cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-66364-4

Rapeseed-based diet modulates the imputed functions of gut microbiome in growing-finishing pigs
Cited by: 11
Author(s): Özgün Candan Onarman Umu, Liv Torunn Mydland, Margareth Øverland, Charles McL. Press, Henning Sørum
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66658-7

A longitudinal study of the development of the saliva microbiome in infants 2 days to 5 years compared to the microbiome in adolescents
Cited by: 34
Author(s): Pernilla Lif Holgerson, Anders Esberg, Andreas Sjödin, Christina West, Ingegerd Johansson
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66654-x

Taxonomic diversity of sputum microbiome in lung cancer patients and its relationship with chromosomal aberrations in blood lymphocytes
Cited by: 14
Author(s): В. Г. Дружинин, Liudmila Matskova, П. С. Деменков, Е. Д. Баранова, Valentin P. Volobaev, В. И. Минина, Svetlana V. Apalko, М. А. Чурина, Sofya A. Romanyuk, С. Г. Щербак, В А Иванов, А. В. Ларионов
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66655-w

Chemical signal is in the blend: bases of plant-pollinator encounter in a highly specialized interaction
Cited by: 28
Author(s): Magali Proffit, Benoît Lapeyre, Bruno Buatois, Xiaoxia Deng, Pierre Arnal, Flora Gouzerh, Davíd Carrasco, Martine Hossaert‐McKey
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-67858-x

Ontogenetic trophic segregation between two threatened smooth-hound sharks in the Central Mediterranean Sea
Cited by: 12
Author(s): Manfredi Di Lorenzo, Salvatrice Vizzini, Geraldina Signa, Cristina Andolina, Gabriele Boscolo Palo, Michele Gristina, Carlotta Mazzoldi, Francesco Colloca
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68100-4

Dynamics of the lung microbiome in intensive care patients with chronic obstructive pulmonary disease and community-acquired pneumonia
Cited by: 9
Author(s): Wei-Chang Huang, Ming‐Feng Wu, Chen-Cheng Huang, Sin-Yin Liu, Hui-Chen Chen, Yih-Yuan Chen, Jeng-Yuan Hsu, Chieh-Chen Huang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-67962-y

More severe disturbance regimes drive the shift of a kelp forest to a sea urchin barren in south-eastern Australia
Cited by: 6
Author(s): Paul E. Carnell, Michael J. Keough
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68952-w

The closed eye harbours a unique microbiome in dry eye disease
Cited by: 39
Author(s): Kent A. Willis, Cameron Postnikoff, Amelia Freeman, Gabriel Rezonzew, Kelly K. Nichols, Amit Gaggar, Charitharth Vivek Lal
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68369-5

Fatty acid analyses provide novel insights on hippo defecation and consequences for aquatic food webs
Cited by: 5
Author(s): Jessica Dawson, Deena Pillay, Renzo Perissinotto, Nicole B. Richoux
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-69112-w

17β-Estradiol supplementation changes gut microbiota diversity in intact and colorectal cancer-induced ICR male mice
Cited by: 32
Author(s): Chin Hee Song, Na Young Kim, Ryoung Hee Nam, Soo In Choi, Ha Na Lee, Young Joon Surh
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-69241-2

A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota
Cited by: 20
Author(s): Juhani Aakko, Sami Pietilä, Raine Toivonen, Anne Rokka, Kati Mokkala, Kirsi Laitinen, Laura L. Elo, Arno Hänninen
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-69562-2

Distribution patterns, carbon sources and niche partitioning in cave shrimps (Atyidae: Typhlatya)
Cited by: 18
Author(s): Efraín M. Chávez-Solís, C. Solı́s, Nuno Simões, Maité Mascaró
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-70055-5

Asynchrony among insect pollinator groups and flowering plants with elevation
Cited by: 9
Author(s): Opeyemi Adedoja, Temitope Kehinde, Michael J. Samways
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-70745-0

The Anopheles coluzzii microbiome and its interaction with the intracellular parasite Wolbachia
Cited by: 21
Author(s): Timothy J. Straub, W. Robert Shaw, Perrine Marcenac, Simon P. Sawadogo, Roch K. Dabiré, Abdoulaye Diabaté, Flaminia Catteruccia, Daniel E. Neafsey
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-70765-w

