cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1016/j.bbi.2016.04.003

Brain injury induces specific changes in the caecal microbiota of mice via altered autonomic activity and mucoprotein production
Cited by: 244
Author(s): Ashley Houlden, Marie Goldrick, David Brough, E.S. Vizi, Nikolett Lénárt, Bernadett Martinecz, Ian S. Roberts, Ádám Dénes
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41416-020-01253-1

Transitions in oral and gut microbiome of HPV+ oropharyngeal squamous cell carcinoma following definitive chemoradiotherapy (ROMA LA-OPSCC study)
Cited by: 18
Author(s): Marc Oliva, Pierre H. H. Schneeberger, Victor Rey, Matthew Cho, Rachel Taylor, Aaron Richard Hansen, Kenneth W. Taylor, Andrew Bayley, Andrew Hope, Scott V. Bratman, Jolie Ringash, Simron Singh, Ilan Weinreb, Bayardo Perez-Ordoñez, John Waldron, Wei Xu, David S. Guttman, Lillian L. Siu, Bryan Coburn, Anna Spreafico
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01948

16S rRNA Gene Sequencing Reveals a Shift in the Microbiota of Diaphorina citri During the Psyllid Life Cycle
Cited by: 36
Author(s): Lixue Meng, Xiaoyang Li, Xiao-Qin Cheng, Hongyu Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.00682

An Assessment of Climate Induced Increase in Soil Water Availability for Soil Bacterial Communities Exposed to Long-Term Differential Phosphorus Fertilization
Cited by: 2
Author(s): Kate C. Randall, Fiona Brennan, Nicholas Clipson, Rachel Creamer, Bryan S. Griffiths, Sean Storey, Evelyn Doyle
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-018-1344-0

Exploring the roles of and interactions among microbes in dry co-digestion of food waste and pig manure using high-throughput 16S rRNA gene amplicon sequencing
Cited by: 45
Author(s): Yan Jiang, Conor Dennehy, Peadar G. Lawlor, Zhenhu Hu, Matthew S. McCabe, Paul Cormican, Xinmin Zhan, Gillian E. Gardiner
Software Mentions: 1
Published: over 7 years ago

10.1186/s42523-019-0002-6

Distinct microbiotas of anatomical gut regions display idiosyncratic seasonal variation in an avian folivore
Cited by: 19
Author(s): Sergei V. Drovetski, Michael O’Mahoney, Kenan O. Matterson, Brian K. Schmidt, Gary R. Graves
Software Mentions: 1
Published: over 7 years ago

10.3390/biom11030478

Selective Fatty Acid Retention and Turnover in the Freshwater Amphipod Pallaseopsis quadrispinosa
Cited by: 7
Author(s): Sami J. Taipale, Erwin Kers, Elina Peltomaa, John Loehr, Martin J. Kainz
Software Mentions: 1
Published: over 5 years ago

10.1186/s42523-021-00127-y

Microbial taxa in dust and excreta associated with the productive performance of commercial meat chicken flocks
Cited by: 7
Author(s): Yugal Raj Bindari, Robert J. Moore, Thi Thu Hao Van, Stephen W. Walkden‐Brown, Priscilla F. Gerber
Software Mentions: 1
Published: almost 5 years ago

10.1155/2020/1673602

Recovery Dynamics of Intestinal Bacterial Communities of CCl4-Treated Mice with or without Mesenchymal Stem Cell Transplantation over Different Time Points
Cited by: 1
Author(s): Yanping Xu, Hua Zha, Wenyi Chen, Hong Cao, Lanjuan Li
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/6587136

Altered Gut Microbiota and Shift in<i>Bacteroidetes</i>between Young Obese and Normal-Weight Korean Children: A Cross-Sectional Observational Study
Cited by: 19
Author(s): Saeam Shin, Ky Young Cho
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/5554991

Roux-en-Y Gastric Bypass Improved Insulin Resistance via Alteration of the Human Gut Microbiome and Alleviation of Endotoxemia
Cited by: 4
Author(s): Qiankun Shi, Qian Wang, Hui Zhong, Dehai Li, Shuxing Yu, Hengwen Yang, Cunchuan Wang, Zhinan Yin
Software Mentions: 1
Published: about 5 years ago

10.1155/2013/491091

Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments
Cited by: 40
Author(s): Ramona Marasco, Eleonora Rolli, Marco Fusi, Ameur Chérif, A.F. Abou-Hadid, Usama El-Bahairy, Sara Borin, C. Sorlini, Daniele Daffonchio
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2016.02128

Nutritional Models of Experimentally-Induced Subacute Ruminal Acidosis (SARA) Differ in Their Impact on Rumen and Hindgut Bacterial Communities in Dairy Cows
Cited by: 67
Author(s): J.C. Plaizier, Shucong Li, Hein Min Tun, Ehsan Khafipour
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.02047

