cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/microorganisms8111828

Phosphorus Reduces Negative Effects of Nitrogen Addition on Soil Microbial Communities and Functions
Cited by: 25
Author(s): Zongwei Xia, Jingyi Yang, Changpeng Sang, Xu Wang, Lin Sun, Ping Jiang, Chao Wang, Edith Bai
Software Mentions: 1
Published: about 4 years ago

10.1128/AEM.01203-20

Three Candidate Probiotic Strains Impact Gut Microbiota and Induce Anergy in Mice with Cow's Milk Allergy
Cited by: 15
Author(s): Nathalie Esber, Aurélie Mauras, Johanne Delannoy, Chantal Labellie, Camille Mayeur, Marie-Aurore Caillaud, Toma Kashima, Landry Souchaud, Ioannis Nicolis, Nathalie Kapel, Anne‐Judith Waligora‐Dupriet
Software Mentions: 1
Published: about 4 years ago

10.1128/AEM.01194-20

The Interactive Effects of Crude Oil and Corexit 9500 on Their Biodegradation in Arctic Seawater
Cited by: 10
Author(s): Taylor R. Gofstein, Matthew J. Perkins, Jennifer A. Field, Mary Beth Leigh
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-017-09281-3

Fungal community assemblage of different soil compartments in mangrove ecosystem
Cited by: 30
Author(s): Dinesh Sanka Loganathachetti, Anbu Poosakkannu, Muthuraman Sundararaman
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-08161-0

A biomechanical approach to understand the ecomorphological relationship between primate mandibles and diet
Cited by: 22
Author(s): Jordi Marcè-Nogué, Thomas A. Püschel, Thomas M. Kaiser
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms8091363

Faecal Microbiota of Dogs Offered a Vegetarian Diet with or without the Supplementation of Feather Meal and either Cornmeal, Rye or Fermented Rye: A Preliminary Study
Cited by: 6
Author(s): Julia Hankel, Amr Abd El‐Wahab, Richard Grone, Birgit Keller, Eric Galvez, Till Strowig, Christian Visscher
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-017-10494-9

Temporal Stability and Composition of the Ocular Surface Microbiome
Cited by: 152
Author(s): Jerome Ozkan, Shaun Nielsen, Cristina Díez‐Vives, Minas T. Coroneo, Torsten Thomas, Mark Willcox
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-09844-4

Comparison of vaginal microbiota sampling techniques: cytobrush versus swab
Cited by: 21
Author(s): Anita Mitra, David A. MacIntyre, Vishakha Mahajan, Yun Sok Lee, Ann Smith, Julian R. Marchesi, Deirdre Lyons, Phillip R. Bennett, Maria Kyrgiou
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms7100392

Mediterranean Native Leguminous Plants: A Reservoir of Endophytic Bacteria with Potential to Enhance Chickpea Growth under Stress Conditions
Cited by: 17
Author(s): Clarisse Brı́gido, Esther Menéndez, Ana Paço, Bernard R. Glick, Anabela D. F. Belo, Maria R. Félix, Marina Vieira de Carvalho
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-10231-2

Microbial communities in marine sediments modify success of an invasive macrophyte
Cited by: 32
Author(s): Paul E. Gribben, Shaun Nielsen, Justin R. Seymour, Daniel Bradley, Matthew N. West, Torsten Thomas
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms8020170

Revealing the Variation and Stability of Bacterial Communities in Tomato Rhizosphere Microbiota
Cited by: 33
Author(s): Zhiqiang Cheng, Shaonan Lei, Ye Li, Wei Huang, Rongqin Ma, Juan Xiong, Ting Zhang, Lingyue Jin, Hafeez Ul Haq, Xiaohong Xu, Baoyu Tian
Software Mentions: 1
Published: almost 5 years ago

10.3390/microorganisms8091278

Effect of Sample Collection (Manual Expression vs. Pumping) and Skimming on the Microbial Profile of Human Milk Using Culture Techniques and Metataxonomic Analysis
Cited by: 11
Author(s): Maricela Rodríguez‐Cruz, Claudio Alba, Marina Aparicio, María Ángeles Checa, Leónides Fernández, Juan Miguel Díaz Rodríguez
Software Mentions: 1
Published: over 4 years ago

10.1128/mSystems.00528-20

Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV
Cited by: 1
Author(s): Bryn C. Taylor, Kelly C. Weldon, Ronald J. Ellis, Donald Franklin, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Jennifer E. Iudicello, Robert K. Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin D. Swafford, Pieter C. Dorrestein, Rob Knight
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-017-09973-w

Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach
Cited by: 33
Author(s): Robert M. Starke, Felipe Bastida, J. Abadía, Carlos Garcı́a, Emilio Nicolás, Nico Jehmlich
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10818-9

Applications of unmanned aerial vehicles in intertidal reef monitoring
Cited by: 84
Author(s): Sarah L. Murfitt, Blake M. Allan, Alecia Bellgrove, Alex Rattray, Mary Young, Daniel Ierodiaconou
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10834-9

Aging-related changes in the diversity of women’s skin microbiomes associated with oral bacteria
Cited by: 122
Author(s): Nakako Shibagaki, Wataru Suda, Cécile Clavaud, Philippe Bastien, Lena Takayasu, Erica Iioka, Rina Kurokawa, Naoko Yamashita, Yasue Hattori, Chie Shindo, Lionel Breton, Masahira Hattori
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11069-4

Gender-based differences in host behavior and gut microbiota composition in response to high fat diet and stress in a mouse model
Cited by: 93
Author(s): Laura C. Bridgewater, Chenhong Zhang, Yanqiu Wu, Weiwei Hu, Qianpeng Zhang, Jing Wang, Shengtian Li, Liping Zhao
Software Mentions: 1
Published: about 7 years ago

10.1128/AEM.02427-20

Dilution-to-Stimulation/Extinction Method: a Combination Enrichment Strategy To Develop a Minimal and Versatile Lignocellulolytic Bacterial Consortium
Cited by: 23
Author(s): Laura Díaz-García, Sixing Huang, Cathrin Spröer, R. Sierra, Boyke Bunk, Jörg Overmann, Diego Javier Jiménez
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms9081755

The Effect of Common Viral Inactivation Techniques on 16S rRNA Amplicon-Based Analysis of the Gut Microbiota
Cited by: 0
Author(s): Zachary L. McAdams, Kevin L. Gustafson, Aaron C. Ericsson
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-11441-4

Introduced ascidians harbor highly diverse and host-specific symbiotic microbial assemblages
Cited by: 31
Author(s): James S. Evans, Patrick M. Erwin, Noa Shenkar, Susanna López‐Legentil
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-017-0345-8

Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing
Cited by: 42
Author(s): Petra Schwendner, Alexander Mahnert, Kaisa Koskinen, Christine Moissl-Eichinger, Simon Barczyk, Reinhard Wirth, Gabriele Berg, Petra Rettberg
Software Mentions: 1
Published: about 7 years ago

10.3390/nu12040937

Randomised Double-Blind Placebo-Controlled Trial of Inulin with Metronidazole in Non-Alcoholic Fatty Liver Disease (NAFLD)
Cited by: 31
Author(s): Clara Yieh Lin Chong, David W. Orr, Lindsay D. Plank, Tommi Vatanen, Justin M. O’Sullivan, Rinki Murphy
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-017-11311-z

Dynamic oropharyngeal and faecal microbiota during treatment in infants hospitalized for bronchiolitis compared with age-matched healthy subjects
Cited by: 7
Author(s): Qian-Nan Hu, Wenkui Dai, Qian Zhou, Dan Fu, Yuejie Zheng, Wenjian Wang, Yanhong Liu, Qin Yang, De‐Zai Dai, Sixi Liu, Guosheng Liu, Shuai Cheng Li, Feiqiu Wen
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-020-00915-9

Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula
Cited by: 78
Author(s): Shawn P. Brown, Michael A. Grillo, Justin C. Podowski, Katy D. Heath
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-017-10956-0

Under-ice availability of phytoplankton lipids is key to freshwater zooplankton winter survival
Cited by: 58
Author(s): Guillaume Grosbois, Heather L. Mariash, Tobias Schneider, Milla Rautio
Software Mentions: 1
Published: about 7 years ago

10.1128/AEM.02907-20

Transmission Dynamics of Shiga Toxin-Producing Escherichia coli in New Zealand Cattle from Farm to Slaughter
Cited by: 2
Author(s): A. Springer Browne, Anne C. Midwinter, Helen Withers, Adrian L. Cookson, Patrick J. Biggs, Jonathan Marshall, Jackie Benschop, S.C. Hathaway, Lynn Rogers, Shahista Nisa, C. Reed Hranac, Taylor Winkleman, Nigel French
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-12556-4