C57BL/6J substrain differences in response to high-fat diet intervention
Cited by: 32
Author(s): Majken Siersbæk, Nicholas Ditzel, Eva Kildall Hejbøl, Stine M. Præstholm, Lasse K. Markussen, Fabio Avolio, Lingzi Li, Lasse Lehtonen, Axel Kornerup Hansen, Henrik Daa Schrøder, Łukasz Krych, Susanne Mandrup, Louise Langhorn, Peter Bollen, Lars Grøntved
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71371-6

Altered gut microbiota correlated with systemic inflammation in children with Kawasaki disease
Cited by: 20
Author(s): Jie Chen, Yanghua Yue, Lu Wang, Zixin Deng, Yong-Hua Yuan, Ming‐Hui Zhao, Zijie Yuan, Changlian Tan, Youde Cao
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71633-3

IRF2 maintains the stemness of colonic stem cells by limiting physiological stress from interferon
Cited by: 12
Author(s): Kana Minamide, Taku Sato, Yusuke Nakanishi, Hiroshi Ohno, Tamotsu Kato, Jumpei Asano, Toshiaki Ohteki
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71782-5

Micro-climatic effects on plant phenolics at the community level in a Mediterranean savanna
Cited by: 3
Author(s): Xoaquín Moreira, Luis Abdala‐Roberts, Maria Dolores Hidalgo-Galvez, Carla Vázquez‐González, Ignacio Manuel Pérez-Ramos
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71603-9

Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Cited by: 12
Author(s): Yacine Ben Chehida, Julie Thumloup, Cassie A. Schumacher, Timothy T. Harkins, Àlex Aguilar, Asunción Borrell, Marisa Ferreira, Lorenzo Rojas‐Bracho, Kelly M. Robertson, Barbara L. Taylor, Gísli A. Víkingsson, Arthur Weyna, Jonathan Romiguier, Phillip A. Morin, Michaël C. Fontaine
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-71791-4

Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination
Cited by: 5
Author(s): Susanna K. Tan, Andrea Granados, Jérôme Bouquet, Yana Emmy Hoy-Schulz, Lauri Green, Scot Federman, Doug Stryke, Thomas D. Haggerty, Catherine Ley, Ming Te Yeh, Kaniz Jannat, Yvonne Maldonado, Raul Andino, Julie Parsonnet, Charles Y. Chiu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-72653-9

Limited effect of radial oxygen loss on ammonia oxidizers in Typha angustifolia root hairs
Cited by: 1
Author(s): Elena Hernández‐del Amo, Iva Dolinová, Gal la Ramis-Jorba, Frédéric Gich, Lluís Bañeras
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-72635-x

Comparison of gut microbiota in exclusively breast-fed and formula-fed babies: a study of 91 term infants
Cited by: 107
Author(s): Jingran Ma, Zhenghong Li, Wenjuan Zhang, Chunli Zhang, Yuheng Zhang, Hua Mao, Na Zhuo, Hongyun Wang, Lin Wang, Dan Wu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-72816-8

Effect of very low-protein diets supplemented with branched-chain amino acids on energy balance, plasma metabolomics and fecal microbiome of pigs
Cited by: 32
Author(s): Shelby Spring, Hasitha Premathilake, Chloe Bradway, Cedrick N Shili, Udaya DeSilva, Scott L. Carter, Adel Pezeshki
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-73293-9

Seasonal dynamics of lotic bacterial communities assessed by 16S rRNA gene amplicon deep sequencing
Cited by: 11
Author(s): Lisa Paruch, Adam M. Paruch, Hans Geir Eiken, Monica Skogen, Roald Sørheim
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-73649-1

Fruit host-dependent fungal communities in the microbiome of wild Queensland fruit fly larvae
Cited by: 7
Author(s): Rajib Majumder, Brodie Sutcliffe, Phillip W. Taylor, Toni A. Chapman
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-73702-z

Diel vertical migration into anoxic and high-pCO2 waters: acoustic and net-based krill observations in the Humboldt Current
Cited by: 11
Author(s): Ramiro Riquelme‐Bugueño, Iván Pérez-Santos, Nicolás Alegría, Cristian A. Vargas, Mauricio A. Urbina, Rubén Escribano
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-74379-0

