus, Mohd Wasif Khan, Betty-Anne Mittermuller, Kangmin Duan, Pingzhao Hu, Robert J Schroth, Prashen Chelikani
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2019.02066

Use of RNA and DNA to Identify Mechanisms of Bacterial Community Homogenization
Cited by: 16
Author(s): Kyle Meyer, Ian A. B. Petersen, Elie Tobi, Lisa Körte, Brendan J. M. Bohannan
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmed.2020.00101

Distinct Skin Microbiome and Skin Physiological Functions Between Bedridden Older Patients and Healthy People: A Single-Center Study in Japan
Cited by: 16
Author(s): Satoshi Nagase, Kazuhiro Ogai, Tamae Urai, Katsushi Shibata, Emi Matsubara, Kanae Mukai, Miki Matsue, Yosai Mori, Miku Aoki, Defa Arisandi, Junko Sugama, Shigefumi Okamoto
Software Mentions: 5
Published: over 6 years ago

10.1128/mBio.00311-19

Gut Microbiota and Phytoestrogen-Associated Infertility in Southern White Rhinoceros
Cited by: 32
Author(s): Candace L. Williams, Alexis R. Ybarra, Ashley N. Meredith, Barbara S. Durrant, Christopher W. Tubbs
Software Mentions: 5
Published: over 7 years ago

10.1128/mBio.01193-19

Determination of an Interaction Network between an Extracellular Bacterial Pathogen and the Human Host
Cited by: 23
Author(s): Brad Griesenauer, Tuan M. Tran, Kate R. Fortney, Diane M. Janowicz, Paula A. Johnson, Hongyu Gao, Stephen Barnes, Landon Wilson, Yunlong Liu, Stanley M. Spinola
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2019.01665

Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms
Cited by: 97
Author(s): Katharina Kesy, Sonja Oberbeckmann, Bernd Kreikemeyer, Matthias Labrenz
Software Mentions: 5
Published: about 7 years ago

10.1128/mBio.00575-18

Microbiota and Metatranscriptome Changes Accompanying the Onset of Gingivitis
Cited by: 76
Author(s): Emily M. Nowicki, Raghav Shroff, Jacqueline A. Singleton, Diane E. Renaud, Debra L. Wallace, Julie Drury, Jolene Zirnheld, Brock Colleti, Andrew D. Ellington, Richard J. Lamont, David A. Scott, Marvin Whiteley
Software Mentions: 5
Published: over 8 years ago

10.1093/femsec/fiy225

Highly competitive fungi manipulate bacterial communities in decomposing beech wood (Fagus sylvatica)
Cited by: 29
Author(s): Sarah Johnston, Jennifer Hiscox, Melanie Savoury, Lynne Boddy, Andrew J. Weightman
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0176338

Comparing herbaceous plant communities in active and passive riparian restoration
Cited by: 22
Author(s): Elise S. Gornish, Michael Lennox, D. J. Lewis, Kenneth W. Tate, Randall D. Jackson
Software Mentions: 5
Published: over 9 years ago

10.1128/mBio.00093-17

Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome
Cited by: 45
Author(s): Carrie A. Zapka, Jonathan W. Leff, Jessica B. Henley, J. Tittl, Elizabeth De Nardo, Melissa S. Butler, Russell K. Griggs, Noah Fierer, Sarah L. Edmonds-Wilson
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0217001

Faecal microbiota shift during weaning transition in piglets and evaluation of AO blood types as shaping factor for the bacterial community profile
Cited by: 26
Author(s): Vincenzo Motta, Diana Luise, Paolo Bosi, Paolo Trevisi
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.6219

Keeping it cool: Soil sample cold pack storage and DNA shipment up to 1 month does not impact metabarcoding results
Cited by: 17
Author(s): Camille S. Delavaux, James D. Bever, Erin M. Karppinen, Luke D. Bainard
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2019.01486

Soil Salinity and pH Drive Soil Bacterial Community Composition and Diversity Along a Lateritic Slope in the Avon River Critical Zone Observatory, Western Australia
Cited by: 39
Author(s): Flora Jane Mary O'Brien, Maya Almaraz, Melissa A. Foster, A. F. Hill, David P. Huber, Elizabeth King, Harry Langford, Mary-Anne Lowe, Bede S. Mickan, Valerie S. Miller, Oliver Moore, Falko Mathes, Deirdre Gleeson, Matthias Leopold
Software Mentions: 5
Published: about 7 years ago

