cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.02015

The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment
Cited by: 10
Author(s): Jeremiah J. Minich, Cecilia Power, Michaela Melanson, Rob Knight, Claire Webber, Kirsten Rough, Nathan J. Bott, Barbara F. Nowak, Eric E. Allen
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.01442

Distinct Taxonomic and Functional Profiles of the Microbiome Associated With Different Soil Horizons of a Moist Tussock Tundra in Alaska
Cited by: 21
Author(s): Binu M. Tripathi, Hye Min Kim, Jae Chang Jung, Sang Heon Nam, Hyeontae Ju, Min‐Cheol Kim, Yoo Kyung Lee
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2015.00865

Warming reduces the cover and diversity of biocrust-forming mosses and lichens, and increases the physiological stress of soil microbial communities in a semi-arid Pinus halepensis plantation
Cited by: 49
Author(s): Fernando T. Maestre, Cristina Escolar, Richard D. Bardgett, Jennifer A. J. Dungait, Beatriz Gozalo, Victoria Ochoa
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2014.00493

Unprecedented evidence for high viral abundance and lytic activity in coral reef waters of the South Pacific Ocean
Cited by: 27
Author(s): JÃ©rÃ ́me P. Payet, Ryan McMinds, Deron E. Burkepile, Rebecca L. Vega Thurber
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2020.599829

Endosphere Microbiome and Metabolic Differences Between the Spots and Green Parts of Tricyrtis macropoda Leaves
Cited by: 3
Author(s): Yan Wang, Hui Cheng, Fan Chang, Li-Jun Zhao, Bin Wang, Yi Wan, Ming Yue
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01625

Comparative Analysis of Microbial Diversity Across Temperature Gradients in Hot Springs From Yellowstone and Iceland
Cited by: 43
Author(s): Peter T. Podar, Zamin K. Yang, Snædís H. Björnsdóttir, Mircea Podar
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.67450

Glycan-based shaping of the microbiota during primate evolution
Cited by: 7
Author(s): Sumnima Singh, Patricia Bastos-Amador, Jessica A. Thompson, Mauro Truglio, Bahtiyar Yılmaz, Sílvia Cardoso, Daniel Sobral, Miguel P. Soares
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87662-5

The non-indigenous Oithona davisae in a Mediterranean transitional environment: coexistence patterns with competing species
Cited by: 7
Author(s): Marco Pansera, Elisa Camatti, Anna Schroeder, Giacomo Zagami, A. Bergamasco
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87767-x

Trophic indices for micronektonic fishes reveal their dependence on the microbial system in the North Atlantic
Cited by: 15
Author(s): Antonio Bode, M. Pilar Olivar, Santiago Hernández‐León
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01265

Changes in Symbiotic Microbiota and Immune Responses in Early Development Stages of Rapana venosa (Valenciennes, 1846) Provide Insights Into Immune System Development in Gastropods
Cited by: 4
Author(s): Mei‐Jie Yang, Hao Song, Zhi Yu, Zhi Hu, Cong Zhou, Xiaolong Wang, Tao Zhang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-88536-6

SARS-CoV-2 does not have a strong effect on the nasopharyngeal microbial composition
Cited by: 26
Author(s): Tzipi Braun, Shiraz Halevi, Rotem Hadar, Gilat Efroni, Efrat Glick Saar, Natahan Keller, Amir Almasi‐Hashiani, Sharon Amit, Yael Haberman
Software Mentions: 1
Published: over 5 years ago

10.1186/s13227-019-0119-4

The role of the hyaline spheres in sea cucumber metamorphosis: lipid storage via transport cells in the blastocoel
Cited by: 12
Author(s): Josefina Peters-Didier, Mary A. Sewell
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/5584247

Effect of Acupuncture on Gut-Brain Axis Parameters in Patients with Atopic Dermatitis: A Study Protocol for a Randomized, Participant- and Assessor-Blind, Sham-Controlled Trial
Cited by: 0
Author(s): Jundong Kim, Soon Kyeong Kwon, In Seon Lee, Mijung Yeom, Dae Hyun Hahm, Hi-Joon Park, Kyuseok Kim
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.52787

Rarity is a more reliable indicator of land-use impacts on soil invertebrate communities than other diversity metrics
Cited by: 15
Author(s): Andrew Dopheide, Andreas Makiola, Kate H. Orwin, Robert J. Holdaway, Jamie R. Wood, Ian A. Dickie
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.665664