Prebiotic effects of yeast mannan, which selectively promotes Bacteroides thetaiotaomicron and Bacteroides ovatus in a human colonic microbiota model
Cited by: 30
Author(s): Shunsuke Oba, Tadahiro Sunagawa, Reiko Tanihiro, Kyoko Awashima, Hiroshi Sugiyama, Tetsuji Odani, Yasunori Nakamura, Akihiko Kondo, Daisuke Sasaki, Kengo Sasaki
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-74670-0

Differential processing of dissolved and particulate organic matter by deep-sea sponges and their microbial symbionts
Cited by: 26
Author(s): Martijn C. Bart, A. de Kluijver, Sean Hoetjes, Samira Absalah, Benjamin Mueller, Ellen Kenchington, Hans Tore Rapp, Jasper M. de Goeij
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-74586-9

Microbial community dynamics in phyto-thermotherapy baths viewed through next generation sequencing and metabolomics approach
Cited by: 4
Author(s): Elena Franciosi, Luca Narduzzi, Antonella Paradiso, Silvia Carlin, Kieran Tuohy, Alberto Beretta, Fulvio Mattivi
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75117-2

Trophic downgrading reduces spatial variability on rocky reefs
Cited by: 7
Author(s): Matthew S. Edwards, Brenda Konar
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75229-9

Increased intestinal permeability and gut dysbiosis in the R6/2 mouse model of Huntington’s disease
Cited by: 49
Author(s): Tiberiu Loredan Stan, Rana Soylu-Kucharz, Stephen Burleigh, Olena Prykhodko, Ling Cao, Naomi Franke, Marie Sjögren, Caroline Haikal, Frida Fåk Hållenius, Maria Björkqvist
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75370-5

Interannual variability in the lipid and fatty acid profiles of east Australia-migrating humpback whales (Megaptera novaeangliae) across a 10-year timeline
Cited by: 15
Author(s): Jasmin Groß, Patti Virtue, Peter D. Nichols, Pascale Eisenmann, Courtney Waugh, Susan Bengtson Nash
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75026-4

Effects of long-lasting social isolation and re-socialization on cognitive performance and brain activity: a longitudinal study in Octodon degus
Cited by: 27
Author(s): Daniela Rivera, Carolina B. Lindsay, Carolina A. Oliva, Juan Francisco Codocedo, Francisco Bozinovic, Nibaldo C. Inestrosa
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75452-4

Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics
Cited by: 5
Author(s): Katie M. McGee, Teresita M. Porter, Michael Wright, Mehrdad Hajibabaei
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76188-x

Increase in temperature enriches heat tolerant taxa in Aedes aegypti midguts
Cited by: 20
Author(s): Gorreti Maria Onyango, M. Sean Bialosuknia, Fred Payne, Nicholas Mathias, Alexander T. Ciota, D. Laura Kramer
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76545-w

Pelvic bone morphometric analysis in the dugong (Dugong dugon)
Cited by: 2
Author(s): Korakot Nganvongpanit, Phaothep Cherdsukjai, Burin Boonsri, Kittisak Buddhachat, Patcharaporn Kaewmong, Kongkiat Kittiwattanawong
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76858-w

Seasonal patterns in stable isotope and fatty acid profiles of southern stingrays (Hypanus americana) at Stingray City Sandbar, Grand Cayman
Cited by: 3
Author(s): Lisa A. Hoopes, Tonya M. Clauss, Nicole E. Browning, Alexa J. Delaune, Bradley M. Wetherbee, Jessica C. Harvey, Guy Harvey
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76817-5

Impairment of microbial and meiofaunal ecosystem functions linked to algal forest loss
Cited by: 8
Author(s): Silvia Bianchelli, Roberto Danovaro
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02776-19

Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities
Cited by: 68
Author(s): Paul Carini, Manuel Delgado‐Baquerizo, Eve‐Lyn S. Hinckley, Hannah Holland‐Moritz, Tess E. Brewer, Garrett Rue, Caihong Vanderburgh, Diane M. McKnight, Noah Fierer
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02780-19

