cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1186/s40168-018-0471-y

Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates
Cited by: 29
Author(s): Zhimin Zhang, Dapeng Li
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm9092785

Microbiome Patterns in Matched Bile, Duodenal, Pancreatic Tumor Tissue, Drainage, and Stool Samples: Association with Preoperative Stenting and Postoperative Pancreatic Fistula Development
Cited by: 11
Author(s): Melanie Langheinrich, Stefan Wirtz, Barbara Kneis, Matthias M Gittler, Olaf Tyc, Robert Schierwagen, Maximilian Brunner, Christian Krautz, Georg F. Weber, Christian Pilarsky, Jonel Trebicka, Abbas Agaimy, Robert Grützmann, Stephan Kersting
Software Mentions: 1
Published: about 4 years ago

10.3390/jcm9113621

Identification of Vaginal Microbial Communities Associated with Extreme Cervical Shortening in Pregnant Women
Cited by: 9
Author(s): Monica Di Paola, Viola Seravalli, Sara Paccosi, Carlotta Linari, Astrid Parenti, Carlotta De Filippo, Michele Tanturli, Francesco Vitali, Maria Gabriella Torcia, Mariarosaria Di Tommaso
Software Mentions: 1
Published: about 4 years ago

10.3390/nu13082839

Changes in the Gut Bacteria Composition of Healthy Men with the Same Nutritional Profile Undergoing 10-Week Aerobic Exercise Training: A Randomized Controlled Trial
Cited by: 12
Author(s): Aimara da Cunha Resende, Geovana Sf Leite, Antônio Herbert Lancha
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22020689

Paternal Methyl Donor Supplementation in Rats Improves Fertility, Physiological Outcomes, Gut Microbial Signatures and Epigenetic Markers Altered by High Fat/High Sucrose Diet
Cited by: 7
Author(s): Faye Chleilat, Alana Schick, Julie Deleemans, Raylene A. Reimer
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-55425-y

A simple mooring modification reduces impacts on seagrass meadows
Cited by: 8
Author(s): Anna L. Luff, Emma V. Sheehan, Mark Parry, Nicholas D. Higgs
Software Mentions: 1
Published: almost 5 years ago

10.3390/biomedicines9081065

Clostridium butyricum MIYAIRI 588 Modifies Bacterial Composition under Antibiotic-Induced Dysbiosis for the Activation of Interactions via Lipid Metabolism between the Gut Microbiome and the Host
Cited by: 13
Author(s): Tadashi Ariyoshi, Mao Hagihara, Susumu Tomono, Shuhei Eguchi, Ayaka Minemura, Daiki Miura, Koichiro Oka, Motomichi Takahashi, Yuka Yamagishi, Hiroshige Mikamo
Software Mentions: 1
Published: over 3 years ago

10.3390/biomedicines9070753

The Gut Microbiota-Immunity Axis in ALS: A Role in Deciphering Disease Heterogeneity?
Cited by: 22
Author(s): Elena Niccolai, Vincenzo Di Pilato, Giulia Nannini, Simone Baldi, Edda Russo, Elisabetta Zucchi, Ilaria Martinelli, Marta Menicatti, Gianluca Bartolucci, Jessica Mandrioli, Amedeo Amedei
Software Mentions: 1
Published: over 3 years ago

10.3390/biomedicines8090349

Lung Microbiome Differentially Impacts Survival of Patients with Non-Small Cell Lung Cancer Depending on Tumor Stroma Phenotype
Cited by: 23
Author(s): О. В. Ковалева, P. A. Podlesnaya, М. А. Рашидова, Daria V. Samoilova, Anatoly Petrenko, I. B. Zborovskaya, В В Мочальникова, С. В. Черкасов, Yuriy A. Khlopko, А. О. Плотников, Alexei Gratchev
Software Mentions: 1
Published: about 4 years ago

10.3390/biomedicines9070743

Prognostic Significance of the Microbiome and Stromal Cells Phenotype in Esophagus Squamous Cell Carcinoma
Cited by: 7
Author(s): О. В. Ковалева, P. A. Podlesnaya, М. А. Рашидова, Daria V. Samoilova, Anatoly Petrenko, В В Мочальникова, С. В. Черкасов, Yuriy A. Khlopko, А. О. Плотников, Alexei Gratchev
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11010034

Prophylactic Treatment with Vitamins C and B2 for Methotrexate-Induced Gastrointestinal Mucositis
Cited by: 10
Author(s): Ana Rita da Silva Ferreira, Hannah R. Wardill, Rick Havinga, Wim J. E. Tissing, Hermie J. M. Harmsen
Software Mentions: 1
Published: almost 4 years ago

10.3390/biom10040559

Variation in ω-3 and ω-6 Polyunsaturated Fatty Acids Produced by Different Phytoplankton Taxa at Early and Late Growth Phase
Cited by: 16
Author(s): Sami J. Taipale, Elina Peltomaa, Pauliina Salmi
Software Mentions: 1
Published: over 4 years ago