Influence of Filter Pore Size on Composition and Relative Abundance of Bacterial Communities and Select Host-Specific MST Markers in Coastal Waters of Southern Lake Michigan
Cited by: 3
Author(s): Muruleedhara N. Byappanahalli, Meredith B. Nevers, Dawn A. Shively, Cindy H. Nakatsu, Julie Kinzelman, Mantha S. Phanikumar
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.03166

Disorganized Gut Microbiome Contributed to Liver Cirrhosis Progression: A Meta-Omics-Based Study
Cited by: 45
Author(s): Li Shao, Zongxin Ling, Deying Chen, Yufeng Liu, Fan Yang, Lanjuan Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-88094-x

Author Correction: Centrifugation does not remove bacteria from the fat fraction of human milk
Cited by: 0
Author(s): Lisa F. Stinson, Jie Ma, Alethea Rea, Michael Dymock, Donna T. Geddes
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00117

Comparison of Fungal Community in Black Pepper-Vanilla and Vanilla Monoculture Systems Associated with Vanilla Fusarium Wilt Disease
Cited by: 50
Author(s): Wu Xiong, Qian Zhao, Cong Xue, Weibing Xun, Zhao Jun, Huasong Wu, Rong Li
Software Mentions: 1
Published: over 10 years ago

10.1155/2021/4602612

The Herbal Formula Granule Prescription Mahuang Decoction Ameliorated Chronic Kidney Disease Which Was Associated with Restoration of Dysbiosis of Intestinal Microbiota in Rats
Cited by: 5
Author(s): Ming Yao, Sijing Cheng, Wuqiang Long, Hong‐Lian Wang, Chuanlan Xu, Xiaoyu Liu, Qiong Zhang, Sha Zhao, Xia Zou, Jianhui Fan, Li Wang, Hongchun Shen
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.641483

Blastocystis Colonization Alters the Gut Microbiome and, in Some Cases, Promotes Faster Recovery From Induced Colitis
Cited by: 28
Author(s): Vincent Billy, Zuzana Lhotská, Milan Jirků, O Kadlecová, Lucia Frgelecová, Laura Wegener Parfrey, Kateřina Jirků-Pomajbíková
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2015.01221

Hydrologic linkages drive spatial structuring of bacterial assemblages and functioning in alpine floodplains
Cited by: 23
Author(s): Remo Freimann, Helmut Bürgmann, Stuart E. G. Findlay, Christopher T. Robinson
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2019.01575

Longitudinal Survey of Fungi in the Human Gut: ITS Profiling, Phenotyping, and Colonization
Cited by: 81
Author(s): Stefano Raimondi, Alberto Amaretti, Caterina Gozzoli, Marta Simone, Lucia Righini, Francesco Candeliere, Paola Brun, Andrea Ardizzoni, Bruna Colombari, Simona Paulone, Ignazio Castagliuolo, Duccio Cavalieri, Elisabetta Blasi, Maddalena Rossi, Samuele Peppoloni
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2014.00309

Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments
Cited by: 53
Author(s): François Thomas, Anne E. Giblin, Zoë G. Cardon, Stefan M. Sievert
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-021-89963-1

Profiling of tumour-associated microbiota in human hepatocellular carcinoma
Cited by: 41
Author(s): Seiga Komiyama, Takahiro Yamada, Nobuyuki Takemura, Norihiro Kokudo, Koji Hase, Yuki I. Kawamura
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.2992

Ants as ecological indicators of rainforest restoration: Community convergence and the development of an Ant Forest Indicator Index in the Australian wet tropics
Cited by: 32
Author(s): Michael J. Lawes, Anthony M. Moore, Alan N. Andersen, Noel D. Preece, Donald C. Franklin
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-021-90185-8

Unravelling the fatty acid profiles of different polychaete species cultured under integrated multi-trophic aquaculture (IMTA)
Cited by: 8
Author(s): Daniel Jerónimo, Ana I. Lillebø, Elisabete Maciel, M. Rosário M. Domingues, Javier Cremades, Ricardo Calado
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.610231

Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and Activity
Cited by: 33
Author(s): Jingguang Cheng, Justine Jacquin, Pascal Conan, Mireille Pujo‐Pay, Valérie Barbe, Matthieu George, Pascale Fabre, Stéphane Bruzaud, Alexandra ter Halle, Anne-Leïla Meistertzheim, Jean-François Ghiglione
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02822

