cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1111/1751-7915.13464

Viral composition and context in metagenomes from biofilm and suspended growth municipal wastewater treatment plants
Cited by: 18
Author(s): Morgan Petrovich, Sarah Ben Maamar, Erica M. Hartmann, Brian T. Murphy, Rachel Poretsky, George F. Wells
Software Mentions: 1
Published: over 5 years ago

10.1111/1751-7915.12769

The contribution of microbial biotechnology to mitigating coral reef degradation
Cited by: 80
Author(s): Katarina Damjanovic, Linda L. Blackall, Nicole S. Webster, Madeleine J. H. van Oppen
Software Mentions: 1
Published: over 7 years ago

10.1111/1751-7915.12457

Effect of temperature and colonization of Legionella pneumophila and Vermamoeba vermiformis on bacterial community composition of copper drinking water biofilms
Cited by: 31
Author(s): Helen Y. Buse, Peng Ji, Vicente Gomez-Alvarez, Amy Pruden, Marc Edwards, Nicholas J. Ashbolt
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-69562-2

Distribution patterns, carbon sources and niche partitioning in cave shrimps (Atyidae: Typhlatya)
Cited by: 18
Author(s): Efraín M. Chávez-Solís, C. Solı́s, Nuno Simões, Maité Mascaró
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-70055-5

Asynchrony among insect pollinator groups and flowering plants with elevation
Cited by: 9
Author(s): Opeyemi Adedoja, Temitope Kehinde, Michael J. Samways
Software Mentions: 1
Published: over 4 years ago

10.1111/1751-7915.13395

Effect of forest fire prevention treatments on bacterial communities associated with productiveBoletus edulissites
Cited by: 18
Author(s): Olaya Mediavilla, József Geml, Jaime Olaizola, Juan Rueda, Petr Baldrián, Pablo Martín‐Pinto
Software Mentions: 1
Published: over 5 years ago

10.1186/s42523-019-0006-2

Impact of coccidiostat and phytase supplementation on gut microbiota composition and phytate degradation in broiler chickens
Cited by: 7
Author(s): Susanne Künzel, Daniel Borda-Molina, Rebecca A. Kraft, Vera Sommerfeld, Imke Kühn, Amélia Camarinha‐Silva, M. Rodehutscord
Software Mentions: 1
Published: over 5 years ago

10.1111/1751-7915.13417

Long‐term microbial community dynamics at two full‐scale biotrickling filters treating pig house exhaust air
Cited by: 8
Author(s): Caroline Van der Heyden, Tom De Mulder, Eveline Volcke, Peter Demeyer, Marc Heyndrickx, Geertrui Rasschaert
Software Mentions: 1
Published: over 5 years ago

10.1186/s42523-021-00128-x

Low pathogenic avian influenza virus infection retards colon microbiota diversification in two different chicken lines
Cited by: 8
Author(s): Klaudia Chrząstek, Joy Leng, Mohammad Khalid Zakaria, Dagmara Bialy, Roberto La Ragione, Holly Shelton
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-70745-0

The Anopheles coluzzii microbiome and its interaction with the intracellular parasite Wolbachia
Cited by: 21
Author(s): Timothy J. Straub, W. Robert Shaw, Perrine Marcenac, Simon P. Sawadogo, Roch K. Dabiré, Abdoulaye Diabaté, Flaminia Catteruccia, Daniel E. Neafsey
Software Mentions: 1
Published: over 4 years ago

10.1111/1751-7915.13461

Aquatic microbial diversity associated with faecal pollution of Norwegian waterbodies characterized by 16S rRNA gene amplicon deep sequencing
Cited by: 15
Author(s): Lisa Paruch, Adam M. Paruch, Hans Geir Eiken, Roald Sørheim
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-70765-w

C57BL/6J substrain differences in response to high-fat diet intervention
Cited by: 32
Author(s): Majken Siersbæk, Nicholas Ditzel, Eva Kildall Hejbøl, Stine M. Præstholm, Lasse K. Markussen, Fabio Avolio, Lingzi Li, Lasse Lehtonen, Axel Kornerup Hansen, Henrik Daa Schrøder, Łukasz Krych, Susanne Mandrup, Louise Langhorn, Peter Bollen, Lars Grøntved
Software Mentions: 1
Published: over 4 years ago

10.3390/metabo9100229

Metabolite Changes in an Estuarine Annelid Following Sublethal Exposure to a Mixture of Zinc and Boscalid
Cited by: 12
Author(s): Georgia M. Sinclair, Allyson L. O’Brien, Michael J. Keough, David P. De Souza, Saravanan Dayalan, Komal Kanojia, Konstantinos A. Kouremenos, Dedreia Tull, Rhys A. Coleman, Oliver A.H. Jones, Sara M. Long
Software Mentions: 1
Published: about 5 years ago

