cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/nu11071541

Diversity of Gut Microbiota Affecting Serum Level of Undercarboxylated Osteocalcin in Patients with Crohn’s Disease
Cited by: 16
Author(s): Kohei Wagatsuma, Satoshi Yamada, Ao Mei, Minoru Matsuura, Hideaki Tsuji, Tomoya Iida, Kentaro Miyamoto, Koichiro Oka, Motomichi Takahashi, Kiyoshi Tanaka, Hiroshi Nakase
Software Mentions: 1
Published: about 7 years ago

10.1038/srep30616

Comparison and Interpretation of Taxonomical Structure of Bacterial Communities in Two Types of Lakes on Yun-Gui plateau of China
Cited by: 22
Author(s): Maozhen Han, Yanhai Gong, Chunyu Zhou, Junqian Zhang, Zhi Wang, Kang Ning
Software Mentions: 1
Published: about 10 years ago

10.1038/srep30893

A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research
Cited by: 208
Author(s): Karina Gajardo, Ana Rodiles, Trond M. Kortner, Åshild Krogdahl, Anne Marie Bakke, Daniel L. Merrifield, Henning Sørum
Software Mentions: 1
Published: about 10 years ago

10.3390/antibiotics10040352

Characterization of Environmental and Cultivable Antibiotic-Resistant Microbial Communities Associated with Wastewater Treatment
Cited by: 4
Author(s): Alicia Sorgen, James E. Johnson, Kevin Lambirth, Sandra M. Clinton, Molly C. Redmond, Anthony A. Fodor, Cynthia Gibas
Software Mentions: 1
Published: over 5 years ago

10.1038/srep31413

Enemies with benefits: parasitic endoliths protect mussels against heat stress
Cited by: 31
Author(s): Gerardo I. Zardi, Katy R. Nicastro, Christopher D. McQuaid, Terence P. T. Ng, Justin A. Lathlean, Laurent Seuront
Software Mentions: 1
Published: about 10 years ago

10.1152/ajpgi.00126.2020

Obeticholic acid improves fetal bile acid profile in a mouse model of gestational hypercholanemia
Cited by: 7
Author(s): Vanessa Pataia, Saraid McIlvride, Georgia Papacleovoulou, Caroline Ovadia, Julie A. K. McDonald, Annika Wahlström, Eugène Jansen, Luciano Adorini, D. A. Shapiro, Julian R. Marchesi, Hanns‐Ulrich Marschall, Catherine Williamson
Software Mentions: 1
Published: about 6 years ago

10.1093/jn/nxaa219

Avocado Consumption Alters Gastrointestinal Bacteria Abundance and Microbial Metabolite Concentrations among Adults with Overweight or Obesity: A Randomized Controlled Trial
Cited by: 23
Author(s): Sharon V. Thompson, Melisa A Bailey, Andrew M. Taylor, Jennifer Kaczmarek, Annemarie R Mysonhimer, Caitlyn G. Edwards, Ginger E. Reeser, Nicholas A. Burd, Naiman A. Khan, Hannah D. Holscher
Software Mentions: 1
Published: over 5 years ago

10.1038/srep32032

pH drop impacts differentially skin and gut microbiota of the Amazonian fish tambaqui (Colossoma macropomum)
Cited by: 100
Author(s): François‐Étienne Sylvain, Bachar Cheaib, Martin S. Llewellyn, Tiago Gabriel Correia, Daniel Barros Fagundes, Adalberto Luı́s Val, Nicolas Derôme
Software Mentions: 1
Published: almost 10 years ago

10.1152/ajpendo.00407.2018

Obeticholic acid ameliorates dyslipidemia but not glucose tolerance in mouse model of gestational diabetes
Cited by: 11
Author(s): Saraid McIlvride, Vanya Nikolova, Hei Man Fan, Julie A. K. McDonald, Annika Wahlström, Elena Bellafante, Eugène Jansen, Luciano Adorini, D. A. Shapiro, Peter M. Jones, Julian R. Marchesi, Hanns‐Ulrich Marschall, Catherine Williamson
Software Mentions: 1
Published: about 7 years ago

10.1038/srep31775

Joint effects of pregnancy, sociocultural, and environmental factors on early life gut microbiome structure and diversity
Cited by: 112
Author(s): Albert M. Levin, Alexandra R. Sitarik, Suzanne Havstad, Kei E. Fujimura, Ganesa Wegienka, Andrea E. Cassidy‐Bushrow, Hae Jin Kim, Edward M. Zoratti, Nicholas W. Lukacs, Homer A. Boushey, Dennis R. Ownby, Susan V. Lynch, Christine Cole Johnson
Software Mentions: 1
Published: almost 10 years ago