Inhibition of Rumen Protozoa by Specific Inhibitors of Lysozyme and Peptidases in vitro
Cited by: 6
Author(s): Tansol Park, Huiling Mao, Zhongtang Yu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.02000

The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine Herbivorous Fish
Cited by: 50
Author(s): Jacquelyn Jones, Joseph D. DiBattista, Michael Stat, Michael Bunce, Mary C. Boyce, David V. Fairclough, Michael J. Travers, Megan J. Huggett
Software Mentions: 1
Published: about 8 years ago

10.1002/ece3.7293

Dynamics of bird assemblages in response to temporally and spatially variable resources in arid Australia
Cited by: 3
Author(s): Bruce A. Pascoe, Chris R. Pavey, Stephen Morton, Christine A. Schlesinger
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.5366

Are <i>Drosophila</i> preferences for yeasts stable or contextual?
Cited by: 14
Author(s): Catrin S. Günther, Sarah Knight, Rhys Jones, Matthew R. Goddard
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-90877-1

Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China
Cited by: 12
Author(s): Vincent L. Pecoraro, Henrik Rasmussen, Sofia I. F. Gomes, Xiao Wang, Vincent Merckx, Lei Cai, Folke Rasmussen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-91066-w

Plant debris are hotbeds for pathogenic bacteria on recreational sandy beaches
Cited by: 4
Author(s): Yoshihiro Suzuki, Hiroki Shimizu, Takahiro Kuroda, Yusuke Takada, Kei Nukazawa
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.02535

Temporal Variation of the Skin Bacterial Community and Batrachochytrium dendrobatidis Infection in the Terrestrial Cryptic Frog Philoria loveridgei
Cited by: 25
Author(s): Mariel Familiar López, Eria A. Rebollar, Reid N. Harris, Vance T. Vredenburg, Jean‐Marc Hero
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-90976-z

Mortality and microbial diversity after allogeneic hematopoietic stem cell transplantation: secondary analysis of a randomized nutritional intervention trial
Cited by: 6
Author(s): Kristin Aneta Joan Skaarud, Johannes Espolin Roksund Hov, Simen Hyll Hansen, Martin Kummen, Jørgen Valeur, Ingebjørg Seljeflot, Asta Bye, Vemund Paulsen, Knut E.A. Lundin, Marius Trøseid, Geir E. Tjønnfjord, Per Ole Iversen
Software Mentions: 1
Published: over 5 years ago

10.1007/s00394-019-02036-y

Long-term Paleolithic diet is associated with lower resistant starch intake, different gut microbiota composition and increased serum TMAO concentrations
Cited by: 53
Author(s): Angela Genoni, Claus T. Christophersen, Johnny Lo, Megan L. Coghlan, Mary C. Boyce, Anthony R. Bird, Philippa Lyons‐Wall, Amanda Devine
Software Mentions: 1
Published: about 7 years ago

10.1021/acs.est.0c07805

Severe Toxic Effects on Pelagic Copepods from Maritime Exhaust Gas Scrubber Effluents
Cited by: 16
Author(s): Peter Thor, Maria Granberg, Hulda Winnes, Kerstin Magnusson
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01536

Nexus of Stochastic and Deterministic Processes on Microbial Community Assembly in Biological Systems
Cited by: 28
Author(s): Heyang Yuan, Renwei Mei, Junhui Liao, Wen Tso Liu
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.46205

Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities
Cited by: 32
Author(s): Evan T. Saitta, Renxing Liang, Maggie C. Y. Lau, Caleb M. Brown, Nicholas R. Longrich, Thomas G. Kaye, Ben J. Novak, Steven L. Salzberg, Mark A. Norell, Geoffrey D. Abbott, Marc R. Dickinson, Jakob Vinther, Ian D. Bull, Richard A. Brooker, Peter Martin, Paul Donohoe, Timothy Knowles, Kirsty Penkman, Tullis C. Onstott
Software Mentions: 1
Published: about 7 years ago

10.1007/s11356-017-8851-6

Response of marine benthic fauna to thin-layer capping with activated carbon in a large-scale field experiment in the Grenland fjords, Norway
Cited by: 18
Author(s): Göran Samuelsson, Caroline Raymond, Stefan Agrenius, Morten Schaanning, Gerard Cornelissen, Jonas S. Gunnarsson
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01972

