10.1093/plankt/fbu052

Parental exposure to elevated pCO2 influences the reproductive success of copepods
Cited by: 29
Author(s): Gemma Cripps, Penelope K. Lindeque, Kevin J. Flynn
Software Mentions: 1
Published: over 12 years ago

10.1186/1742-9994-9-38

Do host species evolve a specific response to slave-making ants?
Cited by: 7
Author(s): Olivier Delattre, Rumsaïs Blatrix, Nicolas Châline, Stéphane Chameron, Anne Fédou, Chloé Leroy, Pierre Jaisson
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12983-016-0134-4

Feeding cessation alters host morphology and bacterial communities in the ascidian Pseudodistoma crucigaster
Cited by: 10
Author(s): Susanna López‐Legentil, Xavier Turon, Patrick M. Erwin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0188386

Altered juvenile fish communities associated with invasive Halophila stipulacea seagrass habitats in the U.S. Virgin Islands
Cited by: 15
Author(s): Lauren K. Olinger, Sarah Heidmann, Allie Durdall, Colin Howe, Tanya N. Ramseyer, Sara G. Thomas, Danielle Lasseigne, Elizabeth Brown, John S. Cassell, Michele M. Donihe, Mareike Donaji Duffing Romero, Mara A. Duke, Damon Green, Paul Hillbrand, Kristin R. Wilson Grimes, Richard S. Nemeth, Tyler B. Smith, Marilyn E. Brandt
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12983-016-0170-0

Stable isotope signatures reflect dietary diversity in European forest moths
Cited by: 9
Author(s): Marc-Oliver Adams, Carlo L. Seifert, Lisamarie Lehner, Christine Truxa, Wolfgang Wanek, Konrad Fiedler
Software Mentions: 1
Published: about 10 years ago

10.3390/molecules25173960

31P-NMR Metabolomics Revealed Species-Specific Use of Phosphorous in Trees of a French Guiana Rainforest
Cited by: 6
Author(s): Albert Gargallo‐Garriga, Jordi Sardans, Joan Llusià, Guille Peguero, Dolores Asensio, Romá Ogaya, Ifigenia Urbina, Leandro Van Langenhove, Lore T. Verryckt, Elodie A. Courtois, Clément Stahl, Oriol Grau, Otmar Urban, Ivan A. Janssens, Pau Nolis, Míriam Pérez‐Trujillo, Teodor Parella, Josep Peñuelas
Software Mentions: 1
Published: about 6 years ago

10.1093/ofid/ofy289

Effect of Commonly Used Pediatric Antibiotics on Gut Microbial Diversity in Preschool Children in Burkina Faso: A Randomized Clinical Trial
Cited by: 36
Author(s): Catherine E. Oldenburg, Ali Siè, Boubacar Coulibaly, Lucienne Ouermi, Clarisse Dah, Charlemagne Tapsoba, Till Bärnighausen, Kathryn J. Ray, Lina Zhong, Susie Cummings, Elodie Lebas, Thomas M. Lietman, Jeremy D. Keenan, Thuy Doan
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0186146

Detecting conservation benefits of marine reserves on remote reefs of the northern GBR
Cited by: 13
Author(s): Carolina Castro‐Sanguino, Yves‐Marie Bozec, Alexandra C. Dempsey, Badi R. Samaniego, Katie Lubarsky, Stefan Andrews, Valeriya Komyakova, Juan Carlos Ortíz, William D. Robbins, Philip Renaud, Peter J. Mumby
Software Mentions: 1
Published: almost 9 years ago

10.1007/s10120-020-01141-w

Long-term persistence of gastric dysbiosis after eradication of Helicobacter pylori in patients who underwent endoscopic submucosal dissection for early gastric cancer
Cited by: 14
Author(s): Toshio Watanabe, Yuji Nadatani, Wataru Suda, Akira Higashimori, Koji Otani, Shusei Fukunaga, Shuhei Hosomi, Fumio Tanaka, Yasuaki Nagami, Koichi Taira, Tetsuya Tanigawa, Geicho Nakatsu, Masahira Hattori, Yasuhiro Fujiwara
Software Mentions: 1
Published: almost 6 years ago

10.1155/2018/5284754

Colonic Mucosal Microbiota in Colorectal Cancer: A Single-Center Metagenomic Study in Saudi Arabia
Cited by: 24
Author(s): Ameen Al-Omair, Ibrahim Masoodi, Essam J. Alyamani, Abed Al-Lehibi, Adel Qutub, Khalid Alsayari, Musaad A. Altammami, Ali S. Alshanqeeti
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0043843

Diel Variability in Seawater pH Relates to Calcification and Benthic Community Structure on Coral Reefs
Cited by: 135
Author(s): Nichole N. Price, Todd R. Martz, Russell E. Brainard, Jennifer E. Smith
Software Mentions: 1
Published: about 14 years ago

