cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1264/jsme2.ME21004

Nitrogen Deficiency-induced Bacterial Community Shifts in Soybean Roots
Cited by: 3
Author(s): Wataru Yazaki, Tomohisa Shimasaki, Yosuke Aoki, Sachiko Masuda, Arisa Shibata, Wataru Suda, Ken Shirasu, Kazufumi Yazaki, Akifumi Sugiyama
Software Mentions: 1
Published: almost 4 years ago

10.3390/plants10030554

Metabolome-Wide, Phylogenetically Controlled Comparison Indicates Higher Phenolic Diversity in Tropical Tree Species
Cited by: 1
Author(s): Guille Peguero, Albert Gargallo‐Garriga, Joan Maspons, Karel Klem, Otmar Urban, Jordi Sardans, Josep Peñuelas
Software Mentions: 1
Published: over 3 years ago

10.3390/plants10050942

Influence of Land Use on the C and N Status of a C4 Invasive Grass in a Semi-Arid Region: Implications for Biomonitoring
Cited by: 1
Author(s): Edison A. Díaz-Álvarez, Erick de la Barrera
Software Mentions: 1
Published: over 3 years ago

10.3390/plants9020156

Community Structure, Diversity and Potential of Endophytic Bacteria in the Primitive New Zealand Medicinal Plant Pseudowintera colorata
Cited by: 16
Author(s): Neeraj Purushotham, E. Eirian Jones, Jana Monk, Hayley J. Ridgway
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.5419

Long-term effects of competition and environmental drivers on the growth of the endangered coral Mussismilia braziliensis (Verril, 1867)
Cited by: 18
Author(s): Felipe Vitório Ribeiro, João A. Sá, Giovana O. Fistarol, Paulo S. Salomon, Renato Crespo Pereira, Maria Luiza A.M. Souza, Leonardo Mitrano Neves, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Leonardo T. Salgado, Alex Cardoso Bastos, Guilherme H. Pereira-Filho, Fernando C. Moraes, Rodrigo L. Moura
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-89963-1

Profiling of tumour-associated microbiota in human hepatocellular carcinoma
Cited by: 41
Author(s): Seiga Komiyama, Takahiro Yamada, Nobuyuki Takemura, Norihiro Kokudo, Koji Hase, Yuki I. Kawamura
Software Mentions: 1
Published: over 3 years ago

10.3390/md18120598

Sterol Composition of Sponges, Cnidarians, Arthropods, Mollusks, and Echinoderms from the Deep Northwest Atlantic: A Comparison with Shallow Coastal Gulf of Mexico
Cited by: 6
Author(s): Laura Carreón-Palau, Nurgül Şen Özdemir, Christopher C. Parrish, Camilla Parzanini
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-90185-8

Unravelling the fatty acid profiles of different polychaete species cultured under integrated multi-trophic aquaculture (IMTA)
Cited by: 8
Author(s): Daniel Jerónimo, Ana I. Lillebø, Elisabete Maciel, M. Rosário M. Domingues, Javier Cremades, Ricardo Calado
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.3587

The time-course of broiler intestinal microbiota development after administration of cecal contents to incubating eggs
Cited by: 60
Author(s): Erin E. Donaldson, Dragana Stanley, Robert J. Hughes, Robert J. Moore
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.479

Local domestication of lactic acid bacteria via cassava beer fermentation
Cited by: 32
Author(s): Alese M. Colehour, James F. Meadow, Melissa A. Liebert, Tara J Cepon-Robins, Theresa E. Gildner, Samuel S. Urlacher, Brendan J. M. Bohannan, J. Josh Snodgrass, Lawrence S. Sugiyama
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.11095

Effects of the cranial parasite Tylodelphys sp. on the behavior and physiology of puye Galaxias maculatus (Jenyns, 1842)
Cited by: 1
Author(s): Ruby López-Rodríguez, Mario George-Nascimento, Konrad Górski
Software Mentions: 1
Published: over 3 years ago

10.3390/md18030177

The Microbial Community of Tetrodotoxin-Bearing and Non-Tetrodotoxin-Bearing Ribbon Worms (Nemertea) from the Sea of Japan
Cited by: 3
Author(s): Daria I. Melnikova, Timur Yu. Magarlamov
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/8829072

Alterations in the Blood Parameters and Fecal Microbiota and Metabolites during Pregnant and Lactating Stages in Bama Mini Pigs as a Model
Cited by: 8
Author(s): Cui Ma, Qiankun Gao, WangHong Zhang, Md. Abul Kalam Azad, Xiangfeng Kong
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-90877-1

Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China
Cited by: 12
Author(s): Vincent L. Pecoraro, Henrik Rasmussen, Sofia I. F. Gomes, Xiao Wang, Vincent Merckx, Lei Cai, Folke Rasmussen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-91066-w

Plant debris are hotbeds for pathogenic bacteria on recreational sandy beaches
Cited by: 4
Author(s): Yoshihiro Suzuki, Hiroki Shimizu, Takahiro Kuroda, Yusuke Takada, Kei Nukazawa
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.4323

Inter-domain microbial diversity within the coral holobiontSiderastrea sidereafrom two depth habitats
Cited by: 19
Author(s): Guido Bonthond, Daniel G. Merselis, Katherine E. Dougan, T. G. Graff, W E C Todd, James W. Fourqurean, Mauricio Rodríguez-Lanetty
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-90976-z

Mortality and microbial diversity after allogeneic hematopoietic stem cell transplantation: secondary analysis of a randomized nutritional intervention trial
Cited by: 6
Author(s): Kristin Aneta Joan Skaarud, Johannes Espolin Roksund Hov, Simen Hyll Hansen, Martin Kummen, Jørgen Valeur, Ingebjørg Seljeflot, Asta Bye, Vemund Paulsen, Knut E.A. Lundin, Marius Trøseid, Geir E. Tjønnfjord, Per Ole Iversen
Software Mentions: 1
Published: over 3 years ago

10.1007/s00248-019-01369-9

Characterization of Bacterial Communities in Breeding Waters of Anopheles darlingi in Manaus in the Amazon Basin Malaria-Endemic Area
Cited by: 16
Author(s): Louise K. J. Nilsson, Marta Rodrigues de Oliveira, Osvaldo Marinotti, Elerson Matos Rocha, Sebastian Håkansson, Wanderli Pedro Tadei, Antônia Queiroz Lima de Souza, Olle Terenius
Software Mentions: 1
Published: over 5 years ago

10.1007/s00248-020-01544-3

Natural Variation in Physicochemical Profiles and Bacterial Communities Associated with Aedes aegypti Breeding Sites and Larvae on Guadeloupe and French Guiana
Cited by: 26
Author(s): Lyza Héry, Amandine Guidez, Audrey‐Anne Durand, Christelle Delannay, Josiann Normandeau-Guimond, Yann Reynaud, Jean Issaly, Daniella Goindin, Grégory Legrave, Joël Gustave, Stéphanie Raffestin, Sébastien Breurec, Philippe Constant, Isabelle Dusfour, Claude Guertin, Anubis Vega-Rúa
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.5485

Spatial and temporal shifts in the diet of the barnacle Amphibalanus eburneus within a subtropical estuary
Cited by: 3
Author(s): Christopher Freeman, Dean S. Janiak, Malcolm Mossop, Richard W. Osman, Valerie J. Paul
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.46205

Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities
Cited by: 32
Author(s): Evan T. Saitta, Renxing Liang, Maggie C. Y. Lau, Caleb M. Brown, Nicholas R. Longrich, Thomas G. Kaye, Ben J. Novak, Steven L. Salzberg, Mark A. Norell, Geoffrey D. Abbott, Marc R. Dickinson, Jakob Vinther, Ian D. Bull, Richard A. Brooker, Peter Martin, Paul Donohoe, Timothy Knowles, Kirsty Penkman, Tullis C. Onstott
Software Mentions: 1
Published: over 5 years ago

10.1007/s00248-019-01358-y

How Hosts Taxonomy, Trophy, and Endosymbionts Shape Microbiome Diversity in Beetles
Cited by: 36
Author(s): Michał Kolasa, Radosław Ścibior, Miłosz A. Mazur, D. Kubisz, Katarzyna Dudek, Łukasz Kajtoch
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.5057

Floating nurseries? Scyphozoan jellyfish, their food and their rich symbiotic fauna in a tropical estuary
Cited by: 3
Author(s): José M. Riascos, Willington Aguirre, Charlotte Hopfe, Diego Morales, Ángela Navarrete, José Tavera
Software Mentions: 1
Published: over 6 years ago

10.1007/s00248-020-01639-x

The Diversity of Nitrogen-Cycling Microbial Genes in a Waste Stabilization Pond Reveals Changes over Space and Time that Is Uncoupled to Changing Nitrogen Chemistry
Cited by: 6
Author(s): Alea Rose, Anna Padovan, Keith A. Christian, Jodie van de Kamp, Mirjam Kaestli, S. Tsoukalis, Levente Bodrossy, Karen S. Gibb
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-91351-8

Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat
Cited by: 27
Author(s): Holly Hone, Ross Mann, Guodong Yang, Jatinder Kaur, Ian Tannenbaum, Tongda Li, Germán Spangenberg, Tim Sawbridge
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.9564

Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia
Cited by: 9
Author(s): Somasundhari Shanmuganandam, Yiheng Hu, Tanja Strive, Robyn N. Hall
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.01377

Unexpectedly High Beta-Diversity of Root-Associated Fungal Communities in the Bolivian Andes
Cited by: 25
Author(s): Christopher J. Barnes, Carla Maldonado, Tobias Guldberg Frøslev, Alexandre Antonelli, Nina Rønsted
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-021-91783-2

Diversity and interactions among triatomine bugs, their blood feeding sources, gut microbiota and Trypanosoma cruzi in the Sierra Nevada de Santa Marta in Colombia
Cited by: 11
Author(s): Claribel Murillo-Solano, Jaime López-Domínguez, Rafael Góngora, Andres Rojas Gulloso, José A. Usme-Ciro, Erick Perdomo-Balaguera, Claudia Herrera, Gabriel Parra-Henao, Eric Dumonteil
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.01319

Soil Photosynthetic Microbial Communities Mediate Aggregate Stability: Influence of Cropping Systems and Herbicide Use in an Agricultural Soil
Cited by: 31
Author(s): Olivier Crouzet, Laurent Consentino, Jean-Pierre Pétraud, Christelle Marrauld, Jean‐Pierre Aguer, Sylvie Bureau, Carine Le Bourvellec, Line Touloumet, Annette Bérard
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.3930

Bacterial and fungal communities respond differently to varying tillage depth in agricultural soils
Cited by: 37
Author(s): Craig Anderson, Michael H. Beare, Hannah L. Buckley, Gavin Lear
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.02693

Regrowth of Microcosm Biofilms on Titanium Surfaces After Various Antimicrobial Treatments
Cited by: 12
Author(s): Qi Han, Yaling Jiang, Bernd W. Brandt, Jiamin Yang, Yu Chen, M.J. Buijs, Wim Crielaard, Lei Cheng, Dongmei Deng
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2017.02494

Fight Fungi with Fungi: Antifungal Properties of the Amphibian Mycobiome
Cited by: 46
Author(s): Patrick J. Kearns, Sarah Fischer, Saioa Fernández-Beaskoetxea, Caitlin R. Gabor, Jaime Bosch, Jennifer L. Bowen, Michael F. Tlusty, Douglas C. Woodhams
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.00053

Long-Term Effects of Multi-Drug-Resistant Tuberculosis Treatment on Gut Microbiota and Its Health Consequences
Cited by: 26
Author(s): Jinyu Wang, Ke Xiong, Shanliang Zhao, Chao Zhang, Jianwen Zhang, Lei Xu, Aiguo Ma
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2019.02047

Interaction Between Conservation Tillage and Nitrogen Fertilization Shapes Prokaryotic and Fungal Diversity at Different Soil Depths: Evidence From a 23-Year Field Experiment in the Mediterranean Area
Cited by: 45
Author(s): Gaia Piazza, Laura Ercoli, Marco Nuti, Elisa Pellegrino
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-91448-0

Major ocean currents may shape the microbiome of the topshell Phorcus sauciatus in the NE Atlantic Ocean
Cited by: 5
Author(s): Ricardo Sousa, Joana Vasconcelos, Iván Vera-Escalona, J. M. P. Q. Delgado, Mafalda Freitas, José A. González, Rodrigo Riera
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2016.02128

Nutritional Models of Experimentally-Induced Subacute Ruminal Acidosis (SARA) Differ in Their Impact on Rumen and Hindgut Bacterial Communities in Dairy Cows
Cited by: 67
Author(s): J.C. Plaizier, Shucong Li, Hein Min Tun, Ehsan Khafipour
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.00682

An Assessment of Climate Induced Increase in Soil Water Availability for Soil Bacterial Communities Exposed to Long-Term Differential Phosphorus Fertilization
Cited by: 2
Author(s): Kate C. Randall, Fiona Brennan, Nicholas Clipson, Rachel Creamer, Bryan S. Griffiths, Sean Storey, Evelyn Doyle
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-91927-4

Abyssal deposit feeders are secondary consumers of detritus and rely on nutrition derived from microbial communities in their guts
Cited by: 7
Author(s): Sonia Romero-Romero, Elizabeth Christina Miller, Jesse A. Black, Brian N. Popp, Jeffrey C. Drazen
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.01948

16S rRNA Gene Sequencing Reveals a Shift in the Microbiota of Diaphorina citri During the Psyllid Life Cycle
Cited by: 36
Author(s): Lixue Meng, Xiaoyang Li, Xiao-Qin Cheng, Hongyu Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.00415