Strong Regionality and Dominance of Anaerobic Bacterial Taxa Characterize Diazotrophic Bacterial Communities of the Arcto-Alpine Plant Species Oxyria digyna and Saxifraga oppositifolia
Cited by: 7
Author(s): Manoj Kumar, Jan Dirk van Elsas, Riitta Nissinen
Software Mentions: 1
Published: almost 9 years ago

10.1007/s11356-015-5049-7

Seagrass vegetation and meiofauna enhance the bacterial abundance in the Baltic Sea sediments (Puck Bay)
Cited by: 13
Author(s): Emilia Jankowska, Katarzyna Jankowska, Maria Włodarska‐Kowalczuk
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-021-91351-8

Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat
Cited by: 27
Author(s): Holly Hone, Ross Mann, Guodong Yang, Jatinder Kaur, Ian Tannenbaum, Tongda Li, Germán Spangenberg, Tim Sawbridge
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01870

The Shifts of Diazotrophic Communities in Spring and Summer Associated with Coral Galaxea astreata, Pavona decussata, and Porites lutea
Cited by: 10
Author(s): Yanying Zhang, Qingsong Yang, Juan Ling, Joy D. Van Nostrand, Zhou Shi, Jizhong Zhou, Jinyun Dong
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-021-91783-2

Diversity and interactions among triatomine bugs, their blood feeding sources, gut microbiota and Trypanosoma cruzi in the Sierra Nevada de Santa Marta in Colombia
Cited by: 11
Author(s): Claribel Murillo-Solano, Jaime López-Domínguez, Rafael Góngora, Andres Rojas Gulloso, José A. Usme-Ciro, Erick Perdomo-Balaguera, Claudia Herrera, Gabriel Parra-Henao, Eric Dumonteil
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.665853

Captivity Is Associated With Gut Mycobiome Composition in Tibetan Macaques (Macaca thibetana)
Cited by: 16
Author(s): Binghua Sun, Yingna Xia, Paul A. Garber, Katherine R. Amato, Andrés Gómez, Xiaojuan Xu, Wenbo Li, Mingjing Huang, Dong-Po Xia, Xi Wang, Jinhua Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-91448-0

Major ocean currents may shape the microbiome of the topshell Phorcus sauciatus in the NE Atlantic Ocean
Cited by: 5
Author(s): Ricardo Sousa, Joana Vasconcelos, Iván Vera-Escalona, J. M. P. Q. Delgado, Mafalda Freitas, José A. González, Rodrigo Riera
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-91927-4

Abyssal deposit feeders are secondary consumers of detritus and rely on nutrition derived from microbial communities in their guts
Cited by: 7
Author(s): Sonia Romero-Romero, Elizabeth Christina Miller, Jesse A. Black, Brian N. Popp, Jeffrey C. Drazen
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.01848

Sample Preservation, DNA or RNA Extraction and Data Analysis for High-Throughput Phytoplankton Community Sequencing
Cited by: 53
Author(s): Anita Mäki, Pauliina Salmi, Anu Mikkonen, Anke Kremp, Marja Tiirola
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2019.00553

Chemical Dispersant Enhances Microbial Exopolymer (EPS) Production and Formation of Marine Oil/Dispersant Snow in Surface Waters of the Subarctic Northeast Atlantic
Cited by: 8
Author(s): Laura Durán Suja, Xindi Chen, Stephen Summers, David M. Paterson, Tony Gutiérrez
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00796

Key Role of Alphaproteobacteria and Cyanobacteria in the Formation of Stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean)
Cited by: 31
Author(s): Emmanuelle Gérard, Siham de Goeyse, Mylène Hugoni, Hélène Agogué, Laurent Richard, Vincent Milesi, François Guyot, Léna Lecourt, Stéphan Borensztajn, Marie-Béatrice Joseph, Thomas Leclerc, Gérard Sarazin, Didier Jézéquel, Christophe Leboulanger, Magali Ader
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.02833

Impact of Sample Preservation and Manipulation on Insect Gut Microbiome Profiling. A Test Case With Fruit Flies (Diptera, Tephritidae)
Cited by: 21
Author(s): Maarten De Cock, M. Virgilio, Peter Vandamme, Antonios A. Augustinos, Kostas Bourtzis, Anne Willems, M. De Meyer
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-89896-9