Interaction Between Conservation Tillage and Nitrogen Fertilization Shapes Prokaryotic and Fungal Diversity at Different Soil Depths: Evidence From a 23-Year Field Experiment in the Mediterranean Area
Cited by: 45
Author(s): Gaia Piazza, Laura Ercoli, Marco Nuti, Elisa Pellegrino
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.00053

Long-Term Effects of Multi-Drug-Resistant Tuberculosis Treatment on Gut Microbiota and Its Health Consequences
Cited by: 26
Author(s): Jinyu Wang, Ke Xiong, Shanliang Zhao, Chao Zhang, Jianwen Zhang, Lei Xu, Aiguo Ma
Software Mentions: 1
Published: over 6 years ago

10.1155/2015/981829

Bacterial Diversity and Bioremediation Potential of the Highly Contaminated Marine Sediments at El-Max District (Egypt, Mediterranean Sea)
Cited by: 13
Author(s): Ranya Amer, Francesca Mapelli, Hamada M. El Gendi, Marta Barbato, Doaa A. Goda, A. Corsini, L. Cavalca, Marco Fusi, Sara Borin, Daniele Daffonchio, Yasser R. Abdel-Fattah
Software Mentions: 1
Published: over 11 years ago

10.1155/2015/153851

The Date Palm Tree Rhizosphere Is a Niche for Plant Growth Promoting Bacteria in the Oasis Ecosystem
Cited by: 35
Author(s): Raoudha Ferjani, Ramona Marasco, Eleonora Rolli, Hanène Chérif, Ameur Chérif, Maher Gtari, Abdellatif Boudabous, Daniele Daffonchio, Hadda-Imène Ouzari
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2017.02494

Fight Fungi with Fungi: Antifungal Properties of the Amphibian Mycobiome
Cited by: 46
Author(s): Patrick J. Kearns, Sarah Fischer, Saioa Fernández-Beaskoetxea, Caitlin R. Gabor, Jaime Bosch, Jennifer L. Bowen, Michael F. Tlusty, Douglas C. Woodhams
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.02693

Regrowth of Microcosm Biofilms on Titanium Surfaces After Various Antimicrobial Treatments
Cited by: 12
Author(s): Qi Han, Yaling Jiang, Bernd W. Brandt, Jiamin Yang, Yu Chen, M.J. Buijs, Wim Crielaard, Lei Cheng, Dongmei Deng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-020-0732-1

Fungal communities decline with urbanization—more in air than in soil
Cited by: 43
Author(s): Nerea Abrego, Brittni Joette Crosier, Panu Somervuo, Natalia V. Ivanova, Arusyak Abrahamyan, Ali A. Abdi, Karoliina Hämäläinen, Kaisa Junninen, Minna Maunula, Jenna Purhonen, Otso Ovaskainen
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.01319

Soil Photosynthetic Microbial Communities Mediate Aggregate Stability: Influence of Cropping Systems and Herbicide Use in an Agricultural Soil
Cited by: 31
Author(s): Olivier Crouzet, Laurent Consentino, Jean-Pierre Pétraud, Christelle Marrauld, Jean‐Pierre Aguer, Sylvie Bureau, Carine Le Bourvellec, Line Touloumet, Annette Bérard
Software Mentions: 1
Published: about 7 years ago

10.3390/biology10090905

Vairimorpha (Nosema) ceranae Infection Alters Honey Bee Microbiota Composition and Sustains the Survival of Adult Honey Bees
Cited by: 9
Author(s): Yakun Zhang, Meiling Su, Long Wang, Shaokang Huang, Songkun Su, Wei‐Fone Huang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2016.01377

Unexpectedly High Beta-Diversity of Root-Associated Fungal Communities in the Bolivian Andes
Cited by: 25
Author(s): Christopher J. Barnes, Carla Maldonado, Tobias Guldberg Frøslev, Alexandre Antonelli, Nina Rønsted
Software Mentions: 1
Published: almost 10 years ago

10.3390/biology9120420

Endophytic Fungi as Potential Biological Control Agents against Grapevine Trunk Diseases in Alentejo Region
Cited by: 22
Author(s): Angela Billar de Almeida, Jonathan Concas, Maria Doroteia Campos, Patrick Materatski, Carla Varanda, Mariana Patanita, Sergio Murolo, Gianfranco Romanazzi, Maria do Rosário Félix
Software Mentions: 1
Published: over 5 years ago

10.3390/biology10060457

Parasites, Drugs and Captivity: Blastocystis-Microbiome Associations in Captive Water Voles
Cited by: 5
Author(s): Emma L. Betts, Sumaiya Hoque, Lucy Torbe, J. R. Bailey, Hazel Ryan, Karen Toller, Vicki Breakell, Angus I. Carpenter, Alex Diana, Eleni Matechou, Eleni Gentekaki, Anastasios D. Tsaousis
Software Mentions: 1
Published: about 5 years ago