Comparison of Bacterial DNA Profiles in Mid-Trimester Amniotic Fluid Samples From Preterm and Term Deliveries
Cited by: 27
Author(s): Lisa F. Stinson, Maria Hallingström, Malin Barman, Felicia Viklund, Jeffrey A. Keelan, Marian Kacerovský, Matthew S. Payne, Bo Jacobsson
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2015.00418

Examining the impact of acetylene on N-fixation and the active sediment microbial community
Cited by: 49
Author(s): Robinson W. Fulweiler, Elise M. Heiss, Mary Kate Rogener, Silvia E. Newell, Gary R. LeCleir, Sarah M. Kortebein, Steven W. Wilhelm
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.02243

Influence of Dietary Supplementation of Probiotic Pediococcus acidilactici MA18/5M During the Transition From Freshwater to Seawater on Intestinal Health and Microbiota of Atlantic Salmon (Salmo salar L.)
Cited by: 41
Author(s): Alexander Jaramillo-Torres, Mark D. Rawling, Ana Rodiles, Heidi Eileen Mikalsen, Lill-Heidi Johansen, John Tinsley, Torunn Forberg, Elisabeth Aasum, Mathieu Castex, Daniel L. Merrifield
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.599438

Propionate Production by Bioelectrochemically-Assisted Lactate Fermentation and Simultaneous CO2 Recycling
Cited by: 8
Author(s): Marco Isipato, Paolo Dessì, Carlos Sánchez, Simon Mills, Umer Zeeshan Ijaz, Fabiano Asunis, Daniela Spiga, Giorgia De Gioannis, Michele Mascia, Gavin Collins, Aldo Muntoni, Piet N.L. Lens
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2015.01008

Bacterial endophyte communities in the foliage of coast redwood and giant sequoia
Cited by: 47
Author(s): Alyssa A. Carrell, A. Carolin Frank
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2019.02397

Species-Specific Differences in the Microbiomes and Organic Exudates of Crustose Coralline Algae Influence Bacterioplankton Communities
Cited by: 13
Author(s): Zachary A. Quinlan, Raphael Ritson‐Williams, Brenna J Carroll, Craig A. Carlson, Craig E. Nelson
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.592539

Comparative Analysis of the Gut Microbial Communities of the Eurasian Kestrel (Falco tinnunculus) at Different Developmental Stages
Cited by: 12
Author(s): Lei Zhou, Xiaona Huo, Boyu Liu, Hui Wu, Feng Jiang
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.6963

Dietary supplementation with probiotics regulates gut microbiota structure and function in Nile tilapia exposed to aluminum
Cited by: 38
Author(s): Leilei Yu, Nanzhen Qiao, Tianqi Li, Renqiang Yu, Qixiao Zhai, Fengwei Tian, Hao Zhang, Wei Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01697

Schizasterid Heart Urchins Host Microorganisms in a Digestive Symbiosis of Mesozoic Origin
Cited by: 4
Author(s): Alexander Ziegler, Ariel M Gilligan, Jesse G. Dillon, Bruno Pernet
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.2154

Differences in meiofauna communities with sediment depth are greater than habitat effects on the New Zealand continental margin: implications for vulnerability to anthropogenic disturbance
Cited by: 22
Author(s): Norliana Mohd Rosli, Daniel Leduc, Ashley A. Rowden, Malcolm R. Clark, P. Keith Probert, Katrin Berkenbusch, Carlos Neira
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.8957

Size-frequency distribution of coral assemblages in insular shallow reefs of the Mexican Caribbean using underwater photogrammetry
Cited by: 13
Author(s): Roberto C. Hernández-Landa, Erick Barrera-Falcón, Rodolfo Rioja-Nieto
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.02001

Assessment of Bacterial Communities Associated With the Skin of Costa Rican Amphibians at La Selva Biological Station
Cited by: 17
Author(s): Juan G. Abarca, Gabriel Vargas, Ibrahim Zuñiga, Steven M. Whitfield, Douglas C. Woodhams, Jacob L. Kerby, Valerie J. McKenzie, Catalina Murillo‐Cruz, Adrián A. Pinto‐Tomás
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.00833

Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution
Cited by: 46
Author(s): D. L. Leite, Joana Falcão Salles, Emiliano Nicolas Calderón, Clovis B. Castro, Adalto Bianchini, Joseane Aparecida Marques, Jan Dirk van Elsas, Raquel S. Peixoto
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01192