10.1093/jn/nxab113

Luminal Bioavailability of Orally Administered ω-3 PUFAs in the Distal Small Intestine, and Associated Changes to the Ileal Microbiome, in Humans with a Temporary Ileostomy
Cited by: 4
Author(s): Gael R Nana, Suparna Mitra, H. Watson, Caroline Young, Henry M. Wood, Sarah L. Perry, Amanda D. Race, Philip Quirke, Giles J. Toogood, Paul M. Loadman, Mark A. Hull
Software Mentions: 1
Published: about 5 years ago

10.1038/srep32263

Population and life-stage specific sensitivities to temperature and salinity stress in barnacles
Cited by: 16
Author(s): Ali Nasrolahi, Jonathan N. Havenhand, Anna-Lisa Wrange, Christian Pansch
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33350

Effects of captivity and artificial breeding on microbiota in feces of the red-crowned crane (Grus japonensis)
Cited by: 47
Author(s): Yuwei Xie, Pu Xia, Hui Wang, Yu H, John P. Giesy, Yimin Zhang, Miguel A. Mora, Xiaowei Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33726

Lactobacillus plantarum attenuates anxiety-related behavior and protects against stress-induced dysbiosis in adult zebrafish
Cited by: 107
Author(s): Daniel R. Davis, Holly M. Doerr, Agata K. Grzelak, Susheel Bhanu Busi, Eldin Jašarević, Aaron C. Ericsson, Elizabeth C. Bryda
Software Mentions: 1
Published: almost 10 years ago

10.3390/microorganisms8071040

Metabarcoding Analyses of Gut Microbiota of Nile Tilapia (Oreochromis niloticus) from Lake Awassa and Lake Chamo, Ethiopia
Cited by: 32
Author(s): Negash Kabtimer Bereded, Manuel Curto, Konrad J. Domig, Getachew Beneberu, Solomon Workneh Fanta, Herwig Waidbacher, Harald Meimberg
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms7110511

The Effect of Maternal Postpartum Practices on Infant Gut Microbiota: A Chinese Cohort Study
Cited by: 12
Author(s): Ying Wang, Liu Yan-qun, Jinbing Bai, Xiaoli Chen
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep33965

Probiotic legacy effects on gut microbial assembly in tilapia larvae
Cited by: 46
Author(s): Christos Giatsis, Detmer Sipkema, Javier Ramiro-García, Gianina M. Bacanu, Jason Abernathy, J.A.J. Verreth, Hauke Smidt, Marc Verdegem
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep34434

Temporal dynamics of hot desert microbial communities reveal structural and functional responses to water input
Cited by: 61
Author(s): Alacia Armstrong, Ángel Valverde, Jean‐Baptiste Ramond, Thulani P. Makhalanyane, Janet Jansson, D. W. Hopkins, Thomas J. Aspray, Mary Seely, Marla Trindade, Don A. Cowan
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep34456

Allochthonous carbon is a major regulator to bacterial growth and community composition in subarctic freshwaters
Cited by: 42
Author(s): Toni Roiha, Sari Peura, Mathieu Cusson, Milla Rautio
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep34544

Biodiversity loss and turnover in alternative states in the Mediterranean Sea: a case study on meiofauna
Cited by: 34
Author(s): Silvia Bianchelli, Emanuela Buschi, Roberto Danovaro, Antonio Pusceddu
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35405

Chronic Sleep Disruption Alters Gut Microbiota, Induces Systemic and Adipose Tissue Inflammation and Insulin Resistance in Mice
Cited by: 280
Author(s): Valeriy Poroyko, Alba Carreras, Abdelnaby Khalyfa, Ahamed Khalyfa, Vanessa Leone, Eduard Peris, Isaac Almendros, Alex Gileles‐Hillel, Zhuanhong Qiao, Nathaniel Hubert, Ramón Farré, Eugene B. Chang, David Gozal
Software Mentions: 1
Published: almost 10 years ago

10.3390/microorganisms8101581

Investigation of Age-Related Changes in the Skin Microbiota of Korean Women
Cited by: 13
Author(s): Minseok Kim, Tansol Park, Jong-Il Yun, Hye Won Lim, Ning Han, Seung Tae Lee
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/1825209

Effect of Taro Starch, Beet Juice, Probiotic, and/or Psicose on Gut Microbiota in a Type 2 Diabetic Rat Model: A Pilot Study
Cited by: 2
Author(s): Ingrid S. Surono, Ata Aditya Wardana, Priyo Waspodo, Budi Saksono, Koen Venema
Software Mentions: 1
Published: about 5 years ago

10.1038/srep36137

Sex differences in colonization of gut microbiota from a man with short-term vegetarian and inulin-supplemented diet in germ-free mice
Cited by: 37
Author(s): Jingjing Wang, Xiaoyan Pang, Liping Zhao, Ling Tian, Xingpeng Wang
Software Mentions: 1
Published: almost 10 years ago

