cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/nu12061705

The High-Fat Diet Based on Extra-Virgin Olive Oil Causes Dysbiosis Linked to Colorectal Cancer Prevention
Cited by: 19
Author(s): Carmen Rodríguez-García, Cristina Sánchez-Quesada, Ignacio Algarra, José J. Gaforio
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0101701

Within-Otolith Variability in Chemical Fingerprints: Implications for Sampling Designs and Possible Environmental Interpretation
Cited by: 15
Author(s): Antonio Franco, Fabio Bulleri, Antonio Pennetta, Giuseppe E. De Benedetto, K.R. Clarke, Paolo Guidetti
Software Mentions: 1
Published: about 12 years ago

10.1155/2020/2375676

Gut Bacteria Selectively Altered by Sennoside A Alleviate Type 2 Diabetes and Obesity Traits
Cited by: 21
Author(s): Zhonghong Wei, Pengfei Shen, Cheng Peng, Yin Lu, Aiyun Wang, Zilin Sun
Software Mentions: 1
Published: about 6 years ago

10.1155/2020/1241894

Melatonin Alleviates Neuroinflammation and Metabolic Disorder in DSS-Induced Depression Rats
Cited by: 49
Author(s): Weijie Lv, Cui Liu, Linzeng Yu, Jiahao Zhou, Yue Li, Ying Xiong, Ao Guo, Limin Chao, Qian Qu, Wei Guang-wei, Xinggang Tang, Yulong Yin, Shining Guo
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0094111

Nitrate Reduction Functional Genes and Nitrate Reduction Potentials Persist in Deeper Estuarine Sediments. Why?
Cited by: 43
Author(s): Sokratis Papaspyrou, Cindy J. Smith, Lixin Dong, Corinne Whitby, Alex J. Dumbrell, David B. Nedwell
Software Mentions: 1
Published: over 12 years ago

10.3390/nu12030631

Effect of Caloric Restriction on BMI, Gut Microbiota, and Blood Amino Acid Levels in Non-Obese Adults
Cited by: 34
Author(s): Huajie Zou, Dan Wang, Huahui Ren, Kaiye Cai, Peishan Chen, Chao Fang, Zhun Shi, Pengfan Zhang, Jian Wang, Huanming Yang, Zhong Huang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-91351-8

Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat
Cited by: 27
Author(s): Holly Hone, Ross Mann, Guodong Yang, Jatinder Kaur, Ian Tannenbaum, Tongda Li, Germán Spangenberg, Tim Sawbridge
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0053742

Impacts on Coralligenous Outcrop Biodiversity of a Dramatic Coastal Storm
Cited by: 75
Author(s): Núria Teixidó, Edgar Casas, Emma Cebrián, Cristina Linares, Joaquim Garrabou
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-021-91783-2

Diversity and interactions among triatomine bugs, their blood feeding sources, gut microbiota and Trypanosoma cruzi in the Sierra Nevada de Santa Marta in Colombia
Cited by: 11
Author(s): Claribel Murillo-Solano, Jaime López-Domínguez, Rafael Góngora, Andres Rojas Gulloso, José A. Usme-Ciro, Erick Perdomo-Balaguera, Claudia Herrera, Gabriel Parra-Henao, Eric Dumonteil
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0080536

Bleaching Susceptibility and Recovery of Colombian Caribbean Corals in Response to Water Current Exposure and Seasonal Upwelling
Cited by: 36
Author(s): Elisa Bayraktarov, Valeria Pizarro, Corvin Eidens, Thomas Wilke, Christian Wild
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-91448-0

Major ocean currents may shape the microbiome of the topshell Phorcus sauciatus in the NE Atlantic Ocean
Cited by: 5
Author(s): Ricardo Sousa, Joana Vasconcelos, Iván Vera-Escalona, J. M. P. Q. Delgado, Mafalda Freitas, José A. González, Rodrigo Riera
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-91927-4

Abyssal deposit feeders are secondary consumers of detritus and rely on nutrition derived from microbial communities in their guts
Cited by: 7
Author(s): Sonia Romero-Romero, Elizabeth Christina Miller, Jesse A. Black, Brian N. Popp, Jeffrey C. Drazen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0060830

