cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/nu11102348

Specific Wheat Fractions Influence Hepatic Fat Metabolism in Diet-Induced Obese Mice
Cited by: 6
Author(s): Daniela Gräf, Karolin Weitkunat, Andreas Dötsch, Gerhard Liebisch, Maik Döring, Ralf Krüger, Elisabeth Vatareck, Elena von Coburg, Gunnar Loh, Bernhard Watzl
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0194131

Instar- and host-associated differentiation of bacterial communities in the Mediterranean fruit fly Ceratitis capitata
Cited by: 55
Author(s): Antonino Malacrinò, Orlando Campolo, Raúl F. Medina, Vincenzo Palmeri
Software Mentions: 5
Published: over 6 years ago

10.3389/fmolb.2019.00115

Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil
Cited by: 26
Author(s): Vadakattu V. S. R. Gupta, Bangzhou Zhang, C. Ryan Penton, Julian Yu, James M. Tiedje
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms8071073

Maturational Changes Alter Effects of Dietary Phytase Supplementation on the Fecal Microbiome in Fattening Pigs
Cited by: 7
Author(s): Barbara U. Metzler‐Zebeli, Jutamat Klinsoda, Julia Vötterl, Doris Verhovsek
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0218582

Agricultural impacts on streams near Nitrate Vulnerable Zones: A case study in the Ebro basin, Northern Spain
Cited by: 8
Author(s): Rubén Ladrera, Óscar Belmar, Rafael Tomás, Narcı́s Prat, Miguel Cañedo‐Argüelles
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9030641

A Mouse Model Suggests That Heart Failure and Its Common Comorbidity Sleep Fragmentation Have No Synergistic Impacts on the Gut Microbiome
Cited by: 4
Author(s): Olfat Khannous-Lleiffe, Jesse R. Willis, Ester Saus, Ignacio Cabrera-Aguilera, Isaac Almendros, Ramón Farré, David Gozal, Núria Farré, Toni Gabaldón
Software Mentions: 5
Published: over 3 years ago

10.3390/microorganisms9050981

The Responses to Long-Term Water Addition of Soil Bacterial, Archaeal, and Fungal Communities in a Desert Ecosystem
Cited by: 5
Author(s): Ying Gao, Xiaotian Xu, Jingtao Ding, Fang Bao, Yashika G. De Costa, Wei-Qin Zhuang, Bo Wu
Software Mentions: 5
Published: over 3 years ago

10.1038/s42003-020-0914-4

Birds have peramorphic skulls, too: anatomical network analyses reveal oppositional heterochronies in avian skull evolution
Cited by: 29
Author(s): Olivia Plateau, Christian Foth
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2021.659179

Investigation of Spaceflight Induced Changes to Astronaut Microbiomes
Cited by: 25
Author(s): Michael D. Morrison, James B. Thissen, Fathi Karouia, Satish K. Mehta, Camilla Urbaniak, Kasthuri Venkateswaran, David J. Smith, Crystal Jaing
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.02738

Microbial Composition and Variability of Natural Marine Planktonic and Biofouling Communities From the Bay of Bengal
Cited by: 12
Author(s): Angelina Angelova, Gregory A. Ellis, H. W. Wijesekera, Gary J. Vora
Software Mentions: 5
Published: almost 5 years ago

10.3390/microorganisms9020346

Gut Microbiota Profile and Changes in Body Weight in Elderly Subjects with Overweight/Obesity and Metabolic Syndrome
Cited by: 13
Author(s): Alessandro Atzeni, Serena Galiè, Jananee Muralidharan, Nancy Babió, Francisco J. Tinahones, Jesús Vioque, Dolores Corella, Olga Castañer, Josep Vidal, Isabel Moreno-Indias, Laura Torres-Collado, Rebeca Fernández-Carrión, Montserrat Fitó, Romina Olbeyra, Miguel Ángel Martínez‐González, Mònica Bulló, Jordi Salas‐Salvadó
Software Mentions: 5
Published: almost 4 years ago

10.1128/mBio.02287-16

Bacterial Topography of the Healthy Human Lower Respiratory Tract
Cited by: 306
Author(s): Robert P. Dickson, John R. Erb-Downward, Christine M. Freeman, Lisa McCloskey, Nicole R. Falkowski, Gary B. Huffnagle, Jeffrey L. Curtis
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.10463

Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen
Cited by: 13
Author(s): Mohammad Farhad Vahidi, Javad Gharechahi, Mehrdad Behmanesh, Xuezhi Ding, Jianlin Han, Ghasem Hosseini Salekdeh
Software Mentions: 5
Published: almost 4 years ago

10.1128/mBio.01193-19

Determination of an Interaction Network between an Extracellular Bacterial Pathogen and the Human Host
Cited by: 23
Author(s): Brad Griesenauer, Tuan M. Tran, Kate R. Fortney, Diane M. Janowicz, Paula A. Johnson, Hongyu Gao, Stephen Barnes, Landon Wilson, Yunlong Liu, Stanley M. Spinola
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.680622

Gut Microbiota Signature Among Asian Post-gestational Diabetes Women Linked to Macronutrient Intakes and Metabolic Phenotypes
Cited by: 12
Author(s): Zubaidah Hasain, Raja Affendi Raja Ali, Shairah Abdul Razak, Kamalrul Azlan Azizan, Emad El‐Omar, Nurul Huda Razalli, Norfilza Mohd Mokhtar
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.00717

Disentangling the Influence of Environment, Host Specificity and Thallus Differentiation on Bacterial Communities in Siphonous Green Seaweeds
Cited by: 23
Author(s): Kathryn Lee Morrissey, Levent Çavaş, Anne Willems, Olivier De Clerck
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.647977

Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish Larvae
Cited by: 12
Author(s): Orlando Vargas, María Soledad Gutiérrez, Mario Caruffo, Benjamín Valderrama, Daniel A. Medina, Katherine García, Angélica Reyes-Jara, Mauricio Toro, Carmen G. Feijóo, Paola Navarrete
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.00798

Soil Bacterial Function Associated With Stylo (Legume) and Bahiagrass (Grass) Is Affected More Strongly by Soil Chemical Property Than by Bacterial Community Composition
Cited by: 18
Author(s): Zhihui Yang, Yongqiang Qin, Xiaodi Liu, Feng Zhang, Honghui Zhu, Qing Yao
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2017.00214

Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes
Cited by: 73
Author(s): Shrikant Bhute, Mangesh V. Suryavanshi, Santosh B. Joshi, Chittaranjan S. Yajnik, Yogesh S. Shouche, Surendra Ghaskadbi
Software Mentions: 5
Published: almost 8 years ago

10.1002/pld3.122

Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis
Cited by: 27
Author(s): Amy M. Sheflin, Dawn Chiniquy, Chaohui Yuan, Emily Goren, Indrajit Kumar, Max Braud, Thomas P. Brutnell, Andrea L. Eveland, Susannah G. Tringe, Peng Liu, Stephen Kresovich, Ellen L. Marsh, Daniel P. Schachtman, Jessica E. Prenni
Software Mentions: 5
Published: over 5 years ago

10.3389/fcimb.2021.579766

Preterm Birth Is Correlated With Increased Oral Originated Microbiome in the Gut
Cited by: 14
Author(s): Yin Chen, Jingrui Chen, Xiaoyi Wu, Ye-Ling Liu, He Qian, Ying Cao, Yie Huang, Sisun Liu
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2016.00606

Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria
Cited by: 28
Author(s): Vincent J. Denef, Masanori Fujimoto, Michelle A. Berry, Marian L. Schmidt
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2018.01451

Association Between Gut Microbiota and CD4 Recovery in HIV-1 Infected Patients
Cited by: 86
Author(s): Wei Lü, Yuqing Feng, Fanhui Jing, Yang Han, Na Lyu, Fei Liu, Jing Li, Xiaojing Song, Jing Xie, Zhifeng Qiu, Ting Zhu, Bertrand Routy, Jean‐Pierre Routy, Taisheng Li, Baoli Zhu
Software Mentions: 5
Published: over 6 years ago

10.3389/fcimb.2021.646348

Dysbiosis and Implication of the Gut Microbiota in Diabetic Retinopathy
Cited by: 62
Author(s): Yinhua Huang, Zhijie Wang, Hongjie Ma, Shangli Ji, Zhongping Chen, Zekai Cui, Jiansu Chen, Shibo Tang
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.00993

The Water Microbiome Through a Pilot Scale Advanced Treatment Facility for Direct Potable Reuse
Cited by: 33
Author(s): Rose Kantor, Scott Miller, Kara L. Nelson
Software Mentions: 5
Published: over 5 years ago