10.12688/gatesopenres.13039.2

Safe and effective delivery of supplemental iron to healthy older adults: The double-blind, randomized, placebo-controlled trial protocol of the Safe Iron Study
Cited by: 1
Author(s): Erin D. Lewis, Dayong Wu, Joel B. Mason, Athar H. Chishti, John M. Leong, Kathryn Barger, Simin Nikbin Meydani, Gerald F. Combs
Software Mentions: 1
Published: over 5 years ago

10.3390/genes8120364

Delivery Mode and the Transition of Pioneering Gut-Microbiota Structure, Composition and Predicted Metabolic Function
Cited by: 50
Author(s): Noel T. Mueller, Hakdong Shin, Aline Pizoni, Isabel Cristina Ribas Werlang, Úrsula da Silveira Matte, Marcelo Zubarán Goldani, Helena Ayako Sueno Goldani, Maria Gloria Domínguez-Bello
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes10030248

Food Tracking Perspective: DNA Metabarcoding to Identify Plant Composition in Complex and Processed Food Products
Cited by: 37
Author(s): Antonia Bruno, Anna Sandionigi, Giulia Agostinetto, Lorenzo Bernabovi, Jessica Frigerio, Maurizio Casiraghi, Massimo Labra
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10050325

Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA
Cited by: 20
Author(s): Rajneesh Jaswal, Ashish Pathak, Bobby Edwards, Robert P. Lewis, John C. Seaman, Paul Stothard, Kirill Krivushin, Jochen Blom, Oliver Rupp, Ashvini Chauhan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0223744

Constraints on microbial communities, decomposition and methane production in deep peat deposits
Cited by: 11
Author(s): Laurel A. Kluber, Eric R. Johnston, Samantha A. Allen, J. Nicholas Hendershot, P. J. Hanson, Christopher W. Schadt
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0193724

Exogenous application of the plant signalers methyl jasmonate and salicylic acid induces changes in volatile emissions from citrus foliage and influences the aggregation behavior of Asian citrus psyllid (Diaphorina citri), vector of Huanglongbing
Cited by: 29
Author(s): Joseph M. Patt, Paul S. Robbins, Randy P. Niedz, Greg McCollum, Rocco T. Alessandro
Software Mentions: 1
Published: over 8 years ago

10.1590/1678-4685-GMB-2017-0255

Leaf-associated bacterial microbiota of coffee and its correlation with manganese and calcium levels on leaves
Cited by: 4
Author(s): Leandro Pio de Sousa, Marcio da da José Silva, Jorge Maurı́cio Costa Mondego
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-014-0487-y

Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing
Cited by: 107
Author(s): Kyle Bittinger, Emily S. Charlson, Dorothy E. Loy, David J. Shirley, Andrew R. Haas, Alice Laughlin, Yanjie Yi, Gary D. Wu, James D. Lewis, Ian Frank, Edward Cantu, Joshua M. Diamond, Jason D. Christie, Ronald G. Collman, Frederic D. Bushman
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0048522

Diversity and Composition of Demersal Fishes along a Depth Gradient Assessed by Baited Remote Underwater Stereo-Video
Cited by: 65
Author(s): Vincent Zintzen, Marti J. Anderson, Clive D. Roberts, Euan S. Harvey, Andrew L. Stewart, Carl D. Struthers
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0072598

The Impact of Physical Disturbance and Increased Sand Burial on Clonal Growth and Spatial Colonization of Sporobolus virginicus in a Coastal Dune System
Cited by: 18
Author(s): Elena Balestri, Claudio Lardicci
Software Mentions: 1
Published: about 13 years ago

10.1186/s13059-019-1879-9

Gut-derived Enterococcus faecium from ulcerative colitis patients promotes colitis in a genetically susceptible mouse host
Cited by: 64
Author(s): Jun Seishima, Noriho Iida, Kazuya Kitamura, Masahiro Yutani, Ziyu Wang, Akihiro Seki, Taro Yamashita, Yoshio Sakai, Masao Honda, Takashi Kagaya, Yukihiro Shirota, Yukako Fujinaga, Eishiro Mizukoshi
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0103641

The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae
Cited by: 67
Author(s): Christos Giatsis, Detmer Sipkema, Hauke Smidt, J.A.J. Verreth, Marc Verdegem
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0142289

Macroalgal Composition Determines the Structure of Benthic Assemblages Colonizing Fragmented Habitats
Cited by: 22
Author(s): Miguel G. Matias, Francisco Arenas, Marcos Rubal, Isabel Sousa-Pinto
Software Mentions: 1
Published: almost 11 years ago

10.1515/biol-2021-0024

The impact of sewage sludge on the fungal communities in the rhizosphere and roots of barley and on barley yield
Cited by: 1
Author(s): Katarína Ondreičková, Michaela Piliarová, Lenka Klčová, Alžběta Žofajová, Jozef Gubiš, Miroslav Horník, Marcela Gubišová, Martina Hudcovicová, Ján Kraic
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0169877