Which Environmental Factors Predict Seasonal Variation in the Coral Health of Acropora digitifera and Acropora spicifera at Ningaloo Reef?
Cited by: 13
Author(s): Saskia Hinrichs, Nicole L. Patten, Ming Feng, Daniel Strickland, Anya M. Waite
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0232689

Effect of age and the individual on the gastrointestinal bacteriome of ponies fed a high-starch diet
Cited by: 5
Author(s): Philippa K. Morrison, C. J. Newbold, Eleanor Jones, Hilary J. Worgan, Dai Grove‐White, Alex Dugdale, Clare Barfoot, Patricia A. Harris, Caroline McG. Argo
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0122268

Culicidae Community Composition and Temporal Dynamics in Guapiaçu Ecological Reserve, Cachoeiras de Macacu, Rio de Janeiro, Brazil
Cited by: 28
Author(s): Jerônimo Alencar, Cecília Ferreira de Mello, Anthony Érico Guimarães, Hélcio R. Gil-Santana, Júlia dos Santos Silva, J Mallet, Raquel M. Gleiser
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0111889

Differences in Life-Histories Refute Ecological Equivalence of Cryptic Species and Provide Clues to the Origin of Bathyal Halomonhystera (Nematoda)
Cited by: 24
Author(s): Jelle Van Campenhout, Sofie Derycke, Tom Moens, Ann Vanreusel
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-021-89896-9

Alterations in gut microbiota linked to provenance, sex, and chronic wasting disease in white-tailed deer (Odocoileus virginianus)
Cited by: 12
Author(s): David Minich, Christopher Madden, Morgan V. Evans, Gregory A. Ballash, Daniel J. Barr, Keith P. Poulsen, Patricia M. Dennis, Vanessa L. Hale
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0009733

Benthic Composition of a Healthy Subtropical Reef: Baseline Species-Level Cover, with an Emphasis on Algae, in the Northwestern Hawaiian Islands
Cited by: 53
Author(s): Peter S. Vroom, Cristi L. Braun
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-021-92796-7

Minor alterations in the intestinal microbiota composition upon Rotavirus infection do not affect susceptibility to DSS colitis
Cited by: 2
Author(s): Kedir Hussen Hamza, Emma Dunér, Isabel Ulmert, Armando Arias, Daniel Sorobetea, Katharina Lahl
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0197502

Enhanced transfer of organic matter to higher trophic levels caused by ocean acidification and its implications for export production: A mass balance approach
Cited by: 4
Author(s): Tim Boxhammer, Jan Taucher, Lennart T. Bach, Eric P. Achterberg, María Algueró-Muñiz, Jessica Bellworthy, Jan Czerny, Mario Espósito, Mathias Haunost, Dana Hellemann, Andrea Ludwig, Jaw Chuen Yong, Maren Zark, Ulf Riebesell, Leif G. Anderson
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0187650

Oil palm monoculture induces drastic erosion of an Amazonian forest mammal fauna
Cited by: 45
Author(s): Ana Cristina Mendes‐Oliveira, Carlos A. Peres, Paula Cristina Rodrigues de Almeida Maués, Geovana Linhares de Oliveira, Ivo Gabriel Barros Mineiro, Susanne Lúcia Silva de Maria, Renata de Lima
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0176419

Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea
Cited by: 110
Author(s): Marta Pascual, Borja Rives, Celia Schunter, Enrique Macpherson
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.02776-19

Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities
Cited by: 68
Author(s): Paul Carini, Manuel Delgado‐Baquerizo, Eve‐Lyn S. Hinckley, Hannah Holland‐Moritz, Tess E. Brewer, Garrett Rue, Caihong Vanderburgh, Diane M. McKnight, Noah Fierer
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02780-19

Gut Feelings Begin in Childhood: the Gut Metagenome Correlates with Early Environment, Caregiving, and Behavior
Cited by: 32
Author(s): Jessica Flannery, Keaton Stagaman, Adam R. Burns, Roxana J. Hickey, Leslie E. Roos, Ryan J. Giuliano, Philip A. Fisher, Thomas J. Sharpton
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0118390