10.1128/mBio.00311-19

Gut Microbiota and Phytoestrogen-Associated Infertility in Southern White Rhinoceros
Cited by: 32
Author(s): Candace L. Williams, Alexis R. Ybarra, Ashley N. Meredith, Barbara S. Durrant, Christopher W. Tubbs
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.596517

Fungal Communities on Standing Litter Are Structured by Moisture Type and Constrain Decomposition in a Hyper-Arid Grassland
Cited by: 11
Author(s): Jim Logan, Kathryn M. Jacobson, Peter J. Jacobson, Sarah E. Evans
Software Mentions: 5
Published: over 3 years ago

10.3389/fcimb.2018.00301

Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies
Cited by: 105
Author(s): Zheng Wang, Christine P. Zolnik, Yunping Qiu, Mykhaylo Usyk, Tao Wang, Howard D. Strickler, Carmen R. Isasi, Robert C. Kaplan, Irwin J. Kurland, Qibin Qi, Robert D. Burk
Software Mentions: 5
Published: about 6 years ago

10.1080/19490976.2020.1752605

Metagenomics reveals impact of geography and acute diarrheal disease on the Central Indian human gut microbiome
Cited by: 20
Author(s): Tanya Monaghan, Tim J. Sloan, Stephen R. Stockdale, Adam Blanchard, Richard D. Emes, Mark H. Wilcox, Rima Biswas, Rupam Nashine, Sonali Manke, Jinal Gandhi, Pratishtha Jain, Shrejal Bhotmange, Shrikant Ambalkar, Ashish Satav, Lorraine A. Draper, Colin Hill, Rajpal S. Kashyap
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2021.616730

Antarctic Water Tracks: Microbial Community Responses to Variation in Soil Moisture, pH, and Salinity
Cited by: 10
Author(s): Scott F. George, Noah Fierer, J. S. Levy, Byron J. Adams
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.4518

Ecological patterns in the skin microbiota of frogs from tropical Australia
Cited by: 15
Author(s): Keith A. Christian, Chava L. Weitzman, Alea Rose, Mirjam Kaestli, Karen S. Gibb
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.6219

Keeping it cool: Soil sample cold pack storage and DNA shipment up to 1 month does not impact metabarcoding results
Cited by: 17
Author(s): Camille S. Delavaux, James D. Bever, Erin M. Karppinen, Luke D. Bainard
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2019.01519

Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests
Cited by: 57
Author(s): Amélie Dukunde, Dominik Schneider, M. Schmidt, Edzo Veldkamp, Rolf Daniel
Software Mentions: 5
Published: over 5 years ago

10.1002/lno.10967

Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs
Cited by: 64
Author(s): Dina M. Leech, Amina I. Pollard, Stephanie Labou, Stephanie E. Hampton
Software Mentions: 5
Published: over 6 years ago

10.3390/life11030246

Postoperative Complications Are Associated with Long-Term Changes in the Gut Microbiota Following Colorectal Cancer Surgery
Cited by: 7
Author(s): Felix C. F. Schmitt, Martin Schneider, William Mathejczyk, Markus A. Weigand, Jane C. Figueiredo, Christopher I. Li, David Shibata, Erin M. Siegel, Adetunji T. Toriola, Cornelia M. Ulrich, Alexis Ulrich, Sébastien Boutin, Biljana Gigic
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-021-04106-7

EzMAP: Easy Microbiome Analysis Platform
Cited by: 0
Author(s): Gnanendra Shanmugam, Song Hee Lee, Junhyun Jeon
Software Mentions: 5
Published: over 3 years ago

10.1186/s13068-016-0652-5

Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion
Cited by: 56
Author(s): Jo De Vrieze, Leticia Regueiro, Ruben Props, Ramiro Vílchez-Vargas, Ruy Jáuregui, Dietmar H. Pieper, Juan M. Lema, Marta Carballa
Software Mentions: 5
Published: about 8 years ago

10.1093/gigascience/giaa043

Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle
Cited by: 27
Author(s): Suk-Kyung Lim, Dong‐Jun Kim, Dong Chan Moon, Youna Cho, Mina Rho
Software Mentions: 5
Published: over 4 years ago

10.1111/gcb.15118

Climate change causes critical transitions and irreversible alterations of mountain forests
Cited by: 91
Author(s): Katharina Albrich, Werner Rammer, Rupert Seidl
Software Mentions: 5
Published: over 4 years ago