10.3390/biom10050797

Study of Synthesis Pathways of the Essential Polyunsaturated Fatty Acid 20:5n-3 in the Diatom Chaetoceros Muelleri Using 13C-Isotope Labeling
Cited by: 14
Author(s): Marine Remize, F. Planchon, Andrew Loh, Fabienne Le Grand, Antoine Bideau, Nelly Le Goïc, Elodie Fleury, Philippe Miner, Rudolph Corvaisier, Aswani K. Volety, Philippe Soudant
Software Mentions: 1
Published: over 4 years ago

10.1186/s13568-018-0599-y

Microbial community and diversity in the feces of Sichuan takin (Budorcas taxicolor tibetana) as revealed by Illumina Miseq sequencing and quantitative real-time PCR
Cited by: 4
Author(s): Hongxiang Zhu, Dong Zeng, Ning Wang, Lili Niu, Yi Zhou, Yan Zeng, Xueqin Ni
Software Mentions: 1
Published: over 6 years ago

10.1186/s13568-021-01233-5

Effect of liquid volume and microflora source on degradation rate and microbial community in corn stover degradation
Cited by: 2
Author(s): Jingjing Wang, Dan Zhu, Siqi Zhao, Sheng Xu, Rong Yang, Wei Zhao, Xiaoxia Zhang, Zhiyong Huang
Software Mentions: 1
Published: over 3 years ago

10.1186/s13568-019-0745-1

Coupled changes of bacterial community and function in the gut of mud crab (Scylla Paramamosain) in response to Baimang disease
Cited by: 16
Author(s): Yiqin Deng, Chang-Hong Cheng, Jiawei Xie, Songlin Liu, Hongling Ma, Feng Jiang, Youlu Su, Zhiyong Guo
Software Mentions: 1
Published: almost 6 years ago

10.1111/apt.15375

Consistent alterations in faecal microbiomes of patients with primary sclerosing cholangitis independent of associated colitis
Cited by: 63
Author(s): Malte Rühlemann, Timur Liwinski, Femke-Anouska Heinsen, Corinna Bang, Roman Zenouzi, Martin Kummen, Louise B. Thingholm, Maria Tempel, Wolfgang Lieb, Tom H. Karlsen, Ansgar W. Lohse, Johannes Espolin Roksund Hov, Gerald Denk, Frank Lammert, Marcin Krawczyk, Christoph Schramm, André Franke
Software Mentions: 1
Published: over 5 years ago

10.1152/ajpendo.00407.2018

Obeticholic acid ameliorates dyslipidemia but not glucose tolerance in mouse model of gestational diabetes
Cited by: 11
Author(s): Saraid McIlvride, Vanya Nikolova, Hei Man Fan, Julie A. K. McDonald, Annika Wahlström, Elena Bellafante, Eugène Jansen, Luciano Adorini, D. A. Shapiro, Peter M. Jones, Julian R. Marchesi, Hanns‐Ulrich Marschall, Catherine Williamson
Software Mentions: 1
Published: over 5 years ago

10.1152/ajpgi.00126.2020

Obeticholic acid improves fetal bile acid profile in a mouse model of gestational hypercholanemia
Cited by: 7
Author(s): Vanessa Pataia, Saraid McIlvride, Georgia Papacleovoulou, Caroline Ovadia, Julie A. K. McDonald, Annika Wahlström, Eugène Jansen, Luciano Adorini, D. A. Shapiro, Julian R. Marchesi, Hanns‐Ulrich Marschall, Catherine Williamson
Software Mentions: 1
Published: over 4 years ago

10.1164/rccm.202002-0460OC

The Respiratory Microbiome in Chronic Hypersensitivity Pneumonitis Is Distinct from That of Idiopathic Pulmonary Fibrosis
Cited by: 40
Author(s): Rachele Invernizzi, Benjamin Wu, Joseph Barnett, Poonam Ghai, Shaun Kingston, Richard Hewitt, Johanna Feary, Yonghua Li, Felix Chua, Zhe Wu, Athol U. Wells, Peter M. George, Elisabetta Renzoni, Andrew G. Nicholson, Alexandra Rice, Anand Devaraj, Leopoldo N. Segal, Adam Byrne, Toby M. Maher, Clare M. Lloyd, Philip L. Molyneaux
Software Mentions: 1
Published: almost 4 years ago

10.1007/s13280-018-1088-x

Recreational boating degrades vegetation important for fish recruitment
Cited by: 29
Author(s): Joakim P. Hansen, Göran Sundblad, Ulf Bergström, Åsa N. Austin, Serena Donadi, Britas Klemens Eriksson, Johan Eklöf
Software Mentions: 1
Published: about 6 years ago

10.1007/s13280-018-1133-9

Relative impacts of fishing and eutrophication on coastal fish assessed by comparing a no-take area with an environmental gradient
Cited by: 23
Author(s): Lena Bergström, Martin Karlsson, Ulf Bergström, Leif Pihl, Patrik Kraufvelin
Software Mentions: 1
Published: almost 6 years ago

10.5713/ajas.19.0499

β-Carotene prevents weaning-induced intestinal inflammation by modulating gut microbiota in piglets
Cited by: 30
Author(s): Ruonan Li, Lingqian Li, Hong Pan, Wuying Lang, Junnan Hui, Yang Yu, Xin Zheng
Software Mentions: 1
Published: over 3 years ago