10.1186/s13293-020-00346-z

Analysis of sex differences in dietary copper-fructose interaction-induced alterations of gut microbial activity in relation to hepatic steatosis
Cited by: 5
Author(s): Ming Song, Fang Yuan, Xiaohong Li, Xipeng Ma, Xinmin Yin, Eric C. Rouchka, Xiang Zhang, Zhongbin Deng, Russell A. Prough, Craig J. McClain
Software Mentions: 1
Published: over 5 years ago

10.1186/s12575-020-00131-7

Nasopharyngeal Microbiota Profiling of SARS-CoV-2 Infected Patients
Cited by: 68
Author(s): Flavio De Maio, Brunella Posteraro, Francesca Romana Ponziani, Paola Cattani, Antonio Gasbarrini, Maurizio Sanguinetti
Software Mentions: 1
Published: about 6 years ago

10.1038/s41396-019-0574-x

Mountain biodiversity and ecosystem functions: interplay between geology and contemporary environments
Cited by: 55
Author(s): Ang Hu, Jianjun Wang, Hang Sun, Bin Niu, Guicai Si, Jian Wang, Chih-Fu Yeh, Xin‐Xin Zhu, Xiancai Lu, Jizhong Zhou, Yongping Yang, Mei Ren, Yilun Hu, Hailiang Dong, Gengxin Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s42523-021-00109-0

Captivity reduces diversity and shifts composition of the Brown Kiwi microbiome
Cited by: 28
Author(s): Priscilla A San Juan, Isabel Castro, Manpreet K. Dhami
Software Mentions: 1
Published: about 5 years ago

10.1242/bio.201411288

Differences in the fatty-acid composition of rodent spermatozoa are associated to levels of sperm competition
Cited by: 19
Author(s): Javier delBarco‐Trillo, Rafael Mateo, Eduardo R. S. Roldán
Software Mentions: 1
Published: over 11 years ago

10.1242/bio.013409

Changes in cell shape are correlated with metastatic potential in murine and human osteosarcomas
Cited by: 60
Author(s): Samanthe M. Lyons, Elaheh Alizadeh, Joshua Mannheimer, Katherine Schuamberg, Jordan Castle, Bryce Schroder, Philip Turk, Douglas H. Thamm, Ashok Prasad
Software Mentions: 1
Published: over 10 years ago

10.1242/bio.045252

First data on microflora of loggerhead sea turtle (<i>Caretta caretta)</i> nests from the coastlines of Sicily (Italy)
Cited by: 10
Author(s): Delia Gambino, Maria Flaminia Persichetti, Antonino Gentile, Marco Arculeo, Giulia Visconti, V. Currò, Giulia Caracappa, Daniela Crucitti, Antonio Piazza, Francesca Mancianti, Simona Nardoni, Domenico Vicari, S. Caracappà
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-019-0555-0

Air mass source determines airborne microbial diversity at the ocean–atmosphere interface of the Great Barrier Reef marine ecosystem
Cited by: 29
Author(s): Stephen Archer, Kevin C. Lee, Tancredi Caruso, Katie King-Miaow, Mike Harvey, Danwei Huang, Benjamin J. Wainwright, Stephen B. Pointing
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-020-0667-6

Uncovering the hidden diversity of litter-decomposition mechanisms in mushroom-forming fungi
Cited by: 43
Author(s): Dimitrios Floudas, Johan Bentzer, Dag Ahrén, Tomas Johansson, Per Persson, Anders Tunlid
Software Mentions: 1
Published: over 6 years ago

10.1242/bio.045591

High levels of floridoside at high salinity link osmoadaptation with bleaching susceptibility in the cnidarian-algal endosymbiosis
Cited by: 17
Author(s): Hagen M. Gegner, Nils Rädecker, Michael A. Ochsenkühn, Marcelle Muniz Barreto, Maren Ziegler, Jessica Reichert, Patrick Schubert, Thomas Wilke, Christian R. Voolstra
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12010087

The Timing Effects of Soy Protein Intake on Mice Gut Microbiota
Cited by: 24
Author(s): Konomi Tamura, Hiroyuki Sasaki, Kazuto Shiga, Hiroki Miyakawa, Shigenobu Shibata
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2015.01008

Bacterial endophyte communities in the foliage of coast redwood and giant sequoia
Cited by: 47
Author(s): Alyssa A. Carrell, A. Carolin Frank
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2019.02397

Species-Specific Differences in the Microbiomes and Organic Exudates of Crustose Coralline Algae Influence Bacterioplankton Communities
Cited by: 13
Author(s): Zachary A. Quinlan, Raphael Ritson‐Williams, Brenna J Carroll, Craig A. Carlson, Craig E. Nelson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41396-019-0486-9