Evaluating the Impact of DNA Extraction Method on the Representation of Human Oral Bacterial and Fungal Communities
Cited by: 106
Author(s): Anna Vesty, Kristi Biswas, Michael W. Taylor, Kim Gear, Richard Douglas
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-020-02209-7

Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome
Cited by: 9
Author(s): Emma K. Accorsi, Eric A. Franzosa, Tiffany Y. Hsu, Regina Joice Cordy, Ayala Maayan-Metzger, Hanaa Jaber, Aylana Reiss-Mandel, Madeleine Kline, Casey DuLong, Marc Lipsitch, Gili Regev‐Yochay, Curtis Huttenhower
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0158785

Density of Key-Species Determines Efficiency of Macroalgae Detritus Uptake by Intertidal Benthic Communities
Cited by: 15
Author(s): Agnes M. L. Karlson, Clarisse Niemand, Candida Savage, Conrad A. Pilditch
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0198860

The spread of Kalmia angustifolia on black spruce forest cutovers contributes to the spatial heterogeneity of soil resources
Cited by: 4
Author(s): Gilles Joanisse, Robert L. Bradley, Caroline M. Preston
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0210203

Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves
Cited by: 15
Author(s): Raies A. Mir, Michael D. Kleinhenz, Heather K. Allen, Indira T. Kudva
Software Mentions: 1
Published: over 7 years ago

10.1186/s13073-016-0299-7

An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis
Cited by: 528
Author(s): Jun Chen, Kerry Wright, John M. Davis, Patricio Jeraldo, Eric Marietta, Joseph A. Murray, Heidi Nelson, Eric L. Matteson, Veena Taneja
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0233189

Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific
Cited by: 17
Author(s): Junya Hirai, Aiko Tachibana, Atsushi Tsuda
Software Mentions: 1
Published: over 6 years ago

10.1186/s13073-016-0357-1

Altered gut microbiota in female mice with persistent low body weights following removal of post-weaning chronic dietary restriction
Cited by: 19
Author(s): Jun Chen, Yoshitaka Toyomasu, Yujiro Hayashi, David R. Linden, Joseph H. Szurszewski, Heidi Nelson, Gianrico Farrugia, Purna C. Kashyap, Nicholas Chia, Tamás Ördög
Software Mentions: 1
Published: about 10 years ago

10.1186/s13073-018-0580-z

T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency
Cited by: 27
Author(s): Erik L. Clarke, Andrew Jesse Connell, Emmanuelle Six, Nadia A. Kadry, Arwa Abbas, Young Sun Hwang, J.K. Everett, Casey E. Hofstaedter, Rebecca Marsh, Myriam Armant, Judith R. Kelsen, Luigi D. Notarangelo, Ronald G. Collman, Salima Hacein‐Bey‐Abina, Donald B. Kohn, Marina Cavazzana, Alain Fischer, David A. Williams, Sung-Yun Pai, Frederic D. Bushman
Software Mentions: 1
Published: about 8 years ago

10.1186/s13073-020-00765-y

Strain-level epidemiology of microbial communities and the human microbiome
Cited by: 65
Author(s): Yan Yan, Long H. Nguyen, Eric A. Franzosa, Curtis Huttenhower
Software Mentions: 1
Published: about 6 years ago

10.1186/s13073-021-00840-y

Guild-based analysis for understanding gut microbiome in human health and diseases
Cited by: 71
Author(s): Guojun Wu, Naisi Zhao, Chenhong Zhang, Yan Y. Lam, Liping Zhao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0005975

A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children
Cited by: 49
Author(s): Susannah J. Salter, Claudia Turner, Wanitda Watthanaworawit, Marcus C. de Goffau, Josef Wagner, Julian Parkhill, Stephen D. Bentley, David Green, François Nosten, Paul Turner
Software Mentions: 1
Published: about 9 years ago

10.1098/rsif.2018.0520

Inferring locomotor behaviours in Miocene New World monkeys using finite element analysis, geometric morphometrics and machine-learning classification techniques applied to talar morphology
Cited by: 20
Author(s): Thomas A. Püschel, Jordi Marcè-Nogué, Justin T. Gladman, René Bobe, William I. Sellers
Software Mentions: 1
Published: about 8 years ago

10.1098/rsif.2015.0608

Competition for space during bacterial colonization of a surface
Cited by: 54
Author(s): Diarmuid Padraig Lloyd, Rosalind J. Allen
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pntd.0002453

Microarray Analysis of Microbiota of Gingival Lesions in Noma Patients
Cited by: 28
Author(s): Antoine Huyghe, Patrice François, Andrea Mombelli, Manuela Tangomo, Myriam Girard, Denise Baratti-Mayer, Ignacio Bolívar, Didier Pittet, Jacques Schrenzel
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pntd.0008531