10.1017/jns.2020.15

A period of 10 weeks of increased protein consumption does not alter faecal microbiota or volatile metabolites in healthy older men: a randomised controlled trial
Cited by: 9
Author(s): Sarah M. Mitchell, Elizabeth McKenzie, Cameron J. Mitchell, Amber M. Milan, Nina Zeng, Randall F. D’Souza, Farha Ramzan, Pankaja Sharma, Elizabeth A. Rettedal, Scott O. Knowles, Nicole C. Roy, Anders Sjödin, Karl‐Heinz Wagner, Justin M. O’Sullivan, David Cameron‐Smith
Software Mentions: 1
Published: over 6 years ago

10.3390/antibiotics10030269

Allium Extract Implements Weaned Piglet’s Productive Parameters by Modulating Distal Gut Microbiota
Cited by: 15
Author(s): Miguel Rabelo-Ruiz, Claudia Teso-Pérez, Juan Manuel Peralta‐Sánchez, Juan José Ariza, Antonio Manuel Martín-Platero, Óscar Casabuena-Rincón, Patricia Vázquez-Chas, Enrique Guillamón, M. A. Aguinaga, Mercedes Maqueda, Eva Valdivia, Alberto Baños, Manuel Martínez‐Bueno
Software Mentions: 1
Published: over 5 years ago

10.1038/srep37359

Declines in benthic macroinvertebrate community metrics and microphytobenthic biomass in an estuarine lake following enrichment by hippo dung
Cited by: 26
Author(s): Jessica Dawson, Deena Pillay, Peter Jean Roberts, Renzo Perissinotto
Software Mentions: 1
Published: almost 10 years ago

10.1080/20002297.2020.1832837

Oral dysbiosis induced by Porphyromonas gingivalis is strain-dependent in mice
Cited by: 14
Author(s): Émile Boyer, Patricia Leroyer, Ludivine Malherbe, Shao Bing Fong, Olivier Loréal, Martine Bonnaure‐Mallet, Vincent Meuric
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9051032

Effects of a Bioprocessed Soybean Meal Ingredient on the Intestinal Microbiota of Hybrid Striped Bass, Morone chrysops x M. saxatilis
Cited by: 6
Author(s): Emily Fowler, Prakash Poudel, Brandon M. White, Benoit St‐Pierre, Michael L. Brown
Software Mentions: 1
Published: over 5 years ago

10.1038/srep38599

Gut microbiota from metabolic disease-resistant, macrophage-specific RIP140 knockdown mice improves metabolic phenotype and gastrointestinal integrity
Cited by: 4
Author(s): Yi Lin, Emmanuel Montassier, Dan Knights, Li‐Na Wei
Software Mentions: 1
Published: over 9 years ago

10.1038/srep39038

Effects of light attenuation on the sponge holobiont- implications for dredging management
Cited by: 38
Author(s): Mari Carmen Pineda, Brian Strehlow, Alan Duckworth, Jason Doyle, Ross Jones, Nicole S. Webster
Software Mentions: 1
Published: over 9 years ago

10.1038/srep08940

Extensive phenotypic plasticity of a Red Sea coral over a strong latitudinal temperature gradient suggests limited acclimatization potential to warming
Cited by: 65
Author(s): Yvonne Sawall, Abdulmohsin Al-Sofyani, Sönke Hohn, Eulalia Banguera-Hinestroza, Christian R. Voolstra, Martin Wahl
Software Mentions: 1
Published: over 11 years ago

10.1038/srep11932

Trace element fingerprinting of cockle (Cerastoderma edule) shells can reveal harvesting location in adjacent areas
Cited by: 41
Author(s): Fernando Ricardo, Luciana Génio, Miguel C. Leal, Rui Albuquerque, Henrique Queiroga, Rui Rosa, Ricardo Calado
Software Mentions: 1
Published: about 11 years ago

10.1038/srep39114

Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes
Cited by: 54
Author(s): Paul G. Dennis, Bernardino Virdis, Inka Vanwonterghem, Alif Hassan, Philip Hugenholtz, Gene W. Tyson, Korneel Rabaey
Software Mentions: 1
Published: over 9 years ago

10.3390/nu13051569

The TOTUM-63 Supplement and High-Intensity Interval Training Combination Limits Weight Gain, Improves Glycemic Control, and Influences the Composition of Gut Mucosa-Associated Bacteria in Rats on a High Fat Diet
Cited by: 12
Author(s): Marine Dupuit, Vivien Chavanelle, Benoît Chassaing, Fanny Perrière, Monique Etienne, Claire Plissonneau, Audrey Boscaro, Nicolas Barnich, Vincent Pialoux, Thierry Maugard, Florian Le Joubioux, Sébastien Peltier, Pascal Sirvent, Yolanda F. Otero, Nathalie Boisseau
Software Mentions: 1
Published: over 5 years ago