Large-Scale Geographic Variation in Distribution and Abundance of Australian Deep-Water Kelp Forests
Cited by: 63
Author(s): Ezequiel M. Marzinelli, Stefan B. Williams, Russell C. Babcock, Neville S. Barrett, Craig R. Johnson, Alan Jordan, Gary A. Kendrick, Oscar Pizarro, Dan Smale, Peter D. Steinberg
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0139848

Community Structure and Function of Amphibian Skin Microbes: An Experiment with Bullfrogs Exposed to a Chytrid Fungus
Cited by: 73
Author(s): Jenifer B. Walke, Matthew H. Becker, Stephen C. Loftus, Leanna House, Thais L. Teotonio, Kevin P. C. Minbiole, Lisa K. Belden
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0249613

Multisite evaluation of phenotypic plasticity for specialized metabolites, some involved in carrot quality and disease resistance
Cited by: 6
Author(s): Wilfried Chevalier, Sitti-Anlati Moussa, Miguel Medeiros Netto Ottoni, Cécile Dubois-Laurent, Sébastien Huet, Christophe Aubert, Elsa Desnoues, B. Navez, V. Cottet, Guillaume Chalot, Michel Jost, Laure Barrot, Gerald Freymark, Maarten Uittenbogaard, François Chaniet, Anita Suel, Marie-Hélène Bouvier Merlet, Latifa Hamama, Valérie Le Clerc, Mathilde Briard, Didier Peltier, Emmanuel Geoffriau
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0205307

Burn injury alters the intestinal microbiome’s taxonomic composition and functional gene expression
Cited by: 24
Author(s): Nadine Beckmann, Amanda M. Pugh, Charles C. Caldwell
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0222182

Can we teach a fish how to eat? The impact of bottom and surface feeding on survival and growth of hatchery-reared sea trout parr (Salmo trutta trutta L.) in the wild
Cited by: 5
Author(s): Tomasz Krepski, Robert Czerniawski
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0049437

Effects of Reef Proximity on the Structure of Fish Assemblages of Unconsolidated Substrata
Cited by: 28
Author(s): Arthur L. Schultz, Hamish A. Malcolm, Daniel J Bucher, Stephen Smith
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0027103

Rapid Biodiversity Assessment and Monitoring Method for Highly Diverse Benthic Communities: A Case Study of Mediterranean Coralligenous Outcrops
Cited by: 63
Author(s): Silvija Kipson, Maïa Fourt, Núria Teixidó, Emma Cebrián, Edgar Casas, Enric Ballesteros, Míkel Zabala, Joaquim Garrabou
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0187935

Contrasts in the marine ecosystem of two Macaronesian islands: A comparison between the remote Selvagens Reserve and Madeira Island
Cited by: 25
Author(s): Alan M. Friedlander, Enric Ballesteros, Sabrina Clemente, Emanuel João Gonçalves, Andy Estep, Paul Rose, Enric Sala
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.02089-20

Biotic Interactions Are More Important than Propagule Pressure in Microbial Community Invasions
Cited by: 12
Author(s): Michaeline B. N. Albright, Sanna Sevanto, La Verne Gallegos‐Graves, John Dunbar
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12937-018-0331-4

High phosphorus intake and gut-related parameters – results of a randomized placebo-controlled human intervention study
Cited by: 28
Author(s): Ulrike Trautvetter, Amélia Camarinha‐Silva, Gerhard Jahreis, Stefan Lorkowski, Michael Glei
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0090223

Isolation and Identification of Oedogonium Species and Strains for Biomass Applications
Cited by: 43
Author(s): Rebecca Lawton, Rocky de Nys, Stephen Skinner, Nicholas A. Paul
Software Mentions: 1
Published: over 12 years ago

10.1128/mBio.03456-20

SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia
Cited by: 21
Author(s): J.K. Everett, Pascha Hokama, Aoife M. Roche, Shantan Reddy, Young Sun Hwang, Lyanna R. Kessler, Abigail Glascock, Yize Li, Jillian N. Whelan, Susan R. Weiss, Scott Sherrill-Mix, Kevin D. McCormick, Samantha A. Whiteside, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Ronald G. Collman, Frederic D. Bushman
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0044859