Gut Feelings Begin in Childhood: the Gut Metagenome Correlates with Early Environment, Caregiving, and Behavior
Cited by: 32
Author(s): Jessica Flannery, Keaton Stagaman, Adam R. Burns, Roxana J. Hickey, Leslie E. Roos, Ryan J. Giuliano, Philip A. Fisher, Thomas J. Sharpton
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02089-20

Biotic Interactions Are More Important than Propagule Pressure in Microbial Community Invasions
Cited by: 12
Author(s): Michaeline B. N. Albright, Sanna Sevanto, La Verne Gallegos‐Graves, John Dunbar
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.03456-20

SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia
Cited by: 21
Author(s): J.K. Everett, Pascha Hokama, Aoife M. Roche, Shantan Reddy, Young Sun Hwang, Lyanna R. Kessler, Abigail Glascock, Yize Li, Jillian N. Whelan, Susan R. Weiss, Scott Sherrill-Mix, Kevin D. McCormick, Samantha A. Whiteside, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Ronald G. Collman, Frederic D. Bushman
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01028-21

Dietary Fiber Hierarchical Specificity: the Missing Link for Predictable and Strong Shifts in Gut Bacterial Communities
Cited by: 29
Author(s): Thaísa Moro Cantu-Jungles, Nuseybe Bulut, Eponine Chambry, Andréa Caroline Ruthes, Marcello Iacomini, Ali Keshavarzian, Timothy A. Johnson, Bruce R. Hamaker
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00771-21

Obesity-Related Gut Microbiota Aggravates Alveolar Bone Destruction in Experimental Periodontitis through Elevation of Uric Acid
Cited by: 32
Author(s): Keisuke Sato, Kyoko Yamazaki, Tamotsu Kato, Yumiko Nakanishi, Takahiro Tsuzuno, Mai Yokoji-Takeuchi, Miki Yamada-Hara, Nobuaki Miura, Shujiro Okuda, Hiroshi Ohno, Kazuhisa Yamazaki
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00751-21

Host Species and Geography Differentiate Honeybee Gut Bacterial Communities by Changing the Relative Contribution of Community Assembly Processes
Cited by: 24
Author(s): Yuan Ge, Zhongwang Jing, Qingyun Diao, Ji‐Zheng He, Yongjun Liu
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00846-21

Tobacco Root Endophytic Arthrobacter Harbors Genomic Features Enabling the Catabolism of Host-Specific Plant Specialized Metabolites
Cited by: 11
Author(s): Tomohisa Shimasaki, Sachiko Masuda, Ruben Garrido‐Oter, Takashi Kawasaki, Yosuke Aoki, Arisa Shibata, Wataru Suda, Ken Shirasu, Kazufumi Yazaki, Ryohei Thomas Nakano, Akifumi Sugiyama
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00975-21

Dynamic Colonization of Microbes and Their Functions after Fecal Microbiota Transplantation for Inflammatory Bowel Disease
Cited by: 22
Author(s): Nathaniel D. Chu, Jessica W Crothers, Le T T Nguyen, Sean M. Kearney, Mark Smith, Zain Kassam, Cheryl Collins, Ramnik J. Xavier, Peter L. Moses, Eric J. Alm
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.00423-21

Poor Competitiveness of Bradyrhizobium in Pigeon Pea Root Colonization in Indian Soils
Cited by: 5
Author(s): Danteswari Chalasani, Anirban Basu, Sarma V. S. R. N. Pullabhotla, Beatriz Jorrín, Andrew L. Neal, Philip S. Poole, Appa Rao Podile, Andrzej Tkacz
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.01155-21

Ileal Bile Acid Transporter Inhibitor Improves Hepatic Steatosis by Ameliorating Gut Microbiota Dysbiosis in NAFLD Model Mice
Cited by: 12
Author(s): Masahiro Morimoto, Shinya Fukunishi, Takashi Nakano, Takaaki Ueno, Kazuhide Higuchi, Akira Asai
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSphere.00085-17

Bacterial Community Composition Associated with Pyrogenic Organic Matter (Biochar) Varies with Pyrolysis Temperature and Colonization Environment
Cited by: 44
Author(s): Zhongmin Dai, Albert Barberán, Yong Li, Philip C. Brookes, Jianming Xu
Software Mentions: 1
Published: over 9 years ago