Community Structure of Bacteria Associated With Drifting Sargassum horneri, the Causative Species of Golden Tide in the Yellow Sea
Cited by: 19
Author(s): Xiangyuan Mei, Chunhui Wu, Jianmin Zhao, Yun Tian, Peng Jiang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.712212

Administration of All-Trans Retinoic Acid to Pregnant Sows Alters Gut Bacterial Community of Neonatal Piglets With Different Hoxa1 Genotypes
Cited by: 1
Author(s): Haimei Zhou, Huadong Wu, Yixin Chen, Wanjie Zou, Wei Lü, Yan He
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.6250

A modification of the leaf-bags method to assess spring ecosystem functioning: benthic invertebrates and leaf-litter breakdown in Vera Spring (Central Italy)
Cited by: 7
Author(s): Giovanni Cristiano, Bruno Cicolani, Francesco Paolo Miccoli, Antonio Di Sabatino
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.02689

Vasoactive Intestinal Peptide Deficiency Is Associated With Altered Gut Microbiota Communities in Male and Female C57BL/6 Mice
Cited by: 15
Author(s): Manpreet Bains, Caleb Laney, Annie E. Wolfe, Megan Orr, James A. Waschek, Aaron C. Ericsson, Glenn Dorsam
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-89896-9

Alterations in gut microbiota linked to provenance, sex, and chronic wasting disease in white-tailed deer (Odocoileus virginianus)
Cited by: 12
Author(s): David Minich, Christopher Madden, Morgan V. Evans, Gregory A. Ballash, Daniel J. Barr, Keith P. Poulsen, Patricia M. Dennis, Vanessa L. Hale
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.00729

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea
Cited by: 15
Author(s): Michael F. Graw, Grace D’Angelo, Matthew Borchers, Andrew R. Thurber, Joel E. Johnson, Chuanlun Zhang, Haodong Liu, Frederick S. Colwell
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00458

The Effects of Unfermented and Fermented Cow and Sheep Milk on the Gut Microbiota
Cited by: 14
Author(s): Elizabeth A. Rettedal, Eric Altermann, Nicole C. Roy, Julie E. Dalziel
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00321

Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level
Cited by: 43
Author(s): Judith Lucas, Irina Koester, Antje Wichels, Jutta Niggemann, Thorsten Dittmar, Ulrich Callies, Karen Helen Wiltshire, Gunnar Gerdts
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.01531

High Spatial and Temporal Variations of Microbial Community along the Southern Catfish Gastrointestinal Tract: Insights into Dynamic Food Digestion
Cited by: 24
Author(s): Zhimin Zhang, Dapeng Li, Mohamed M. Refaey, Weigang Xu
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2015.01022

Temporal stability of bacterial symbionts in a temperate ascidian
Cited by: 20
Author(s): Susanna López‐Legentil, Xavier Turon, Roger Espluga, Patrick M. Erwin
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2021.664257

Prenatal Depression, Breastfeeding, and Infant Gut Microbiota
Cited by: 10
Author(s): Nicole Rodriguez, Hein Min Tun, Catherine J. Field, Piushkumar J. Mandhane, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 3 years ago

10.1038/s41390-020-1044-x

Developmental effects on sleep–wake patterns in infants receiving a cow’s milk-based infant formula with an added prebiotic blend: a Randomized Controlled Trial
Cited by: 6
Author(s): John Colombo, Susan E. Carlson, Cecilia Algarı́n, Sussanne Reyes, Maciej Chichlowski, Cheryl L. Harris, Jennifer L. Wampler, Patricio Peirano, Carol Lynn Berseth
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-92796-7

Minor alterations in the intestinal microbiota composition upon Rotavirus infection do not affect susceptibility to DSS colitis
Cited by: 2
Author(s): Kedir Hussen Hamza, Emma Dunér, Isabel Ulmert, Armando Arias, Daniel Sorobetea, Katharina Lahl
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.00268

Microbiome in Cladonia squamosa Is Vertically Stratified According to Microclimatic Conditions
Cited by: 20
Author(s): Hyun-Ju Noh, Yung Mi Lee, Chae Haeng Park, Hong Kum Lee, Jang-Cheon Cho, Soon Gyu Hong
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.02343

Leaves of Indoor Ornamentals Are Biodiversity and Functional Hotspots for Fungi
Cited by: 9
Author(s): Alexander Mahnert, Rocel Amor Ortega, Christian Berg, Martín Grube, Gabriele Berg
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.584850