Alterations in gut microbiota linked to provenance, sex, and chronic wasting disease in white-tailed deer (Odocoileus virginianus)
Cited by: 12
Author(s): David Minich, Christopher Madden, Morgan V. Evans, Gregory A. Ballash, Daniel J. Barr, Keith P. Poulsen, Patricia M. Dennis, Vanessa L. Hale
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.613356

Safety and Efficacy of a Phage, kpssk3, in an in vivo Model of Carbapenem-Resistant Hypermucoviscous Klebsiella pneumoniae Bacteremia
Cited by: 11
Author(s): Yun-Long Shi, Yuan Peng, Yixin Zhang, Yu Chen, Cheng Zhang, X. G. Luo, Yajie Chen, Zhiqiang Yuan, Jing Chen, Yanhong Gong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-92796-7

Minor alterations in the intestinal microbiota composition upon Rotavirus infection do not affect susceptibility to DSS colitis
Cited by: 2
Author(s): Kedir Hussen Hamza, Emma Dunér, Isabel Ulmert, Armando Arias, Daniel Sorobetea, Katharina Lahl
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.569366

Inoculation With the Plant-Growth-Promoting Rhizobacterium Pseudomonas fluorescens LBUM677 Impacts the Rhizosphere Microbiome of Three Oilseed Crops
Cited by: 21
Author(s): J. Jiménez, Amy Novinscak, Martin Filion
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.00946

Geographical and Cultivar Features Differentiate Grape Microbiota in Northern Italy and Spain Vineyards
Cited by: 82
Author(s): Valerio Mezzasalma, Anna Sandionigi, Lorenzo Guzzetti, Andrea Galimberti, S. Grando, Javier Tardáguila, Massimo Labra
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.02634

Exogenous Nitric Oxide and Phosphorus Stress Affect the Mycorrhization, Plant Growth, and Associated Microbes of Carya illinoinensis Seedlings Colonized by Tuber indicum
Cited by: 12
Author(s): Xiaoping Zhu, Xin Li, Chenguang Wu, Lei Ye, Zongjing Kang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41396-019-0506-9

Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean
Cited by: 64
Author(s): Caterina R. Giner, Massimo C. Pernice, Vanessa Balagué, Carlos M. Duarte, Josep M. Gasol, Ramiro Logares, Ramón Massana
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2019.02459

The Stain of the Original Salt: Red Heats on Chrome Tanned Leathers and Purple Spots on Ancient Parchments Are Two Sides of the Same Ecological Coin
Cited by: 12
Author(s): Nicoletta Perini, F. Mercuri, María Cristina Thaller, S. Orlanducci, Domenico Castiello, Valerio Talarico, Luciana Migliore
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.00784

Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle
Cited by: 23
Author(s): Cynthia B. Silveira, Gustavo Bueno Gregoracci, Felipe H. Coutinho, Genivaldo G. Z. Silva, John M. Haggerty, Louisi Souza de Oliveira, Anderson de Souza Cabral, Carlos Eduardo de Rezende, Cristiane C. Thompson, Ronaldo B. Francini‐Filho, Robert A. Edwards, Elizabeth A. Dinsdale, Fabiano L. Thompson
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.02209

Dietary Bile Salt Types Influence the Composition of Biliary Bile Acids and Gut Microbiota in Grass Carp
Cited by: 27
Author(s): Fan Xiong, Shan Wu, Jing Zhang, Ivan Jakovlić, Wen Xiang Li, Hong Zou, Ming Li, Gui Tang Wang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2019.00093

Production of Naturally γ-Aminobutyric Acid-Enriched Cheese Using the Dairy Strains Streptococcus thermophilus 84C and Lactobacillus brevis DSM 32386
Cited by: 27
Author(s): Ilaria Carafa, Giorgia Stocco, T. Nardin, R. Larcher, Giovanni Bittante, Kieran Tuohy, Elena Franciosi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41396-020-0648-9

Variation in rhizosphere microbial communities and its association with the symbiotic efficiency of rhizobia in soybean
Cited by: 129
Author(s): Han Qin, Qun Ma, Yong Chen, Bing Tian, Lanxi Xu, Yang Bai, Wenfeng Chen, Xia Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.632715

Experimental Warming Reduces Survival, Cold Tolerance, and Gut Prokaryotic Diversity of the Eastern Subterranean Termite, Reticulitermes flavipes (Kollar)
Cited by: 8
Author(s): Rachel A. Arango, Sean D. Schoville, Cameron R. Currie, Camila Carlos‐Shanley
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01848