Macroalgal Extracts Induce Bacterial Assemblage Shifts and Sublethal Tissue Stress in Caribbean Corals
Cited by: 55
Author(s): Kathleen M. Morrow, Raphael Ritson‐Williams, Cliff Ross, Mark R. Liles, Valerie J. Paul
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0238173

Changes in reflectance of rice seedlings during planthopper feeding as detected by digital camera: Potential applications for high-throughput phenotyping
Cited by: 6
Author(s): Finbarr G. Horgan, Artzai Jauregui, Ainara Peñalver‐Cruz, Eduardo Crisol‐Martínez, Carmencita C. Bernal
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.4693

Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study
Cited by: 73
Author(s): Christopher J. Stewart, Thomas A. Auchtung, Nadim J. Ajami, Kenia M. Velasquez, Daniel P. Smith, Richard De La Garza, Ramiro Salas, Joseph F. Petrosino
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0254172

In-vivo impact of common cosmetic preservative systems in full formulation on the skin microbiome
Cited by: 7
Author(s): Barry Murphy, Michael Hoptroff, David H. Arnold, Richard Eccles, Stuart Campbell-Lee
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0109280

In Situ Mortality Experiments with Juvenile Sea Bass (Dicentrarchus labrax) in Relation to Impulsive Sound Levels Caused by Pile Driving of Windmill Foundations
Cited by: 15
Author(s): E. Debusschere, Bert De Coensel, Anna Bajek, Dick Botteldooren, Kristian Hostens, Jan Vanaverbeke, Sofie Vandendriessche, K. Van Ginderdeuren, Magda Vincx, S. Degraer
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0074077

Are Hotspots Always Hotspots? The Relationship between Diversity, Resource and Ecosystem Functions in the Arctic
Cited by: 39
Author(s): Heike Link, Dieter Piepenburg, Philippe Archambault
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0220130

Acidification-induced cellular changes in Symbiodinium isolated from Mussismilia braziliensis
Cited by: 4
Author(s): Lilian Jorge Hill, Wladimir Costa Paradas, Maria Julia Willemes, Miria G. Pereira, Paulo S. Salomon, Rodrigo Mariath, Rodrigo L. Moura, Geórgia C. Atella, Marcos Farina, Gilberto M. Amado‐Filho, Leonardo T. Salgado
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.01028-21

Dietary Fiber Hierarchical Specificity: the Missing Link for Predictable and Strong Shifts in Gut Bacterial Communities
Cited by: 29
Author(s): Thaísa Moro Cantu-Jungles, Nuseybe Bulut, Eponine Chambry, Andréa Caroline Ruthes, Marcello Iacomini, Ali Keshavarzian, Timothy A. Johnson, Bruce R. Hamaker
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00771-21

Obesity-Related Gut Microbiota Aggravates Alveolar Bone Destruction in Experimental Periodontitis through Elevation of Uric Acid
Cited by: 32
Author(s): Keisuke Sato, Kyoko Yamazaki, Tamotsu Kato, Yumiko Nakanishi, Takahiro Tsuzuno, Mai Yokoji-Takeuchi, Miki Yamada-Hara, Nobuaki Miura, Shujiro Okuda, Hiroshi Ohno, Kazuhisa Yamazaki
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00751-21

Host Species and Geography Differentiate Honeybee Gut Bacterial Communities by Changing the Relative Contribution of Community Assembly Processes
Cited by: 24
Author(s): Yuan Ge, Zhongwang Jing, Qingyun Diao, Ji‐Zheng He, Yongjun Liu
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00846-21

Tobacco Root Endophytic Arthrobacter Harbors Genomic Features Enabling the Catabolism of Host-Specific Plant Specialized Metabolites
Cited by: 11
Author(s): Tomohisa Shimasaki, Sachiko Masuda, Ruben Garrido‐Oter, Takashi Kawasaki, Yosuke Aoki, Arisa Shibata, Wataru Suda, Ken Shirasu, Kazufumi Yazaki, Ryohei Thomas Nakano, Akifumi Sugiyama
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0029359

Metabolomic Assessment of Induced and Activated Chemical Defence in the Invasive Red Alga Gracilaria vermiculophylla
Cited by: 92
Author(s): Göran M. Nylund, Florian Weinberger, Martin Rempt, Georg Pohnert
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0016357