10.1016/j.ebiom.2021.103538

Airway microbial communities, smoking and asthma in a general population sample
Cited by: 21
Author(s): Elena Turek, Michael J. Cox, Michael Hunter, Jennie Hui, Phillip James, Saffron A.G. Willis‐Owen, Leah Cuthbertson, Alan James, A.W. Musk, Miriam F. Moffatt, William Cookson
Software Mentions: 5
Published: about 3 years ago

10.1016/j.gpb.2018.04.008

Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake
Cited by: 25
Author(s): Maozhen Han, Melissa Dsouza, Chunyu Zhou, Hongjun Li, Junqian Zhang, Chaoyun Chen, Qi Yao, Chunrong Zhong, Hao Zhou, Jack A. Gilbert, Zhi Wen, Kang Ning
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0216758

An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa
Cited by: 20
Author(s): Karen Jordaan, A. Comeau, Damase P. Khasa, Cornelius Carlos Bezuidenhout
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-021-02463-3

Deterministic transition of enterotypes shapes the infant gut microbiome at an early age
Cited by: 50
Author(s): Liwen Xiao, Jinfeng Wang, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0182342

Community- and government-managed marine protected areas increase fish size, biomass and potential value
Cited by: 23
Author(s): Angelica Chirico, Timothy R. McClanahan, Johan Eklöf
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2016.00565

Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology
Cited by: 59
Author(s): Jane Debode, Caroline De Tender, Saman Soltaninejad, Cinzia Van Malderghem, Annelies Haegeman, Inge Van der Linden, Bart Cottyn, Marc Heyndrickx, Martine Maes
Software Mentions: 5
Published: over 8 years ago

10.3390/microorganisms9040719

Sedimentary Ancient DNA (sedaDNA) Reveals Fungal Diversity and Environmental Drivers of Community Changes throughout the Holocene in the Present Boreal Lake Lielais Svētiņu (Eastern Latvia)
Cited by: 13
Author(s): Liisi Talas, Normunds Stivriņš, Siim Veski, Leho Tedersoo, Veljo Kisand
Software Mentions: 5
Published: over 3 years ago

10.1186/s40168-017-0292-4

Whole metagenome profiles of particulates collected from the International Space Station
Cited by: 50
Author(s): Nicholas A. Be, Aram Avila-Herrera, Jonathan Allen, Nitin Kumar Singh, Aleksandra Checinska Sielaff, Crystal Jaing, Kasthuri Venkateswaran
Software Mentions: 5
Published: over 7 years ago

10.1093/bioinformatics/btw311

PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances
Cited by: 94
Author(s): Zheng-Zheng Tang, Guanhua Chen, Alexander V. Alekseyenko
Software Mentions: 5
Published: over 8 years ago

10.1186/s13059-021-02401-3

Detection of cell-free microbial DNA using a contaminant-controlled analysis framework
Cited by: 18
Author(s): Enrique Zozaya‐Valdés, Stephen Q. Wong, Jeanette Raleigh, Athena Hatzimihalis, Sarah Ftouni, Anthony T. Papenfuss, Shahneen Sandhu, Mark A. Dawson, Sarah‐Jane Dawson
Software Mentions: 5
Published: over 3 years ago

10.3390/d12060245

Nourished, Exposed Beaches Exhibit Altered Sediment Structure and Meiofaunal Communities
Cited by: 8
Author(s): Stephen R. Fegley, Julian P. Smith, Douglas E. Johnson, Amelia U. Schirmer, Jeremiah Daniel JonesBoggs, Austin Edmonds, Joseph Bursey
Software Mentions: 5
Published: over 4 years ago

10.1186/s42523-020-00040-w

The microbiome of captive hamadryas baboons
Cited by: 6
Author(s): Xuanji Li, Urvish Trivedi, Asker Brejnrod, Gisle Vestergaard, Martin Steen Mortensen, Mads F. Bertelsen, Søren J. Sørensen
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0226253

DNA metabarcoding-based diet survey for the Eurasian otter (Lutra lutra): Development of a Eurasian otter-specific blocking oligonucleotide for 12S rRNA gene sequencing for vertebrates
Cited by: 16
Author(s): Priyanka Kumari, Ke Dong, Kyung-Yeon Eo, Woo-Shin Lee, Junko Kimura, Naomichi Yamamoto
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13071-016-1584-4

Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region
Cited by: 9
Author(s): Enrique González-Tortuero, Jakub Rusek, Inbar Maayan, Adam Petrusek, Lubomír Piálek, Stefan Laurent, Justyna Wolinska
Software Mentions: 5
Published: over 8 years ago

10.1128/AEM.00149-21

Hyperlocal Variation in Soil Iron and the Rhizosphere Bacterial Community Determines Dollar Spot Development in Amenity Turfgrass
Cited by: 1
Author(s): Ming-Yi Chou, Smita Shrestha, Renée A. Rioux, Paul L. Koch
Software Mentions: 5
Published: over 3 years ago

10.1128/AEM.02646-18

Changes in the Active, Dead, and Dormant Microbial Community Structure across a Pleistocene Permafrost Chronosequence
Cited by: 58
Author(s): Alexander Burkert, Thomas A. Douglas, Mark P. Waldrop, Rachel Mackelprang
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.653880

Interactions Between Tsetse Endosymbionts and Glossina pallidipes Salivary Gland Hypertrophy Virus in Glossina Hosts
Cited by: 4
Author(s): Güler Demirbaş-Uzel, Antonios A. Augustinos, Vangelis Doudoumis, Andrew G. Parker, George Tsiamis, Kostas Bourtzis, Adly M. M. Abd-Alla
Software Mentions: 5
Published: over 3 years ago

10.3897/mycokeys.39.28109

Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding
Cited by: 52
Author(s): Sten Anslan, R. Henrik Nilsson, Christian Wurzbacher, Petr Baldrián, Leho Tedersoo, Mohammad Bahram
Software Mentions: 5
Published: about 6 years ago

10.3389/fvets.2019.00260

A Microbiomic Analysis of a Pasture-Raised Broiler Flock Elucidates Foodborne Pathogen Ecology Along the Farm-To-Fork Continuum
Cited by: 16
Author(s): Michael J. Rothrock, Aude Locatelli, Kristina M. Feye, Andrew J Caudill, Jean Guard, Kelli L. Hiett, Steven C. Ricke
Software Mentions: 5
Published: over 5 years ago

10.1186/s13059-019-1831-z

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
Cited by: 83
Author(s): Robert C. Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Álvarez, Martha L. Daviglus, Neil Schneiderman, Gregory A. Talavera, Marc D. Gellman, Bharat Thyagarajan, Jee Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica Williams-Nguyen, Michael C. Wu, Kari E. North, Justin P. Shaffer, Christopher C. Sollecito, Qibin Qi, Carmen R. Isasi, Tao Wang, Rob Knight, Robert D. Burk
Software Mentions: 5
Published: about 5 years ago

10.1128/AEM.01229-20

Relationship between Rainfall, Fecal Pollution, Antimicrobial Resistance, and Microbial Diversity in an Urbanized Subtropical Bay
Cited by: 17
Author(s): Nicole C. Powers, Hailey R. Wallgren, Sandra Marbach, John Turner
Software Mentions: 5
Published: about 4 years ago

10.3389/fmicb.2020.01075

Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System
Cited by: 18
Author(s): Linta Reji, Bradley B. Tolar, Francisco P. Chávez, Christopher A. Francis
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0129323

Microclimatic Divergence in a Mediterranean Canyon Affects Richness, Composition, and Body Size in Saproxylic Beetle Assemblages
Cited by: 4
Author(s): Jörn Buse, Samuel Fassbender, Martin H. Entling, Tomáš Pavlı́ček
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0223691

The bacterial community in potato is recruited from soil and partly inherited across generations
Cited by: 31
Author(s): Franziska Buchholz, Livio Antonielli, Tanja Kostić, Angela Sessitsch, Birgit Mitter
Software Mentions: 5
Published: about 5 years ago

10.3389/fvets.2020.00255

Toward Antibiotic Stewardship: Route of Antibiotic Administration Impacts the Microbiota and Resistance Gene Diversity in Swine Feces
Cited by: 24
Author(s): Nicole Ricker, Julian Trachsel, Phillip Colgan, Jennifer Jones, Jinlyung Choi, Jaejin Lee, Johann F. Coetzee, Adina Howe, Susan L. Brockmeier, Crystal L. Loving, Heather K. Allen
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2020.01614