Dengue infection modulates locomotion and host seeking in Aedes aegypti
Cited by: 28
Author(s): Anaïs Karine Tallon, Marcelo G. Lorenzo, Luciano Andrade Moreira, Luís Eduardo Martinez Villegas, Sharon R. Hill, Rickard Ignell
Software Mentions: 1
Published: about 6 years ago

10.1007/s11357-021-00375-5

Maternal stress programs a demasculinization of glutamatergic transmission in stress-related brain regions of aged rats
Cited by: 5
Author(s): Rémy Verhaeghe, Vance D. Gao, Sara Morley‐Fletcher, Hammou Bouwalerh, Gilles Van Camp, Francesca Cisani, Ferdinando Nicoletti, Stefania Maccari
Software Mentions: 1
Published: over 5 years ago

10.1093/gigascience/gix050

Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients
Cited by: 57
Author(s): Qing-Yu He, Yuan Gao, Zhuye Jie, Xinlei Yu, Janne Marie Laursen, Liang Xiao, Ying Liu, Lingling Li, Faming Zhang, Qiang Feng, Xiaoping Li, Jinghong Yu, Chuan Liu, Ping Lan, Ting Yan, Xin Liu, Xun Xu, Huanming Yang, Jian Wang, Lise Madsen, Susanne Brix, Jianping Wang, Karsten Kristiansen, Huijue Jia
Software Mentions: 1
Published: over 9 years ago

10.1016/j.ophtha.2020.02.014

Post-antibiotic Ocular Surface Microbiome in Children: A Cluster-Randomized Trial
Cited by: 12
Author(s): Thuy Doan, Armin Hinterwirth, Lee Worden, Ahmed M. Arzika, Ramatou Maliki, Cindi Chen, Lina Zhong, Zhaoxia Zhou, Nisha R. Acharya, Travis C. Porco, Jeremy D. Keenan, Thomas M. Lietman
Software Mentions: 1
Published: about 6 years ago

10.1093/gigascience/gix089

Taxonomic structure and functional association of foxtail millet root microbiome
Cited by: 147
Author(s): Tao Jin, Yayu Wang, Huang Yue-ying, Jin Xu, Pengfan Zhang, Nian Wang, Xin Liu, Haiyan Chu, Guang Liu, Honggang Jiang, Yuzhen Li, Jing Xu, Karsten Kristiansen, Liang Xiao, Yunzeng Zhang, Gengyun Zhang, Guohua Du, Houbao Zhang, Hong-Feng Zou, Haifeng Zhang, Zhuye Jie, Suisha Liang, Huijue Jia, Jingwang Wan, Dechun Lin, Jinying Li, Guangyi Fan, Huanming Yang, Jian Wang, Yang Bai, Xun Xu
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pcbi.1005300

Glycoside Hydrolases across Environmental Microbial Communities
Cited by: 76
Author(s): Renaud Berlemont, Adam C. Martiny
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pcbi.1008913

A statistical model for describing and simulating microbial community profiles
Cited by: 19
Author(s): Siyuan Ma, Boyu Ren, Himel Mallick, Yo Sup Moon, Emma Schwager, Sagun Maharjan, Timothy L. Tickle, Yiren Lu, Rachel N. Carmody, Eric A. Franzosa, Lucas Janson, Curtis Huttenhower
Software Mentions: 1
Published: about 5 years ago

10.1111/geb.12783

Traditional plant functional groups explain variation in economic but not size‐related traits across the tundra biome
Cited by: 45
Author(s): Haydn J. D. Thomas, Isla H. Myers‐Smith, Anne D. Bjorkman, Sarah C. Elmendorf, Daan Blok, Johannes H. C. Cornelissen, Bruce C. Forbes, Robert D. Hollister, Signe Normand, Janet S. Prevéy, Christian Rixen, Gabriela Schaepman‐Strub, Martin Wilmking, Sonja Wipf, William K. Cornwell, Jens Kattge, Scott J. Goetz, Kevin C. Guay, Juha M. Alatalo, Alba Anadon‐Rosell, Sandra Angers‐Blondin, L. T. Berner, Robert G. Björk, Agata Buchwał, Allan Buras, Michele Carbognani, Katie Christie, Laura Siegwart Collier, Elisabeth J. Cooper, Anu Eskelinen, Esther R. Frei, Oriol Grau, Paul Grogan, Martin Hallinger, M.M.P.D. Heijmans, Luise Hermanutz, James M. Hudson, Karl Hülber, Maitane Iturrate‐Garcia, Colleen M. Iversen, Francesca Jaroszynska, Jill F. Johnstone, Elina Kaarlejärvi, Aino Kulonen, Laurent J. Lamarque, Esther Lévesque, Chelsea J. Little, Anders Michelsen, Ann Milbau, Jacob Nabe‐Nielsen, Sigrid Schøler Nielsen, Josep M. Ninot, Steven F. Oberbauer, Johan Olofsson, В. Г. Онипченко, Alessandro Petraglia, Sabine B. Rumpf, Philipp Semenchuk, Nadejda A. Soudzilovskaia, Marko J. Spasojevic, James D. M. Speed, Ken D. Tape, Mariska te Beest, Marcello Tomaselli, Andrew J. Trant, Urs A. Treier, Susanna Venn, Tage Vowles, Stef Weijers, Tara Zamin, Owen K. Atkin, Michael Bahn, Benjamin Blonder, Giandiego Campetella, Bruno E. L. Cerabolini, F. Stuart Chapin, Matteo Dainese, Franciska T. de Vries, Sandra Dı́az, W. Green, Robert B. Jackson, Peter Manning, Ülo Niinemets, Wim A. Ozinga, Josep Peñuelas, Peter B. Reich, Brandon S. Schamp, Serge Sheremetiev, Peter M. van Bodegom
Software Mentions: 1
Published: almost 8 years ago