Characteristics of the Mesophotic Megabenthic Assemblages of the Vercelli Seamount (North Tyrrhenian Sea)
Cited by: 123
Author(s): Marzia Bo, Marco Bertolino, Mireno Borghini, Michela Castellano, Anabella Covazzi Harriague, Cristina Gioia Di Camillo, G.P. Gasparini, Cristina Misic, Paolo Pedrini, Antonio Pusceddu, Katrin Schröeder, Giorgio Bavestrello
Software Mentions: 1
Published: over 15 years ago

10.1128/mBio.00975-21

Dynamic Colonization of Microbes and Their Functions after Fecal Microbiota Transplantation for Inflammatory Bowel Disease
Cited by: 22
Author(s): Nathaniel D. Chu, Jessica W Crothers, Le T T Nguyen, Sean M. Kearney, Mark Smith, Zain Kassam, Cheryl Collins, Ramnik J. Xavier, Peter L. Moses, Eric J. Alm
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.00423-21

Poor Competitiveness of Bradyrhizobium in Pigeon Pea Root Colonization in Indian Soils
Cited by: 5
Author(s): Danteswari Chalasani, Anirban Basu, Sarma V. S. R. N. Pullabhotla, Beatriz Jorrín, Andrew L. Neal, Philip S. Poole, Appa Rao Podile, Andrzej Tkacz
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.01155-21

Ileal Bile Acid Transporter Inhibitor Improves Hepatic Steatosis by Ameliorating Gut Microbiota Dysbiosis in NAFLD Model Mice
Cited by: 12
Author(s): Masahiro Morimoto, Shinya Fukunishi, Takashi Nakano, Takaaki Ueno, Kazuhide Higuchi, Akira Asai
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.10602

Effects of oxygen exposure on relative nucleic acid content and membrane integrity in the human gut microbiota
Cited by: 3
Author(s): Mariia Taguer, Ophélie Quillier, Corinne F. Maurice
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0084739

Flood Impacts in Keppel Bay, Southern Great Barrier Reef in the Aftermath of Cyclonic Rainfall
Cited by: 50
Author(s): Alison Jones, Ray Berkelmans
Software Mentions: 1
Published: over 12 years ago

10.1128/mSphere.00085-17

Bacterial Community Composition Associated with Pyrogenic Organic Matter (Biochar) Varies with Pyrolysis Temperature and Colonization Environment
Cited by: 44
Author(s): Zhongmin Dai, Albert Barberán, Yong Li, Philip C. Brookes, Jianming Xu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0063693

Temporal Variations in Metabolic and Autotrophic Indices for Acropora digitifera and Acropora spicifera – Implications for Monitoring Projects
Cited by: 3
Author(s): Saskia Hinrichs, Nicole L. Patten, Anya M. Waite
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0146053

Quantifying the Adaptive Cycle
Cited by: 23
Author(s): David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance Gunderson, Olle Hjerne, Monika Winder
Software Mentions: 1
Published: over 10 years ago

10.1128/mSphere.00243-17

Butyrate Supplementation at High Concentrations Alters Enteric Bacterial Communities and Reduces Intestinal Inflammation in Mice Infected with Citrobacter rodentium
Cited by: 78
Author(s): Janelle A. Jiminez, Trina C. Uwiera, D. Wade Abbott, Richard R. E. Uwiera, G. Douglas Inglis
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.804

Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities
Cited by: 63
Author(s): Kristin Aleklett, Jonathan W. Leff, Noah Fierer, Miranda M. Hart
Software Mentions: 1
Published: over 11 years ago

10.3390/nu13010152

The Combined Effects of Magnesium Oxide and Inulin on Intestinal Microbiota and Cecal Short-Chain Fatty Acids
Cited by: 4
Author(s): Kanako Omori, Hiroki Miyakawa, Aya Watanabe, Yuki Nakayama, Yijin Lyu, Natsumi Ichikawa, Hiroyuki Sasaki, Shigenobu Shibata
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12103020