Chemosymbiotic bivalves contribute to the nitrogen budget of seagrass ecosystems
Cited by: 23
Author(s): Ulisse Cardini, Marco Bartoli, Sebastian Lücker, Maria Mooshammer, Julia Polzin, Raymond W. Lee, Vesna Micić, Thilo Hofmann, Miriam Weber, Jillian M. Petersen
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.02001

Assessment of Bacterial Communities Associated With the Skin of Costa Rican Amphibians at La Selva Biological Station
Cited by: 17
Author(s): Juan G. Abarca, Gabriel Vargas, Ibrahim Zuñiga, Steven M. Whitfield, Douglas C. Woodhams, Jacob L. Kerby, Valerie J. McKenzie, Catalina Murillo‐Cruz, Adrián A. Pinto‐Tomás
Software Mentions: 1
Published: almost 8 years ago

10.1007/s10530-017-1634-7

Historical ecology of a biological invasion: the interplay of eutrophication and pollution determines time lags in establishment and detection
Cited by: 39
Author(s): Paolo G. Albano, Ivo Gallmetzer, Alexandra Haselmair, Adam Tomášových, Michael Stachowitsch, Martin Zuschin
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.00729

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea
Cited by: 15
Author(s): Michael F. Graw, Grace D’Angelo, Matthew Borchers, Andrew R. Thurber, Joel E. Johnson, Chuanlun Zhang, Haodong Liu, Frederick S. Colwell
Software Mentions: 1
Published: over 8 years ago

10.3390/biom11010034

Prophylactic Treatment with Vitamins C and B2 for Methotrexate-Induced Gastrointestinal Mucositis
Cited by: 10
Author(s): Ana Rita da Silva Ferreira, Hannah R. Wardill, Rick Havinga, Wim J. E. Tissing, Hermie J. M. Harmsen
Software Mentions: 1
Published: over 5 years ago

10.1186/s42523-021-00081-9

Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits
Cited by: 10
Author(s): Mingyuan Xue, Yunyi Xie, Yifan Zhong, Jianxin Liu, Le Luo Guan, Hui-Zeng Sun
Software Mentions: 1
Published: over 5 years ago

10.1038/s41396-017-0026-4

The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence
Cited by: 64
Author(s): Francesca Mapelli, Ramona Marasco, Marco Fusi, Barbara Scaglia, George Tsiamis, Eleonora Rolli, Stilianos Fodelianakis, Kostas Bourtzis, Stefano Ventura, Fulvia Tambone, Fabrizio Adani, Sara Borin, Daniele Daffonchio
Software Mentions: 1
Published: over 8 years ago

10.1186/s42523-020-00049-1

Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems
Cited by: 18
Author(s): Matthew Barden, Peter Richards‐Rios, Erika Ganda, Luca Lenzi, Richard Eccles, Joseph M. Neary, Jo Oultram, Georgios Oikonomou
Software Mentions: 1
Published: almost 6 years ago

10.1186/s42523-020-00050-8

The microbiota of the surface, dermis and subcutaneous tissue of dog skin
Cited by: 8
Author(s): Rocío García-Fonticoba, Lluís Ferrer, Olga Francino, Anna Cuscó
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.584850

Highly Contaminated Marine Sediments Can Host Rare Bacterial Taxa Potentially Useful for Bioremediation
Cited by: 30
Author(s): Filippo Dell’Anno, Eugenio Rastelli, Michael Tangherlini, Cinzia Corinaldesi, Clementina Sansone, Christophe Brunet, Sergio Balzano, Adrianna Ianora, Luigi Musco, Maria Rita Montereali, Antonio Dell’Anno
Software Mentions: 1
Published: over 5 years ago

10.3897/BDJ.9.e54843

The effect of edaphic factors on the distribution and abundance of ants (Hymenoptera: Formicidae) in Iran
Cited by: 2
Author(s): Mohammad Réza Mohseni, Shahrokh Pashaei Rad
Software Mentions: 1
Published: over 5 years ago

10.1186/s42523-019-0012-4

Looking like the locals - gut microbiome changes post-release in an endangered species
Cited by: 36
Author(s): Rowena Chong, Catherine E. Grueber, Samantha Fox, Phil Wise, Vanessa R. Barrs, Carolyn J. Hogg, Katherine Belov
Software Mentions: 1
Published: almost 7 years ago

10.3897/BDJ.4.e8233

Environmental variability and heavy metal concentrations from five lagoons in the Ionian Sea (Amvrakikos Gulf, W Greece)
Cited by: 5
Author(s): Katerina Vasileiadou, Christina Pavloudi, Ioanna Kalantzi, Eugenia T. Apostolaki, Georgios Chatzigeorgiou, Eva Chatzinikolaou, Evangelos Pafilis, Nikos Papageorgiou, Lucia Fanini, Spyridon Konstas, Nina Fragopoulou, Christos Arvanitidis
Software Mentions: 1
Published: almost 10 years ago