10.3390/nu13061982

Evaluation of the Cholesterol-Lowering Mechanism of Enterococcus faecium Strain 132 and Lactobacillus paracasei Strain 201 in Hypercholesterolemia Rats
Cited by: 15
Author(s): Lingshuang Yang, Xinqiang Xie, Ying Liu, Lei Wu, Congcong Fan, Tingting Liang, Yu X, Shuanghong Yang, Haixin Li, Jumei Zhang, Yu Ding, L. Xue, Moutong Chen, Juan Wang, Qingping Wu
Software Mentions: 1
Published: about 5 years ago

10.1111/apt.15375

Consistent alterations in faecal microbiomes of patients with primary sclerosing cholangitis independent of associated colitis
Cited by: 63
Author(s): Malte Rühlemann, Timur Liwinski, Femke-Anouska Heinsen, Corinna Bang, Roman Zenouzi, Martin Kummen, Louise B. Thingholm, Maria Tempel, Wolfgang Lieb, Tom H. Karlsen, Ansgar W. Lohse, Johannes Espolin Roksund Hov, Gerald Denk, Frank Lammert, Marcin Krawczyk, Christoph Schramm, André Franke
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms8111721

Characterization of the Kenyan Honey Bee (Apis mellifera) Gut Microbiota: A First Look at Tropical and Sub-Saharan African Bee Associated Microbiomes
Cited by: 14
Author(s): Yosef Hamba Tola, Jacqueline Wahura Waweru, Gregory D. D. Hurst, Bernard Slippers, Juan C. Paredes
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep41766

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites
Cited by: 76
Author(s): Hongwei Liu, Lília C. Carvalhais, Peer M. Schenk, Paul G. Dennis
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms7100463

Probiotics Prevents Sensitization to Oral Antigen and Subsequent Increases in Intestinal Tight Junction Permeability in Juvenile–Young Adult Rats
Cited by: 26
Author(s): Janyerkye Tulyeu, Hideki Kumagai, Eriko F. Jimbo, Shinya Watanabe, Koji Yokoyama, Longzhu Cui, Hitoshi Osaka, Makiko Mieno, Takanori Yamagata
Software Mentions: 1
Published: almost 7 years ago

10.3390/antibiotics10060643

Core Altered Microorganisms in Colitis Mouse Model: A Comprehensive Time-Point and Fecal Microbiota Transplantation Analysis
Cited by: 41
Author(s): Lijun Shang, Hongbin Liu, Haitao Yu, Meixia Chen, Tianren Yang, Xiangfang Zeng, Shiyan Qiao
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms9030669

Actinotignum schaalii: Relation to Concomitants and Connection to Patients’ Conditions in Polymicrobial Biofilms of Urinary Tract Catheters and Urines
Cited by: 3
Author(s): Iva Kotásková, Vít Syrovátka, Hana Obručová, Petra Vídeňská, Barbora Zwinsová, Veronika Holá, Eva Blaštíková, Filip Růžička, Tomáš Freiberger
Software Mentions: 1
Published: over 5 years ago

10.1038/srep43103

Suppression of Fusarium wilt of cucumber by ammonia gas fumigation via reduction of Fusarium population in the field
Cited by: 32
Author(s): Jun Zhao, Ming Zhong, Xu Zhang, Cong Xue, Chenzhi Zhang, Tengfei Ma, Shusheng Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43247

Effects of reciprocal transplantation on the microbiome and putative nitrogen cycling functions of the intertidal sponge, Hymeniacidon heliophila
Cited by: 35
Author(s): Brooke L. Weigel, Patrick M. Erwin
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43600

Water flow buffers shifts in bacterial community structure in heat-stressed Acropora muricata
Cited by: 21
Author(s): Sonny T. M. Lee, Simon K. Davy, Sen‐Lin Tang, Paul S. Kench
Software Mentions: 1
Published: over 9 years ago

10.3390/nu12082220

Effect of Choline Forms and Gut Microbiota Composition on Trimethylamine-N-Oxide Response in Healthy Men
Cited by: 30
Author(s): Clara E. Cho, Niklas Aardema, Madison L Bunnell, Deanna Larson, Sheryl S. Aguilar, Janet R Bergeson, Olga Malysheva, Marie A. Caudill, Michael Lefevre
Software Mentions: 1
Published: about 6 years ago

10.1080/20002297.2019.1586421

Caries-associated oral microbiome in head and neck cancer radiation patients: a longitudinal study
Cited by: 17
Author(s): Jean-Luc Mougeot, Craig B. Stevens, Kathryn G. Almon, Bruce J. Paster, Rajesh V. Lalla, Michael T. Brennan, Farah Bahrani Mougeot
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms9030501

Bacterial Communities and Enzymatic Activities in Sediments of Long-Term Fish and Crab Aquaculture Ponds
Cited by: 13
Author(s): Zhimin Zhang, Qinghui Deng, Lingling Wan, Xiuyun Cao, Yiyong Zhou, Changchun Song
Software Mentions: 1
Published: over 5 years ago