10.3390/toxins13080552

Bacterial Enrichment Cultures Biotransform the Mycotoxin Deoxynivalenol into a Novel Metabolite Toxic to Plant and Porcine Cells
Cited by: 4
Author(s): Ilse Vanhoutte, Caroline De Tender, Kristel Demeyere, Mohamed F. Abdallah, Sarah Ommeslag, Pieter Vermeir, Sarah De Saeger, Jane Debode, Evelyne Meyer, Siska Croubels, Kris Audenaert, Leen De Gelder
Software Mentions: 5
Published: about 5 years ago

10.1128/mBio.02199-17

Nutrient-Dependent Impact of Microbes on Drosophila suzukii Development
Cited by: 103
Author(s): Xiao‐Li Bing, Joseph Gerlach, Gregory M. Loeb, Nicolas Buchon
Software Mentions: 5
Published: over 8 years ago

10.3389/fpls.2019.01018

Plant Diversity and Fertilizer Management Shape the Belowground Microbiome of Native Grass Bioenergy Feedstocks
Cited by: 17
Author(s): Daniel Revillini, Gail W. T. Wilson, R. M. Miller, Ryan C. Lancione, Nancy Collins Johnson
Software Mentions: 5
Published: about 7 years ago

10.7150/thno.55209

Candida albicans disorder is associated with gastric carcinogenesis
Cited by: 48
Author(s): Min Zhong, Yubo Xiong, Jiabao Zhao, Zhi Gao, Jianchao Ma, Zhengxin Wu, Yongxi Song, Xuehui Hong
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2018.01001

Environmental Characteristics and Anthropogenic Impact Jointly Modify Aquatic Macrophyte Species Diversity
Cited by: 24
Author(s): Merja Elo, Janne Alahuhta, Antti Kanninen, Kristian Meissner, Katri Seppälä, Mikko Mönkkönen
Software Mentions: 5
Published: about 8 years ago

10.3390/microorganisms9081711

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts
Cited by: 6
Author(s): Marie-Charlotte Cheutin, Sébastien Villéger, Christina C. Hicks, James P. W. Robinson, Nicholas A. J. Graham, Clémence Marconnet, Claudia Ximena Ortiz Restrepo, Yvan Bettarel, Thierry Bouvier, Jean‐Christophe Auguet
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9020262

Bacterial Diversity and Community Composition Distribution in Cold-Desert Habitats of Qinghai–Tibet Plateau, China
Cited by: 7
Author(s): Wei Zhang, Ali Bahadur, Wasim Sajjad, Gaosen Zhang, Fahad Nasir, Binglin Zhang, Xiukun Wu, Guangxiu Lu, Tuo Chen
Software Mentions: 5
Published: over 5 years ago

10.3390/toxics9090215

Subacute Exposure to an Environmentally Relevant Dose of Di-(2-ethylhexyl) Phthalate during Gestation Alters the Cecal Microbiome, but Not Pregnancy Outcomes in Mice
Cited by: 4
Author(s): Karen Chiu, Shah Tauseef Bashir, Lei Gao, Jessica Gutiérrez, María R C de Godoy, Jenny Drnevich, Christopher J. Fields, Isaac Cann, Jodi A. Flaws, Romana A. Nowak
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0238557

eDNA metabarcoding as a biomonitoring tool for marine protected areas
Cited by: 67
Author(s): Zachary Gold, Joshua Sprague, David J. Kushner, Erick Zerecero Marin, Paul H. Barber
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2017.02293

Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
Cited by: 35
Author(s): Melissa M. Arcand, David J. Levy‐Booth, Bobbi L. Helgason
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-021-96990-5

Wood ants as biological control of the forest pest beetles Ips spp.
Cited by: 8
Author(s): Gema Trigos‐Peral, Orsolya Juhász, Péter János Kiss, Gábor Módra, Anna Tenyér, István Maák
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2018.00785

SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies
Cited by: 44
Author(s): Robin R. Shields-Cutler, Gabe A. Al-Ghalith, Moran Yassour, Dan Knights
Software Mentions: 5
Published: over 8 years ago

10.3390/microorganisms8010134

Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota
Cited by: 34
Author(s): Rodrigo García-López, Fernanda Cornejo‐Granados, Alonso A. López-Zavala, Filiberto Sánchez-López, Andrés Cota-Huízar, Rogerio R. Sotelo‐Mundo, Abraham Guerrero, Alfredo Mendoza-Vargas, Bruno Gómez‐Gil, Adrián Ochoa-Leyva
Software Mentions: 5
Published: over 6 years ago

10.1186/s13071-016-1584-4

Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region
Cited by: 9
Author(s): Enrique González-Tortuero, Jakub Rusek, Inbar Maayan, Adam Petrusek, Lubomír Piálek, Stefan Laurent, Justyna Wolinska
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.ppat.1009487