10.1186/s42523-019-0012-4

Looking like the locals - gut microbiome changes post-release in an endangered species
Cited by: 36
Author(s): Rowena Chong, Catherine E. Grueber, Samantha Fox, Phil Wise, Vanessa R. Barrs, Carolyn J. Hogg, Katherine Belov
Software Mentions: 1
Published: about 5 years ago

10.1186/s42523-020-00050-8

The microbiota of the surface, dermis and subcutaneous tissue of dog skin
Cited by: 8
Author(s): Rocío García-Fonticoba, Lluís Ferrer, Olga Francino, Anna Cuscó
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-020-00049-1

Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems
Cited by: 18
Author(s): Matthew Barden, Peter Richards‐Rios, Erika Ganda, Luca Lenzi, Richard Eccles, Joseph M. Neary, Jo Oultram, Georgios Oikonomou
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-021-00081-9

Ruminal resistome of dairy cattle is individualized and the resistotypes are associated with milking traits
Cited by: 10
Author(s): Mingyuan Xue, Yunyi Xie, Yifan Zhong, Jianxin Liu, Le Luo Guan, Hui-Zeng Sun
Software Mentions: 1
Published: almost 4 years ago

10.1186/s42523-021-00109-0

Captivity reduces diversity and shifts composition of the Brown Kiwi microbiome
Cited by: 28
Author(s): Priscilla A San Juan, Isabel Castro, Manpreet K. Dhami
Software Mentions: 1
Published: over 3 years ago

10.1186/s42523-021-00127-y

Microbial taxa in dust and excreta associated with the productive performance of commercial meat chicken flocks
Cited by: 7
Author(s): Yugal Raj Bindari, Robert J. Moore, Thi Thu Hao Van, Stephen W. Walkden‐Brown, Priscilla F. Gerber
Software Mentions: 1
Published: about 3 years ago

10.1186/s42523-019-0002-6

Distinct microbiotas of anatomical gut regions display idiosyncratic seasonal variation in an avian folivore
Cited by: 19
Author(s): Sergei V. Drovetski, Michael O’Mahoney, Kenan O. Matterson, Brian K. Schmidt, Gary R. Graves
Software Mentions: 1
Published: almost 6 years ago

10.1186/s42523-019-0011-5

Similar bacterial communities on healthy and injured skin of black tip reef sharks
Cited by: 20
Author(s): Claudia Pogoreutz, Mauvis A. Gore, Gabriela Perna, Catriona Millar, Robert Nestler, Rupert Ormond, Christopher R. Clarke, Christian R. Voolstra
Software Mentions: 1
Published: about 5 years ago

10.1186/s42523-019-0009-z

Take care of the environment: housing conditions affect the interplay of nutritional interventions and intestinal microbiota in broiler chickens
Cited by: 29
Author(s): Jannigje G. Kers, Francisca C. Velkers, E.A.J. Fischer, Gerben D. A. Hermes, D.M. Lamot, J.A. Stegeman, Hauke Smidt
Software Mentions: 1
Published: about 5 years ago

10.1186/s42523-020-00060-6

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals
Cited by: 4
Author(s): Meredith Tavenner, Sue M. McDonnell, Amy S. Biddle
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-021-00083-7

Effects of calcium level and source, formic acid, and phytase on phytate degradation and the microbiota in the digestive tract of broiler chickens
Cited by: 8
Author(s): Jochen Krieg, Daniel Borda-Molina, W. Siegert, Vera Sommerfeld, Yung Ping, Hamid Reza Taheri, Dieter Feuerstein, Amélia Camarinha‐Silva, M. Rodehutscord
Software Mentions: 1
Published: over 3 years ago

10.1186/s42523-020-00072-2

Effects of aging on the skin and gill microbiota of farmed seabass and seabream
Cited by: 21
Author(s): Daniela Rosado, Marcos Pérez‐Losada, Ana Pereira, Ricardo Severino, Raquel Xavier
Software Mentions: 1
Published: almost 4 years ago

10.1186/s42523-021-00097-1

Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection
Cited by: 3
Author(s): Jérémy Le Luyer, Quentin Schull, Pauline Auffret, Pierre López, Margaux Crusot, Corinne Belliard, Câline Basset, Quentin Carradec, Julie Poulain, Serge Planes, Denis Saulnier
Software Mentions: 1
Published: over 3 years ago

10.1186/s42523-020-00031-x

Effect of Cyberlindnera jadinii yeast as a protein source on intestinal microbiota and butyrate levels in post-weaning piglets
Cited by: 9
Author(s): Stanislav Iakhno, Özgün Candan Onarman Umu, Ingrid Marie Håkenåsen, Caroline Piercey Åkesson, Liv Torunn Mydland, Charles McL. Press, Henning Sørum, Margareth Øverland
Software Mentions: 1
Published: over 4 years ago

10.1186/s42523-021-00128-x

Low pathogenic avian influenza virus infection retards colon microbiota diversification in two different chicken lines
Cited by: 8
Author(s): Klaudia Chrząstek, Joy Leng, Mohammad Khalid Zakaria, Dagmara Bialy, Roberto La Ragione, Holly Shelton
Software Mentions: 1
Published: about 3 years ago