10.1038/srep44049

Changes in land use driven by urbanization impact nitrogen cycling and the microbial community composition in soils
Cited by: 64
Author(s): Haitao Wang, C. W. Marshall, Minying Cheng, Huijuan Xu, Hu Li, Xiao‐Ru Yang, Tao Zheng
Software Mentions: 1
Published: over 9 years ago

10.1080/20002297.2017.1281562

Porphyromonas gingivalis is the most abundant species detected in coronary and femoral arteries
Cited by: 80
Author(s): J-L C Mougeot, C B Stevens, Bruce J. Paster, Michael T. Brennan, Peter B. Lockhart, F K B Mougeot
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44935

Alterations in Gastric Microbiota After H. Pylori Eradication and in Different Histological Stages of Gastric Carcinogenesis
Cited by: 122
Author(s): Tung Hiu Li, Youwen Qin, Pak C. Sham, Kam Shing Lau, Kent‐Man Chu, Wai K. Leung
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45753

Cross-talk among metabolic parameters, esophageal microbiota, and host gene expression following chronic exposure to an obesogenic diet
Cited by: 22
Author(s): Nadeem O. Kaakoush, Virginie Lecomte, Chris Maloney, Margaret J. Morris
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms8081162

A Cross-Sectional Study of the Gut Microbiota Composition in Moscow Long-Livers
Cited by: 7
Author(s): Daria A. Kashtanova, Natalia Klimenko, И. Д. Стражеско, Elizaveta V. Starikova, Oksana E. Glushchenko, Denis Gudkov, О. Н. Ткачева
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms9071484

Screening New Xylanase Biocatalysts from the Mangrove Soil Diversity
Cited by: 1
Author(s): Corinne Ivaldi, Mariane Daou, Laurent Vallon, Alexandra Bisotto, Mireille Haon, Soňa Garajová, Emmanuel Bertrand, Craig B. Faulds, Giuliano Sciara, Adrien Jacotot, Cyril Marchand, Mylène Hugoni, Harivony Rakotoarivonina, Marie‐Noëlle Rosso, Caroline Rémond, Patricia Luis, Éric Record
Software Mentions: 1
Published: about 5 years ago

10.1093/aob/mcy233

Embolism resistance in stems of herbaceous Brassicaceae and Asteraceae is linked to differences in woodiness and precipitation
Cited by: 28
Author(s): Larissa Chacon Dória, Cynthia Meijs, Diego Sotto Podadera, Marcelino del Arco, Erik Smets, Sylvain Delzon, Frédéric Lens
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms9091909

Assessing the Risks of Potential Bacterial Pathogens Attaching to Different Microplastics during the Summer–Autumn Period in a Mariculture Cage
Cited by: 20
Author(s): Dandi Hou, Man Hong, Yanting Wang, Pengsheng Dong, Huangwei Cheng, Huizhen Yan, Zhiyuan Yao, Daoji Li, Kai Wang, Demin Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-00046-6

Comparison of bacterial microbiota of the predatory mite Neoseiulus cucumeris (Acari: Phytoseiidae) and its factitious prey Tyrophagus putrescentiae (Acari: Acaridae)
Cited by: 66
Author(s): Apostolos Pekas, E. Palevsky, Jason C. Sumner, M. Alejandra Perotti, Marta Nešvorná, Jan Hubert
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms8091395

Modulation of the Gut Microbiota Alters the Tumour-Suppressive Efficacy of Tim-3 Pathway Blockade in a Bacterial Species- and Host Factor-Dependent Manner
Cited by: 10
Author(s): Bokyoung Lee, Jieun Lee, Min-Yeong Woo, Mi Jin Lee, Ho‐Joon Shin, Kyongmin Kim, Sun Park
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-00507-y

Cross shelf benthic biodiversity patterns in the Southern Red Sea
Cited by: 31
Author(s): Joanne I. Ellis, Holger Anlauf, Saskia Kurten, Diego Lozano-Cortés, Zahra Hassan Ali Alsaffar, J. Cúrdia, Burton H. Jones, Susana Carvalho
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms8020213

Rhizosphere Microbiome of Arid Land Medicinal Plants and Extra Cellular Enzymes Contribute to Their Abundance
Cited by: 26
Author(s): Abdul Latif Khan, Sajjad Asaf, Raeid M. M. Abed, Yen Ning Chai, Ahmed Al‐Rawahi, Tapan Kumar Mohanta, Ahmed Al‐Rawahi, Daniel P. Schachtman, Ahmed Al‐Harrasi
Software Mentions: 1
Published: over 6 years ago

10.3390/ani11010004

Analysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions
Cited by: 1
Author(s): Giulietta Minozzi, Filippo Biscarini, Emanuela Dalla Costa, Matteo Chincarini, Nicola Ferri, C. Palestrini, Michela Minero, Silvia Mazzola, R. Piccinini, G. Vignola, Simona Cannas
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-00991-2