Alterations in the Intestinal Morphology, Gut Microbiota, and Trace Mineral Status Following Intra-Amniotic Administration (Gallus gallus) of Teff (Eragrostis tef) Seed Extracts
Cited by: 19
Author(s): Johnathon Carboni, Spenser Reed, Nikolai Kolba, Adi Eshel, Omry Koren, Elad Tako
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0075873

Spatial and Temporal Patterns of Eastern Australia Subtropical Coral Communities
Cited by: 23
Author(s): Steven Dalton, George Roff
Software Mentions: 1
Published: almost 13 years ago

10.7717/peerj.4180

The first observations ofIschnochiton(Mollusca, Polyplacophora) movement behaviour, with comparison between habitats differing in complexity
Cited by: 2
Author(s): Kiran Liversage, Kirsten Benkendorff
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0130116

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation
Cited by: 48
Author(s): Maryam Yazdani Foshtomi, Ulrike Braeckman, Sofie Derycke, Melanie Sapp, D. Van Gansbeke, Koen Sabbe, Anne Willems, Magda Vincx, Jan Vanaverbeke
Software Mentions: 1
Published: about 11 years ago

10.1128/mSphere.00531-17

Reproductive System Symbiotic Bacteria Are Conserved between Two Distinct Populations of Euprymna scolopes from Oahu, Hawaii
Cited by: 11
Author(s): Allison H. Kerwin, Spencer V. Nyholm
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0166679

The Farther the Better: Effects of Multiple Environmental Variables on Reef Fish Assemblages along a Distance Gradient from River Influences
Cited by: 19
Author(s): Leonardo Mitrano Neves, Tatiana P. Teixeira-Neves, Guilherme H. Pereira-Filho, Francisco Gerson Araújo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0020370

Patterns of Coral Disease across the Hawaiian Archipelago: Relating Disease to Environment
Cited by: 74
Author(s): Greta S. Aeby, Gareth J. Williams, Erik C. Franklin, Jean C. Kenyon, Evelyn F. Cox, S. L. Coles, Thierry M. Work
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0080307

Till Death Do Us Part: Stable Sponge-Bacteria Associations under Thermal and Food Shortage Stresses
Cited by: 46
Author(s): Lucía Pita, Patrick M. Erwin, Xavier Turon, Susanna López‐Legentil
Software Mentions: 1
Published: over 12 years ago

10.7717/peerj.4975

Dynamic succession of substrate-associated bacterial composition and function duringGanoderma lucidumgrowth
Cited by: 13
Author(s): Bo Zhang, Lijuan Yan, Qiang Li, Jie Zou, Hao Tan, Wenfeng Tan, Weihong Peng, Xin Li, Xiaoping Zhu
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphere.00219-18

Rectal and Naris Swabs: Practical and Informative Samples for Analyzing the Microbiota of Critically Ill Patients
Cited by: 10
Author(s): Saumya Bansal, Julie T. Nguyen, Aleksandra Leligdowicz, Yu Zhang, Kevin C. Kain, Daniel R. Ricciuto, Bryan Coburn
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0198305

Effects of water decontamination methods and bedding material on the gut microbiota
Cited by: 27
Author(s): Willie A Bidot, Aaron C. Ericsson, Craig L. Franklin
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSphere.00148-18

Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units
Cited by: 137
Author(s): Sydney I. Glassman, Jennifer B. H. Martiny
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0103416

Community Turnover of Wood-Inhabiting Fungi across Hierarchical Spatial Scales
Cited by: 23
Author(s): Nerea Abrego, Gonzalo García‐Baquero, Panu Halme, Otso Ovaskainen, Isabel Salcedo
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0094593

Documenting the Density of Subtidal Marine Debris across Multiple Marine and Coastal Habitats
Cited by: 37
Author(s): Stephen Smith, Robert J. Edgar
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0019402

Adaptive Traits Are Maintained on Steep Selective Gradients despite Gene Flow and Hybridization in the Intertidal Zone
Cited by: 84
Author(s): Gerardo I. Zardi, Katy R. Nicastro, Fernando Cánovas, Joana F. Costa, Ester A. Serrão, Gareth A. Pearson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0044199