Potential effects of an invasive seaweed (Caulerpa cylindracea, Sonder) on sedimentary organic matter and microbial metabolic activities
Cited by: 32
Author(s): Lucia Rizzo, Antonio Pusceddu, Loredana Stabili, Pietro Alifano, Simonetta Fraschetti
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11699-8

Microbiome profile of the amniotic fluid as a predictive biomarker of perinatal outcome
Cited by: 77
Author(s): Daichi Urushiyama, Wataru Suda, Eriko Ohnishi, Ryoko Araki, Chihiro Kiyoshima, Masamitsu Kurakazu, Ayako Sanui, Fusanori Yotsumoto, Mariko Murata, Kazuki Nabeshima, Shin’ichiro Yasunaga, Shigeru Saito, Makoto Nomiyama, Masahira Hattori, Shingo Miyamoto, Kenichiro Hata
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-021-01109-7

Bacterial colonization dynamics and antibiotic resistance gene dissemination in the hospital environment after first patient occupancy: a longitudinal metagenetic study
Cited by: 8
Author(s): Tilman E. Klassert, Rasmus Leistner, Cristina Zubiría-Barrera, Magdalena Stock, Marta López, Robert Neubert, Dominik Driesch, Petra Gastmeier, Hortense Slevogt
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-12427-y

Pristine populations of habitat-forming gorgonian species on the Antarctic continental shelf
Cited by: 10
Author(s): Stefano Ambroso, Janire Salazar, Rebeca Zapata-Guardiola, Luisa Federwisch, Claudio Richter, Josep María Gili, Núria Teixidó
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13393-1

Reproduction of an azooxanthellate coral is unaffected by ocean acidification
Cited by: 10
Author(s): Francesca Gizzi, Ludovica de Mas, Valentina Airi, Erik Caroselli, Fiorella Prada, Giuseppe Falini, Zvy Dubinsky, Stefano Goffredo
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-016-0226-6

The effect of cigarette smoking on the oral and nasal microbiota
Cited by: 106
Author(s): Guoqin Yu, Stephen Phillips, Mitchell H. Gail, James J. Goedert, Michael S. Humphrys, Jacques Ravel, Yan-Fang Ren, Neil E. Caporaso
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-14223-0

Antibiotics ameliorate lupus-like symptoms in mice
Cited by: 86
Author(s): Qinghui Mu, Vincent J. Tavella, Jay Kirby, Thomas E. Cecere, Matthias Chung, Jiyoung Lee, Song Li, S. Ansar Ahmed, Kristin Eden, Irving C. Allen, Christopher M. Reilly, Xin Luo
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13962-4

Interactions between seagrasses and seaweeds during surge nitrogen acquisition determine interspecific competition
Cited by: 12
Author(s): Ana Alexandre, Alexandra Baeta, Aschwin H. Engelen, Rui Santos
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-015-0120-7

Variable responses of human and non-human primate gut microbiomes to a Western diet
Cited by: 112
Author(s): Katherine R. Amato, Carl J. Yeoman, Gabriela Cerda, Christopher A. Schmitt, Jennifer Danzy Cramer, Margret E. Berg Miller, Andrés Gómez, Trudy R. Turner, Brenda A. Wilson, Rebecca M. Stumpf, Karen E. Nelson, Bryan A. White, Rob Knight, Steven R. Leigh
Software Mentions: 1
Published: about 9 years ago

10.1128/AEM.00735-19

Optimizing the Production of Nursery-Based Biological Soil Crusts for Restoration of Arid Land Soils
Cited by: 25
Author(s): Julie Bethany, Ana Giraldo-Silva, Corey Nelson, Nichole N. Barger, Ferrán García-Pichel
Software Mentions: 1
Published: over 5 years ago

10.1128/AEM.02615-16

Alternative Protein Sources in the Diet Modulate Microbiota and Functionality in the Distal Intestine of Atlantic Salmon (Salmo salar)
Cited by: 124
Author(s): Karina Gajardo, Alexander Jaramillo-Torres, Trond M. Kortner, Daniel L. Merrifield, John Tinsley, Anne Marie Bakke, Åshild Krogdahl
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-018-0471-y

Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates
Cited by: 29
Author(s): Zhimin Zhang, Dapeng Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-13833-y