Tropicalization strengthens consumer pressure on habitat-forming seaweeds
Cited by: 43
Author(s): Salvador Zarco‐Perello, Thomas Wernberg, Tim Langlois, Mathew A. Vanderklift
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00890-6

Culture independent analysis using gnd as a target gene to assess Escherichia coli diversity and community structure
Cited by: 12
Author(s): Adrian L. Cookson, Patrick J. Biggs, Jonathan Marshall, Angela Reynolds, Rose M. Collis, Nigel P. French, Gale Brightwell
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms9081717

Effect of Methionine Supplementation on Rumen Microbiota, Fermentation, and Amino Acid Metabolism in In Vitro Cultures Containing Nitrate
Cited by: 10
Author(s): Faiz‐ul Hassan, Yanxia Guo, Mengwei Li, Zhengyi Tang, Lijuan Peng, Xin Liang, Chengjian Yang
Software Mentions: 1
Published: about 5 years ago

10.1080/20002297.2020.1857998

Salivary bacterial shifts in oral leukoplakia resemble the dysbiotic oral cancer bacteriome
Cited by: 15
Author(s): Divya Gopinath, Chun Wie Chong, Moinak Banerjee, Swagatika Panda, Deviprasad Mandal, Paresh Kumar Behera, Susanta Roychoudhury, Supriya Kheur, MG Botelho, Newell W. Johnson
Software Mentions: 1
Published: over 5 years ago

10.1080/20002297.2020.1761135

Lasting Gammaproteobacteria profile changes characterized hematological cancer patients who developed oral mucositis following conditioning therapy
Cited by: 7
Author(s): Jean-Luc Mougeot, Micaela F. Beckman, Craig B. Stevens, Kathryn G. Almon, Darla S. Morton, Inger von Bültzingslöwen, Michael T. Brennan, Farah Bahrani Mougeot
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-02034-2

Ecological relevance of skeletal fatty acid concentration and composition in Mediterranean scleractinian corals
Cited by: 7
Author(s): Chiara Samorì, Erik Caroselli, Fiorella Prada, Michela Reggi, Simona Fermani, Zvy Dubinsky, Stefano Goffredo, Giuseppe Falini
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms9010039

Lactobacillus iners and gasseri, Prevotella bivia and HPV Belong to the Microbiological Signature Negatively Affecting Human Reproduction
Cited by: 18
Author(s): Giuseppina Campisciano, Valerio Iebba, Gabriella Zito, Stefania Luppi, Monica Martinelli, Leo Fischer, Francesco De Seta, Giuseppe Basile, Giuseppe Ricci, Manola Comar
Software Mentions: 1
Published: over 5 years ago

10.1080/20002297.2019.1617013

Deep sequencing of biofilm microbiomes on dental composite materials
Cited by: 16
Author(s): Georg Conrads, Laura Katharina Wendt, Franziska Hetrodt, Zhi-Luo Deng, Dietmar H. Pieper, Mohamed M. H. Abdelbary, Andree Barg, Irene Wagner‐Döbler, Christian Apel
Software Mentions: 1
Published: over 7 years ago

10.1186/s13568-019-0745-1

Coupled changes of bacterial community and function in the gut of mud crab (Scylla Paramamosain) in response to Baimang disease
Cited by: 16
Author(s): Yiqin Deng, Chang-Hong Cheng, Jiawei Xie, Songlin Liu, Hongling Ma, Feng Jiang, Youlu Su, Zhiyong Guo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01091-x

The response of a boreal deep-sea sponge holobiont to acute thermal stress
Cited by: 47
Author(s): Roger Strand, Steve W Whalan, Nicole S. Webster, Tina Kutti, James Kar‐Hei Fang, Heidi M. Luter, Raymond Bannister
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02782-1

Serum miRNA signature diagnoses and discriminates murine colitis subtypes and predicts ulcerative colitis in humans
Cited by: 28
Author(s): Émilie Viennois, Yuan Zhao, Moon Kwon Han, Bo Xiao, Mingzhen Zhang, Mahadev Prasad, Lixin Wang, Didier Merlin
Software Mentions: 1
Published: about 9 years ago

10.3390/microorganisms7120610

Modulation of Gut Microbiota by Glucosamine and Chondroitin in a Randomized, Double-Blind Pilot Trial in Humans
Cited by: 8
Author(s): Sandi L. Navarro, Lisa Levy, Keith R. Curtis, Johanna W. Lampe, Meredith A.J. Hullar
Software Mentions: 1
Published: over 6 years ago

10.3390/nu11061345

Resistant Starch Is Actively Fermented by Infant Faecal Microbiota and Increases Microbial Diversity
Cited by: 21
Author(s): Geetha Gopalsamy, Elissa Mortimer, Paul Greenfield, Anthony R. Bird, Graeme P. Young, Claus T. Christophersen
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms9010068