10.3897/BDJ.7.e37968

Fauna of nocturnal moth species collected in a semi-natural grassland at Kanpu-zan in northern Japan
Cited by: 1
Author(s): Masaru Kamikura, Yuzu Sakata
Software Mentions: 1
Published: about 7 years ago

10.1186/s13040-018-0187-3

Knomics-Biota - a system for exploratory analysis of human gut microbiota data
Cited by: 27
Author(s): Daria Efimova, Alexander Tyakht, Anna Popenko, Anatoly Vasilyev, Ilya Altukhov, Nikita V. Dovidchenko, Vera Odintsova, Natalia Klimenko, Robert Loshkarev, Maria Pashkova, A. N. Elizarova, Viktoriya Voroshilova, Sergei Slavskii, Yury Pekov, É. D. Filippova, Tatiana I. Shashkova, E.V. Levin, Dmitry Alexeev
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12917-021-02972-0

Spatiotemporal variation in the fecal microbiota of mule deer is associated with proximate and future measures of host health
Cited by: 1
Author(s): Hyrum S. Eddington, Courtney Carroll, Randy T. Larsen, Brock R. McMillan, John M. Chaston
Software Mentions: 1
Published: about 5 years ago

10.1186/s12917-020-02477-2

The gut bacterial diversity of sheep associated with different breeds in Qinghai province
Cited by: 20
Author(s): Jianjun Chang, Xiaoting Yao, Chenxiang Zuo, Yuxu Qi, Dekun Chen, Wentao Ma
Software Mentions: 1
Published: about 6 years ago

10.1186/s12917-020-02437-w

Saccharomyces cerevisiae fermentation products (SCFP) stabilize the ruminal microbiota of lactating dairy cows during periods of a depressed rumen pH
Cited by: 19
Author(s): Hein Min Tun, Shucong Li, I. Yoon, S. J. Meale, Paula Azevedo, Ehsan Khafipour, J.C. Plaizier
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21207508

m6A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms
Cited by: 8
Author(s): Miriam Ruocco, Luca Ambrosino, Marlene Jahnke, Maria Luisa Chiusano, Isabel Barrote, Gabriele Procaccini, João Silva, Emanuela Dattolo
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.00120

Distinct Types of Gut Microbiota Dysbiosis in Hospitalized Gastroenterological Patients Are Disease Non-related and Characterized With the Predominance of Either Enterobacteriaceae or Enterococcus
Cited by: 19
Author(s): Aleksander Mahnič, Martin Breskvar, Sašo Džeroski, Pavel Skok, Špela Pintar, Maja Rupnik
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.656656

Build Your Own Mushroom Soil: Microbiota Succession and Nutritional Accumulation in Semi-Synthetic Substratum Drive the Fructification of a Soil-Saprotrophic Morel
Cited by: 21
Author(s): Hao Tan, Yang Yu, Jie Tang, Tianhai Liu, Renyun Miao, Huang ZhongQian, Francis Martin, Weihong Peng
Software Mentions: 1
Published: about 5 years ago

10.1186/s12917-017-1073-9

A diet change from dry food to beef induces reversible changes on the faecal microbiota in healthy, adult client-owned dogs
Cited by: 55
Author(s): Kristin Marie Valand Herstad, Karina Gajardo, Anne Marie Bakke, Lars Moe, Jane Ludvigsen, Knut Rudi, Ida Rud, Monika Sekelja, Ellen Skancke
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2015.00193

Stable microbial community composition on the Greenland Ice Sheet
Cited by: 53
Author(s): Michaela Musilova, Martyn Tranter, Sarah A. Bennett, Jemma L. Wadham, Alexandre M. Anesio
Software Mentions: 1
Published: over 11 years ago

10.1186/1746-6148-9-258

Multivariate evaluation of the effectiveness of treatment efficacy of cypermethrin against sea lice (Lepeophtheirus salmonis) in Atlantic salmon (Salmo salar)
Cited by: 10
Author(s): Daniel Ferrer Jiménez, Crawford W. Revie, Simon P. Hardy, P. A. Jansen, G. Gettinby
Software Mentions: 1
Published: over 13 years ago

10.1186/s12917-020-02670-3

Effect of sterilization on the canine vaginal microbiota: a pilot study
Cited by: 5
Author(s): Ada Rota, Michela Corrò, Ilaria Patuzzi, Chiara Milani, Stefania Masia, Eleonora Mastrorilli, Sara Petrin, Alessandra Longo, Angela Del Carro, Carmen Losasso
Software Mentions: 1
Published: over 5 years ago