10.1080/19490976.2020.1785251

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients
Cited by: 52
Author(s): Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E. Fouts, Bernd Schnabl
Software Mentions: 1
Published: about 6 years ago

10.1080/19490976.2020.1758290

The protective effect of <i>Bifidobacterium bifidum</i> G9-1 against mucus degradation by <i>Akkermansia muciniphila</i> following small intestine injury caused by a proton pump inhibitor and aspirin
Cited by: 38
Author(s): Tsutomu Yoshihara, Yosuke Oikawa, Takayuki Kato, Takaomi Kessoku, Takashi Kobayashi, Shingo Kato, Noboru Misawa, Keiichi Ashikari, Akiko Fuyuki, Hidenori Ohkubo, Takuma Higurashi, Yoko Tateishi, Yoshiki Tanaka, Shunji Nakajima, Hiroshi Ohno, Koichiro Wada, Atsushi Nakajima
Software Mentions: 1
Published: over 6 years ago

10.1080/19490976.2020.1830694

Characterization of the intestinal microbiota during <i>Citrobacter rodentium</i> infection in a mouse model of infection-triggered Parkinson’s disease
Cited by: 11
Author(s): Tyler Cannon, Anshul Sinha, Louis-Éric Trudeau, Corinne F. Maurice, Samantha Gruenheid
Software Mentions: 1
Published: almost 6 years ago

10.1080/19490976.2020.1826747

Influence of probiotic supplementation on the developing microbiota in human preterm neonates
Cited by: 24
Author(s): Niels van Best, Sonja Trepels-Kottek, Paul H. M. Savelkoul, Thorsten Orlikowsky, Mathias W. Hornef, John Penders
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.3000788

Glycan cross-feeding supports mutualism between Fusobacterium and the vaginal microbiota
Cited by: 28
Author(s): Kavita Agarwal, Linda J. Robinson, Somya Aggarwal, Lynne Foster, Ariel Hernandez-Leyva, Hueylie Lin, Brett A. Tortelli, Valerie P. O’Brien, Liza Miller, Andrew L. Kau, Hilary Reno, Nicole M. Gilbert, Warren G. Lewis, Amanda L. Lewis
Software Mentions: 1
Published: about 6 years ago

10.1080/19490976.2020.1840766

Host miRNA-21 promotes liver dysfunction by targeting small intestinal <i>Lactobacillus</i> in mice
Cited by: 22
Author(s): Andrea M. Santos, Marta B. Afonso, Ricardo S. Ramiro, David Pires, Madalena Pimentel, Rui E. Castro, Cecília M. P. Rodrigues
Software Mentions: 1
Published: almost 6 years ago

10.1111/jsr.12920

A brief period of sleep deprivation leads to subtle changes in mouse gut microbiota
Cited by: 22
Author(s): Sahar El Aidy, Youri G Bolsius, Frank Raven, Robbert Havekes
Software Mentions: 1
Published: about 7 years ago

10.1186/s13023-020-01612-4

Gut microbiome signature of Viliuisk encephalomyelitis in Yakuts includes an increase in microbes linked to lean body mass and eating behaviour
Cited by: 2
Author(s): Veronika S Kuznetsova, Alexander Tyakht, Lyudmila V Akhmadishina, Vera Odintsova, Natalia Klimenko, Elena S. Kostryukova, Maria T. Vakhitova, Tatiana V. Grigoryeva, Sergey Malanin, Vsevolod A. Vladimirtsev, Raisa S. Nikitina, Viktor P. Volok, Vladimir L. Osakovskiy, Tatyana M. Sivtseva, F.A. Platonov, Dmitry Alexeev, Galina G. Karganova
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep12814