10.1128/mSphere.00243-17

Butyrate Supplementation at High Concentrations Alters Enteric Bacterial Communities and Reduces Intestinal Inflammation in Mice Infected with Citrobacter rodentium
Cited by: 78
Author(s): Janelle A. Jiminez, Trina C. Uwiera, D. Wade Abbott, Richard R. E. Uwiera, G. Douglas Inglis
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSphere.00531-17

Reproductive System Symbiotic Bacteria Are Conserved between Two Distinct Populations of Euprymna scolopes from Oahu, Hawaii
Cited by: 11
Author(s): Allison H. Kerwin, Spencer V. Nyholm
Software Mentions: 1
Published: over 8 years ago

10.1128/mSphere.00219-18

Rectal and Naris Swabs: Practical and Informative Samples for Analyzing the Microbiota of Critically Ill Patients
Cited by: 10
Author(s): Saumya Bansal, Julie T. Nguyen, Aleksandra Leligdowicz, Yu Zhang, Kevin C. Kain, Daniel R. Ricciuto, Bryan Coburn
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphere.00148-18

Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units
Cited by: 137
Author(s): Sydney I. Glassman, Jennifer B. H. Martiny
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSphere.00358-19

Rectal Swabs from Critically Ill Patients Provide Discordant Representations of the Gut Microbiome Compared to Stool Samples
Cited by: 25
Author(s): Katherine Fair, D.G. Dunlap, Adam Fitch, Tatiana Bogdanovich, Barbara A. Methé, Alison Morris, Bryan J. McVerry, Georgios D. Kitsios
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphere.00763-19

Systematic Analysis of Impact of Sampling Regions and Storage Methods on Fecal Gut Microbiome and Metabolome Profiles
Cited by: 33
Author(s): Yongsheng Liang, Tianyu Dong, Minjian Chen, Lianping He, Tingzhang Wang, Xingyin Liu, Hang Chang, Jian‐Hua Mao, Bo Hang, Antoine M. Snijders, Yankai Xia
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00791-19

Bifidobacterium longum R0175 Protects Rats against <scp>d</scp> -Galactosamine-Induced Acute Liver Failure
Cited by: 22
Author(s): Kaicen Wang, Longxian Lv, Yan Ren, Qiangqiang Wang, Huiyong Jiang, Wenshuai Wu, Yating Li, Jianzhong Ye, Jingjing Wu, Liya Yang, Xiaoyuan Bian, Xianwan Jiang, Yao Lu, Jiao-Jiao Xie, Jian Shen
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00306-20

Bacterial Community Structure Dynamics in Meloidogyne incognita -Infected Roots and Its Role in Worm-Microbiome Interactions
Cited by: 10
Author(s): Timur Yergaliyev, Rivka Alexander-Shani, Hana Dimerets, Shimon Pivonia, David Bird, Shimon Rachmilevitch, Amir Szitenberg
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.00314-20

Distinct Fecal and Plasma Metabolites in Children with Autism Spectrum Disorders and Their Modulation after Microbiota Transfer Therapy
Cited by: 58
Author(s): Dae Wook Kang, James B. Adams, Troy Vargason, Marina Santiago, Juergen Hahn, Rosa Krajmalnik‐Brown
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.00084-21

Matrix Effects on the Delivery Efficacy of Bifidobacterium animalis subsp. lactis BB-12 on Fecal Microbiota, Gut Transit Time, and Short-Chain Fatty Acids in Healthy Young Adults
Cited by: 7
Author(s): Zhaoyong Ba, Yujin Lee, Huicui Meng, Penny M. Kris-Etherton, Connie J. Rogers, Zachery T. Lewis, David A. Mills, Emily J. Furumoto, M. Laura Rolon, Jennifer Fleming, Robert F. Roberts
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSphere.00283-21

Gut Microbiome and Serum Metabolome Alterations Associated with Isolated Dystonia
Cited by: 7
Author(s): Lingyan Ma, Jing Keng, Min Cheng, Hua Pan, Bo Feng, Yongfeng Hu, Tao Feng, Fan Yang
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSphere.00130-21

Local Network Properties of Soil and Rhizosphere Microbial Communities in Potato Plantations Treated with a Biological Product Are Important Predictors of Crop Yield
Cited by: 2
Author(s): Nabeel Imam, Ignacio Belda, Beatriz García-Jiménez, Adrian J. Duehl, James R. Doroghazi, Daniel E. Almonacid, Varghese P. Thomas, Alberto Acedo
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSystems.00117-16