10.1186/s42523-019-0006-2

Impact of coccidiostat and phytase supplementation on gut microbiota composition and phytate degradation in broiler chickens
Cited by: 7
Author(s): Susanne Künzel, Daniel Borda-Molina, Rebecca A. Kraft, Vera Sommerfeld, Imke Kühn, Amélia Camarinha‐Silva, M. Rodehutscord
Software Mentions: 1
Published: over 5 years ago

10.1186/s42523-020-00028-6

Composition and co-occurrence patterns of the microbiota of different niches of the bovine mammary gland: potential associations with mastitis susceptibility, udder inflammation, and teat-end hyperkeratosis
Cited by: 25
Author(s): Hooman Derakhshani, J.C. Plaizier, Jeroen De Buck, Herman W. Barkema, Ehsan Khafipour
Software Mentions: 1
Published: over 4 years ago

10.3390/ani11051248

Aspergillus oryzae and Aspergillus niger Co-Cultivation Extract Affects In Vitro Degradation, Fermentation Characteristics, and Bacterial Composition in a Diet-Specific Manner
Cited by: 12
Author(s): Fanrong Kong, Na Lü, Yanfang Liu, Zhang Shu, Heng Jiang, Haomin Wang, Wei Wang, Shengli Li
Software Mentions: 1
Published: over 3 years ago

10.3390/ani10050785

Green Tea and Pomegranate Extract Administered During Critical Moments of the Production Cycle Improves Blood Antiradical Activity and Alters Cecal Microbial Ecology of Broiler Chickens
Cited by: 11
Author(s): Vera Perricone, Marcello Comi, Carlotta Giromini, R. Rebucci, Alessandro Agazzi, G. Savoini, V. Bontempo
Software Mentions: 1
Published: over 4 years ago

10.3390/ani11041185

Schizochytrium sp. (T18) Oil as a Fish Oil Replacement in Diets for Juvenile Rainbow Trout (Oncorhynchus mykiss): Effects on Growth Performance, Tissue Fatty Acid Content, and Lipid-Related Transcript Expression
Cited by: 11
Author(s): Angelisa T. Y. Osmond, Michael T. Arts, Jennifer R. Hall, Matthew L. Rise, Richard P. Bazinet, Roberto E. Armenta, Stefanie M. Colombo
Software Mentions: 1
Published: over 3 years ago

10.3390/ani11040976

The Influence of Diet Change and Oral Metformin on Blood Glucose Regulation and the Fecal Microbiota of Healthy Horses
Cited by: 5
Author(s): Aaron C. Ericsson, Philip J. Johnson, Lyndsy M. Gieche, Chelsea Zobrist, Katie Bucy, Kile S. Townsend, Lynn M. Martin, Alison M. LaCarrubba
Software Mentions: 1
Published: over 3 years ago

10.3390/ani11061534

Successful Use of Geochemical Tools to Trace the Geographic Origin of Long-Snouted Seahorse Hippocampus guttulatus Raised in Captivity
Cited by: 2
Author(s): Ana Elisa Cabral, Fernando Ricardo, Carla Patinha, Eduardo Ferreira da Silva, Miguel Correia, Jorge Palma, Miquel Planas, Ricardo Calado
Software Mentions: 1
Published: over 3 years ago

10.3390/ani9040143

The Effects of Dietary Insect Meal from Hermetia illucens Prepupae on Autochthonous Gut Microbiota of Rainbow Trout (Oncorhynchus mykiss)
Cited by: 93
Author(s): Simona Rimoldi, Elisabetta Gini, Federica Iannini, Laura Gasco, Genciana Terova
Software Mentions: 1
Published: over 5 years ago

10.3390/ani9040151

Gut Microbiota Shifts in Pup Athymic BALB/c Mice: An Updated Identification in Nude Mice
Cited by: 0
Author(s): Yuting Li, Hao Sun, Bowen Du, Hui Xu
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11082219

Late Gestation Maternal Feed Restriction Decreases Microbial Diversity of the Placenta While Mineral Supplementation Improves Richness of the Fetal Gut Microbiome in Cattle
Cited by: 9
Author(s): Gwendolynn L Hummel, Kelly L Woodruff, Kathy J. Austin, Ryan M Knuth, Scott Lake, Hannah C Cunningham-Hollinger
Software Mentions: 1
Published: over 3 years ago

10.3390/ani11020577

Expeller-Pressed Canola (Brassica napus) Meal Modulates the Structure and Function of the Cecal Microbiota, and Alters the Metabolome of the Pancreas, Liver, and Breast Muscle of Broiler Chickens
Cited by: 9
Author(s): G. Douglas Inglis, Benjamin D. Wright, Stephanie A. Sheppard, D. Wade Abbott, M. A. Oryschak, Tony Montina
Software Mentions: 1
Published: almost 4 years ago

10.3390/ani11051463

Characterization of Microbiome on Feces, Blood and Milk in Dairy Cows with Different Milk Leucocyte Pattern
Cited by: 12
Author(s): Elisa Scarsella, A. Zecconi, Michela Cintio, Bruno Stefanon
Software Mentions: 1
Published: over 3 years ago