Different Gut Microbial Profiles in Sub-Saharan African and South Asian Women of Childbearing Age Are Primarily Associated With Dietary Intakes
Cited by: 15
Author(s): Minghua Tang, Daniel N. Frank, Antoinette Tshefu, Adrien Lokangaka, Shivaprasad S. Goudar, Sangappa Dhaded, Manjunath S Somannavar, Audrey E. Hendricks, Diana Ir, Charles E. Robertson, Jennifer Kemp, Rebecca L. Lander, Jamie E Westcott, K. Michael Hambidge, Nancy F. Krebs
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.01165

Cryoconite Hole Location in East-Antarctic Untersee Oasis Shapes Physical and Biological Diversity
Cited by: 14
Author(s): Klemens Weisleitner, A. Perras, Seraphin Hubert Unterberger, Christine Moissl-Eichinger, Dale T. Andersen, Birgit Sattler
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01572

Seasonal Changes of Airborne Bacterial Communities Over Tokyo and Influence of Local Meteorology
Cited by: 61
Author(s): Jun Uetake, Yutaka Tobo, Yasushi Uji, Thomas C. J. Hill, Paul J. DeMott, Sonia M. Kreidenweis, Ryohei Misumi
Software Mentions: 1
Published: about 7 years ago

10.1007/s11356-017-8377-y

Microbial changes linked to the accelerated degradation of the herbicide atrazine in a range of temperate soils
Cited by: 28
Author(s): Rachel Louise Yale, Melanie Sapp, Chris Sinclair, James Moir
Software Mentions: 1
Published: over 9 years ago

10.1038/s41396-021-00960-8

Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus
Cited by: 7
Author(s): Zheng-Shuang Hua, Matthew Ouellette, Andrea M. Makkay, R. Thane Papke, Olga Zhaxybayeva
Software Mentions: 1
Published: over 5 years ago

10.1007/s11356-020-11607-0

Impaired benthic macrofauna function 4 years after sediment capping with activated carbon in the Grenland fjords, Norway
Cited by: 4
Author(s): Caroline Raymond, Göran Samuelsson, Stefan Agrenius, Morten Schaanning, Jonas S. Gunnarsson
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.591462

Differential Responses to Dietary Protein and Carbohydrate Ratio on Gut Microbiome in Obese vs. Lean Cats
Cited by: 6
Author(s): Qinghong Li, Yuanlong Pan
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.01435

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics
Cited by: 62
Author(s): Kari Finstad, Alexander J. Probst, Brian C. Thomas, Gary L. Andersen, Cecilia Demergasso, Alex Echeverría, R. Amundson, Jillian F. Banfield
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2019.01255

Diatom-Bacteria Interactions Modulate the Composition and Productivity of Benthic Diatom Biofilms
Cited by: 53
Author(s): Coco Koedooder, Willem Stock, Anne Willems, Sven Mangelinckx, Marleen De Troch, Wim Vyverman, Koen Sabbe
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.02588

Exposure to Antibiotics Affects Saponin Immersion-Induced Immune Stimulation and Shift in Microbial Composition in Zebrafish Larvae
Cited by: 24
Author(s): Adrià López Nadal, David Peggs, G.F. Wiegertjes, Sylvia Brugman
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.00367

Metatranscriptomic Profiling Reveals the Effect of Breed on Active Rumen Eukaryotic Composition in Beef Cattle With Varied Feed Efficiency
Cited by: 18
Author(s): Yawei Zhang, Fuyong Li, Yanhong Chen, Hao Wu, Qingxiang Meng, Le Luo Guan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-019-0531-8

Consistent host and organ occupancy of phyllosphere bacteria in a community of wild herbaceous plant species
Cited by: 67
Author(s): Julien Massoni, Miriam Bortfeld‐Miller, Ludwig Jardillier, Guillem Salazar, Shinichi Sunagawa, Julia A. Vorholt
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2012.00444

Same, same but different: symbiotic bacterial associations in GBR sponges
Cited by: 44
Author(s): Nicole S. Webster, Heidi M. Luter, Rochelle M. Soo, Emmanuelle S. Botté, Rachel L. Simister, Dave Abdo, Steve W Whalan
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2019.00889