Comparative Analysis of Bacterial Communities in Lutzomyia ayacuchensis Populations with Different Vector Competence to Leishmania Parasites in Ecuador and Peru
Cited by: 5
Author(s): Ahmed Tabbabi, Shinya Watanabe, Daiki Mizushima, Abraham G. Cáceres, Eduardo A. Gómez, Daisuke Yamamoto, Longzhu Cui, Yoshihisa Hashiguchi, Hirotomo Kato
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-03282-y

Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation
Cited by: 48
Author(s): Johannes Harter, Mohamed El-Hadidi, Daniel H. Huson, Andreas Kappler, Sebastian Behrens
Software Mentions: 1
Published: about 9 years ago

10.3390/microorganisms8111828

Phosphorus Reduces Negative Effects of Nitrogen Addition on Soil Microbial Communities and Functions
Cited by: 25
Author(s): Zongwei Xia, Jingyi Yang, Changpeng Sang, Xu Wang, Lin Sun, Ping Jiang, Chao Wang, Edith Bai
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-03889-1

Influences of temperature and salinity on physicochemical properties and toxicity of zinc oxide nanoparticles to the marine diatom Thalassiosira pseudonana
Cited by: 41
Author(s): Mana Man Na Yung, Kevin W.H. Kwok, Aleksandra B. Djurišić, John P. Giesy, Kenneth M.Y. Leung
Software Mentions: 1
Published: about 9 years ago

10.1016/j.isci.2021.102280

A small effect of conservation agriculture on soil biodiversity that differs between biological kingdoms and geographic locations
Cited by: 3
Author(s): Paulina Giraldo‐Perez, Victoria Raw, Marc Greven, Matthew R. Goddard
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms8091363

Faecal Microbiota of Dogs Offered a Vegetarian Diet with or without the Supplementation of Feather Meal and either Cornmeal, Rye or Fermented Rye: A Preliminary Study
Cited by: 6
Author(s): Julia Hankel, Amr Abd El‐Wahab, Richard Grone, Birgit Keller, Eric Galvez, Till Strowig, Christian Visscher
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms7100392

Mediterranean Native Leguminous Plants: A Reservoir of Endophytic Bacteria with Potential to Enhance Chickpea Growth under Stress Conditions
Cited by: 17
Author(s): Clarisse Brı́gido, Esther Menéndez, Ana Paço, Bernard R. Glick, Anabela D. F. Belo, Maria R. Félix, Marina Vieira de Carvalho
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.isci.2021.103113

Postnatal prebiotic supplementation in rats affects adult anxious behaviour, hippocampus, electrophysiology, metabolomics, and gut microbiota
Cited by: 5
Author(s): Sonia Spitzer, Andrzej Tkacz, Hélène M. Savignac, Matthew J. Cooper, Natasa Giallourou, Edward O. Mann, David M. Bannerman, Jonathan R. Swann, Daniel C. Anthony, Philip S. Poole, Philip W. J. Burnet
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-05220-4

Regional and local environmental conditions do not shape the response to warming of a marine habitat-forming species
Cited by: 23
Author(s): Carolina Crisci, J. B. Ledoux, Kenza Mokhtar-Jamaï, Marc Bally, Nathaniel Bensoussan, Didier Aurelle, Emma Cebrián, Rafael Coma, Jean‐Pierre Féral, Marie Rivière, Cristina Linares, Paula López‐Sendino, Christian Marschal, Marta Ribes, Núria Teixidó, Frédéric Zuberer, Joaquim Garrabou
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.21490

Breast tissue, oral and urinary microbiomes in breast cancer
Cited by: 116
Author(s): Hannah Wang, Jessica Altemus, Feizollah Niazi, Holly Green, Benjamin C. Calhoun, Charles D. Sturgis, Stephen R. Grobmyer, Charis Eng
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-05251-x

Effects of combined dredging-related stressors on sponges: a laboratory approach using realistic scenarios
Cited by: 15
Author(s): Mari Carmen Pineda, Brian Strehlow, Jasmine Kamp, Alan Duckworth, Ross Jones, Nicole S. Webster
Software Mentions: 1
Published: about 9 years ago

10.3390/microorganisms8020170

Revealing the Variation and Stability of Bacterial Communities in Tomato Rhizosphere Microbiota
Cited by: 33
Author(s): Zhiqiang Cheng, Shaonan Lei, Ye Li, Wei Huang, Rongqin Ma, Juan Xiong, Ting Zhang, Lingyue Jin, Hafeez Ul Haq, Xiaohong Xu, Baoyu Tian
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8091278

Effect of Sample Collection (Manual Expression vs. Pumping) and Skimming on the Microbial Profile of Human Milk Using Culture Techniques and Metataxonomic Analysis
Cited by: 11
Author(s): Maricela Rodríguez‐Cruz, Claudio Alba, Marina Aparicio, María Ángeles Checa, Leónides Fernández, Juan Miguel Díaz Rodríguez
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms9081755