Pseudomonas aeruginosa Exhibits Frequent Recombination, but Only a Limited Association between Genotype and Ecological Setting
Cited by: 111
Author(s): Timothy J. Kidd, Stephen Ritchie, Kay A. Ramsay, Keith Grimwood, Scott C. Bell, Paul B. Rainey
Software Mentions: 1
Published: almost 14 years ago

10.3390/nu13030940

Obeticholic Acid Inhibits Anxiety via Alleviating Gut Microbiota-Mediated Microglia Accumulation in the Brain of High-Fat High-Sugar Diet Mice
Cited by: 14
Author(s): Liming Wu, Yuqiu Han, Zhipeng Zheng, Shuai Zhu, Jun Chen, Yunpeng Yao, Siqing Yue, Andreas Teufel, Honglei Weng, Lanjuan Li, Baohong Wang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0200411

Spatial variability in the diversity and structure of faunal assemblages associated with kelp holdfasts (Laminaria hyperborea) in the northeast Atlantic
Cited by: 24
Author(s): Harry Teagle, Pippa J. Moore, Helen L. Jenkins, Dan A. Smale
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphere.00358-19

Rectal Swabs from Critically Ill Patients Provide Discordant Representations of the Gut Microbiome Compared to Stool Samples
Cited by: 25
Author(s): Katherine Fair, D.G. Dunlap, Adam Fitch, Tatiana Bogdanovich, Barbara A. Methé, Alison Morris, Bryan J. McVerry, Georgios D. Kitsios
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0231820

The MacKinnon Lists Technique: An efficient new method for rapidly assessing biodiversity and species abundance ranks in the marine environment
Cited by: 2
Author(s): Lydia Luise Bach, David M. Bailey, Euan S. Harvey, Ross MacLeod
Software Mentions: 1
Published: over 6 years ago

10.3390/nu13030846

Barley Leaf Insoluble Dietary Fiber Alleviated Dextran Sulfate Sodium-Induced Mice Colitis by Modulating Gut Microbiota
Cited by: 35
Author(s): Mi Tian, Daotong Li, Chen Ma, Yao Feng, Xiaosong Hu, Fang Chen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0100714

Up, Down, and All Around: Scale-Dependent Spatial Variation in Rocky-Shore Communities of Fildes Peninsula, King George Island, Antarctica
Cited by: 37
Author(s): Nelson Valdivia, María José Fernández Díaz, Jorge Holtheuer, Ignacio Garrido, Pirjo Huovinen, Iván Gómez
Software Mentions: 1
Published: about 12 years ago

10.1128/mSphere.00763-19

Systematic Analysis of Impact of Sampling Regions and Storage Methods on Fecal Gut Microbiome and Metabolome Profiles
Cited by: 33
Author(s): Yongsheng Liang, Tianyu Dong, Minjian Chen, Lianping He, Tingzhang Wang, Xingyin Liu, Hang Chang, Jian‐Hua Mao, Bo Hang, Antoine M. Snijders, Yankai Xia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0001548

Baselines and Degradation of Coral Reefs in the Northern Line Islands
Cited by: 710
Author(s): Stuart A. Sandin, Jennifer E. Smith, Edward E. DeMartini, Elizabeth A. Dinsdale, Simon D. Donner, Alan M. Friedlander, Talina Konotchick, Maria Celia D. Malay, James E. Maragos, David Obura, Olga Pantos, Gustav Paulay, Morgan Richie, Forest Rohwer, Robert E. Schroeder, Sheila Walsh, Jeremy B. C. Jackson, Nancy Knowlton, Enric Sala
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0022591

Food-Web Structure of Seagrass Communities across Different Spatial Scales and Human Impacts
Cited by: 68
Author(s): Marta Coll, Allison L. Schmidt, Tamara N. Romanuk, Heike K. Lotze
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0010402

Dopamine Induces Optical Changes in the Cichlid Fish Lens
Cited by: 9
Author(s): J. Marcus Schartau, Ronald H. H. Kröger, Bodil Sjögreen
Software Mentions: 1
Published: over 16 years ago