10.3390/metabo10090370

Effect of Added Dietary Betaine and Soluble Fiber on Metabolites and Fecal Microbiome in Dogs with Early Renal Disease
Cited by: 11
Author(s): Eden Ephraim, Dennis E. Jewell
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-71371-6

Altered gut microbiota correlated with systemic inflammation in children with Kawasaki disease
Cited by: 20
Author(s): Jie Chen, Yanghua Yue, Lu Wang, Zixin Deng, Yong-Hua Yuan, Ming‐Hui Zhao, Zijie Yuan, Changlian Tan, Youde Cao
Software Mentions: 1
Published: about 4 years ago

10.3390/metabo9060112

Dynamic Changes of Plasma Metabolome in Response to Severe Feed Restriction in Pregnant Ewes
Cited by: 14
Author(s): Chang Guo, Yanfeng Xue, Hossam-eldin Seddik, Yi Yin, Fan Hu, Shengyong Mao
Software Mentions: 1
Published: over 5 years ago

10.1590/0074-02760200427

Presence of trypanosomatids, with emphasis on Leishmania, in Rodentia and Didelphimorphia mammals of a rural settlement in the central Amazon region
Cited by: 1
Author(s): Genevere Reis Achilles, Rafael Pinto Kautzmann, Haile Dean Figueiredo Chagas, Jordam William Pereira-Silva, João Aprígio Guerra de Almeida, Fernanda Rodrigues Fonseca, Maria Nazareth Ferreira da Silva, Felipe Arley Costa Pessoa, Alessandra Nava, Claudia Maria Ríos-Velásquez
Software Mentions: 1
Published: almost 4 years ago

10.1186/s42523-020-00031-x

Effect of Cyberlindnera jadinii yeast as a protein source on intestinal microbiota and butyrate levels in post-weaning piglets
Cited by: 9
Author(s): Stanislav Iakhno, Özgün Candan Onarman Umu, Ingrid Marie Håkenåsen, Caroline Piercey Åkesson, Liv Torunn Mydland, Charles McL. Press, Henning Sørum, Margareth Øverland
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-71633-3

IRF2 maintains the stemness of colonic stem cells by limiting physiological stress from interferon
Cited by: 12
Author(s): Kana Minamide, Taku Sato, Yusuke Nakanishi, Hiroshi Ohno, Tamotsu Kato, Jumpei Asano, Toshiaki Ohteki
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-71782-5

Micro-climatic effects on plant phenolics at the community level in a Mediterranean savanna
Cited by: 3
Author(s): Xoaquín Moreira, Luis Abdala‐Roberts, Maria Dolores Hidalgo-Galvez, Carla Vázquez‐González, Ignacio Manuel Pérez-Ramos
Software Mentions: 1
Published: about 4 years ago

10.4317/medoral.23041

Characteristics of the salivary microbiota in cheilitis granulomatosa
Cited by: 2
Author(s): Yang Liu, Qian Zhang, Xiaosheng Hu, Feng Chen, Hong Hua
Software Mentions: 1
Published: almost 6 years ago

10.1186/s42523-021-00097-1

Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection
Cited by: 3
Author(s): Jérémy Le Luyer, Quentin Schull, Pauline Auffret, Pierre López, Margaux Crusot, Corinne Belliard, Câline Basset, Quentin Carradec, Julie Poulain, Serge Planes, Denis Saulnier
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-71603-9

Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Cited by: 12
Author(s): Yacine Ben Chehida, Julie Thumloup, Cassie A. Schumacher, Timothy T. Harkins, Àlex Aguilar, Asunción Borrell, Marisa Ferreira, Lorenzo Rojas‐Bracho, Kelly M. Robertson, Barbara L. Taylor, Gísli A. Víkingsson, Arthur Weyna, Jonathan Romiguier, Phillip A. Morin, Michaël C. Fontaine
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-020-00072-2

Effects of aging on the skin and gill microbiota of farmed seabass and seabream
Cited by: 21
Author(s): Daniela Rosado, Marcos Pérez‐Losada, Ana Pereira, Ricardo Severino, Raquel Xavier
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms19072084

Beneficial Impact and Molecular Mechanism of Bacillus coagulans on Piglets’ Intestine
Cited by: 27
Author(s): Tao Wu, Yue Zhang, Yang Lv, Peng Li, Dan Yi, Lei Wang, Di Zhao, Hongbo Chen, Joshua Gong, Yongqing Hou
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19092699

The Cutaneous Microbiome and Wounds: New Molecular Targets to Promote Wound Healing
Cited by: 125
Author(s): Taylor Johnson, Belinda I. Gómez, Matthew K. McIntyre, Michael A. Dubick, Robert J. Christy, Susannah E. Nicholson, David M. Burmeister
Software Mentions: 1
Published: about 6 years ago