10.3390/ani11092750

Dietary Phospholipids Enhance Growth Performance and Modulate Cold Tolerance in Meagre (Argyrosomus regius) Juveniles
Cited by: 1
Author(s): Ismael Hachero‐Cruzado, Manuel Manchado
Software Mentions: 1
Published: about 3 years ago

10.3390/ani11020448

Allium-Based Phytobiotic Enhances Egg Production in Laying Hens through Microbial Composition Changes in Ileum and Cecum
Cited by: 21
Author(s): Miguel Rabelo-Ruiz, Juan José Ariza-Romero, María Jesús Zurita-González, Antonio Manuel Martín-Platero, Alberto Baños, Mercedes Maqueda, Eva Valdivia, Manuel Martínez‐Bueno, Juan Manuel Peralta‐Sánchez
Software Mentions: 1
Published: almost 4 years ago

10.3390/ani11010004

Analysis of Hindgut Microbiome of Sheep and Effect of Different Husbandry Conditions
Cited by: 1
Author(s): Giulietta Minozzi, Filippo Biscarini, Emanuela Dalla Costa, Matteo Chincarini, Nicola Ferri, C. Palestrini, Michela Minero, Silvia Mazzola, R. Piccinini, G. Vignola, Simona Cannas
Software Mentions: 1
Published: almost 4 years ago

10.1093/aob/mcy233

Embolism resistance in stems of herbaceous Brassicaceae and Asteraceae is linked to differences in woodiness and precipitation
Cited by: 28
Author(s): Larissa Chacon Dória, Cynthia Meijs, Diego Sotto Podadera, Marcelino del Arco, Erik Smets, Sylvain Delzon, Frédéric Lens
Software Mentions: 1
Published: almost 6 years ago

10.3390/antibiotics10060643

Core Altered Microorganisms in Colitis Mouse Model: A Comprehensive Time-Point and Fecal Microbiota Transplantation Analysis
Cited by: 41
Author(s): Lijun Shang, Hongbin Liu, Haitao Yu, Meixia Chen, Tianren Yang, Xiangfang Zeng, Shiyan Qiao
Software Mentions: 1
Published: over 3 years ago

10.3390/antibiotics10030269

Allium Extract Implements Weaned Piglet’s Productive Parameters by Modulating Distal Gut Microbiota
Cited by: 15
Author(s): Miguel Rabelo-Ruiz, Claudia Teso-Pérez, Juan Manuel Peralta‐Sánchez, Juan José Ariza, Antonio Manuel Martín-Platero, Óscar Casabuena-Rincón, Patricia Vázquez-Chas, Enrique Guillamón, M. A. Aguinaga, Mercedes Maqueda, Eva Valdivia, Alberto Baños, Manuel Martínez‐Bueno
Software Mentions: 1
Published: over 3 years ago

10.3390/antibiotics10040352

Characterization of Environmental and Cultivable Antibiotic-Resistant Microbial Communities Associated with Wastewater Treatment
Cited by: 4
Author(s): Alicia Sorgen, James E. Johnson, Kevin Lambirth, Sandra M. Clinton, Molly C. Redmond, Anthony A. Fodor, Cynthia Gibas
Software Mentions: 1
Published: over 3 years ago

10.1128/AAC.01395-19

Multiple-Ascending-Dose Phase 1 Clinical Study of the Safety, Tolerability, and Pharmacokinetics of CRS3123, a Narrow-Spectrum Agent with Minimal Disruption of Normal Gut Microbiota
Cited by: 11
Author(s): Barbara Lomeli, Hal Galbraith, Jared Schettler, George A. Saviolakis, Wael Elamin, Blaire L. Osborn, Jacques Ravel, Keith Z. Hazleton, Catherine Lozupone, Ronald J. Evans, Stacie Bell, Urs A. Ochsner, Thale C. Jarvis, Shahida Baqar, Nebojša Janjić
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13756-021-00915-w

Investigating potential transmission of antimicrobial resistance in an open-plan hospital ward: a cross-sectional metagenomic study of resistome dispersion in a lower middle-income setting
Cited by: 1
Author(s): Anushia Ashokan, Josh Hanson, Ne Myo Aung, Mar Mar Kyi, Steven Taylor, Jocelyn M. Choo, Erin Flynn, Fredrick M. Mobegi, Morgyn S. Warner, Steve Wesselingh, Mark Boyd, Geraint B. Rogers
Software Mentions: 1
Published: over 3 years ago

10.3390/antiox9070640

The Interaction between Mitochondrial Oxidative Stress and Gut Microbiota in the Cardiometabolic Consequences in Diet-Induced Obese Rats
Cited by: 23
Author(s): Adriana Ortega‐Hernández, Ernesto Martínez‐Martínez, Rubén Gómez-Gordo, Natalia López‐Andrés, Amaya Fernández‐Celis, Beatriz Gutiérrrez-Miranda, Marı́a Luisa Nieto, Teresa Alarcón, Claudio Alba, Dulcenombre Gómez-Garré, Victoria Cachofeiro
Software Mentions: 1
Published: over 4 years ago