Morphological and community changes of turf algae in competition with corals
Cited by: 10
Author(s): Neidy P. Cetz-Navarro, Lizette I. Quan-Young, Julio Espinoza-Ávalos
Software Mentions: 1
Published: about 11 years ago

10.1038/srep14233

Regional microbial signatures positively correlate with differential wine phenotypes: evidence for a microbial aspect to terroir
Cited by: 191
Author(s): Sarah Knight, Steffen Klaere, Bruno Fedrizzi, Matthew R. Goddard
Software Mentions: 1
Published: about 11 years ago

10.1038/srep16191

The functional gene composition and metabolic potential of coral-associated microbial communities
Cited by: 48
Author(s): Yanying Zhang, Juan Ling, Qingsong Yang, Chongqing Wen, Qingyun Yan, Hongyan Sun, Joy D. Van Nostrand, Zhou Shi, Jizhong Zhou, Jinyun Dong
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16293

Ocean acidification and global warming impair shark hunting behaviour and growth
Cited by: 107
Author(s): Jennifer C. A. Pistevos, Ivan Nagelkerken, Tullio Rossi, Maxime Olmos, Sean D. Connell
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep10803

Chemical mediation of coral larval settlement by crustose coralline algae
Cited by: 157
Author(s): Jan Tebben, Cherie A. Motti, Nachshon Siboni, Dianne M. Tapiolas, Andrew P. Negri, Peter J. Schupp, Makoto Kikuchi, Masayuki Hatta, Peter D. Steinberg, Tilmann Harder
Software Mentions: 1
Published: over 11 years ago

10.1186/s12967-021-03040-9

Alterations of gut microbiota in gestational diabetes patients during the second trimester of pregnancy in the Shanghai Han population
Cited by: 11
Author(s): Yao Su, Hongkun Wang, Xu-Pei Gan, Li Chen, Yannan Cao, De-Cui Cheng, Dong-Yao Zhang, Wen Yu, Feifei Li, Xiao Xu
Software Mentions: 1
Published: about 5 years ago

10.1038/srep17793

Effects of sample storage and shell orientation on LA-ICPMS trace element measurements on deep-sea mussels
Cited by: 7
Author(s): Luciana Génio, Klaus Simon, Steffen Kiel, Marina R. Cunha
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep19536

Soil microbial responses to forest floor litter manipulation and nitrogen addition in a mixed-wood forest of northern China
Cited by: 14
Author(s): Osbert Jianxin Sun, Zhao Jing, Yeming You
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20120

Altered rainfall patterns increase forb abundance and richness in native tallgrass prairie
Cited by: 44
Author(s): Sydney K. Jones, Scott L. Collins, John M. Blair, Melinda D. Smith, Alan K. Knapp
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21236

How to be a dioecious fig: Chemical mimicry between sexes matters only when both sexes flower synchronously
Cited by: 21
Author(s): Martine Hossaert‐McKey, Magali Proffit, Catherine Soler, C. Chen, Jean‐Marie Bessière, Bertrand Schatz, Renée M. Borges
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23133

Birth mode-dependent association between pre-pregnancy maternal weight status and the neonatal intestinal microbiome
Cited by: 109
Author(s): Noel T. Mueller, Hakdong Shin, Aline Pizoni, Isabel Cristina Ribas Werlang, Úrsula da Silveira Matte, Marcelo Zubarán Goldani, Helena Ayako Sueno Goldani, Maria Gloria Domínguez-Bello
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23908

Bacterial community associated to the pine wilt disease insect vectors Monochamus galloprovincialis and Monochamus alternatus
Cited by: 25
Author(s): Marta Alves, Anabela Pereira, Pedro Matos, Joana Henriques, Cláudia S. L. Vicente, Takuya Aikawa, Koichi Hasegawa, Francisco X. Nascimento, Manuel Mota, António Correia, Isabel Henriques
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23561

Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome
Cited by: 252
Author(s): Cintia S. de Paiva, Dan B. Jones, Michael E. Stern, Fang Bian, Quianta Moore, Shani Corbiere, Charles F. Streckfus, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Stephen C. Pflugfelder
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24857

Disrupted progression of the intestinal microbiota with age in children with cystic fibrosis
Cited by: 71
Author(s): Shaun Nielsen, Bronwen Needham, Steven T. Leach, Andrew S. Day, Adam Jaffé, Torsten Thomas, Chee Y. Ooi
Software Mentions: 1
Published: over 10 years ago

10.1038/srep25894

Simulated coal spill causes mortality and growth inhibition in tropical marine organisms
Cited by: 15
Author(s): Kathryn Berry, Mia O. Hoogenboom, Florita Flores, Andrew P. Negri
Software Mentions: 1
Published: over 10 years ago