The Effect of Disease and Season to Hepatopancreas and Intestinal Mycobiota of Litopenaeus vannamei
Cited by: 21
Author(s): Juan Li, Haiying Jiang, Linmiao Li, Xiujuan Zhang, Jinping Chen
Software Mentions: 1
Published: over 7 years ago

10.1039/d0en00883d

Environmentally relevant concentrations of titanium dioxide nanoparticles pose negligible risk to marine microbes
Cited by: 24
Author(s): Craig J. Dedman, Aaron A. King, Joseph Alexander Christie-Oleza, G. R. Davies
Software Mentions: 1
Published: over 5 years ago

10.1186/s40793-020-00362-x

Performance evaluation of high-volume electret filter air samplers in aerosol microbiome research
Cited by: 4
Author(s): Kari Oline Bøifot, Jostein Gohli, Gunnar Skogan, Marius Dybwad
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.656269

Temporal and Spatial Changes in Phyllosphere Microbiome of Acacia Trees Growing in Arid Environments
Cited by: 11
Author(s): Ashraf Al-Ashhab, Shiri Meshner, Rivka Alexander-Shani, Hana Dimerets, Michael Brandwein, Yael Bar-Lavan, Gidon Winters
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.617800

Caeca Microbial Variation in Broiler Chickens as a Result of Dietary Combinations Using Two Cereal Types, Supplementation of Crude Protein and Sodium Butyrate
Cited by: 8
Author(s): Daniel Borda-Molina, Gábor Mátis, Máté Mackei, Zsuzsanna Neogrády, Korinna Huber, Jana Seifert, Amélia Camarinha‐Silva
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.685111

Impact of Soil Disinfestation on Fungal and Bacterial Communities in Soil With Cucumber Cultivation
Cited by: 2
Author(s): Yan Wang, Yujie Jin, Ping Han, Jianjun Hao, Hongyu Pan, Jinliang Liu
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.614501

Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.)
Cited by: 46
Author(s): Lioba Rüger, Kai Feng, Kenneth Dumack, Jule Freudenthal, Yan Chen, Run‐Cang Sun, Monica Wilson, Peng Yu, Bo Sun, Ye Deng, Frank Hochholdinger, Doris Vetterlein, Michael Bonkowski
Software Mentions: 1
Published: over 5 years ago

10.1111/1758-2229.12115

Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen‐cycling gene abundance in coastal sediments
Cited by: 44
Author(s): Bonnie Laverock, Karen Tait, Jack A. Gilbert, A. Mark Osborn, Stephen Widdicombe
Software Mentions: 1
Published: almost 13 years ago

10.1111/1758-2229.12739

Ontogeny of symbiont community structure in two carotenoid‐rich, viviparous marine sponges: comparison of microbiomes and analysis of culturable pigmented heterotrophic bacteria
Cited by: 17
Author(s): Oriol Sacristán-Soriano, Marina Winkler, Patrick M. Erwin, Jeremy B. Weisz, Olivia Harriott, Gary E. Heussler, Emily A. Bauer, Brittany W. Marsden, Andrew P. Hill, Malcolm Hill
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.01252

Shotgun Metagenomics Reveals the Benthic Microbial Community Response to Plastic and Bioplastic in a Coastal Marine Environment
Cited by: 117
Author(s): Lee J. Pinnell, John Turner
Software Mentions: 1
Published: over 7 years ago

10.3390/jof6030100

Lipid Species in the GI Tract are Increased by the Commensal Fungus Candida albicans and Decrease the Virulence of Clostridioides difficile
Cited by: 5
Author(s): Jesús A. Romo, Laura Markey, Carol A. Kumamoto
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.721441

Different Amounts of Nitrogen Fertilizer Applications Alter the Bacterial Diversity and Community Structure in the Rhizosphere Soil of Sugarcane
Cited by: 11
Author(s): Yan Gu, Jihua Wang, Wei‐Jun Cai, Guoliang Li, Man Yu, Sen Yang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.00065

Combined Carbohydrates Support Rich Communities of Particle-Associated Marine Bacterioplankton
Cited by: 25
Author(s): Martin Sperling, Judith Piontek, Anja Engel, Karen Helen Wiltshire, Jutta Niggemann, Gunnar Gerdts, Antje Wichels
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.02073