10.1186/s12917-020-02295-6

The equine gastrointestinal microbiome: impacts of weight-loss
Cited by: 19
Author(s): Philippa K. Morrison, C. J. Newbold, Eleanor Jones, Hilary J. Worgan, Dai Grove‐White, Alex Dugdale, Clare Barfoot, Patricia A. Harris, Caroline McG. Argo
Software Mentions: 1
Published: over 6 years ago

10.1186/s13104-017-2960-7

Doxycycline induces dysbiosis in female C57BL/6NCrl mice
Cited by: 27
Author(s): Felicia D. Duke Boynton, Aaron C. Ericsson, Mayu Uchihashi, Misha Dunbar, John E. Wilkinson
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.02858

Intestinal Pioneer Colonizers as Drivers of Ileal Microbial Composition and Diversity of Broiler Chickens
Cited by: 27
Author(s): Denise Russi Rodrigues, Emily Winson, Kim Wilson, W.N. Briggs, Audrey F. Duff, K.M. Chasser, Lisa R. Bielke
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.726483

Metataxonomic Analysis of Grape Microbiota During Wine Fermentation Reveals the Distinction of Cyprus Regional terroirs
Cited by: 11
Author(s): Eleni Kamilari, Minas A. Mina, Christos Karallis, Dimitrios Tsaltas
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12870-019-1661-x

Salt stress vs. salt shock - the case of sugar beet and its halophytic ancestor
Cited by: 49
Author(s): Monika Skorupa, Jacek Kęsy, Katarzyna Kurnik, Janusz Niedojadło, Jacek Kęsy, Krzysztof Klamkowski, Katarzyna Wójcik, W. Treder, Andrzej Tretyn, Jarosław Tyburski
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-016-0767-7

Shifts in plant foliar and floral metabolomes in response to the suppression of the associated microbiota
Cited by: 38
Author(s): Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Alex Guenther, Joan Llusià, Laura Rico, Jaume Terradas, Gerard Farré‐Armengol, Iolanda Filella, Teodor Parella, Josep Peñuelas
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2020.00891

Comparing Gut Microbiome in Mothers’ Own Breast Milk- and Formula-Fed Moderate-Late Preterm Infants
Cited by: 24
Author(s): Ziyi Wang, Achal Neupane, Richard Vo, Jessica White, Xiuqing Wang, Shin-Yi Lee Marzano
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.718884

Mucosal Microbiota and Metabolome in the Ileum of Hu Sheep Offered a Low-Grain, Pelleted or Non-pelleted High-Grain Diet
Cited by: 3
Author(s): Ruiyang Zhang, Zhiqiang Zhong, Huiting Ma, Limei Lin, Fei Xie, Shengyong Mao, David M. Irwin, Zhe Wang, Shuyi Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2021.678012

Massive Survey on Bacterial–Bacteriophages Biodiversity and Quality of Natural Whey Starter Cultures in Trentingrana Cheese Production
Cited by: 5
Author(s): Mancini Am, Maria Cid Rodriguez, Miriam Zago, Nicola Cologna, Andrea Goss, Ilaria Carafa, Kieran Tuohy, Andrea Merz, Elena Franciosi
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.541583

Forest Microhabitat Affects Succession of Fungal Communities on Decomposing Fine Tree Roots
Cited by: 11
Author(s): Petr Kohout, Radka Sudová, Vendula Brabcová, Stanislav Vosolsobě, Petr Baldrián, Jana Albrechtová
Software Mentions: 1
Published: over 5 years ago

10.1186/s12887-017-0805-0

Assessment of complementary feeding of Canadian infants: effects on microbiome & oxidative stress, a randomized controlled trial
Cited by: 40
Author(s): Wafaa Qasem, Meghan B. Azad, Zakir Hossain, Elnaz Azad, Sarah Jorgensen, Sandra Castillo San Juan, Chenxi Cai, Ehsan Khafipour, Trust Beta, L. Jackson Roberts, James K. Friel
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.00153

Microbial and Viral Communities and Their Antibiotic Resistance Genes Throughout a Hospital Wastewater Treatment System
Cited by: 54
Author(s): Morgan Petrovich, Adi Zilberman, Aviv Kaplan, Gefen R. Eliraz, Yübo Wang, Kathryn Langenfeld, Melissa B. Duhaime, Krista Wigginton, Rachel Poretsky, Dror Avisar, George F. Wells
Software Mentions: 1
Published: over 6 years ago

10.1186/s12887-020-02433-x

Breastfeeding restored the gut microbiota in caesarean section infants and lowered the infection risk in early life
Cited by: 16
Author(s): Gregory Yin Ming Cheng, Qian Zhou, Muxia Li, Zhou LeTian, Lei Xu, Ying Zhang, Dongfang Li, Ye Wang, Wenkui Dai, Shuai Cheng Li, Lin Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21228733