10.1038/srep27572

Accelerated dysbiosis of gut microbiota during aggravation of DSS-induced colitis by a butyrate-producing bacterium
Cited by: 136
Author(s): Qianpeng Zhang, Yanqiu Wu, Jing Wang, Guojun Wu, Wenmin Long, Zhengsheng Xue, Linghua Wang, Xiaojun Zhang, Xiaoyan Pang, Yuwu Zhao, Liping Zhao, Chenhong Zhang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep28981

Quantitative and compositional responses of ammonia-oxidizing archaea and bacteria to long-term field fertilization
Cited by: 25
Author(s): Cong Xue, Xu Zhang, Chen Zhu, Jun Zhao, Ping Zhu, Chang Peng, Ning Ling
Software Mentions: 1
Published: over 10 years ago

10.1038/srep29198

Temporal windows of reproductive opportunity reinforce species barriers in a marine broadcast spawning assemblage
Cited by: 17
Author(s): Carla A. Monteiro, Cristina Paulino, Rita Jacinto, Ester A. Serrão, Gareth A. Pearson
Software Mentions: 1
Published: over 10 years ago

10.1038/srep30616

Comparison and Interpretation of Taxonomical Structure of Bacterial Communities in Two Types of Lakes on Yun-Gui plateau of China
Cited by: 22
Author(s): Maozhen Han, Yanhai Gong, Chunyu Zhou, Junqian Zhang, Zhi Wang, Kang Ning
Software Mentions: 1
Published: about 10 years ago

10.1038/srep30893

A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research
Cited by: 208
Author(s): Karina Gajardo, Ana Rodiles, Trond M. Kortner, Åshild Krogdahl, Anne Marie Bakke, Daniel L. Merrifield, Henning Sørum
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31413

Enemies with benefits: parasitic endoliths protect mussels against heat stress
Cited by: 31
Author(s): Gerardo I. Zardi, Katy R. Nicastro, Christopher D. McQuaid, Terence P. T. Ng, Justin A. Lathlean, Laurent Seuront
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32032

pH drop impacts differentially skin and gut microbiota of the Amazonian fish tambaqui (Colossoma macropomum)
Cited by: 100
Author(s): François‐Étienne Sylvain, Bachar Cheaib, Martin S. Llewellyn, Tiago Gabriel Correia, Daniel Barros Fagundes, Adalberto Luı́s Val, Nicolas Derôme
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31775

Joint effects of pregnancy, sociocultural, and environmental factors on early life gut microbiome structure and diversity
Cited by: 112
Author(s): Albert M. Levin, Alexandra R. Sitarik, Suzanne Havstad, Kei E. Fujimura, Ganesa Wegienka, Andrea E. Cassidy‐Bushrow, Hae Jin Kim, Edward M. Zoratti, Nicholas W. Lukacs, Homer A. Boushey, Dennis R. Ownby, Susan V. Lynch, Christine Cole Johnson
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32263

Population and life-stage specific sensitivities to temperature and salinity stress in barnacles
Cited by: 16
Author(s): Ali Nasrolahi, Jonathan N. Havenhand, Anna-Lisa Wrange, Christian Pansch
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33350

Effects of captivity and artificial breeding on microbiota in feces of the red-crowned crane (Grus japonensis)
Cited by: 47
Author(s): Yuwei Xie, Pu Xia, Hui Wang, Yu H, John P. Giesy, Yimin Zhang, Miguel A. Mora, Xiaowei Zhang
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33726

Lactobacillus plantarum attenuates anxiety-related behavior and protects against stress-induced dysbiosis in adult zebrafish
Cited by: 107
Author(s): Daniel R. Davis, Holly M. Doerr, Agata K. Grzelak, Susheel Bhanu Busi, Eldin Jašarević, Aaron C. Ericsson, Elizabeth C. Bryda
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33965

Probiotic legacy effects on gut microbial assembly in tilapia larvae
Cited by: 46
Author(s): Christos Giatsis, Detmer Sipkema, Javier Ramiro-García, Gianina M. Bacanu, Jason Abernathy, J.A.J. Verreth, Hauke Smidt, Marc Verdegem
Software Mentions: 1
Published: about 10 years ago

10.1038/srep34434

Temporal dynamics of hot desert microbial communities reveal structural and functional responses to water input
Cited by: 61
Author(s): Alacia Armstrong, Ángel Valverde, Jean‐Baptiste Ramond, Thulani P. Makhalanyane, Janet Jansson, D. W. Hopkins, Thomas J. Aspray, Mary Seely, Marla Trindade, Don A. Cowan
Software Mentions: 1
Published: about 10 years ago

10.1038/srep34456

Allochthonous carbon is a major regulator to bacterial growth and community composition in subarctic freshwaters
Cited by: 42
Author(s): Toni Roiha, Sari Peura, Mathieu Cusson, Milla Rautio
Software Mentions: 1
Published: about 10 years ago