10.1155/2020/8829072

Alterations in the Blood Parameters and Fecal Microbiota and Metabolites during Pregnant and Lactating Stages in Bama Mini Pigs as a Model
Cited by: 8
Author(s): Cui Ma, Qiankun Gao, WangHong Zhang, Md. Abul Kalam Azad, Xiangfeng Kong
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-71791-4

Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination
Cited by: 5
Author(s): Susanna K. Tan, Andrea Granados, Jérôme Bouquet, Yana Emmy Hoy-Schulz, Lauri Green, Scot Federman, Doug Stryke, Thomas D. Haggerty, Catherine Ley, Ming Te Yeh, Kaniz Jannat, Yvonne Maldonado, Raul Andino, Julie Parsonnet, Charles Y. Chiu
Software Mentions: 1
Published: about 4 years ago

10.3390/md18120598

Sterol Composition of Sponges, Cnidarians, Arthropods, Mollusks, and Echinoderms from the Deep Northwest Atlantic: A Comparison with Shallow Coastal Gulf of Mexico
Cited by: 6
Author(s): Laura Carreón-Palau, Nurgül Şen Özdemir, Christopher C. Parrish, Camilla Parzanini
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-72653-9

Limited effect of radial oxygen loss on ammonia oxidizers in Typha angustifolia root hairs
Cited by: 1
Author(s): Elena Hernández‐del Amo, Iva Dolinová, Gal la Ramis-Jorba, Frédéric Gich, Lluís Bañeras
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-72635-x

Comparison of gut microbiota in exclusively breast-fed and formula-fed babies: a study of 91 term infants
Cited by: 107
Author(s): Jingran Ma, Zhenghong Li, Wenjuan Zhang, Chunli Zhang, Yuheng Zhang, Hua Mao, Na Zhuo, Hongyun Wang, Lin Wang, Dan Wu
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-72816-8

Effect of very low-protein diets supplemented with branched-chain amino acids on energy balance, plasma metabolomics and fecal microbiome of pigs
Cited by: 32
Author(s): Shelby Spring, Hasitha Premathilake, Chloe Bradway, Cedrick N Shili, Udaya DeSilva, Scott L. Carter, Adel Pezeshki
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-021-00083-7

Effects of calcium level and source, formic acid, and phytase on phytate degradation and the microbiota in the digestive tract of broiler chickens
Cited by: 8
Author(s): Jochen Krieg, Daniel Borda-Molina, W. Siegert, Vera Sommerfeld, Yung Ping, Hamid Reza Taheri, Dieter Feuerstein, Amélia Camarinha‐Silva, M. Rodehutscord
Software Mentions: 1
Published: over 3 years ago

10.3390/nu7063999

Pyrosequencing Analysis Reveals Changes in Intestinal Microbiota of Healthy Adults Who Received a Daily Dose of Immunomodulatory Probiotic Strains
Cited by: 47
Author(s): Julio Plaza‐Díaz, Jose Ángel Fernández-Caballero, Natalia Chueca, Féderico García, Carolina Gómez-Llorente, María José Sáez-Lara, Luis Fontana, Ángel Gil
Software Mentions: 1
Published: over 9 years ago

10.3390/md18030177

The Microbial Community of Tetrodotoxin-Bearing and Non-Tetrodotoxin-Bearing Ribbon Worms (Nemertea) from the Sea of Japan
Cited by: 3
Author(s): Daria I. Melnikova, Timur Yu. Magarlamov
Software Mentions: 1
Published: over 4 years ago

10.3390/md17010017

The Jellyfish Rhizostoma pulmo (Cnidaria): Biochemical Composition of Ovaries and Antibacterial Lysozyme-like Activity of the Oocyte Lysate
Cited by: 14
Author(s): Loredana Stabili, Lucia Rizzo, Francesco Paolo Fanizzi, Federica Angilè, Laura Del Coco, Chiara Roberta Girelli, Silvia Lomartire, Stefano Piraino, Lorena Basso
Software Mentions: 1
Published: almost 6 years ago

10.3390/md18030175

Marine Microalgae, Spirulina maxima-Derived Modified Pectin and Modified Pectin Nanoparticles Modulate the Gut Microbiota and Trigger Immune Responses in Mice
Cited by: 24
Author(s): H.P.S.U. Chandrarathna, T.D. Liyanage, Shan Lakmal Edirisinghe, S.H.S. Dananjaya, E.H.T. Thulshan, Chamilani Nikapitiya, Chulhong Oh, Do‐Hyung Kang, Mahanama De Zoysa
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-73293-9

Seasonal dynamics of lotic bacterial communities assessed by 16S rRNA gene amplicon deep sequencing
Cited by: 11
Author(s): Lisa Paruch, Adam M. Paruch, Hans Geir Eiken, Monica Skogen, Roald Sørheim
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-73649-1