Connection between the Gut Microbiome, Systemic Inflammation, Gut Permeability and FOXP3 Expression in Patients with Primary Sjögren’s Syndrome
Cited by: 33
Author(s): Antonio Cano-Ortiz, Aurora Laborda-Illanes, Isaac Plaza-Andrades, Alberto Membrillo del Pozo, Alberto Villarrubia, Marina Rodríguez‐Calvo‐de‐Mora, Isabel Leiva-Gea, Lidia Sánchez-Alcoholado, María Isabel Queipo-Ortuño
Software Mentions: 1
Published: over 5 years ago

10.1186/s12887-019-1502-y

MAMI: a birth cohort focused on maternal-infant microbiota during early life
Cited by: 24
Author(s): Izaskun García-Mantrana, Cristina Alcántara, Marta Selma‐Royo, Alba Boix-Amorós, Majda Dzidic, José V. Gimeno-Alcañíz, Isabel Úbeda-Sansano, Ignacio Sorribes-Monrabal, Ramón Escuriet, Fernando Gil-Raga, Anna Parra-Llorca, Cécilia Martínez-Costa, María Carmen Collado
Software Mentions: 1
Published: over 7 years ago

10.1186/s12903-021-01529-9

Removable denture is a risk indicator for peri-implantitis and facilitates expansion of specific periodontopathogens: a cross-sectional study
Cited by: 8
Author(s): Jasmin Grischke, Szymon P. Szafrański, Uthayakumar Muthukumarasamy, Susanne Haeussler, Meike Stiesch
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21238946

The Gut-Muscle Axis in Older Subjects with Low Muscle Mass and Performance: A Proof of Concept Study Exploring Fecal Microbiota Composition and Function with Shotgun Metagenomics Sequencing
Cited by: 51
Author(s): Andrea Ticinesi, Leonardo Mancabelli, Sara Tagliaferri, Antonio Nouvenne, Christian Milani, Daniele Del Rio, Fulvio Lauretani, Marcello Maggio, Marco Ventura, Tiziana Meschi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12903-021-01828-1

Old age and other factors associated with salivary microbiome variation
Cited by: 17
Author(s): Joel L. Schwartz, Natalia Peña, Nadia Kawar, Andrew Zhang, Nicholas Callahan, Steven J. Robles, Andrew Griebel, Guy R. Adami
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnut.2018.00028

Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet
Cited by: 107
Author(s): Ravinder Nagpal, Carol A. Shively, Susan A Appt, Thomas C. Register, Kristofer T. Michalson, Mara Z. Vitolins, Hariom Yadav
Software Mentions: 1
Published: over 8 years ago

10.3389/fnut.2020.615003

Metabolic and Gut Microbiota Responses to Sourdough Pasta Consumption in Overweight and Obese Adults
Cited by: 4
Author(s): Saleh Shah, Paul D. Brown, Shyamchand Mayengbam, Michael G. Gänzle, Weilan Wang, Chunlong Mu, Silvio Lettrari, Craig Bertagnolli, Jane Shearer
Software Mentions: 1
Published: over 5 years ago

10.3389/fnut.2019.00120

Early-Life Iron Deficiency and Subsequent Repletion Alters Development of the Colonic Microbiota in the Pig
Cited by: 14
Author(s): Laura C. Knight, Mei Wang, Sharon M. Donovan, Ryan N. Dilger
Software Mentions: 1
Published: about 7 years ago

10.3389/fnut.2021.705763

Probiotic Effects of Lactobacillus fermentum ZJUIDS06 and Lactobacillus plantarum ZY08 on Hypercholesteremic Golden Hamsters
Cited by: 22
Author(s): Dongting Yang, Wentao Lyu, Zhengqiang Hu, Jiting Gao, Zhiyao Zheng, Weijun Wang, Jenni Firrman, Dawei Ren
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22020689

Paternal Methyl Donor Supplementation in Rats Improves Fertility, Physiological Outcomes, Gut Microbial Signatures and Epigenetic Markers Altered by High Fat/High Sucrose Diet
Cited by: 7
Author(s): Faye Chleilat, Alana Schick, Julie Deleemans, Raylene A. Reimer
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.614448

Dysbiosis of Oral Microbiota During Oral Squamous Cell Carcinoma Development
Cited by: 43
Author(s): Purandar Sarkar, Samaresh Malik, Sayantan Laha, Shantanab Das, Soumya Bunk, Jharna Ray, Raghunath Chatterjee, Abhik Saha
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22031233

Intestinal SIRT1 Deficiency-Related Intestinal Inflammation and Dysbiosis Aggravate TNFα-Mediated Renal Dysfunction in Cirrhotic Ascitic Mice
Cited by: 6
Author(s): Yu Te Chou, Tze Tze Liu, Ueng Cheng Yang, Chia Chang Huang, Chih Wei Liu, Shiang Fen Huang, Tzu-Hao Li, Hsuan Miao Liu, Ming Lin, Ying Yang, Tzung-Yan Lee, Yi Hsiang Huang, Ming Hou, Han Chieh Lin
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2019.01684