Identifying critical recruitment bottlenecks limiting seedling establishment in a degraded seagrass ecosystem
Cited by: 38
Author(s): John Statton, Leonardo Ruiz Montoya, Robert J. Orth, Kingsley W. Dixon, Gary A. Kendrick
Software Mentions: 1
Published: about 7 years ago

10.1128/mSystems.00797-20

Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson’s Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder
Cited by: 56
Author(s): Hiroshi Nishiwaki, Tetsuya Hamaguchi, Mikako Ito, Tomohiro Ishida, Tetsuya Maeda, Kenichi Kashihara, Yoshio Tsuboi, Jun Ueyama, Teppei Shimamura, Hiroshi Mori, Ken Kurokawa, Masahisa Katsuno, Masaaki Hirayama, Kinji Ohno
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-017-15122-0

Time-resolved analysis of a denitrifying bacterial community revealed a core microbiome responsible for the anaerobic degradation of quinoline
Cited by: 16
Author(s): Yun Wang, Hao Tian, Fei Huang, Wenmin Long, Qianpeng Zhang, Jing Wang, Ying Zhu, Xiaogang Wu, Guanzhou Chen, Liping Zhao, Lars R. Bakken, Åsa Frostegård, Xiaojun Zhang
Software Mentions: 1
Published: about 7 years ago

10.1128/mSystems.00905-20

Long-Term Bacterial and Fungal Dynamics following Oral Lyophilized Fecal Microbiota Transplantation in Clostridioides difficile Infection
Cited by: 15
Author(s): Craig Haifer, Sudarshan Paramsothy, Thomas J. Borody, Annabel Clancy, Rupert W. Leong, Nadeem O. Kaakoush
Software Mentions: 1
Published: over 3 years ago

10.1186/s40168-019-0659-9

$W_{d}^{*}$-test: robust distance-based multivariate analysis of variance
Cited by: 34
Author(s): Bashir Hamidi, Kristin Wallace, Chenthamarakshan Vasu, Alexander V. Alekseyenko
Software Mentions: 1
Published: over 5 years ago

10.1186/s40168-016-0185-y

Altered gut microbiota in Rett syndrome
Cited by: 100
Author(s): Francesco Strati, Duccio Cavalieri, Davide Albanese, Claudio De Felice, Claudio Donati, Joussef Hayek, Olivier Jousson, Silvia Leoncini, Massimo Pindo, Daniela Renzi, Lisa Rizzetto, Irene Stefanini, Antonino Calabrò, Carlotta De Filippo
Software Mentions: 1
Published: over 8 years ago

10.1186/s40168-020-00815-y

Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories
Cited by: 148
Author(s): Shan Sun, Roshonda B. Jones, Anthony A. Fodor
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-017-15584-2

The Habitats Humans Provide: Factors affecting the diversity and composition of arthropods in houses
Cited by: 9
Author(s): Misha Leong, Matthew A. Bertone, Amy M. Savage, Keith M. Bayless, Robert R. Dunn, Michelle Trautwein
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-015-0126-1

The first microbial environment of infants born by C-section: the operating room microbes
Cited by: 99
Author(s): Hakdong Shin, Zhiheng Pei, Keith A. Martinez, Juana I Rivera-Viñas, Keimari Méndez, Humberto Cavallín, Maria Gloria Domínguez-Bello
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSystems.01376-20

Human Milk-Fed Piglets Have a Distinct Small Intestine and Circulatory Metabolome Profile Relative to That of Milk Formula-Fed Piglets
Cited by: 4
Author(s): Fernanda Rosa, Katelin S. Matazel, Ahmed A. Elolimy, Sean H. Adams, Anne K. Bowlin, Keith D. Williams, Lars Bode, Laxmi Yeruva
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-16253-0

Copolymers enhance selective bacterial community colonization for potential root zone applications
Cited by: 8
Author(s): Vy Pham, P. Murugaraj, Falko Mathes, Bien Keem Tan, Vi Khanh Truong, Daniel V. Murphy, David E. Mainwaring
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15988-0

Physicochemical characteristics and toxicity of surface-modified zinc oxide nanoparticles to freshwater and marine microalgae
Cited by: 38
Author(s): Mana Man Na Yung, Paul-Antoine Fougères, Yu Hang Leung, Fangzhou Liu, Aleksandra B. Djurišić, John P. Giesy, K. M. Leung
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16289-2

Dysbiosis of the microbiome in gastric carcinogenesis
Cited by: 150
Author(s): Natalia Castaño‐Rodríguez, Khean‐Lee Goh, Kwong Ming Fock, Hazel M. Mitchell, Nadeem O. Kaakoush
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-021-01008-x