Fruit host-dependent fungal communities in the microbiome of wild Queensland fruit fly larvae
Cited by: 7
Author(s): Rajib Majumder, Brodie Sutcliffe, Phillip W. Taylor, Toni A. Chapman
Software Mentions: 1
Published: about 4 years ago

10.3390/md14030049

Bioprospecting of Marine Macrophytes Using MS-Based Lipidomics as a New Approach
Cited by: 42
Author(s): Elisabete Maciel, Miguel C. Leal, Ana I. Lillebø, Pedro Domingues, M. Rosário M. Domingues, Ricardo Calado
Software Mentions: 1
Published: over 8 years ago

10.1186/s42523-020-00060-6

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals
Cited by: 4
Author(s): Meredith Tavenner, Sue M. McDonnell, Amy S. Biddle
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-73702-z

Diel vertical migration into anoxic and high-pCO2 waters: acoustic and net-based krill observations in the Humboldt Current
Cited by: 11
Author(s): Ramiro Riquelme‐Bugueño, Iván Pérez-Santos, Nicolás Alegría, Cristian A. Vargas, Mauricio A. Urbina, Rubén Escribano
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-019-0009-z

Take care of the environment: housing conditions affect the interplay of nutritional interventions and intestinal microbiota in broiler chickens
Cited by: 29
Author(s): Jannigje G. Kers, Francisca C. Velkers, E.A.J. Fischer, Gerben D. A. Hermes, D.M. Lamot, J.A. Stegeman, Hauke Smidt
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-74379-0

Prebiotic effects of yeast mannan, which selectively promotes Bacteroides thetaiotaomicron and Bacteroides ovatus in a human colonic microbiota model
Cited by: 30
Author(s): Shunsuke Oba, Tadahiro Sunagawa, Reiko Tanihiro, Kyoko Awashima, Hiroshi Sugiyama, Tetsuji Odani, Yasunori Nakamura, Akihiko Kondo, Daisuke Sasaki, Kengo Sasaki
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-74670-0

Differential processing of dissolved and particulate organic matter by deep-sea sponges and their microbial symbionts
Cited by: 26
Author(s): Martijn C. Bart, A. de Kluijver, Sean Hoetjes, Samira Absalah, Benjamin Mueller, Ellen Kenchington, Hans Tore Rapp, Jasper M. de Goeij
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms20184547

MAPK Pathway under Chronic Copper Excess in Green Macroalgae (Chlorophyta): Influence on Metal Exclusion/Extrusion Mechanisms and Photosynthesis
Cited by: 13
Author(s): Paula S. M. Celis-Plá, Fernanda Rodríguez-Rojas, Lorena Méndez, Fabiola Moenne, Pamela T. Muñoz, María Gabriela Lobos, Patricia Verónica López Díaz, José Luis Sánchez-Lizaso, Murray T. Brown, Alejandra Moenne, Claudio A. Sáez
Software Mentions: 1
Published: about 5 years ago

10.3390/md19080469

Screening for Health-Promoting Fatty Acids in Ascidians and Seaweeds Grown under the Influence of Fish Farming Activities
Cited by: 1
Author(s): Luísa Marques, Rosário M. Domingues, Elisabete da Costa, Maria Helena Abreu, Ana I. Lillebø, Ricardo Calado
Software Mentions: 1
Published: over 3 years ago

10.3390/md17040233

Comparison of Diatoms and Dinoflagellates from Different Habitats as Sources of PUFAs
Cited by: 39
Author(s): Elina Peltomaa, Heidi Hällfors, Sami J. Taipale
Software Mentions: 1
Published: over 5 years ago

10.3390/md11020489

Sources of Secondary Metabolite Variation in Dysidea avara (Porifera: Demospongiae): The Importance of Having Good Neighbors
Cited by: 31
Author(s): Sònia de Caralt, Delphine Bry, Nataly Bontemps, Xavier Turon, María-J. Uriz, Bernard Banaigs
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-020-74586-9

Microbial community dynamics in phyto-thermotherapy baths viewed through next generation sequencing and metabolomics approach
Cited by: 4
Author(s): Elena Franciosi, Luca Narduzzi, Antonella Paradiso, Silvia Carlin, Kieran Tuohy, Alberto Beretta, Fulvio Mattivi
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75117-2

Trophic downgrading reduces spatial variability on rocky reefs
Cited by: 7
Author(s): Matthew S. Edwards, Brenda Konar
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75229-9

Increased intestinal permeability and gut dysbiosis in the R6/2 mouse model of Huntington’s disease
Cited by: 49
Author(s): Tiberiu Loredan Stan, Rana Soylu-Kucharz, Stephen Burleigh, Olena Prykhodko, Ling Cao, Naomi Franke, Marie Sjögren, Caroline Haikal, Frida Fåk Hållenius, Maria Björkqvist
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75370-5