10.1093/aobpla/plu056

Belowground legacies of Pinus contorta invasion and removal result in multiple mechanisms of invasional meltdown
Cited by: 70
Author(s): Ian A. Dickie, Mark G. St. John, G. W. Yeates, Chris W. Morse, Karen I. Bonner, Kate H. Orwin, Duane A. Peltzer
Software Mentions: 1
Published: almost 11 years ago

10.1093/aobpla/plt043

Banking on the past: seed banks as a reservoir for rare and native species in restored vernal pools
Cited by: 34
Author(s): Akasha M. Faist, Scott Ferrenberg, Sharon K. Collinge
Software Mentions: 1
Published: almost 12 years ago

10.1093/aobpla/plaa029

The impact of <i>Spodoptera exigua</i> herbivory on <i>Meloidogyne incognita</i>-induced root responses depends on the nematodes’ life cycle stages
Cited by: 12
Author(s): Crispus M Mbaluto, Esraa M Ahmad, Melody Fu, Ainhoa Martínez‐Medina, Nicole M. van Dam
Software Mentions: 1
Published: over 4 years ago

10.1093/aobpla/plv018

Changes in plant species composition of coastal dune habitats over a 20-year period
Cited by: 37
Author(s): Silvia Del Vecchio, Irene Prisco, Alicia Teresa Rosario Acosta, Angela Stanisci
Software Mentions: 1
Published: almost 10 years ago

10.1093/aobpla/plw004

Changes in composition, ecology and structure of high-mountain vegetation: a re-visitation study over 42 years
Cited by: 63
Author(s): Alberto Evangelista, Ludovico Frate, María Laura Carranza, Fabio Attorre, Giovanni Pelino, Angela Stanisci
Software Mentions: 1
Published: over 9 years ago

10.1093/aobpla/plv123

Effects of disturbance regime on carbohydrate reserves in meadow plants
Cited by: 12
Author(s): Štěpán Janeček, Alena Bartušková, Michael Bartoš, Jan Altman, Francesco de Bello, Jiří Doležal, Vít Latzel, Vojtěch Lanta, Jan Lepš, Jitka Klimešová
Software Mentions: 1
Published: almost 10 years ago

10.1128/AEM.01235-16

The Microbiota of Breast Tissue and Its Association with Breast Cancer
Cited by: 347
Author(s): Camilla Urbaniak, Gregory B. Gloor, Muriel Brackstone, Leslie Scott, Mark Tangney, Gregor Reid
Software Mentions: 1
Published: over 8 years ago

10.1128/AEM.02615-16

Alternative Protein Sources in the Diet Modulate Microbiota and Functionality in the Distal Intestine of Atlantic Salmon (Salmo salar)
Cited by: 124
Author(s): Karina Gajardo, Alexander Jaramillo-Torres, Trond M. Kortner, Daniel L. Merrifield, John Tinsley, Anne Marie Bakke, Åshild Krogdahl
Software Mentions: 1
Published: over 7 years ago

10.1128/AEM.00735-19

Optimizing the Production of Nursery-Based Biological Soil Crusts for Restoration of Arid Land Soils
Cited by: 25
Author(s): Julie Bethany, Ana Giraldo-Silva, Corey Nelson, Nichole N. Barger, Ferrán García-Pichel
Software Mentions: 1
Published: over 5 years ago

10.1128/AEM.02907-20

Transmission Dynamics of Shiga Toxin-Producing Escherichia coli in New Zealand Cattle from Farm to Slaughter
Cited by: 2
Author(s): A. Springer Browne, Anne C. Midwinter, Helen Withers, Adrian L. Cookson, Patrick J. Biggs, Jonathan Marshall, Jackie Benschop, S.C. Hathaway, Lynn Rogers, Shahista Nisa, C. Reed Hranac, Taylor Winkleman, Nigel French
Software Mentions: 1
Published: over 3 years ago

10.1128/AEM.02427-20

Dilution-to-Stimulation/Extinction Method: a Combination Enrichment Strategy To Develop a Minimal and Versatile Lignocellulolytic Bacterial Consortium
Cited by: 23
Author(s): Laura Díaz-García, Sixing Huang, Cathrin Spröer, R. Sierra, Boyke Bunk, Jörg Overmann, Diego Javier Jiménez
Software Mentions: 1
Published: almost 4 years ago

10.1128/AEM.01194-20

The Interactive Effects of Crude Oil and Corexit 9500 on Their Biodegradation in Arctic Seawater
Cited by: 10
Author(s): Taylor R. Gofstein, Matthew J. Perkins, Jennifer A. Field, Mary Beth Leigh
Software Mentions: 1
Published: about 4 years ago

10.1128/AEM.01203-20

Three Candidate Probiotic Strains Impact Gut Microbiota and Induce Anergy in Mice with Cow's Milk Allergy
Cited by: 15
Author(s): Nathalie Esber, Aurélie Mauras, Johanne Delannoy, Chantal Labellie, Camille Mayeur, Marie-Aurore Caillaud, Toma Kashima, Landry Souchaud, Ioannis Nicolis, Nathalie Kapel, Anne‐Judith Waligora‐Dupriet
Software Mentions: 1
Published: about 4 years ago