Temporal landscape of human gut RNA and DNA virome in SARS-CoV-2 infection and severity
Cited by: 37
Author(s): Tao Zuo, Liu Q, Fen Zhang, Yun Kit Yeoh, Yating Wan, Hui Zhan, Grace Lui, Zigui Chen, Amy Y.L. Li, Chun Pan Cheung, Nan Chen, Wenqi Lv, Ray Kit Ng, Eugene Y. K. Tso, Kitty S. C. Fung, Vivien Chan, Lowell Ling, Gavin M. Joynt, David Hui, Francis K.L. Chan, Paul K.S. Chan, Siew C. Ng
Software Mentions: 1
Published: over 3 years ago

10.1186/s40168-020-00960-4

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment
Cited by: 10
Author(s): Jeremiah J. Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P. Shaffer, Carolina S. Carpenter, Daniel McDonald, Jack A. Gilbert, Sarah Allard, Eric E. Allen, Rob Knight, Daniel A. Sweeney, Austin D. Swafford
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-017-16753-z

CSA13 inhibits colitis-associated intestinal fibrosis via a formyl peptide receptor like-1 mediated HMG-CoA reductase pathway
Cited by: 10
Author(s): Chunlan Xu, Sally Ghali, Jiani Wang, David Q. Shih, Christina Ortiz, Caroline C. Mussatto, Elaine C. Lee, Diana Tran, Jonathan P. Jacobs, Venu Lagishetty, Phillip Fleshner, Lori Robbins, Michelle Vu, Tressia Hing, Dermot McGovern, Hon Wai Koon
Software Mentions: 1
Published: almost 7 years ago

10.1128/AEM.01235-16

The Microbiota of Breast Tissue and Its Association with Breast Cancer
Cited by: 347
Author(s): Camilla Urbaniak, Gregory B. Gloor, Muriel Brackstone, Leslie Scott, Mark Tangney, Gregor Reid
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-16341-1

Heatwaves diminish the survival of a subtidal gastropod through reduction in energy budget and depletion of energy reserves
Cited by: 40
Author(s): Jonathan Y.S. Leung, Sean D. Connell, Bayden D. Russell
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18014-5

A gut pathobiont synergizes with the microbiota to instigate inflammatory disease marked by immunoreactivity against other symbionts but not itself
Cited by: 31
Author(s): João Carlos Gomes-Neto, Hatem Kittana, Sara Mantz, Rafael R. Segura Muñoz, Robert Schmaltz, Laure B. Bindels, Jennifer Clarke, Jesse M. Hostetter, Andrew K. Benson, Jens Walter, Amanda E. Ramer‐Tait
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-017-0346-7

City-scale distribution and dispersal routes of mycobiome in residences
Cited by: 21
Author(s): Xinzhao Tong, Marcus H. Y. Leung, David E. Wilkins, Patrick K. H. Lee
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-18218-9

Intraskeletal histovariability, allometric growth patterns, and their functional implications in bird-like dinosaurs
Cited by: 13
Author(s): Edina Prondvai, Pascal Godefroit, Dominique Adriaens, Daogong Hu
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-019-0747-x

A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals
Cited by: 96
Author(s): Petar Šćepanović, Flavia Hodel, Stanislas Mondot, Valentin Partula, Allyson L. Byrd, Christian Hammer, Cécile Alanio, Jacob Bergstedt, Étienne Patin, Mathilde Touvier, Olivier Lantz, Matthew L. Albert, Darragh Duffy, Lluı́s Quintana-Murci, Jacques Fellay
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-18904-8

An insight into intestinal mucosal microbiota disruption after stroke
Cited by: 93
Author(s): Dragana Stanley, Robert J. Moore, Connie Hoi Yee Wong
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-019-0646-1

Systemic translocation of Staphylococcus drives autoantibody production in HIV disease
Cited by: 21
Author(s): Zhenwu Luo, Min Li, Yongxia Wu, Zhefeng Meng, Lisa Martin, Lumin Zhang, Elizabeth Ogunrinde, Zejun Zhou, Shenghui Qin, Zhuang Wan, Maria Anna Julia Westerink, Stephanie Warth, Hui Liu, Ping Jin, David F. Stroncek, Quan-Zhen Li, Ena Wang, Xueling Wu, Sonya L. Heath, Zihai Li, Alexander V. Alekseyenko, Wei Jiang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-19051-w