Interannual variability in the lipid and fatty acid profiles of east Australia-migrating humpback whales (Megaptera novaeangliae) across a 10-year timeline
Cited by: 15
Author(s): Jasmin Groß, Patti Virtue, Peter D. Nichols, Pascale Eisenmann, Courtney Waugh, Susan Bengtson Nash
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75026-4

Effects of long-lasting social isolation and re-socialization on cognitive performance and brain activity: a longitudinal study in Octodon degus
Cited by: 27
Author(s): Daniela Rivera, Carolina B. Lindsay, Carolina A. Oliva, Juan Francisco Codocedo, Francisco Bozinovic, Nibaldo C. Inestrosa
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75452-4

Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics
Cited by: 5
Author(s): Katie M. McGee, Teresita M. Porter, Michael Wright, Mehrdad Hajibabaei
Software Mentions: 1
Published: about 4 years ago

10.3390/md13074357

Lipids and Composition of Fatty Acids of Saccharina latissima Cultivated Year-Round in Integrated Multi-Trophic Aquaculture
Cited by: 31
Author(s): Gonçalo Silva Marinho, Susan Løvstad Holdt, Charlotte Jacobsen, Irini Angelidaki
Software Mentions: 1
Published: over 9 years ago

10.1186/s42523-019-0011-5

Similar bacterial communities on healthy and injured skin of black tip reef sharks
Cited by: 20
Author(s): Claudia Pogoreutz, Mauvis A. Gore, Gabriela Perna, Catriona Millar, Robert Nestler, Rupert Ormond, Christopher R. Clarke, Christian R. Voolstra
Software Mentions: 1
Published: about 5 years ago

10.1186/s42523-019-0002-6

Distinct microbiotas of anatomical gut regions display idiosyncratic seasonal variation in an avian folivore
Cited by: 19
Author(s): Sergei V. Drovetski, Michael O’Mahoney, Kenan O. Matterson, Brian K. Schmidt, Gary R. Graves
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76188-x

Increase in temperature enriches heat tolerant taxa in Aedes aegypti midguts
Cited by: 20
Author(s): Gorreti Maria Onyango, M. Sean Bialosuknia, Fred Payne, Nicholas Mathias, Alexander T. Ciota, D. Laura Kramer
Software Mentions: 1
Published: about 4 years ago

10.3390/md13031410

Solvent Separating Secondary Metabolites Directly from Biosynthetic Tissue for Surface-Assisted Laser Desorption Ionisation Mass Spectrometry
Cited by: 10
Author(s): David Rudd, Kirsten Benkendorff, Nicolas H. Voelcker
Software Mentions: 1
Published: over 9 years ago

10.1007/s10126-020-09972-5

Diet-Induced Physiological Responses in the Liver of Atlantic Salmon (Salmo salar) Inferred Using Multiplex PCR Platforms
Cited by: 6
Author(s): Albert Caballero‐Solares, Xi Xue, Beth M. Cleveland, Maryam Beheshti Foroutani, Christopher C. Parrish, Richard G. Taylor, Matthew L. Rise
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-76545-w

Pelvic bone morphometric analysis in the dugong (Dugong dugon)
Cited by: 2
Author(s): Korakot Nganvongpanit, Phaothep Cherdsukjai, Burin Boonsri, Kittisak Buddhachat, Patcharaporn Kaewmong, Kongkiat Kittiwattanawong
Software Mentions: 1
Published: about 4 years ago

10.1007/s00227-013-2329-y

Species-specific effect of macrobenthic assemblages on meiobenthos and nematode community structure in shallow sandy sediments
Cited by: 21
Author(s): Barbara Urban-Malinga, Aleksander Drgas, Sławomira Gromisz, Natalie Y. Barnes
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-020-76858-w

Seasonal patterns in stable isotope and fatty acid profiles of southern stingrays (Hypanus americana) at Stingray City Sandbar, Grand Cayman
Cited by: 3
Author(s): Lisa A. Hoopes, Tonya M. Clauss, Nicole E. Browning, Alexa J. Delaune, Bradley M. Wetherbee, Jessica C. Harvey, Guy Harvey
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-021-00127-y

Microbial taxa in dust and excreta associated with the productive performance of commercial meat chicken flocks
Cited by: 7
Author(s): Yugal Raj Bindari, Robert J. Moore, Thi Thu Hao Van, Stephen W. Walkden‐Brown, Priscilla F. Gerber
Software Mentions: 1
Published: about 3 years ago

10.1007/s00227-016-3029-1

Survival of ship biofouling assemblages during and after voyages to the Canadian Arctic
Cited by: 22
Author(s): Farrah T. Chan, Hugh J. MacIsaac, Sarah A. Bailey
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-76817-5

Impairment of microbial and meiofaunal ecosystem functions linked to algal forest loss
Cited by: 8
Author(s): Silvia Bianchelli, Roberto Danovaro
Software Mentions: 1
Published: about 4 years ago