Highly Contaminated Marine Sediments Can Host Rare Bacterial Taxa Potentially Useful for Bioremediation
Cited by: 30
Author(s): Filippo Dell’Anno, Eugenio Rastelli, Michael Tangherlini, Cinzia Corinaldesi, Clementina Sansone, Christophe Brunet, Sergio Balzano, Adrianna Ianora, Luigi Musco, Maria Rita Montereali, Antonio Dell’Anno
Software Mentions: 1
Published: over 3 years ago

10.3390/pathogens10050525

Mayaro Virus: The Potential Role of Microbiota and Wolbachia
Cited by: 3
Author(s): Thiago Nunes Pereira, Fabiano Duarte Carvalho, Jerônimo Nunes Rugani, Vanessa Lôbo de Carvalho, Jaqueline Jarusevicius, Jayme A. Souza-Neto, Luciano Andrade Moreira
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.02146

A Comparative Analysis of Microbial DNA Preparation Methods for Use With Massive and Branching Coral Growth Forms
Cited by: 14
Author(s): Alejandra Hernández‐Agreda, William Leggat, Tracy D. Ainsworth
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.629802

Metaproteomics Reveals Similar Vertical Distribution of Microbial Transport Proteins in Particulate Organic Matter Throughout the Water Column in the Northwest Pacific Ocean
Cited by: 1
Author(s): Ling-Fen Kong, Kunlun Yan, Zhang-Xian Xie, Yuexin He, Lin Lin, Hongkai Xu, Siqi Liu, Dazhi Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.00312

Dietary Inulin and Trichuris suis Infection Promote Beneficial Bacteria Throughout the Porcine Gut
Cited by: 17
Author(s): Sophie Stolzenbach, Laura J. Myhill, Lee O’Brien Andersen, Łukasz Krych, Helena Mejer, Andrew R. Williams, Peter Nejsum, Christen Rune Stensvold, Dennis Sandris Nielsen, Stig Milan Thamsborg
Software Mentions: 1
Published: over 4 years ago

10.3390/pathogens10030266

Intracellular Microbiome Profiling of the Acanthamoeba Clinical Isolates from Lens Associated Keratitis
Cited by: 9
Author(s): Yu-Jen Wang, Sung Chou Li, Wei Chen Lin, Fu Chin Huang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.00693

Recto-Anal Junction (RAJ) and Fecal Microbiomes of Cattle Experimentally Challenged With Escherichia coli O157:H7
Cited by: 6
Author(s): Raies A. Mir, Robert G. Schaut, Torey Looft, Heather K. Allen, Vijay Kumar Sharma, Indira T. Kudva
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.01083

The Variation of Nasal Microbiota Caused by Low Levels of Gaseous Ammonia Exposure in Growing Pigs
Cited by: 17
Author(s): Tongxin Wang, Qiongyu He, Weilei Yao, Yafei Shao, Li Ji, Feiruo Huang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01886

Legitimate and Reliable Determination of the Age-Related Intestinal Microbiome in Young Piglets; Rectal Swabs and Fecal Samples Provide Comparable Insights
Cited by: 15
Author(s): R. Choudhury, Anouschka Middelkoop, J.E. Bolhuis, Michiel Kleerebezem
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.01848

Isolation, Diversity, and Growth-Promoting Activities of Endophytic Bacteria From Tea Cultivars of Zijuan and Yunkang-10
Cited by: 56
Author(s): Xiaomei Yan, Zhi Wang, Mei Yu, Liqun Wang, Xu Wang, Qingshan Xu, Su Peng, Yu Zhou, Chaoling Wei
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.730477

Assessing the Influence of Environmental Sources on the Gut Mycobiome of Tibetan Macaques
Cited by: 3
Author(s): Binghua Sun, Yingna Xia, Samuel Davison, Andrés Gómez, Paul A. Garber, Katherine R. Amato, Xiaojuan Xu, Dong Xia, Xi Wang, Jin Hua Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.02851

Effect of Different Substrates on Soil Microbial Community Structure and the Mechanisms of Reductive Soil Disinfestation
Cited by: 22
Author(s): Xian-Zheng Tan, Hongkai Liao, Liangzuo Shu, Huaiying Yao
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2020.591358

Soil Bacterial and Archaeal Communities and Their Potential to Perform N-Cycling Processes in Soils of Boreal Forests Growing on Well-Drained Peat
Cited by: 13
Author(s): Marika Truu, Hiie Nõlvak, Ivika Ostonen, Kristjan Oopkaup, Martin Maddison, Teele Ligi, Mikk Espenberg, Veiko Uri, Ülo Mander, Jaak Truu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.01381

Microbiota Analysis for the Optimization of Campylobacter Isolation From Chicken Carcasses Using Selective Media
Cited by: 12
Author(s): Jinshil Kim, Hakdong Shin, Hyeeun Park, Hayan Jung, Junhyung Kim, Seongbeom Cho, Sangryeol Ryu, Byeonghwa Jeon
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2014.00616