Effects of CO2 enrichment on benthic primary production and inorganic nitrogen fluxes in two coastal sediments
Cited by: 9
Author(s): Kay Vopel, Cintya Del-Río, Conrad A. Pilditch
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17851-8

Comparative analyses of fecal microbiota in Chinese isolated Yao population, minority Zhuang and rural Han by 16sRNA sequencing
Cited by: 31
Author(s): Ming Liao, Yuanliang Xie, Yan Mao, Libing Zheng, Aihua Tan, Chunlei Wu, Zhifu Zhang, Yang Chen, Tianyu Li, Yu Ye, Ziting Yao, Yonghua Jiang, Hongzhe Li, Xiaoming Li, Xiaobo Yang, Qiuyan Wang, Zengnan Mo
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19678-3

Effects of temperature and photosynthetically active radiation on virioplankton decay in the western Pacific Ocean
Cited by: 10
Author(s): Wei W, Rui Zhang, Lulu Peng, Yantao Liang, Nianzhi Jiao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19982-y

Alterations of oral microbiota distinguish children with autism spectrum disorders from healthy controls
Cited by: 95
Author(s): Yanan Qiao, Min Wu, Yuanyi Feng, Zhichong Zhou, Lei Chen, Fengshan Chen
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-021-01083-0

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
Cited by: 34
Author(s): Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Dás P, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E. Diner, Gibraan Rahman, Daniel McDonald, George E. Armstrong, Sho M. Kodera, S. De Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C. Salas Garcia, Leslie Chiang, Rodolfo A. Salido, Justin P. Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L. Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J. Torriani, Rob Knight, Jack A. Gilbert, Daniel A. Sweeney, Sarah Allard
Software Mentions: 1
Published: over 3 years ago

10.1186/s40168-015-0082-9

Forensic analysis of the microbiome of phones and shoes
Cited by: 134
Author(s): Simon Lax, Jarrad Hampton-Marcell, Sean M. Gibbons, Geórgia Barguil Colares, Daniel P. Smith, Jonathan A. Eisen, Jack A. Gilbert
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-17436-5

Differentiated surface fungal communities at point of harvest on apple fruits from rural and peri-urban orchards
Cited by: 26
Author(s): Yizhao Shen, Jun Nie, Zhixia Li, Haifei Li, Yonglong Wu, Yu Dong, Jianyi Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-020-00894-x

The human gut archaeome: identification of diverse haloarchaea in Korean subjects
Cited by: 55
Author(s): Joon Yong Kim, Tae Woong Whon, Mi Young Lim, Yeon Bee Kim, Namhee Kim, Min‐Sung Kwon, Juseok Kim, Se Hee Lee, Hak-Jong Choi, In-Hyun Nam, Won‐Hyong Chung, Jung-Ha Kim, Jin-Woo Bae, Seong Woon Roh
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-21029-1

Carbonate chemistry of an in-situ free-ocean CO2 enrichment experiment (antFOCE) in comparison to short term variation in Antarctic coastal waters
Cited by: 13
Author(s): Jonathan S. Stark, Nicholas Roden, Glenn Johnstone, Mark Milnes, James Black, Steven E. Whiteside, William Kirkwood, Kym Newbery, Scott C. Stark, E. D. van Ooijen, Bronte Tilbrook, Edward T. Peltzer, Kate M. Berry, D Roberts
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-018-0600-7

Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant
Cited by: 20
Author(s): Dagmara Sirová, Jiří Bárta, Karel Šimek, Thomas Posch, Jiří Pech, James D. Stone, Jakub Borovec, Lubomír Adamec, Jaroslav Vrba
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-21117-2

The gastrointestinal tract microbiota of northern white-cheeked gibbons (Nomascus leucogenys) varies with age and captive condition
Cited by: 12
Author(s): Ting Jia, Sufen Zhao, Katrina K. Knott, Xiaoguang Li, Yan Liu, Ying Liu, Yuefei Chen, Ming-Hai Yang, Yanping Lu, Jianguo Wu, Chenglin Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-021-01113-x

Host habitat is the major determinant of the gut microbiome of fish
Cited by: 74
Author(s): Pil Soo Kim, Namsoo Shin, Jae Bong Lee, Min Soo Kim, Tae Woong Whon, Dong Wook Hyun, Ji Hyun Yun, Mi Ja Jung, Joon Yong Kim, Jin‐Woo Bae
Software Mentions: 1
Published: over 3 years ago