Diets Alter the Gut Microbiome of Crocodile Lizards
Cited by: 64
Author(s): Haiying Jiang, Jinge Ma, Juan Li, Xiujuan Zhang, Linmiao Li, Nan He, Haiyang Liu, Shuyi Luo, Zhengjun Wu, Ri-Chou Han, Jinping Chen
Software Mentions: 1
Published: almost 9 years ago

10.3390/jof6040364

Fungal Dysbiosis Correlates with the Development of Tumor-Induced Cachexia in Mice
Cited by: 10
Author(s): Daniela Jabès, Yara Natércia Lima Faustino de Maria, David Aciole Barbosa, Kaltinaitis B. Santos, Lucas Miguel de Carvalho, Ana Carolina Humberto, Valquíria Campos Alencar, Regina Costa de Oliveira, Mauro Alexandre Benites Batista, Fabiano Bezerra Menegídio, Luiz R. Nunes
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00487

Host and Aquatic Environment Shape the Amphibian Skin Microbiome but Effects on Downstream Resistance to the Pathogen Batrachochytrium dendrobatidis Are Variable
Cited by: 56
Author(s): Andrea J. Jani, Cheryl J. Briggs
Software Mentions: 1
Published: over 8 years ago

10.3390/foods10081814

Partial Substitution of Meat with Insect (Alphitobius diaperinus) in a Carnivore Diet Changes the Gut Microbiome and Metabolome of Healthy Rats
Cited by: 10
Author(s): Sofie Kaas Lanng, Yichang Zhang, Kristine Rothaus Christensen, Axel Kornerup Hansen, Dennis Sandris Nielsen, Witold Kot, Hanne Christine Bertram
Software Mentions: 1
Published: about 5 years ago

10.3390/foods10061282

Bee Pollen Diet Alters the Bacterial Flora and Antimicrobial Peptides in the Oral Cavities of Mice
Cited by: 4
Author(s): Ariuntsetseg Khurelchuluun, Osamu Uehara, Durga Paudel, Tetsuro Morikawa, Yutaka Kawano, Mashu Sakata, Hiroshi Shibata, Koki Yoshida, Jun Sato, Hiroko Miura, Hiroki Nagayasu
Software Mentions: 1
Published: over 5 years ago

10.3390/foods10020349

Rare Earths as Authenticity Markers for the Discrimination of Greek and Turkish Pistachios Using Elemental Metabolomics and Chemometrics
Cited by: 9
Author(s): Natasa P. Kalogiouri, Natalia Manousi, Dimitris Klaoudatos, Thomas Spanos, Vilson Topi, George A. Zachariadis
Software Mentions: 1
Published: over 5 years ago

10.1111/1462-2920.14750

Dynamics of the Pacific oyster pathobiota during mortality episodes in Europe assessed by 16S rRNA gene profiling and a new target enrichment next‐generation sequencing strategy
Cited by: 46
Author(s): Aide Lasa, Andrea Di Cesare, Giovanni Tassistro, Alessio Borello, Stefano Gualdi, Dolors Furones, Noèlia Carrasco, Deborah Cheslett, Amanda Bréchon, Christine Paillard, Adeline Bidault, Fabrice Pernet, Laura Canesi, Paolo Edomi, Alberto Pallavicini, Carla Pruzzo, Luigi Vezzulli
Software Mentions: 1
Published: about 7 years ago

10.3390/jof7060461

Soil Reservoir Dynamics of Ophidiomyces ophidiicola, the Causative Agent of Snake Fungal Disease
Cited by: 13
Author(s): Lewis J. Campbell, Joanna Burger, Robert T. Zappalorti, John F. Bunnell, Megan E. Winzeler, Daniel R. Taylor, Jeffrey M. Lorch
Software Mentions: 1
Published: over 5 years ago

10.3390/jof7060426

A Multiomic Approach to Understand How Pleurotus eryngii Transforms Non-Woody Lignocellulosic Material
Cited by: 8
Author(s): Ander Peña, Rashid Babiker, Delphine Chaduli, Anna Lipzen, Mei Wang, Mansi Chovatia, Jorge Rencoret, Gisela Marques, María Isabel Sánchez-Ruiz, Teeratas Kijpornyongpan, Davinia Salvachúa, Susana Camarero, Vivian Ng, Ana Gutiérrez, Igor V. Grigoriev, Marie‐Noëlle Rosso, Ángel T. Martínez, Francisco J. Ruíz-Dueñas
Software Mentions: 1
Published: over 5 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292