Alpha-Glucosidase Inhibitors Alter Gut Microbiota and Ameliorate Collagen-Induced Arthritis
Cited by: 22
Author(s): Lingshu Zhang, Pingfang Song, Xiaowei Zhang, Christina Metea, Matthew Schleisman, Lisa Karstens, Eric T. Leung, Jun Zhang, Qiang Xu, Yi Liu, Mark Asquith, Cong Qiu Chu
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2021.665881

Anti-Obesity Effect of Fermented Panax notoginseng Is Mediated Via Modulation of Appetite and Gut Microbial Population
Cited by: 5
Author(s): Na Rae Shin, Shambhunath Bose, Yura Choi, Youngmi Kim, Young‐Won Chin, Eun-Ji Song, Young-Do Nam, Hojun Kim
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2020.569402

The Effects of Gum Acacia on the Composition of the Gut Microbiome and Plasma Levels of Short-Chain Fatty Acids in a Rat Model of Chronic Kidney Disease
Cited by: 14
Author(s): Maha Al-Asmakh, Muhammad Sohail, Ola Al-Jamal, Banan Mosaad Shoair, Asmaa Yousef Al-Baniali, Salma Bouabidi, Shahd Nasr, Hiba Bawadi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12903-019-0906-2

Composition and diversity of the subgingival microbiome and its relationship with age in postmenopausal women: an epidemiologic investigation
Cited by: 15
Author(s): Michael J. LaMonte, Robert J. Genco, Michael Buck, Daniel McSkimming, Lü Li, Kathleen M. Hovey, Chris Andrews, Wei Zheng, Yijun Sun, Amy E. Millen, Maria Tsompana, Hailey R. Banack, Jean Wactawski‐Wende
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphar.2020.00833

Integrated Metagenomic and Metabolomic Analyses of the Effect of Astragalus Polysaccharides on Alleviating High-Fat Diet–Induced Metabolic Disorders
Cited by: 47
Author(s): Ying Hong, Bingbing Li, Ningning Zheng, Gaosong Wu, Junli Ma, Xin Tao, Linlin Chen, Jing Zhong, Lili Sheng, Houkai Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2021.663950

Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome
Cited by: 20
Author(s): Jin Xue, Celeste Allaband, Dan Zhou, Orit Poulsen, Cameron Martino, Lingjing Jiang, Anupriya Tripathi, Emmanuel O. Elijah, Pieter C. Dorrestein, Rob Knight, Amir Zarrinpar, Gabriel G. Haddad
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2017.00362

You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their Zooplankton Prey
Cited by: 24
Author(s): Álvaro Roura, Stephen R. Doyle, Manuel Nande, Jan M. Strugnell
Software Mentions: 1
Published: about 9 years ago

10.3389/fphys.2020.607369

Slight Disruption in Intestinal Environment by Dextran Sodium Sulfate Reduces Egg Yolk Size Through Disfunction of Ovarian Follicle Growth
Cited by: 4
Author(s): Takahiro Nii, Takashi Bungo, Naoki Isobe, Y. Yoshimura
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22041647

A Newly Developed Synbiotic Yogurt Prevents Diabetes by Improving the Microbiome–Intestine–Pancreas Axis
Cited by: 13
Author(s): Brandi Miller, Rabina Mainali, Ravinder Nagpal, Hariom Yadav
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2020.00022

Changes in Biochemical Composition and Energy Reserves Associated With Sexual Maturation of Octopus maya
Cited by: 7
Author(s): Cristina Pascual, Honorio Cruz-López, Maité Mascaró, Pedro Gallardo, Ariadna Sánchez, Pedro Domíngues, Carlos Rosas
Software Mentions: 1
Published: over 6 years ago

10.1186/s12903-019-0956-5

The human oral cavity microbiota composition during acute tonsillitis: a cross-sectional survey
Cited by: 17
Author(s): Yun Kit Yeoh, Man Hin Chan, Zigui Chen, Eddy W. H. Lam, Pak-Kin Wong, Chi Man Ngai, Paul K.S. Chan, Michael K. Hui
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22052331

Five Days Periodic Fasting Elevates Levels of Longevity Related Christensenella and Sirtuin Expression in Humans
Cited by: 22
Author(s): Stephanie Lilja, Carina Stoll, Ulrike Krammer, Berit Hippe, Kalina Duszka, Tewodros Debebe, Ingrid Höfinger, Jürgen König, Angelika Pointner, Alexander G. Haslberger
Software Mentions: 1
Published: over 5 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning PERMANOVA 6,292