10.1038/srep34544

Biodiversity loss and turnover in alternative states in the Mediterranean Sea: a case study on meiofauna
Cited by: 34
Author(s): Silvia Bianchelli, Emanuela Buschi, Roberto Danovaro, Antonio Pusceddu
Software Mentions: 1
Published: about 10 years ago

10.1038/srep35405

Chronic Sleep Disruption Alters Gut Microbiota, Induces Systemic and Adipose Tissue Inflammation and Insulin Resistance in Mice
Cited by: 280
Author(s): Valeriy Poroyko, Alba Carreras, Abdelnaby Khalyfa, Ahamed Khalyfa, Vanessa Leone, Eduard Peris, Isaac Almendros, Alex Gileles‐Hillel, Zhuanhong Qiao, Nathaniel Hubert, Ramón Farré, Eugene B. Chang, David Gozal
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12967-020-02579-3

Revealing oral microbiota composition and functionality associated with heavy cigarette smoking
Cited by: 25
Author(s): Mohammad Tahseen Al Bataineh, Nihar Ranjan Dash, Mohammed Elkhazendar, Dua’a Mohammad Hasan Alnusairat, Islam Mohammad Ismail Darwish, Mohamed S. Al-Hajjaj, Qutayba Hamid
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep36137

Sex differences in colonization of gut microbiota from a man with short-term vegetarian and inulin-supplemented diet in germ-free mice
Cited by: 37
Author(s): Jingjing Wang, Xiaoyan Pang, Liping Zhao, Ling Tian, Xingpeng Wang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep37359

Declines in benthic macroinvertebrate community metrics and microphytobenthic biomass in an estuarine lake following enrichment by hippo dung
Cited by: 26
Author(s): Jessica Dawson, Deena Pillay, Peter Jean Roberts, Renzo Perissinotto
Software Mentions: 1
Published: almost 10 years ago

10.3390/plants8110445

Whey: The Soil Bio-Community Enhancer That Selectively Controls Root-Knot Nematodes
Cited by: 4
Author(s): Nikoletta Ntalli, Maria A. Tsiafouli, Kaliopi Tzani, Olga Mavridi, Chrisostomos Oplos, Urania Menkissoglu‐Spiroudi, Nikolaos Monokrousos
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep38599

Gut microbiota from metabolic disease-resistant, macrophage-specific RIP140 knockdown mice improves metabolic phenotype and gastrointestinal integrity
Cited by: 4
Author(s): Yi Lin, Emmanuel Montassier, Dan Knights, Li‐Na Wei
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep39038

Effects of light attenuation on the sponge holobiont- implications for dredging management
Cited by: 38
Author(s): Mari Carmen Pineda, Brian Strehlow, Alan Duckworth, Jason Doyle, Ross Jones, Nicole S. Webster
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep08940

Extensive phenotypic plasticity of a Red Sea coral over a strong latitudinal temperature gradient suggests limited acclimatization potential to warming
Cited by: 65
Author(s): Yvonne Sawall, Abdulmohsin Al-Sofyani, Sönke Hohn, Eulalia Banguera-Hinestroza, Christian R. Voolstra, Martin Wahl
Software Mentions: 1
Published: over 11 years ago

10.1038/srep11932

Trace element fingerprinting of cockle (Cerastoderma edule) shells can reveal harvesting location in adjacent areas
Cited by: 41
Author(s): Fernando Ricardo, Luciana Génio, Miguel C. Leal, Rui Albuquerque, Henrique Queiroga, Rui Rosa, Ricardo Calado
Software Mentions: 1
Published: over 11 years ago

10.1038/srep39114

Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes
Cited by: 54
Author(s): Paul G. Dennis, Bernardino Virdis, Inka Vanwonterghem, Alif Hassan, Philip Hugenholtz, Gene W. Tyson, Korneel Rabaey
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep41766

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites
Cited by: 76
Author(s): Hongwei Liu, Lília C. Carvalhais, Peer M. Schenk, Paul G. Dennis
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43103

Suppression of Fusarium wilt of cucumber by ammonia gas fumigation via reduction of Fusarium population in the field
Cited by: 32
Author(s): Jun Zhao, Ming Zhong, Xu Zhang, Cong Xue, Chenzhi Zhang, Tengfei Ma, Shusheng Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43247

Effects of reciprocal transplantation on the microbiome and putative nitrogen cycling functions of the intertidal sponge, Hymeniacidon heliophila
Cited by: 35
Author(s): Brooke L. Weigel, Patrick M. Erwin
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43600

Water flow buffers shifts in bacterial community structure in heat-stressed Acropora muricata
Cited by: 21
Author(s): Sonny T. M. Lee, Simon K. Davy, Sen‐Lin Tang, Paul S. Kench
Software Mentions: 1
Published: over 9 years ago