Lipocalin 2 modulates dendritic cell activity and shapes immunity to influenza in a microbiome dependent manner
Cited by: 6
Author(s): Martin L. Watzenboeck, Barbara Drobits, Sophie Zahalka, Anna-Dorothea Gorki, Asma Farhat, Federica Quattrone, Anastasiya Hladik, Karin Lakovits, Gabriel Richard, Therese Lederer, Birgit Strobl, Gijs A. Versteeg, Louis Boon, Philipp Starkl, Sylvia Knapp
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pbio.1002324

Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton
Cited by: 101
Author(s): D. Yvon, Andrew P. Allen, María Cellamare, Matteo Dossena, Kevin J. Gaston, Maria Leitão, José M. Montoya, Daniel C. Reuman, Guy Woodward, Mark Trimmer
Software Mentions: 5
Published: over 10 years ago

10.1007/s00213-019-05218-y

Microbe and host interaction in gastrointestinal homeostasis
Cited by: 18
Author(s): Rachael Horne, James St. Pierre, Sufian Odeh, Michael G. Surette, Jane A. Foster
Software Mentions: 5
Published: over 7 years ago

10.3390/microorganisms9071470

Changes in Soil Microbial Communities across an Urbanization Gradient: A Local-Scale Temporal Study in the Arid Southwestern USA
Cited by: 7
Author(s): Yongjian Chen, Adalee Martinez, Sydney Cleavenger, Julia Rudolph, Albert Barberán
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-59111-2

Relative roles of biological and physical processes influencing coral recruitment during the lag phase of reef community recovery
Cited by: 19
Author(s): Marine Gouezo, Dawnette Olsudong, Katharina Fabricius, Peter Lynton Harrison, Yimnang Golbuu, Christopher Doropoulos
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-58576-5

Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration
Cited by: 49
Author(s): Obinna T. Ezeokoli, Cornelius Carlos Bezuidenhout, Mark Maboeta, Damase P. Khasa, Rasheed Adeleke
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2019.02883

Diversity-Stability Dynamics of the Amphibian Skin Microbiome and Susceptibility to a Lethal Viral Pathogen
Cited by: 37
Author(s): Xavier A. Harrison, Stephen J. Price, Kevin Hopkins, William T. M. Leung, Chris Sergeant, Trenton W. J. Garner
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-53623-2

A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome
Cited by: 41
Author(s): Shijie Deng, Heidi M.-L. Wipf, Grady Pierroz, Theodore K. Raab, Rajnish Khanna, Devin Coleman‐Derr
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.4606

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?
Cited by: 21
Author(s): Masao Higo, Ryohei Sato, Ayu Serizawa, Yuichi Takahashi, Kento Gunji, Yuya Tatewaki, Katsunori Isobe
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2018.02381

How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities
Cited by: 33
Author(s): Dirk Hölscher, Dominik Schneider, Martin Engelhaupt, Melanie Heinemann, Stephan Christel, Marini Wijayanti, Anja Meryandini, Rolf Daniel
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2017.02003

The Temperature Dependence of Phytoplankton Stoichiometry: Investigating the Roles of Species Sorting and Local Adaptation
Cited by: 46
Author(s): Gabriel Yvon‐Durocher, C‐Elisa Schaum, Mark Trimmer
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-019-51142-8

Alterations to the Gastrointestinal Microbiome Associated with Methamphetamine Use among Young Men who have Sex with Men
Cited by: 35
Author(s): Ryan Cook, Jennifer A. Fulcher, Nicole H. Tobin, Fan Li, Dong Hoon Lee, Cora L. Woodward, Marjan Javanbakht, Ron Brookmeyer, Steven Shoptaw, Robert Bolan, Grace M. Aldrovandi, Pamina M. Gorbach
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2018.01526

Bioprospecting and Structure of Fungal Endophyte Communities Found in the Brazilian Biomes, Pantanal, and Cerrado
Cited by: 34
Author(s): Sandriele Aparecida Noriler, Daiani Cristina Savi, Rodrigo Aluízio, Angela María Palacio-Cortés, Yvelise Maria Possiede, Chirlei Glienke
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0215497

Gut microbiota features associated with Clostridioides difficile colonization in puppies
Cited by: 15
Author(s): Alexander S. F. Berry, Brendan J Kelly, Denise Barnhart, Douglas G. Kelly, Daniel P. Beiting, Robert N. Baldassano, Laurel E. Redding
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0216758