Replacing Barley and Soybean Meal With By-products, in a Pasture Based Diet, Alters Daily Methane Output and the Rumen Microbial Community in vitro Using the Rumen Simulation Technique (RUSITEC)
Cited by: 7
Author(s): Pamela M. Smith, Sinéad M. Waters, David A. Kenny, T. M. Boland, J. S. Heffernan, A. K. Kelly
Software Mentions: 5
Published: over 4 years ago

10.1186/s12890-016-0303-4

The bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus
Cited by: 6
Author(s): Marc A. Sze, Stella Xu, Janice M. Leung, Emily A. Vucic, Tawimas Shaipanich, Aida Moghadam, Marianne Harris, Silvia Guillemi, Sunita Sinha, Corey Nislow, Darra Murphy, Cameron Hague, Jonathon Leipsic, Stephen Lam, Wan L. Lam, Julio S. G. Montaner, Don D. Sin, S. F. Paul Man
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0223949

Megabenthic communities of the Ligurian deep continental shelf and shelf break (NW Mediterranean Sea)
Cited by: 35
Author(s): Francesco Enrichetti, Carlos Domínguez-Carrió, Margherita Toma, Giorgio Bavestrello, Federico Betti, Simonepietro Canese, Marzia Bo
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.6477

Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: over 4 years ago

10.1186/s12903-021-01439-w

Microbiological findings in early and late implant loss: an observational clinical case-controlled study
Cited by: 12
Author(s): Michael Korsch, Silke‐Mareike Marten, Dominic A. Stoll, Christopher Prechtl, Andreas Dötsch
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0252593

Quantifying impacts of stony coral tissue loss disease on corals in Southeast Florida through surveys and 3D photogrammetry
Cited by: 11
Author(s): Ian R. Combs, Michael S. Studivan, Ryan J. Eckert, Joshua D. Voss
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2016.02143

Linking Peripartal Dynamics of Ruminal Microbiota to Dietary Changes and Production Parameters
Cited by: 37
Author(s): Hooman Derakhshani, Hein Min Tun, F.C. Cardoso, J.C. Plaizier, Ehsan Khafipour, Juan J. Loor
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-34619-w

A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon
Cited by: 28
Author(s): Aline B. M. Vaz, Paula Luize Camargos Fonseca, Fernanda Badotti, Demetra Skaltsas, Luiz Marcelo Ribeiro Tomé, Allefi C. Silva, Mayara C. Cunha, Marco A. Soares, Vera Lúcia dos Santos, Guilherme Oliveira, Priscilla Chaverri, Aristóteles Goés-Neto
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2021.660749

Positive Effects of Crop Diversity on Productivity Driven by Changes in Soil Microbial Composition
Cited by: 45
Author(s): Laura Stefan, Martin Hartmann, Nadine Engbersen, Johan Six, Christian Schöb
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2021.661410

Short-Term Effect in Soil Microbial Community of Two Strategies of Recovering Degraded Area in Brazilian Savanna: A Pilot Case Study
Cited by: 1
Author(s): Priscila Jane Romano Gonçalves Selari, Luiz Ricardo Olchanheski, Almir José Ferreira, Tiago do Prado Paim, Guido Calgaro, Flávio Lopes Claudio, Estênio Moreira Alves, Darliane de Castro Santos, Welington Luiz Araújo, Fabiano Guimarães Silva
Software Mentions: 5
Published: over 3 years ago

10.3389/fvets.2021.654927

Association of Broiler Litter Microbiome Composition and Campylobacter Isolation
Cited by: 7
Author(s): Robert Valeris-Chacín, Maria Pieters, Hyun Seok Hwang, Timothy J. Johnson, Randall S. Singer
Software Mentions: 5
Published: over 3 years ago

10.1186/s40478-020-00988-5

Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer’s disease
Cited by: 64
Author(s): Charlotte Mezö, Nikolaos Dokalis, Omar Mossad, Ori Staszewski, Jana Neuber, Bahtiyar Yılmaz, Daniel Schnepf, Mercedes Gomez de Agüero, Stephanie C. Ganal‐Vonarburg, Andrew J. Macpherson, Melanie Meyer‐Luehmann, Peter Staeheli, Thomas Blank, Marco Prinz, Daniel Erny
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2019.02902

Exploring Soil Factors Determining Composition and Structure of the Bacterial Communities in Saline-Alkali Soils of Songnen Plain
Cited by: 42
Author(s): Shuang Wang, Lei Sun, Ning Ling, Chen Zhu, Fengqin Chi, Weiqun Li, Xiaoyu Hao, Wu Zhang, Jingyang Bian, Lei Chen, Dan Wei
Software Mentions: 5
Published: almost 5 years ago