Microbial Communities Are Well Adapted to Disturbances in Energy Input
Cited by: 26
Author(s): Nuria Fernández-González, J. A. Huber, Joseph J. Vallino
Software Mentions: 1
Published: almost 10 years ago

10.1128/mSystems.00093-17

Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites
Cited by: 62
Author(s): Lavanya Reddivari, D. N. Rao Veeramachaneni, William A. Walters, Catherine Lozupone, Jennifer S. Palmer, M. K. Kurundu Hewage, Rohil S. Bhatnagar, Amir Almasi‐Hashiani, Mary J. Kennett, Rob Knight, Jairam Vanamala
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSystems.00140-17

Development of the Human Mycobiome over the First Month of Life and across Body Sites
Cited by: 125
Author(s): Tonya Ward, Maria Gloria Domínguez-Bello, Tim Heisel, Gabriel A. Al‐Ghalith, Dan Knights, Cheryl A. Gale
Software Mentions: 1
Published: about 8 years ago

10.1128/mSystems.00021-18

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
Cited by: 329
Author(s): Stefan Janssen, Daniel McDonald, Antonio González, José A. Navas-Molina, Lingjing Jiang, Zhenjiang Zech Xu, Kevin Winker, Deborah M. Kado, Eric S. Orwoll, Mark J. Manary, Siavash Mirarab, Rob Knight
Software Mentions: 1
Published: about 8 years ago

10.1128/mSystems.00177-18

Influence of Feeding Type and Nosema ceranae Infection on the Gut Microbiota of Apis cerana Workers
Cited by: 29
Author(s): Shao Kang Huang, Kun T. Ye, Wei Huang, Bi H. Ying, Xin Su, Li Lin, Jiang H. Li, Yan P. Chen, Ji L. Li, Xiulong Bao, Jian Hu
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSystems.00281-18

Pangenomic Approach To Understanding Microbial Adaptations within a Model Built Environment, the International Space Station, Relative to Human Hosts and Soil
Cited by: 29
Author(s): Ryan A. Blaustein, Alexander McFarland, Sarah Ben Maamar, Alberto M. López, Sarah L. Castro-Wallace, Erica M. Hartmann
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00208-18

Rare Taxa Exhibit Disproportionate Cell-Level Metabolic Activity in Enriched Anaerobic Digestion Microbial Communities
Cited by: 19
Author(s): Yangyang Jia, Marcus H. Y. Leung, Xinzhao Tong, David E. Wilkins, Patrick K. H. Lee
Software Mentions: 1
Published: over 7 years ago

10.3390/nu11092193

Sugar Beet Pectin Supplementation Did Not Alter Profiles of Fecal Microbiota and Exhaled Breath in Healthy Young Adults and Healthy Elderly
Cited by: 31
Author(s): Ran An, Ellen Wilms, Agnieszka Smolinska, Gerben D. A. Hermes, Ad Masclee, Paul de Vos, Henk A. Schols, Frederik J. van Schooten, Hauke Smidt, Daisy Jonkers, Erwin G. Zoetendal, Freddy J. Troost
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu12030634

Microbiological and Immunological Markers in Milk and Infant Feces for Common Gastrointestinal Disorders: A Pilot Study
Cited by: 17
Author(s): Marina Aparicio, Claudio Alba, Juan M. Rodríguez, Leónides Fernández
Software Mentions: 1
Published: over 6 years ago

10.3390/nu11092128

New and Preliminary Evidence on Altered Oral and Gut Microbiota in Individuals with Autism Spectrum Disorder (ASD): Implications for ASD Diagnosis and Subtyping Based on Microbial Biomarkers
Cited by: 82
Author(s): Xuejun Kong, Jun Li, Murat Çetinbaş, Ruslan I. Sadreyev, Madelyn Koh, Hui Yu Huang, Adetaye Adeseye, Puhan He, Junli Zhu, H. Russell, Clara Hobbie, Kevi Liu, Andrew B. Onderdonk
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu13051602