10.1128/mSphere.00791-19

Bifidobacterium longum R0175 Protects Rats against <scp>d</scp> -Galactosamine-Induced Acute Liver Failure
Cited by: 22
Author(s): Kaicen Wang, Longxian Lv, Yan Ren, Qiangqiang Wang, Huiyong Jiang, Wenshuai Wu, Yating Li, Jianzhong Ye, Jingjing Wu, Liya Yang, Xiaoyuan Bian, Xianwan Jiang, Yao Lu, Jiao-Jiao Xie, Jian Shen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0114132

Genetic and Ontogenetic Variation in an Endangered Tree Structures Dependent Arthropod and Fungal Communities
Cited by: 7
Author(s): Benjamin J. Gosney, Julianne M. O’Reilly-Wapstra, Lynne G. Forster, RC Barbour, Glenn R. Iason, Brad M. Potts
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0153184

Recruitment Variability of Coral Reef Sessile Communities of the Far North Great Barrier Reef
Cited by: 5
Author(s): Heidi M. Luter, Alan Duckworth, Carsten Wolff, Elizabeth Evans-Illidge, Steve W Whalan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0243077

Gut mycobiomes are altered in people with type 2 Diabetes Mellitus and Diabetic Retinopathy
Cited by: 51
Author(s): Rajagopalaboopathi Jayasudha, Taraprasad Das, Sama Kalyana Chakravarthy, Gumpili Sai Prashanthi, Archana Bhargava, Mudit Tyagi, Padmaja Kumari Rani, Rajeev Reddy Pappuru, Sisinthy Shivaji
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0245399

Gut microbiota profile of Indonesian stunted children and children with normal nutritional status
Cited by: 11
Author(s): Ingrid S. Surono, Dian Widiyanti, Pratiwi Dyah Kusumo, Koen Venema
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0097244

A Role for Ultrasonic Vocalisation in Social Communication and Divergence of Natural Populations of the House Mouse (Mus musculus domesticus)
Cited by: 63
Author(s): Sophie von Merten, Svenja Hoier, Christine Pfeifle, Diethard Tautz
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0118810

Evaluation of 3-Dimensional Superimposition Techniques on Various Skeletal Structures of the Head Using Surface Models
Cited by: 56
Author(s): Nikolaos Gkantidis, Michael Schauseil, Pawel Pazera, Berna Zorkun, Christos Katsaros, Bjöern Ludwig
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0160497

Handling and Storage Procedures Have Variable Effects on Fatty Acid Content in Fishes with Different Lipid Quantities
Cited by: 27
Author(s): Martina D. Rudy, Martin J. Kainz, Martín Graeve, Stefanie M. Colombo, Michael T. Arts
Software Mentions: 1
Published: about 10 years ago

10.1128/mSphere.00306-20

Bacterial Community Structure Dynamics in Meloidogyne incognita -Infected Roots and Its Role in Worm-Microbiome Interactions
Cited by: 10
Author(s): Timur Yergaliyev, Rivka Alexander-Shani, Hana Dimerets, Shimon Pivonia, David Bird, Shimon Rachmilevitch, Amir Szitenberg
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0104623

Bacterial Community Affects Toxin Production by Gymnodinium catenatum
Cited by: 15
Author(s): Maria E. Albinsson, Andrew P. Negri, Susan I. Blackburn, Christopher J. S. Bolch
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0038124

Comparing the Invasibility of Experimental “Reefs” with Field Observations of Natural Reefs and Artificial Structures
Cited by: 93
Author(s): Katherine A. Dafforn, Tim M. Glasby, Emma L. Johnston
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0110999

Evidence of Niche Partitioning under Ontogenetic Influences among Three Morphologically Similar Siluriformes in Small Subtropical Streams
Cited by: 14
Author(s): Karine Orlandi Bonato, Clarice Bernhardt Fialho
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0224195

Effect of aridity and dune type on rhizosphere soil bacterial communities of Caragana microphylla in desert regions of northern China
Cited by: 14
Author(s): Jiyun Gao, Yang Luo, Yali Wei, Yongji Huang, Hua Zhang, Wenliang He, Hongmei Sheng, Lu An
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0251790

Interspecific variation and functional traits of the gut microbiome in spiders from the wild: The largest effort so far
Cited by: 7
Author(s): Kaomud Tyagi, Inderjeet Tyagi, Vikas Kumar
Software Mentions: 1
Published: about 5 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292