The Effect of Common Viral Inactivation Techniques on 16S rRNA Amplicon-Based Analysis of the Gut Microbiota
Cited by: 0
Author(s): Zachary L. McAdams, Kevin L. Gustafson, Aaron C. Ericsson
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-02516-3

Comparison of DNA-, PMA-, and RNA-based 16S rRNA Illumina sequencing for detection of live bacteria in water
Cited by: 94
Author(s): Ru Li, Hein Min Tun, Musarrat Jahan, Zhengxiao Zhang, Ayush Kumar, W. G. Dilantha Fernando, Annemieke Farenhorst, Ehsan Khafipour
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-06013-5

Assessment of different techniques for 3D superimposition of serial digital maxillary dental casts on palatal structures
Cited by: 63
Author(s): Georgios Vasilakos, Roman Schilling, Demetrios J. Halazonetis, Nikolaos Gkantidis
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-06394-7

Threats to large brown algal forests in temperate seas: the overlooked role of native herbivorous fish
Cited by: 46
Author(s): Fabrizio Gianni, Fabrizio Bartolini, Alexis Pey, Mathieu Laurent, Gustavo M. Martins, Laura Airoldi, Luisa Mangialajo
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.25276

Both the intratumoral immune and microbial microenvironment are linked to recurrence in human colon cancer: results from a prospective, multicenter nodal ultrastaging trial
Cited by: 5
Author(s): Juliana Noguti, Alfred A. Chan, B Bandera, Colin Brislawn, Mladjan Protić, Myung Shin Sim, Janet Jansson, Anton J. Bilchik, Delphine J. Lee
Software Mentions: 1
Published: over 8 years ago

10.1186/s40168-017-0345-8

Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing
Cited by: 42
Author(s): Petra Schwendner, Alexander Mahnert, Kaisa Koskinen, Christine Moissl-Eichinger, Simon Barczyk, Reinhard Wirth, Gabriele Berg, Petra Rettberg
Software Mentions: 1
Published: almost 9 years ago

10.1186/s40168-020-00915-9

Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula
Cited by: 78
Author(s): Shawn P. Brown, Michael A. Grillo, Justin C. Podowski, Katy D. Heath
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-021-01109-7

Bacterial colonization dynamics and antibiotic resistance gene dissemination in the hospital environment after first patient occupancy: a longitudinal metagenetic study
Cited by: 8
Author(s): Tilman E. Klassert, Rasmus Leistner, Cristina Zubiría-Barrera, Magdalena Stock, Marta López, Robert Neubert, Dominik Driesch, Petra Gastmeier, Hortense Slevogt
Software Mentions: 1
Published: about 5 years ago

10.1186/s40168-016-0226-6

The effect of cigarette smoking on the oral and nasal microbiota
Cited by: 106
Author(s): Guoqin Yu, Stephen Phillips, Mitchell H. Gail, James J. Goedert, Michael S. Humphrys, Jacques Ravel, Yan-Fang Ren, Neil E. Caporaso
Software Mentions: 1
Published: over 9 years ago

10.3390/ani11020448

Allium-Based Phytobiotic Enhances Egg Production in Laying Hens through Microbial Composition Changes in Ileum and Cecum
Cited by: 21
Author(s): Miguel Rabelo-Ruiz, Juan José Ariza-Romero, María Jesús Zurita-González, Antonio Manuel Martín-Platero, Alberto Baños, Mercedes Maqueda, Eva Valdivia, Manuel Martínez‐Bueno, Juan Manuel Peralta‐Sánchez
Software Mentions: 1
Published: over 5 years ago

10.1111/jre.12642

Qualitative and quantitative differences in the subgingival microbiome of the restored and unrestored teeth
Cited by: 9
Author(s): Steven W. H. Rademacher, Egija Zaura, Cornelis J. Kleverlaan, Mark J. Buijs, Wim Crielaard, Bruno G. Loos, Marja L. Laine
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-015-0120-7

Variable responses of human and non-human primate gut microbiomes to a Western diet
Cited by: 112
Author(s): Katherine R. Amato, Carl J. Yeoman, Gabriela Cerda, Christopher A. Schmitt, Jennifer Danzy Cramer, Margret E. Berg Miller, Andrés Gómez, Trudy R. Turner, Brenda A. Wilson, Rebecca M. Stumpf, Karen E. Nelson, Bryan A. White, Rob Knight, Steven R. Leigh
Software Mentions: 1
Published: almost 11 years ago

10.3390/ani11092750

Dietary Phospholipids Enhance Growth Performance and Modulate Cold Tolerance in Meagre (Argyrosomus regius) Juveniles
Cited by: 1
Author(s): Ismael Hachero‐Cruzado, Manuel Manchado
Software Mentions: 1
Published: almost 5 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Penalties:

Papers Mentioning PERMANOVA 6,292