Microbial interactions and the ecology and evolution of Hawaiian Drosophilidae
Cited by: 3
Author(s): Timothy K. O’Connor, Parris T. Humphrey, Richard T. Lapoint, Noah K. Whiteman, Patrick M. O’Grady
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2020.00120

Distinct Types of Gut Microbiota Dysbiosis in Hospitalized Gastroenterological Patients Are Disease Non-related and Characterized With the Predominance of Either Enterobacteriaceae or Enterococcus
Cited by: 19
Author(s): Aleksander Mahnič, Martin Breskvar, Sašo Džeroski, Pavel Skok, Špela Pintar, Maja Rupnik
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2017.01702

Composted Cattle Manure Increases Microbial Activity and Soil Fertility More Than Composted Swine Manure in a Submerged Rice Paddy
Cited by: 126
Author(s): Suvendu Das, Seung Tak Jeong, Suvendu Das
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2021.656656

Build Your Own Mushroom Soil: Microbiota Succession and Nutritional Accumulation in Semi-Synthetic Substratum Drive the Fructification of a Soil-Saprotrophic Morel
Cited by: 21
Author(s): Hao Tan, Yang Yu, Jie Tang, Tianhai Liu, Renyun Miao, Huang ZhongQian, Francis Martin, Weihong Peng
Software Mentions: 1
Published: over 3 years ago

10.3390/pathogens10060697

Sow Contact Is a Major Driver in the Development of the Nasal Microbiota of Piglets
Cited by: 10
Author(s): Pau Obregon-Gutierrez, Virginia Aragón, Florencia Correa‐Fiz
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.705020

Gut Microbiota Diversity and C-Reactive Protein Are Predictors of Disease Severity in COVID-19 Patients
Cited by: 48
Author(s): André Moreira-Rosário, Cláudia Marques, Hélder Pinheiro, João R. Araújo, Pedro Ribeiro, Rita Rocha, Inês Barreiros Mota, Diogo Pestana, Rogers Ribeiro, Ana Margarida Pereira, Maria José Sousa, José B. Pereira-Leal, José de Sousa, Juliana Morais, Diana Teixeira, Júlio César Rocha, Marta P. Silvestre, Nuno Príncipe, Nuno Gatta, J. A. Amado, Lurdes Santos, Fernando Maltêz, Ana Boquinhas, Germano de Sousa, Nuno Germano, Gonçalo Sarmento, Cristina Granja, Pedro Póvoa, Ana Faria, Conceição Calhau
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2016.01749

Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted Patients
Cited by: 8
Author(s): Marie Beaume, Vladimir Lazarević, Thilo Köhler, Nadia Gaïa, Oriol Manuel, John-David Aubert, Loic Bærlocher, Laurent Farinelli, Paola Gasche, Jacques Schrenzel, Christian van Delden, Rita Achermann, Patrizia Amico, Philippe Baumann, Guido Beldi, Christian Benden, Christoph Berger, Isabelle Binet, Pierre‐Yves Bochud, Elsa Boely, Heiner C. Bucher, Léo H. Bühler, Thierry Carell, Emmanuelle Catana, Yves Chalandon, Sabina De Geest, Olivier de Rougemont, Michael Dickenmann, Michel Duchosal, Thomas Fehr, Sylvie Ferrari‐Lacraz, Christian Garzoni, Paola Gasche Soccal, Emiliano Giostra, Déla Golshayan, Daniel W. Good, Karine Hadaya, Jörg Halter, Dominik Heim, Christoph Hess, Sven Hillinger, Hans H. Hirsch, Cédric Hirzel, Günther F.L. Hofbauer, Uyen Huynh‐Do, Franz F. Immer, Richard Klaghofer, Michael Koller, Bettina Laesser, Roger Lehmann, Christian Lovis, Hanspeter Marti, Pierre Yves Martin, Luca Martinolli, Pascal Meylan, Paul Mohaçsi, Isabelle Morard, Philippe Morel, Ulrike Mueller, Nicolas J. Mueller, Helen Mueller-McKenna, A Müller, Thomas Müller, Beat Müllhaupt, David Nadal, Manuel Pascual, Jakob Passweg, Chantal Piot Ziegler, Juliane Rick, Eddy Roosnek, Anne Rosselet, Silvia Rothlin, Frank Ruschitzka, Urs Schanz, Stefan Schaub, Christian Seiler, Susanne Stampf, Jürg Steiger, Guido Stirnimann, Guido Toso, Dimitri Tsinalis, Jean-Pierre Venetz, Jean Villard, Madeleine Wick, Markus J. Wilhelm, Patrick Yerly
Software Mentions: 1
Published: about 8 years ago