10.1007/s00227-018-3338-7

Limited impact of an invasive oyster on intertidal assemblage structure and biodiversity: the importance of environmental context and functional equivalency with native species
Cited by: 14
Author(s): Nadescha Zwerschke, Philip R. Hollyman, Romy Wild, Robin Strigner, John R. G. Turner, J. W. King
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21061916

In Situ Profiling of the Three Dominant Phyla Within the Human Gut Using TaqMan PCR for Pre-Hospital Diagnosis of Gut Dysbiosis
Cited by: 4
Author(s): Young Chang Jo, Setu Bazie Tagele, Huy Quang Pham, Young Hun Jung, Jerald Conrad Ibal, Seung-Dae Choi, Gi-Ung Kang, Sowon Park, Yunkoo Kang, Seung Kim, Hong Koh, Jae‐Ho Shin
Software Mentions: 1
Published: over 4 years ago

10.1186/s12936-016-1279-5

Determination of the foraging behaviour and blood meal source of malaria vector mosquitoes in Trincomalee District of Sri Lanka using a multiplex real time polymerase chain reaction assay
Cited by: 19
Author(s): Nayana Gunathilaka, Thanuja Denipitiya, Menaka Hapugoda, W. Abeyewickreme, Rajitha Wickremasinghe
Software Mentions: 1
Published: over 8 years ago

10.26508/lsa.201900592

Paneth cell α-defensin misfolding correlates with dysbiosis and ileitis in Crohn’s disease model mice
Cited by: 22
Author(s): Yu Shimizu, Kiminori Nakamura, Aki Yoshii, Yoshiaki Yokoi, Mani Kikuchi, Ryuga Shinozaki, Shunta Nakamura, Shuya Ohira, Rina Sugimoto, Tokiyoshi Ayabe
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.02776-19

Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities
Cited by: 68
Author(s): Paul Carini, Manuel Delgado‐Baquerizo, Eve‐Lyn S. Hinckley, Hannah Holland‐Moritz, Tess E. Brewer, Garrett Rue, Caihong Vanderburgh, Diane M. McKnight, Noah Fierer
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.02780-19

Gut Feelings Begin in Childhood: the Gut Metagenome Correlates with Early Environment, Caregiving, and Behavior
Cited by: 32
Author(s): Jessica Flannery, Keaton Stagaman, Adam R. Burns, Roxana J. Hickey, Leslie E. Roos, Ryan J. Giuliano, Philip A. Fisher, Thomas J. Sharpton
Software Mentions: 1
Published: over 4 years ago

10.3390/life11030235

Gut Microbial Composition and Predicted Functions Are Not Associated with Feather Pecking and Antagonistic Behavior in Laying Hens
Cited by: 10
Author(s): Daniel Borda-Molina, Hanna Iffland, Markus Schmid, Regina Céli Sarkis Müller, Svenja Schad, Jana Seifert, Jens Tetens, W. Bessei, Jörn Bennewitz, Amélia Camarinha‐Silva
Software Mentions: 1
Published: over 3 years ago

10.3390/life10090195

The Effects of Metformin on the Gut Microbiota of Patients with Type 2 Diabetes: A Two-Center, Quasi-Experimental Study
Cited by: 17
Author(s): Harushi Nakajima, Fumie Takewaki, Yoshitaka Hashimoto, Shizuo Kajiyama, Susumu Majima, Hiroshi Okada, Takafumi Senmaru, Emi Ushigome, Naoko Nakanishi, Masahide Hamaguchi, Masahiro Yamazaki, Yoshiki Tanaka, Yousuke Oikawa, Shunji Nakajima, Hiroshi Ohno, Michiaki Fukui
Software Mentions: 1
Published: about 4 years ago

10.1016/S2214-109X(19)30540-6

Cause-specific mortality of children younger than 5 years in communities receiving biannual mass azithromycin treatment in Niger: verbal autopsy results from a cluster-randomised controlled trial
Cited by: 33
Author(s): Jeremy D. Keenan, Ahmed M. Arzika, Ramatou Maliki, Sanoussi Elh Adamou, Fatima Ibrahim, Mariama Kiemago, Nana Fatima Galo, Elodie Lebas, Catherine Cook, Benjamin Vanderschelden, Robin L. Bailey, Sheila K. West, Travis C. Porco, Thomas M. Lietman, Paul M. Emerson, Jerusha Weaver, John Hart, Abdou Amza, Boubacar Kadri, Beido Nassirou, E. Kelly Callahan, Aisha E. P. Stewart, Salissou Kane, Sun Y. Cotter, Thuy Doan, Dionna M. Fry, Ying Lin, Kieran O’Brien, Catherine E. Oldenburg, Kathryn J. Ray, Philip J. Rosenthal, George W Rutherford, Nicole E Varnado, Lina Zhong, Zhaoxia Zhou
Software Mentions: 1
Published: almost 5 years ago