An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa
Cited by: 20
Author(s): Karen Jordaan, A. Comeau, Damase P. Khasa, Cornelius Carlos Bezuidenhout
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-021-97619-3

Plant biodiversity assessment through pollen DNA metabarcoding in Natura 2000 habitats (Italian Alps)
Cited by: 13
Author(s): Kleopatra Leontidou, Despoina Vokou, Anna Sandionigi, Antonia Bruno, Maria Lazarina, Johannes De Groeve, Mingai Li, Claudio Varotto, Matteo Girardi, Andrea Galimberti, Alessandro Cristofori
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2019.03138

Rare Species Shift the Structure of Bacterial Communities Across Sphagnum Compartments in a Subalpine Peatland
Cited by: 13
Author(s): Wen Tian, Xiang Xiao, Liyuan Ma, Stephanie Evers, Ruicheng Wang, Xuan Qiu, Hongmei Wang
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-017-00223-7

Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves
Cited by: 78
Author(s): S. J. Meale, S. C. Li, Paula Azevedo, Hooman Derakhshani, T.J. DeVries, J.C. Plaizier, M.A. Steele, Ehsan Khafipour
Software Mentions: 5
Published: over 9 years ago

10.1038/s41598-017-04016-w

Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France
Cited by: 30
Author(s): Anouk Zancarini, Isidora Echenique‐Subiabre, Didier Debroas, Najwa Taïb, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 5
Published: about 9 years ago

10.1098/rsos.180041

Synchronized shift of oral, faecal and urinary microbiotas in bats and natural infection dynamics during seasonal reproduction
Cited by: 25
Author(s): Muriel Dietrich, Teresa Kearney, Ernest C.J. Seamark, Janusz T. Pawęska, Wanda Markotter
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0194336

Animal taxa contrast in their scale-dependent responses to land use change in rural Africa
Cited by: 11
Author(s): Stefan H. Foord, Lourens H. Swanepoel, Steven W. Evans, Colin S. Schoeman, Barend Erasmus, M. Corrie Schoeman, Mark Keith, Alain Smith, Evans V. Mauda, Naudene Maree, Nkhumeleni Lesly Nembudani, A.S. Dippenaar-Schoeman, Thinandavha C. Munyai, Peter J. Taylor
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.9003

Changes in the gut microbiota during Asian particolored bat (Vespertilio sinensis) development
Cited by: 8
Author(s): Zongsheng Yin, Keping Sun, Aoqiang Li, Deyi Sun, Zhongle Li, Guohong Xiao, Feng Jiang
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.447

Mobile phones carry the personal microbiome of their owners
Cited by: 127
Author(s): James F. Meadow, Adam E. Altrichter, Jessica L. Green
Software Mentions: 5
Published: about 12 years ago

10.7717/peerj.3098

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests
Cited by: 107
Author(s): Luis E. Castañeda, Olga Barbosa
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2018.01909

Intensified Pulse Rotations Buildup Pea Rhizosphere Pathogens in Cereal and Pulse Based Cropping Systems
Cited by: 25
Author(s): Yining Niu, Luke D. Bainard, William E. May, Zakir Hossain, Chantal Hamel, Yantai Gan
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2021.617280

Electron Acceptor Availability Shapes Anaerobically Methane Oxidizing Archaea (ANME) Communities in South Georgia Sediments
Cited by: 9
Author(s): Annika Schnakenberg, David A. Aromokeye, Ajinkya Kulkarni, Lisa Maier, Lea C Wunder, Tim Richter-Heitmann, Thomas Pape, Petra Pop Ristova, Solveig I Bühring, Ingrid Dohrmann, Gerhard Bohrmann, Sabine Kasten, Michael W. Friedrich
Software Mentions: 5
Published: over 5 years ago

10.12688/f1000research.17706.3

Health and saliva microbiomes of a semi-urbanized indigenous tribe in Peninsular Malaysia
Cited by: 5
Author(s): Li-Fang Yeo, Farhang Aghakhanian, J. Tan, Han Ming Gan, Maude E. Phipps
Software Mentions: 5
Published: about 7 years ago

10.1016/j.soilbio.2021.108391

Comparing root exudate collection techniques: An improved hybrid method
Cited by: 37
Author(s): Alex Williams, Holly Langridge, Angela L. Straathof, Graeme Fox, Howbeer Muhammadali, Katherine A. Hollywood, Yun Xu, Royston Goodacre, Franciska T. de Vries
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0223691

The bacterial community in potato is recruited from soil and partly inherited across generations
Cited by: 31
Author(s): Franziska Buchholz, Livio Antonielli, Tanja Kostić, Angela Sessitsch, Birgit Mitter
Software Mentions: 5
Published: almost 7 years ago