10.1007/s00253-016-7516-6

Different inocula produce distinctive microbial consortia with similar lignocellulose degradation capacity
Cited by: 61
Author(s): Larisa Cortés-Tolalpa, Diego Javier Jiménez, Maria Julia de Lima Brossi, Joana Falcão Salles, Jan Dirk van Elsas
Software Mentions: 1
Published: over 8 years ago

10.1016/j.apsoil.2016.03.021

Soil properties, seasonality and crop growth stage exert a stronger effect on rhizosphere prokaryotes than the fungal biocontrol agent Fusarium oxysporum f.sp. strigae
Cited by: 10
Author(s): Mary K. Musyoki, Georg Cadisch, Judith Zimmermann, H. Wainwright, Fen D. Beed, Frank Rasche
Software Mentions: 1
Published: about 8 years ago

10.1016/j.aquaculture.2016.07.017

Environmental and physiological factors shape the gut microbiota of Atlantic salmon parr (Salmo salar L.)
Cited by: 272
Author(s): Carola E. Dehler, Christopher J. Secombes, Samuel Martín
Software Mentions: 1
Published: almost 8 years ago

10.1186/2046-9063-9-20

Infaunal macrobenthic community dynamics in a manipulated hyperhaline ecosystem: a long-term study
Cited by: 10
Author(s): Bruno Bellisario, Claudio Carere, Fulvio Cerfolli, Dario Angeletti, Giuseppe Nascetti, Roberta Cimmaruta
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13075-018-1639-3

Functional intraepithelial lymphocyte changes in inflammatory bowel disease and spondyloarthritis have disease specific correlations with intestinal microbiota
Cited by: 36
Author(s): Emilie Regner, Neha Ohri, Andrew Stahly, Mark E. Gerich, Blair Fennimore, Diana Ir, Widian Jubair, Carsten Görg, Janet Siebert, Charles E. Robertson, Liron Caplan, Daniel N. Frank, Kristine A. Kuhn
Software Mentions: 1
Published: over 6 years ago

10.1186/s13075-018-1510-6

Age and fecal microbial strain-specific differences in patients with spondyloarthritis
Cited by: 50
Author(s): Matthew L. Stoll, Pamela F. Weiss, Jennifer E. Weiss, Peter A. Nigrović, Barbara Edelheit, Sydney Bridges, Maria I. Danila, Charles H. Spencer, Marilynn Punaro, Kenneth N. Schikler, Andreas Reiff, Ranjit Kumar, Randy Q. Cron, Casey D. Morrow, Elliot J. Lefkowitz
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12871-018-0642-1

Effects of prebiotic galacto-oligosaccharide on postoperative cognitive dysfunction and neuroinflammation through targeting of the gut-brain axis
Cited by: 71
Author(s): Xu-Dong Yang, Li-Kuan Wang, Haiyin Wang, Jing Liang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12859-021-04199-0

Dysbiosis of the gut microbiome is a risk factor for osteoarthritis in older female adults: a case control study
Cited by: 16
Author(s): Juanjuan Chen, Anqi Wang, Qi Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/1741-7007-11-26

Thyroid hormone actions are temperature-specific and regulate thermal acclimation in zebrafish (Danio rerio)
Cited by: 91
Author(s): Alexander G. Little, Tatsuya Kunisue, Kurunthachalam Kannan, Frank Seebacher
Software Mentions: 1
Published: over 11 years ago

10.1186/s12915-020-00810-7

Temporospatial shifts within commercial laboratory mouse gut microbiota impact experimental reproducibility
Cited by: 16
Author(s): Rabindra K. Mandal, Joshua E. Denny, Morgan L Waide, Qingsheng Li, Neal Bhutiani, Charles D. Anderson, Becca V. Baby, Venkatakrishna R. Jala, Nejat K. Egilmez, Nathan W. Schmidt
Software Mentions: 1
Published: over 4 years ago

10.1186/s12915-021-01003-6

Experimental infection with the hookworm, Necator americanus, is associated with stable gut microbial diversity in human volunteers with relapsing multiple sclerosis
Cited by: 15
Author(s): Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Papaiakovou, Riccardo Scotti, Alba Cortés, Cris S. Constantinescu, Cinzia Cantacessi
Software Mentions: 1
Published: over 3 years ago

10.1186/s12896-019-0578-7

The effect of diet and radiation on the bacterial symbiome of the melon fly, Zeugodacus cucurbitae (Coquillett)
Cited by: 11
Author(s): Elias Asimakis, Mahfuza Khan, Panagiota Stathopoulou, Carlos Cáceres, Kostas Bourtzis, George Tsiamis
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-019-5660-y

Association of breast and gut microbiota dysbiosis and the risk of breast cancer: a case-control clinical study
Cited by: 65
Author(s): Julio Plaza‐Díaz, Ana I. Álvarez‐Mercado, Carmen Maria Ruiz-Marin, Iris Reina-Pérez, Alejandro J. Pérez-Alonso, María Belén Sánchez-Andujar, Pablo Torné, Tania Gallart-Aragón, María Teresa Sánchez-Barrón, Saturnino Reyes Lartategui, Féderico García, Natalia Chueca, Ana Moreno-Delgado, Katia Torres-Martínez, María José Sáez-Lara, Cándido Robles-Sánchez, Mariana F. Fernández, Luis Fontana
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07286-2