10.1002/cam4.2419

Dysbiosis signatures of the microbial profile in tissue from bladder cancer
Cited by: 59
Author(s): Fei Liu, Anwei Liu, Xin Lü, Zhensheng Zhang, Yongping Xue, Jiapeng Xu, Shuxiong Zeng, Qiao Xiong, Haoyuan Tan, Xing He, Weidong Xu, Yinghao Sun, Chuanliang Xu
Software Mentions: 1
Published: about 5 years ago

10.1155/2016/4792898

Program and Abstracts from the Canadian Digestive Diseases Week™2016
Cited by: 11
Author(s): Gastroenterology Ca
Software Mentions: 1
Published: almost 9 years ago

10.3390/brainsci11070905

Andrographolide Attenuates Gut-Brain-Axis Associated Pathology in Gulf War Illness by Modulating Bacteriome-Virome Associated Inflammation and Microglia-Neuron Proinflammatory Crosstalk
Cited by: 10
Author(s): Punnag Saha, Peter T Skidmore, LaRinda A Holland, Ayan Mondal, Dipro Bose, Ratanesh Seth, Kimberly Sullivan, Patricia Janulewicz, Ronnie D. Horner, Nancy G. Klimas, Mitzi Nagarkatti, Efrem S. Lim, Saurabh Chatterjee
Software Mentions: 1
Published: over 3 years ago

10.1016/j.bbih.2020.100168

A review of potential microbiome-gut-brain axis mediated neurocognitive conditions in persons living with HIV
Cited by: 10
Author(s): Shannan N. Rich, Emily Klann, Vaughn Bryant, Veronica L Richards, Akemi Wijayabahu, Kendall Bryant, Volker Mai, Robert L. Cook
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.bbi.2016.04.003

Brain injury induces specific changes in the caecal microbiota of mice via altered autonomic activity and mucoprotein production
Cited by: 244
Author(s): Ashley Houlden, Marie Goldrick, David Brough, E.S. Vizi, Nikolett Lénárt, Bernadett Martinecz, Ian S. Roberts, Ádám Dénes
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.02089-20

Biotic Interactions Are More Important than Propagule Pressure in Microbial Community Invasions
Cited by: 12
Author(s): Michaeline B. N. Albright, Sanna Sevanto, La Verne Gallegos‐Graves, John Dunbar
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21062030

The Role of Biofilms Developed under Different Anthropogenic Pressure on Recruitment of Macro-Invertebrates
Cited by: 14
Author(s): Eva Cacabelos, Patrício Ramalhosa, João Canning‐Clode, Jesús S. Troncoso, Celia Olabarria, Cristina Delgado, Sergey Dobretsov, Ignácio Gestoso
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-020-01253-1

Transitions in oral and gut microbiome of HPV+ oropharyngeal squamous cell carcinoma following definitive chemoradiotherapy (ROMA LA-OPSCC study)
Cited by: 18
Author(s): Marc Oliva, Pierre H. H. Schneeberger, Victor Rey, Matthew Cho, Rachel Taylor, Aaron Richard Hansen, Kenneth W. Taylor, Andrew Bayley, Andrew Hope, Scott V. Bratman, Jolie Ringash, Simron Singh, Ilan Weinreb, Bayardo Perez-Ordoñez, John Waldron, Wei Xu, David S. Guttman, Lillian L. Siu, Bryan Coburn, Anna Spreafico
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.03456-20

SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia
Cited by: 21
Author(s): J.K. Everett, Pascha Hokama, Aoife M. Roche, Shantan Reddy, Young Sun Hwang, Lyanna R. Kessler, Abigail Glascock, Yize Li, Jillian N. Whelan, Susan R. Weiss, Scott Sherrill-Mix, Kevin D. McCormick, Samantha A. Whiteside, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Ronald G. Collman, Frederic D. Bushman
Software Mentions: 1
Published: over 3 years ago

10.1186/s13068-018-1344-0

Exploring the roles of and interactions among microbes in dry co-digestion of food waste and pig manure using high-throughput 16S rRNA gene amplicon sequencing
Cited by: 45
Author(s): Yan Jiang, Conor Dennehy, Peadar G. Lawlor, Zhenhu Hu, Matthew S. McCabe, Paul Cormican, Xinmin Zhan, Gillian E. Gardiner
Software Mentions: 1
Published: almost 6 years ago

10.3390/biom11030478

Selective Fatty Acid Retention and Turnover in the Freshwater Amphipod Pallaseopsis quadrispinosa
Cited by: 7
Author(s): Sami J. Taipale, Erwin Kers, Elina Peltomaa, John Loehr, Martin J. Kainz
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.636054

Microbial Functional Responses in Marine Biofilms Exposed to Deepwater Horizon Spill Contaminants
Cited by: 7
Author(s): Rachel L. Mugge, Jennifer L. Salerno, Leila J. Hamdan
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.00594