Administration of Bifidobacterium breve Improves the Brain Function of Aβ1-42-Treated Mice via the Modulation of the Gut Microbiome
Cited by: 34
Author(s): Guangsu Zhu, Jianxin Zhao, Hao Zhang, Gang Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10091298

Astaxanthin Prevents Alcoholic Fatty Liver Disease by Modulating Mouse Gut Microbiota
Cited by: 77
Author(s): Huilin Liu, Meihong Liu, Xueqi Fu, Ziqi Zhang, Liang Zhu, Xin Zheng, Jingsheng Liu
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu13030757

Navy Bean Supplementation in Established High-Fat Diet-Induced Obesity Attenuates the Severity of the Obese Inflammatory Phenotype
Cited by: 7
Author(s): Jennifer M. Monk, Wenqing Wu, Dion Lepp, K. Peter Pauls, Lindsay E. Robinson, Krista A. Power
Software Mentions: 1
Published: over 5 years ago

10.3390/nu9090821

Modulation of Gut Microbiota of Overweight Mice by Agavins and Their Association with Body Weight Loss
Cited by: 51
Author(s): Alicia Huazano-García, Hakdong Shin, Mercedes G. López
Software Mentions: 1
Published: almost 9 years ago

10.3390/nu13051400

Using Oral Microbiota Data to Design a Short Sucrose Intake Index
Cited by: 3
Author(s): Anders Esberg, Linda Eriksson, Pamela Hasslöf, Simon Haworth, Pernilla Lif Holgerson, Ingegerd Johansson
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10101556

Low Diversity of Human Milk Oligosaccharides is Associated with Necrotising Enterocolitis in Extremely Low Birth Weight Infants
Cited by: 38
Author(s): Erik Wejryd, Magalí Martí, Giovanna Marchini, Anna Werme, Baldvin Jónsson, Eva Landberg, Thomas Abrahamsson
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu11071541

Diversity of Gut Microbiota Affecting Serum Level of Undercarboxylated Osteocalcin in Patients with Crohn’s Disease
Cited by: 16
Author(s): Kohei Wagatsuma, Satoshi Yamada, Ao Mei, Minoru Matsuura, Hideaki Tsuji, Tomoya Iida, Kentaro Miyamoto, Koichiro Oka, Motomichi Takahashi, Kiyoshi Tanaka, Hiroshi Nakase
Software Mentions: 1
Published: about 7 years ago

10.3390/nu13051569

The TOTUM-63 Supplement and High-Intensity Interval Training Combination Limits Weight Gain, Improves Glycemic Control, and Influences the Composition of Gut Mucosa-Associated Bacteria in Rats on a High Fat Diet
Cited by: 12
Author(s): Marine Dupuit, Vivien Chavanelle, Benoît Chassaing, Fanny Perrière, Monique Etienne, Claire Plissonneau, Audrey Boscaro, Nicolas Barnich, Vincent Pialoux, Thierry Maugard, Florian Le Joubioux, Sébastien Peltier, Pascal Sirvent, Yolanda F. Otero, Nathalie Boisseau
Software Mentions: 1
Published: over 5 years ago

10.3390/nu13061982

Evaluation of the Cholesterol-Lowering Mechanism of Enterococcus faecium Strain 132 and Lactobacillus paracasei Strain 201 in Hypercholesterolemia Rats
Cited by: 15
Author(s): Lingshuang Yang, Xinqiang Xie, Ying Liu, Lei Wu, Congcong Fan, Tingting Liang, Yu X, Shuanghong Yang, Haixin Li, Jumei Zhang, Yu Ding, L. Xue, Moutong Chen, Juan Wang, Qingping Wu
Software Mentions: 1
Published: about 5 years ago

10.3390/nu11061345

Resistant Starch Is Actively Fermented by Infant Faecal Microbiota and Increases Microbial Diversity
Cited by: 21
Author(s): Geetha Gopalsamy, Elissa Mortimer, Paul Greenfield, Anthony R. Bird, Graeme P. Young, Claus T. Christophersen
Software Mentions: 1
Published: about 7 years ago

10.3390/nu13093247

Modifications in the Intestinal Functionality, Morphology and Microbiome Following Intra-Amniotic Administration (Gallus gallus) of Grape (Vitis vinifera) Stilbenes (Resveratrol and Pterostilbene)
Cited by: 13
Author(s): Mariana Juste Contin Gomes, Nikolai Kolba, Nikita Agarwal, Dean Kim, Adi Eshel, Omry Koren, Elad Tako
Software Mentions: 1
Published: almost 5 years ago