10.1186/s40168-020-00872-3

Compositional and functional characterisation of biomass-degrading microbial communities in guts of plant fibre- and soil-feeding higher termites
Cited by: 24
Author(s): Martyna Marynowska, Xavier Goux, David Sillam‐Dussès, Corinne Rouland-Lefèvre, Rashi Halder, Paul Wilmes, Piotr Gawron, Yves Roisin, Philippe Delfosse, Magdalena Całusińska
Software Mentions: 1
Published: over 4 years ago

10.1186/2049-2618-2-28

Cell-associated bacteria in the human lung microbiome
Cited by: 66
Author(s): Robert P. Dickson, John R. Erb-Downward, Hallie C. Prescott, Fernando J. Martínez, Jeffrey L. Curtis, Vibha N. Lama, Gary B. Huffnagle
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-21986-7

The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut
Cited by: 127
Author(s): Aaron C. Ericsson, Jonalyn Gagliardi, Delia M. Bouhan, William G. Spollen, Scott A. Givan, Craig L. Franklin
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-017-0254-x

Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios
Cited by: 177
Author(s): Hein Min Tun, Theodore Konya, Tim K. Takaro, Jeffrey R. Brook, Radha Chari, Catherine J. Field, David S. Guttman, Allan B. Becker, Piush J. Mandhane, Stuart E. Turvey, Padmaja Subbarao, Malcolm R. Sears, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-019-0680-z

Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination
Cited by: 13
Author(s): Junhyung Kim, Jae Ho Guk, Seung Hyun Mun, Jae Uk An, Hyokeun Song, Jinshil Kim, Sangryeol Ryu, Byeonghwa Jeon, Seongbeom Cho
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.01329-20

Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition
Cited by: 16
Author(s): Clarisse Marotz, Kellen Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob Knight
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-23032-y

Differences in microbial community structure and nitrogen cycling in natural and drained tropical peatland soils
Cited by: 62
Author(s): Mikk Espenberg, Marika Truu, Ülo Mander, Hiie Nõlvak, Teele Ligi, Kristjan Oopkaup, Martin Maddison, Jaak Truu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-23261-1

Microbiome-metabolome signatures in mice genetically prone to develop dementia, fed a normal or fatty diet
Cited by: 74
Author(s): Elena Sanguinetti, María Carmen Collado, Vannina G. Marrachelli, Daniel Monleón, Marta Selma‐Royo, Mercedes Pardo-Tendero, Silvia Burchielli, Patricia Iozzo
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-23067-1

Below the Mesophotic
Cited by: 69
Author(s): Carole C. Baldwin, Luke Tornabene, D. Ross Robertson
Software Mentions: 1
Published: over 6 years ago

10.1093/aobpla/plv123

Effects of disturbance regime on carbohydrate reserves in meadow plants
Cited by: 12
Author(s): Štěpán Janeček, Alena Bartušková, Michael Bartoš, Jan Altman, Francesco de Bello, Jiří Doležal, Vít Latzel, Vojtěch Lanta, Jan Lepš, Jitka Klimešová
Software Mentions: 1
Published: almost 10 years ago

10.1093/aobpla/plw004

Changes in composition, ecology and structure of high-mountain vegetation: a re-visitation study over 42 years
Cited by: 63
Author(s): Alberto Evangelista, Ludovico Frate, María Laura Carranza, Fabio Attorre, Giovanni Pelino, Angela Stanisci
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-23373-8

Effect of live yeast Saccharomyces cerevisiae (Actisaf Sc 47) supplementation on the performance and hindgut microbiota composition of weanling pigs
Cited by: 38
Author(s): Tadele G. Kiros, Hooman Derakhshani, Eric Pinloche, Romain d'Inca, Jason Marshall, Eric Auclair, Ehsan Khafipour, Andrew Van Kessel
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-23870-w

Dysbiosis of the salivary microbiota in pediatric-onset primary sclerosing cholangitis and its potential as a biomarker
Cited by: 46
Author(s): Kentaro Iwasawa, Wataru Suda, Tomoyuki Tsunoda, Manari Oikawa-Kawamoto, Shuichiro Umetsu, Lena Takayasu, Ayano Inui, Tomoo Fujisawa, Hidetoshi Morita, Tsuyoshi Sogo, Masahira Hattori
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-014-0064-3