Vibrio and Bacterial Communities Across a Pollution Gradient in the Bay of Bengal: Unraveling Their Biogeochemical Drivers
Cited by: 26
Author(s): Gérmán A. Kopprio, Sucharit Basu Neogi, Harunur Rashid, Cecilia Alonso, Shinji Yamasaki, Boris P. Koch, Astrid Gärdes, Rubén Lara
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.610298

Assessing the Effects of β-Triketone Herbicides on the Soil Bacterial and hppd Communities: A Lab-to-Field Experiment
Cited by: 3
Author(s): Clémence Thiour-Mauprivez, Marion Devers‐Lamrani, David Bru, Jérèmie Beguet, Aymé Spor, Arnaud Mounier, Lionel Alletto, Christophe Calvayrac, Lise Barthelmebs, Fabrice Martin-Laurent
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2018.01842

16S rRNA Sequencing Reveals Relationship Between Potent Cellulolytic Genera and Feed Efficiency in the Rumen of Bulls
Cited by: 34
Author(s): Emily McGovern, David A. Kenny, Matthew S. McCabe, Claire Fitzsimons, M. McGee, A. K. Kelly, Sinéad M. Waters
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.01688

The Maturing Development of Gut Microbiota in Commercial Piglets during the Weaning Transition
Cited by: 199
Author(s): Limei Chen, Yuesong Xu, Xiaoyu Chen, Chao Fang, Liping Zhao, Feng Chen
Software Mentions: 1
Published: about 7 years ago

10.3390/biomedicines9070743

Prognostic Significance of the Microbiome and Stromal Cells Phenotype in Esophagus Squamous Cell Carcinoma
Cited by: 7
Author(s): О. В. Ковалева, P. A. Podlesnaya, М. А. Рашидова, Daria V. Samoilova, Anatoly Petrenko, В В Мочальникова, С. В. Черкасов, Yuriy A. Khlopko, А. О. Плотников, Alexei Gratchev
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.01193

Total and Potentially Active Bacterial Communities Entrapped in a Late Glacial Through Holocene Ice Core From Scarisoara Ice Cave, Romania
Cited by: 21
Author(s): Victoria Ioana Paun, Gonzalo Icaza, Paris Lavín, Constantin Marin, Alin Tudorache, Aurel Perşoiu, Cristina Dorador, Cristina Purcarea
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00534

Municipal Solid Waste Landfills Harbor Distinct Microbiomes
Cited by: 80
Author(s): Blake W. Stamps, Christopher N. Lyles, Joseph M. Suflita, Jason R. Masoner, Isabelle M. Cozzarelli, Dana W. Kolpin, Bradley S. Stevenson
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.612700

Denitrification, Nitrogen Uptake, and Organic Matter Quality Undergo Different Seasonality in Sandy and Muddy Sediments of a Turbid Estuary
Cited by: 14
Author(s): Marco Bartoli, Daniele Nizzoli, Mindaugas Žilius, Mariano Bresciani, Antonio Pusceddu, Silvia Bianchelli, Kristina Sundbäck, Artūras Razinkovas-Baziukas, Pierluigi Viaroli
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.00236

Crucial Role of Microbiota in Experimental Psoriasis Revealed by a Gnotobiotic Mouse Model
Cited by: 41
Author(s): Zuzana Stehlíková, Klara Kostovcikova, Miloslav Kverka, P Rossmann, Jiří Dvořák, Iva Novosádová, Martin Kostovčík, Štěpán Coufal, Dagmar Šrůtková, Petra Procházková, Tomáš Hudcovic, Hana Kozáková, Renata Štěpánková, Filip Rob, Kateřina Jůzlová, Jana Hercogová, Helena Tlaskalová‐Hogenová, Zuzana Jirásková Zákostelská
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/1673602

Recovery Dynamics of Intestinal Bacterial Communities of CCl4-Treated Mice with or without Mesenchymal Stem Cell Transplantation over Different Time Points
Cited by: 1
Author(s): Yanping Xu, Hua Zha, Wenyi Chen, Hong Cao, Lanjuan Li
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2017.00591

Microbial Diversity of Browning Peninsula, Eastern Antarctica Revealed Using Molecular and Cultivation Methods
Cited by: 47
Author(s): Sarita Pudasaini, John E. Wilson, Mukan Ji, Josie van Dorst, Ian Snape, Anne S. Palmer, Brendan P. Burns, Belinda C. Ferrari
Software Mentions: 1
Published: over 7 years ago

10.1002/ece3.2117

A trait-based approach reveals the feeding selectivity of a small endangered Mediterranean fish
Cited by: 11
Author(s): Pablo Rodríguez‐Lozano, Iraima Verkaik, Alberto Maceda‐Veiga, Mario Muñoz Monroy, Adolfo de Sostoa, María Rieradevall, Narcı́s Prat
Software Mentions: 1
Published: over 8 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292