10.1053/j.gastro.2020.08.007

Alterations in Intestinal Microbiota of Children With Celiac Disease at the Time of Diagnosis and on a Gluten-free Diet
Cited by: 44
Author(s): Konstantina Zafeiropoulou, Ben Nichols, Mary Mackinder, Olga Biskou, Eleni Rizou, Antonia Karanikolou, Caspar Clark, Evan G. Buchanan, Tracey Cardigan, H. J. Duncan, David Wands, Julie A. Russell, Richard Hansen, Richard K. Russell, Paraic McGrogan, Christine Edwards, Umer Zeeshan Ijaz, Konstantinos Gerasimidis
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmicb.2019.00256

Soil Macroinvertebrate Presence Alters Microbial Community Composition and Activity in the Rhizosphere
Cited by: 25
Author(s): Natalie Bray, Jenny Kao‐Kniffin, Serita D. Frey, Timothy J. Fahey, Kyle Wickings
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0194336

Animal taxa contrast in their scale-dependent responses to land use change in rural Africa
Cited by: 11
Author(s): Stefan H. Foord, Lourens H. Swanepoel, Steven W. Evans, Colin S. Schoeman, Barend Erasmus, M. Corrie Schoeman, Mark Keith, Alain Smith, Evans V. Mauda, Naudene Maree, Nkhumeleni Lesly Nembudani, A.S. Dippenaar-Schoeman, Thinandavha C. Munyai, Peter J. Taylor
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2017.01120

The Arbuscular Mycorrhizal Fungus Funneliformis mosseae Alters Bacterial Communities in Subtropical Forest Soils during Litter Decomposition
Cited by: 31
Author(s): Heng Gui, Witoon Purahong, Kevin D. Hyde, Jianchu Xu, Peter E. Mortimer
Software Mentions: 5
Published: over 7 years ago

10.1111/1751-7915.13485

Faecal microbiota and functional capacity associated with weaning weight in meat rabbits
Cited by: 19
Author(s): Shouguo Fang, Xuan Chen, Liwen Zhou, Chongchong Wang, Qiaohui Chen, Ruiyi Lin, Tianfang Xiao, Qianfu Gan
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2021.683685

Characterization of Supragingival Plaque and Oral Swab Microbiomes in Children With Severe Early Childhood Caries
Cited by: 13
Author(s): Vivianne Cruz de Jesus, Mohd Wasif Khan, Betty-Anne Mittermuller, Kangmin Duan, Pingzhao Hu, Robert J Schroth, Prashen Chelikani
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.02066

Use of RNA and DNA to Identify Mechanisms of Bacterial Community Homogenization
Cited by: 16
Author(s): Kyle Meyer, Ian A. B. Petersen, Elie Tobi, Lisa Körte, Brendan J. M. Bohannan
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2019.00481

Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype
Cited by: 40
Author(s): Gregory Bonito, Gian Maria Niccolò Benucci, Khalid Hameed, Deborah Weighill, Piet Jones, Ko‐Hsuan Chen, Daniel Jacobson, Christopher W. Schadt, Rytas Vilgalys
Software Mentions: 5
Published: over 5 years ago

10.1186/s42523-019-0017-z

Development of the duodenal, ileal, jejunal and caecal microbiota in chickens
Cited by: 36
Author(s): Laura Glendinning, Kellie Watson, Michael Watson
Software Mentions: 5
Published: about 5 years ago

10.3390/nu12092570

Diet, Perceived Intestinal Well-Being and Compositions of Fecal Microbiota and Short Chain Fatty Acids in Oat-Using Subjects with Celiac Disease or Gluten Sensitivity
Cited by: 8
Author(s): Lotta Nylund, Salla Hakkola, Leo Lahti, Seppo Salminen, Marko Kalliomäki, Baoru Yang, Kaisa M. Linderborg
Software Mentions: 5
Published: about 4 years ago

10.1007/s00248-019-01435-2

The Bacterial Flora Associated with the Polyphagous Aphid Aphis gossypii Glover (Hemiptera: Aphididae) Is Strongly Affected by Host Plants
Cited by: 26
Author(s): Shifen Xu, Li‐Yun Jiang, Ge‐Xia Qiao, Jing Chen
Software Mentions: 5
Published: almost 5 years ago