10.3390/nu12040937

Randomised Double-Blind Placebo-Controlled Trial of Inulin with Metronidazole in Non-Alcoholic Fatty Liver Disease (NAFLD)
Cited by: 31
Author(s): Clara Yieh Lin Chong, David W. Orr, Lindsay D. Plank, Tommi Vatanen, Justin M. O’Sullivan, Rinki Murphy
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12072127

Circulating Short-Chain Fatty Acids Are Positively Associated with Adiposity Measures in Chinese Adults
Cited by: 17
Author(s): Yiqing Wang, Huijun Wang, Annie Green Howard, Katie A. Meyer, Matthew C. B. Tsilimigras, Christy L. Avery, Sha Wang, Shan Sun, Jiguo Zhang, Chang Su, Bing Zhang, Anthony A. Fodor
Software Mentions: 1
Published: about 6 years ago

10.3390/nu10070890

A Vegetarian Diet Is a Major Determinant of Gut Microbiota Composition in Early Pregnancy
Cited by: 70
Author(s): Helen L. Barrett, Luisa F. Gomez-Arango, Shelley A. Wilkinson, H. David McIntyre, Leonie K. Callaway, Mark Morrison, Marloes Dekker Nitert
Software Mentions: 1
Published: about 8 years ago

10.3390/nu13062107

Habitual Dietary Intake Affects the Altered Pattern of Gut Microbiome by Acarbose in Patients with Type 2 Diabetes
Cited by: 13
Author(s): Fumie Takewaki, Harushi Nakajima, Daiki Takewaki, Yoshitaka Hashimoto, Susumu Majima, Hiroshi Okada, Takafumi Senmaru, Emi Ushigome, Masahide Hamaguchi, Masahiro Yamazaki, Yoshiki Tanaka, Shunji Nakajima, Hiroshi Ohno, Michiaki Fukui
Software Mentions: 1
Published: about 5 years ago

10.3390/nu13062030

Acceleration of Small Intestine Development and Remodeling of the Microbiome Following Hyaluronan 35 kDa Treatment in Neonatal Mice
Cited by: 10
Author(s): Hala Chaaban, Kathryn Burge, Jeffrey Eckert, MaJoi Trammell, David W. Dyer, Ravi S. Keshari, Robert Silasi‐Mansat, Girija Regmi, Cristina Lupu, Misty Good, Steven J. McElroy, Florea Lupu
Software Mentions: 1
Published: about 5 years ago

10.3390/nu7063999

Pyrosequencing Analysis Reveals Changes in Intestinal Microbiota of Healthy Adults Who Received a Daily Dose of Immunomodulatory Probiotic Strains
Cited by: 47
Author(s): Julio Plaza‐Díaz, Jose Ángel Fernández-Caballero, Natalia Chueca, Féderico García, Carolina Gómez-Llorente, María José Sáez-Lara, Luis Fontana, Ángel Gil
Software Mentions: 1
Published: about 11 years ago

10.3390/nu12030681

Oral Microbiota Profile Associates with Sugar Intake and Taste Preference Genes
Cited by: 32
Author(s): Anders Esberg, Simon Haworth, Pamela Hasslöf, Pernilla Lif Holgerson, Ingegerd Johansson
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12082220

Effect of Choline Forms and Gut Microbiota Composition on Trimethylamine-N-Oxide Response in Healthy Men
Cited by: 30
Author(s): Clara E. Cho, Niklas Aardema, Madison L Bunnell, Deanna Larson, Sheryl S. Aguilar, Janet R Bergeson, Olga Malysheva, Marie A. Caudill, Michael Lefevre
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0181531

Response of Posidonia oceanica seagrass and its epibiont communities to ocean acidification
Cited by: 28
Author(s): Katja Guilini, Miriam Weber, Dirk de Beer, M. Schneider, Massimiliano Molari, Christian Lott, Wanda Bodnar, Thibaud Mascart, Marleen De Troch, Ann Vanreusel
Software Mentions: 1
Published: about 9 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning PERMANOVA 6,292