Mapping axillary microbiota responsible for body odours using a culture-independent approach
Cited by: 81
Author(s): Myriam Troccaz, Nadia Gaïa, Sabine Beccucci, Jacques Schrenzel, Isabelle Cayeux, Christian Starkenmann, Vladimir Lazarević
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40168-021-01095-w

Vibrio vulnificus induces the death of a major bacterial species in the mouse gut via cyclo-Phe-Pro
Cited by: 3
Author(s): Jeong‐A Kim, Bo-Ram Jang, Yu-Ra Kim, You-Chul Jung, Kun-Soo Kim, Kyung-Jo Lee
Software Mentions: 1
Published: over 3 years ago

10.1093/aobpla/plv018

Changes in plant species composition of coastal dune habitats over a 20-year period
Cited by: 37
Author(s): Silvia Del Vecchio, Irene Prisco, Alicia Teresa Rosario Acosta, Angela Stanisci
Software Mentions: 1
Published: almost 10 years ago

10.1093/aobpla/plaa029

The impact of <i>Spodoptera exigua</i> herbivory on <i>Meloidogyne incognita</i>-induced root responses depends on the nematodes’ life cycle stages
Cited by: 12
Author(s): Crispus M Mbaluto, Esraa M Ahmad, Melody Fu, Ainhoa Martínez‐Medina, Nicole M. van Dam
Software Mentions: 1
Published: over 4 years ago

10.1186/s40168-020-00991-x

Antibiotic-associated dysbiosis affects the ability of the gut microbiota to control intestinal inflammation upon fecal microbiota transplantation in experimental colitis models
Cited by: 46
Author(s): Francesco Strati, Meritxell Pujolassos, Claudia Burrello, Maria Rita Giuffrè, Georgia Lattanzi, Flavio Caprioli, Jacopo Troisi, Federica Facciotti
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-25086-4

Assessing the Zoantharian Diversity of the Tropical Eastern Pacific through an Integrative Approach
Cited by: 15
Author(s): Karla B. Jaramillo, Miriam Reverter, Paúl O. Guillén, Grace P. McCormack, Jenny K. Rodríguez, Frédéric Sinniger, Olivier P. Thomas
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-019-0739-x

Testing the relationship between microbiome composition and flux of carbon and nutrients in Caribbean coral reef sponges
Cited by: 30
Author(s): Shelby E. Gantt, Steven E. McMurray, Amber D. Stubler, Christopher M. Finelli, Joseph R. Pawlik, Patrick M. Erwin
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-25414-8

Recruitment Drives Spatial Variation in Recovery Rates of Resilient Coral Reefs
Cited by: 80
Author(s): Sally J. Holbrook, Thomas C. Adam, Peter J. Edmunds, Russell J. Schmitt, Robert C. Carpenter, Andrew J. Brooks, Hunter S. Lenihan, Cheryl J. Briggs
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-017-0312-4

Statin therapy causes gut dysbiosis in mice through a PXR-dependent mechanism
Cited by: 116
Author(s): José A. Caparrós-Martín, Ricky R. Lareu, Joshua P. Ramsay, Jörg Peplies, F. Jerry Reen, Henrietta A. Headlam, Natalie C. Ward, Kevin D. Croft, Philip Newsholme, Jeffery Hughes, Fergal O’Gara
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-25989-2

Increasing densities of an invasive polychaete enhance bioturbation with variable effects on solute fluxes
Cited by: 29
Author(s): Lea Kauppi, Guillaume Bernard, Ralf Bastrop, Alf Norkko, Joanna Norkko
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25745-6

Trophic overlap between expanding and contracting fish predators in a range margin undergoing change
Cited by: 11
Author(s): Mats Westerbom, Antti Lappalainen, Olli Mustonen, Alf Norkko
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26327-2

Chronic rhinosinusitis with nasal polyps is characterized by dysbacteriosis of the nasal microbiota
Cited by: 61
Author(s): Thanit Chalermwatanachai, Ramiro Vílchez-Vargas, Gabriële Holtappels, Tim Lacoere, Ruy Jáuregui, Frederiek‐Maarten Kerckhof, Dietmar H. Pieper, Tom Van de Wiele, Mario Vaneechoutte, Thibaut Van Zele, Claus Bachert
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-017-0257-7

Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef
Cited by: 33
Author(s): Martina Prazeres, Tracy D. Ainsworth, Thomas E. Roberts, John M. Pandolfi, William Leggat
Software Mentions: 1
Published: over 7 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292