10.3390/nu13093289

Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area
Cited by: 13
Author(s): Manon Balvers, Mélanie Deschasaux, Bert‐Jan H. van den Born, Koos Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 5
Published: about 3 years ago

10.1186/s40168-021-01001-4

The bacterial communities of Alaskan mosses and their contributions to N2-fixation
Cited by: 26
Author(s): Hannah Holland‐Moritz, Julia Stuart, Lily R. Lewis, Samantha N. Miller, Michelle C. Mack, José Miguel Ponciano, Stuart F. McDaniel, Noah Fierer
Software Mentions: 5
Published: almost 4 years ago

10.1007/s00248-019-01412-9

Variation in the Microbiota Associated with Daphnia magna Across Genotypes, Populations, and Temperature
Cited by: 32
Author(s): Jonas Frankel-Bricker, Michael Song, Maia J. Benner, Sarah Schaack
Software Mentions: 5
Published: over 5 years ago

10.1038/s41396-020-0683-6

Drought and plant litter chemistry alter microbial gene expression and metabolite production
Cited by: 61
Author(s): Ashish Malik, Tami L. Swenson, Claudia Weihe, Eric W. Morrison, Jennifer B. H. Martiny, Eoin L. Brodie, Trent Northen, Steven D. Allison
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2021.617280

Electron Acceptor Availability Shapes Anaerobically Methane Oxidizing Archaea (ANME) Communities in South Georgia Sediments
Cited by: 9
Author(s): Annika Schnakenberg, David A. Aromokeye, Ajinkya Kulkarni, Lisa Maier, Lea C Wunder, Tim Richter-Heitmann, Thomas Pape, Petra Pop Ristova, Solveig I Bühring, Ingrid Dohrmann, Gerhard Bohrmann, Sabine Kasten, Michael W. Friedrich
Software Mentions: 5
Published: over 3 years ago

10.1186/s12866-020-01795-7

Optimizing 16S rRNA gene profile analysis from low biomass nasopharyngeal and induced sputum specimens
Cited by: 15
Author(s): Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Kilaza Samson Mwaikono, Elloise du Toit, Heather J. Zar, Mark P. Nicol
Software Mentions: 5
Published: over 4 years ago

10.1038/s41396-019-0570-1

Divergent symbiont communities determine the physiology and nutrition of a reef coral across a light-availability gradient
Cited by: 46
Author(s): Christopher B. Wall, Mario Kaluhiokalani, Brian N. Popp, Megan J. Donahue, Ruth D. Gates
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0248485

16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
Cited by: 21
Author(s): Edith M. Muwawa, Chinedu Christopher Obieze, Huxley Mae Makonde, Joyce Jefwa, James H. P. Kahindi, Damase Khasa
Software Mentions: 5
Published: over 3 years ago

10.1186/s40168-021-01134-6

SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
Cited by: 4
Author(s): Raminta Kazlauskaite, Bachar Cheaib, Chloe Heys, Umer Ijaz, Stephanie Connelly, William T. Sloan, Julie Russel, Laura Rubio, John Sweetman, Alex Kitts, Philip McGinnity, Philip Lyons, Martin S. Llewellyn
Software Mentions: 5
Published: about 3 years ago

10.1186/s42523-020-00038-4

Gut eukaryotic communities in pigs: diversity, composition and host genetics contribution
Cited by: 23
Author(s): Yuliaxis Ramayo-Caldas, Francesc X. Prenafeta-Boldú, Laura M. Zingaretti, Olga González‐Rodríguez, Antoni Dalmau, Raquel Quintanilla, María Ballester
Software Mentions: 5
Published: over 4 years ago

10.1186/s12866-021-02099-0

The regional diversity of gut microbiome along the GI tract of male C57BL/6 mice
Cited by: 41
Author(s): Enkhchimeg Lkhagva, Hea-Jong Chung, Jinny Hong, W.H. Wilson Tang, Lee S, Seong‐Tshool Hong, Seungkoo Lee
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41396-020-00735-7

Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought
Cited by: 35
Author(s): Joana Séneca, Petra Pjevac, Alberto Canarini, Craig W. Herbold, Christos Zioutis, Marlies Dietrich, Eva Simon, Judith Prommer, Michael Bahn, E. M. Pötsch, Michael Wagner, Wolfgang Wanek, Andreas Richter
Software Mentions: 5
Published: over 4 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292