An integrative pan-cancer investigation reveals common genetic and transcriptional alterations of AMPK pathway genes as important predictors of clinical outcomes across major cancer types
Cited by: 12
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 1
Published: over 4 years ago

10.1186/s12898-020-00296-5

Soil properties changes earthworm diversity indices in different agro-ecosystem
Cited by: 26
Author(s): Sharanpreet Singh, Ayushi Sharma, Kiran Khajuria, Jaswinder Singh, Adarsh Pal Vig
Software Mentions: 1
Published: over 4 years ago

10.1186/s12898-020-00276-9

Impact of mining on the floristic association of gold mined sites in Southwest Nigeria
Cited by: 10
Author(s): Adegbite A. Adesipo, Sehinde Akinbiola, Olusegun Olufemi Awotoye, Ayobami T. Salami, Dirk Freese
Software Mentions: 1
Published: almost 5 years ago

10.1186/1472-6785-11-30

Acquisition of chemical recognition cues facilitates integration into ant societies
Cited by: 42
Author(s): Christoph von Beeren, Stefan Schulz, Rosli Hashim, Volker Witte
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12862-021-01745-5

Diversity of dinoflagellate assemblages in coastal temperate and offshore tropical waters of Australia
Cited by: 4
Author(s): Tahnee Manning, Arjun Venkatesh Thilagaraj, Dmitri Mouradov, Richard F. Piola, Clare Grandison, Matthew Gordon, Jeff Shimeta, Aidyn Mouradov
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12862-020-01743-z

A multidisciplinary approach to identify priority areas for the monitoring of a vulnerable family of fishes in Spanish Marine National Parks
Cited by: 7
Author(s): Miquel Planas, Cristina Piñeiro‐Corbeira, Carmen Bouza, Inés Castejón‐Silvo, Manuel Vera, Marcos Regueira, Verónica Ochoa, Ignacio Bárbara, Jorge Terrados, Alexandro Chamorro, Rodolfo Barreiro, Jorge Hernández‐Urcera, Irene Alejo, Miguel Ángel Nombela, Manuel Enrique García, Belén G. Pardo, Viviana Peña, Pilar Díaz‐Tapia, Javier Cremades, Beatriz Morales‐Nin
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12862-015-0522-y

Body size, swimming speed, or thermal sensitivity? Predator-imposed selection on amphibian larvae
Cited by: 8
Author(s): Lumı́r Gvoždı́k, Radovan Smolinský
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2148-14-156

Importance of plasticity and local adaptation for coping with changing salinity in coastal areas: a test case with barnacles in the Baltic Sea
Cited by: 34
Author(s): Anna-Lisa Wrange, Carl Andrè, Torbjörn Lundh, Ulrika Lind, Anders Blomberg, Per R. Jonsson, Jonathan N. Havenhand
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12862-018-1222-1

Evolution of contact and alarm calls in the Kenyan endemic Hinde’s babbler (Aves: Passeriformes)
Cited by: 2
Author(s): Jan Christian Habel, Martin Husemann, Werner Ulrich
Software Mentions: 1
Published: over 6 years ago

10.1186/s12876-018-0785-z

Intestinal Candida parapsilosis isolates from Rett syndrome subjects bear potential virulent traits and capacity to persist within the host
Cited by: 9
Author(s): Francesco Strati, Antonio Calabrò, Claudio Donati, Claudio De Felice, Joussef Hayek, Olivier Jousson, Silvia Leoncini, Daniela Renzi, Lisa Rizzetto, Carlotta De Filippo, Duccio Cavalieri
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-021-07746-4

Benchmark of 16S rRNA gene amplicon sequencing using Japanese gut microbiome data from the V1–V2 and V3–V4 primer sets
Cited by: 36
Author(s): Shoichiro Kameoka, Daisuke Motooka, Satoshi Watanabe, Rieko Kubo, Nicolas Jung, Yuki Midorikawa, Natsuko O. Shinozaki, Yu Sawai, Aya Takeda, Shota Nakamura
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-15-1133

The genetics of colony form and function in Caribbean Acropora corals
Cited by: 42
Author(s): Elizabeth M. Hemond, Stefan T. Kaluziak, Steven V. Vollmer
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-019-6175-2

Analysis of the fecal microbiota of fast- and slow-growing rainbow trout (Oncorhynchus mykiss)
Cited by: 37
Author(s): Pratima Chapagain, Brock A. Arivett, Beth M. Cleveland, Donald M. Walker, Mohamed Salem
Software Mentions: 1
Published: about 5 years ago

10.1186/s12877-021-02301-y

The PROMOTe study: targeting the gut microbiome with prebiotics to overcome age-related anabolic resistance: protocol for a double-blinded, randomised, placebo-controlled trial
Cited by: 10
Author(s): Mary Ní Lochlainn, Ayrun Nessa, Alyce Sheedy, Rachel Horsfall, María Paz García, Deborah Hart, Gulsah Akdag, Darioush Yarand, Samuel Wadge, Andrei-Florin Baleanu, Kevin Whelan, Claire J. Steves
Software Mentions: 1
Published: over 3 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292