10.3390/microorganisms9071374

The Microbiome Associated with the Reef Builder Neogoniolithon sp. in the Eastern Mediterranean
Cited by: 2
Author(s): Shany Gefen-Treves, Alexander Bartholomäus, Fabian Horn, Adam Boleslaw Zaborowski, Dan Tchernov, Dirk Wagner, Aharon Oren, Aaron Kaplan
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0182342

Community- and government-managed marine protected areas increase fish size, biomass and potential value
Cited by: 23
Author(s): Angelica Chirico, Timothy R. McClanahan, Johan Eklöf
Software Mentions: 5
Published: about 9 years ago

10.1002/mbo3.681

Do composition and diversity of bacterial communities and abiotic conditions of spring water reflect characteristics of groundwater ecosystems exposed to different agricultural activities?
Cited by: 4
Author(s): Karsten Karczewski, Patricia Göbel, Elisabeth I. Meyer
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2019.02118

Defining the Distinct Skin and Gut Microbiomes of the Northern Pike (Esox lucius)
Cited by: 20
Author(s): Elizabeth M. Reinhart, Benjamin J. Korry, Aislinn D. Rowan-Nash, Peter Belenky
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0223949

Megabenthic communities of the Ligurian deep continental shelf and shelf break (NW Mediterranean Sea)
Cited by: 35
Author(s): Francesco Enrichetti, Carlos Domínguez-Carrió, Margherita Toma, Giorgio Bavestrello, Federico Betti, Simonepietro Canese, Marzia Bo
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0129323

Microclimatic Divergence in a Mediterranean Canyon Affects Richness, Composition, and Body Size in Saproxylic Beetle Assemblages
Cited by: 4
Author(s): Jörn Buse, Samuel Fassbender, Martin H. Entling, Tomáš Pavlı́ček
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-019-49956-7

Gut microbiome comparability of fresh-frozen versus stabilized-frozen samples from hospitalized patients using 16S rRNA gene and shotgun metagenomic sequencing
Cited by: 14
Author(s): Emma Elizabeth Ilett, Mette Jørgensen, Marc Noguera‐Julian, Gedske Daugaard, Daniel D. Murray, Marie Helleberg, Roger Paredes, Jens D Lundgren, Henrik Sengeløv, Cameron Ross MacPherson
Software Mentions: 5
Published: almost 7 years ago

10.1098/rsos.170082

Density-dependent coral recruitment displays divergent responses during distinct early life-history stages
Cited by: 54
Author(s): Christopher Doropoulos, Nicolas R. Evensen, Luis A. Gómez-Lemos, Russell C. Babcock
Software Mentions: 5
Published: over 9 years ago

10.1002/mbo3.1133

A low‐cost pipeline for soil microbiome profiling
Cited by: 5
Author(s): Anita Bollmann‐Giolai, Michael Giolai, Darren Heavens, Iain C. Macaulay, Jacob G. Malone, Matt Clark
Software Mentions: 5
Published: over 5 years ago

10.1098/rsos.170057

Absence of population structure across elevational gradients despite large phenotypic variation in mountain chickadees (Poecile gambeli)
Cited by: 20
Author(s): Carrie L. Branch, Joshua P. Jahner, Dovid Y. Kozlovsky, Thomas L. Parchman, Vladimir V. Pravosudov
Software Mentions: 5
Published: over 9 years ago

10.3390/microorganisms8121977

Alteration of Bacterial Communities in Anterior Nares and Skin Sites of Patients Undergoing Arthroplasty Surgery: Analysis by 16S rRNA and Staphylococcal-Specific tuf Gene Sequencing
Cited by: 8
Author(s): Søren Iversen, Thor Bech Johannesen, Anna Cäcilia Ingham, Sofie Marie Edslev, Staffan Tevell, Emeli Månsson, Åsa Nilsdotter-Augustinsson, Bo Söderquist, Marc Stegger, Paal Skytt Andersen
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.01429

Microbial Diversity in Bulk and Rhizosphere Soil of Ranunculus glacialis Along a High-Alpine Altitudinal Gradient
Cited by: 72
Author(s): Nadine Praeg, Harald Pauli, Paul Illmer
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.ppat.1009769

Virulence and community dynamics of fungal species with vertical and horizontal transmission on a plant with multiple infections
Cited by: 11
Author(s): Kai Fang, Jie Zhou, Lin Chen, Yuxuan Li, Ai-Ling Yang, Xing-Fan Dong, Hanbo Zhang
Software Mentions: 5
Published: about 5 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292