10.1038/s41396-019-0506-9

Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean
Cited by: 64
Author(s): Caterina R. Giner, Massimo C. Pernice, Vanessa Balagué, Carlos M. Duarte, Josep M. Gasol, Ramiro Logares, Ramón Massana
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2016.00956

Can the Bacterial Community of a High Arctic Glacier Surface Escape Viral Control?
Cited by: 23
Author(s): Sara Rassner, Alexandre M. Anesio, Susan Elizabeth Girdwood, Katherina Hell, Jarishma K. Gokul, David E. Whitworth, Arwyn Edwards
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2015.00193

Stable microbial community composition on the Greenland Ice Sheet
Cited by: 53
Author(s): Michaela Musilova, Martyn Tranter, Sarah A. Bennett, Jemma L. Wadham, Alexandre M. Anesio
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.03334

Bacterial Communities in the Alpaca Gastrointestinal Tract Vary With Diet and Body Site
Cited by: 3
Author(s): Courtney Carroll, Kyle D. Olsen, Nathan J. Ricks, Kimberly A. Dill‐McFarland, Garret Suen, Todd Robinson, John M. Chaston
Software Mentions: 1
Published: almost 6 years ago

10.3390/pathogens9060428

Host Species Determines the Composition of the Prokaryotic Microbiota in Phlebotomus Sandflies
Cited by: 14
Author(s): Christos Papadopoulos, Panagiotis A. Karas, Sotirios Vasileiadis, Panagiota Ligda, Anastasios Saratsis, Smaragda Sotiraki, Dimitrios G. Karpouzas
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.542064

Patterns of Sediment Fungal Community Dependent on Farming Practices in Aquaculture Ponds
Cited by: 8
Author(s): Zhimin Zhang, Qinghui Deng, Xiuyun Cao, Yiyong Zhou, Changchun Song
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.01459

The Capacity of the Fecal Microbiota From Malawian Infants to Ferment Resistant Starch
Cited by: 9
Author(s): Yanan Wang, Elissa Mortimer, Kondwani Katundu, Noel Kalanga, Lex E. X. Leong, Geetha Gopalsamy, Claus T. Christophersen, Alyson Richard, Aravind Shivasami, Guy C. J. Abell, Graeme P. Young, Geraint B. Rogers
Software Mentions: 1
Published: over 5 years ago

10.1016/j.csbj.2020.01.007

Co-occurrence patterns of bacteria within microbiome of Moscow subway
Cited by: 21
Author(s): Natalia Klimenko, Alexander V. Tyakht, Stepan V. Toshchakov, Margarita Shevchenko, Aleksei A. Korzhenkov, Ebrahim Afshinnekoo, Christopher E. Mason, Dmitry Alexeev
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2019.02858

Intestinal Pioneer Colonizers as Drivers of Ileal Microbial Composition and Diversity of Broiler Chickens
Cited by: 27
Author(s): Denise Russi Rodrigues, Emily Winson, Kim Wilson, W.N. Briggs, Audrey F. Duff, K.M. Chasser, Lisa R. Bielke
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2021.726483

Metataxonomic Analysis of Grape Microbiota During Wine Fermentation Reveals the Distinction of Cyprus Regional terroirs
Cited by: 11
Author(s): Eleni Kamilari, Minas A. Mina, Christos Karallis, Dimitrios Tsaltas
Software Mentions: 1
Published: about 3 years ago

10.1016/j.csbj.2020.08.028

Multi-population cohort meta-analysis of human intestinal microbiota in early life reveals the existence of infant community state types (ICSTs)
Cited by: 15
Author(s): Leonardo Mancabelli, Chiara Tarracchini, Christian Milani, Gabriele Andrea Lugli, Federico Fontana, Francesca Turroni, Douwe van Sinderen, Marco Ventura
Software Mentions: 1
Published: almost 5 years ago

10.1038/s42003-021-02163-5

Microbial dysbiosis reflects disease resistance in diverse coral species
Cited by: 23
Author(s): Nicholas J. MacKnight, Kathryn Cobleigh, Danielle Lasseigne, Andia Chaves‐Fonnegra, Alexandra Gutting, Bradford A. Dimos, Jendahye Antoine, Lauren E. Fuess, Contessa A. Ricci, Caleb C. Butler, Erinn M. Muller, Laura D. Mydlarz, Marilyn E. Brandt
Software Mentions: 1
Published: over 3 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292