cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1128/mSphere.00085-17

Bacterial Community Composition Associated with Pyrogenic Organic Matter (Biochar) Varies with Pyrolysis Temperature and Colonization Environment
Cited by: 44
Author(s): Zhongmin Dai, Albert Barberán, Yong Li, Philip C. Brookes, Jianming Xu
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-016-0226-6

The effect of cigarette smoking on the oral and nasal microbiota
Cited by: 106
Author(s): Guoqin Yu, Stephen Phillips, Mitchell H. Gail, James J. Goedert, Michael S. Humphrys, Jacques Ravel, Yan-Fang Ren, Neil E. Caporaso
Software Mentions: 1
Published: over 9 years ago

10.1128/mSphere.00243-17

Butyrate Supplementation at High Concentrations Alters Enteric Bacterial Communities and Reduces Intestinal Inflammation in Mice Infected with Citrobacter rodentium
Cited by: 78
Author(s): Janelle A. Jiminez, Trina C. Uwiera, D. Wade Abbott, Richard R. E. Uwiera, G. Douglas Inglis
Software Mentions: 1
Published: almost 9 years ago

10.3390/nu13051564

Influence of Human Milk on Very Preterms’ Gut Microbiota and Alkaline Phosphatase Activity
Cited by: 10
Author(s): Juliana Morais, Cláudia Marques, Ana Faria, Diana Teixeira, Inês Barreiros-Mota, Catarina Durão, João R. Araújo, Shámila Ismael, Sara Brito, Manuela Cardoso, Israel Macedo, Esmeralda Pereira, Teresa Tomé, Conceição Calhau
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00531-17

Reproductive System Symbiotic Bacteria Are Conserved between Two Distinct Populations of Euprymna scolopes from Oahu, Hawaii
Cited by: 11
Author(s): Allison H. Kerwin, Spencer V. Nyholm
Software Mentions: 1
Published: over 8 years ago

10.1186/s40168-015-0120-7

Variable responses of human and non-human primate gut microbiomes to a Western diet
Cited by: 112
Author(s): Katherine R. Amato, Carl J. Yeoman, Gabriela Cerda, Christopher A. Schmitt, Jennifer Danzy Cramer, Margret E. Berg Miller, Andrés Gómez, Trudy R. Turner, Brenda A. Wilson, Rebecca M. Stumpf, Karen E. Nelson, Bryan A. White, Rob Knight, Steven R. Leigh
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40168-018-0471-y

Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates
Cited by: 29
Author(s): Zhimin Zhang, Dapeng Li
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphere.00219-18

Rectal and Naris Swabs: Practical and Informative Samples for Analyzing the Microbiota of Critically Ill Patients
Cited by: 10
Author(s): Saumya Bansal, Julie T. Nguyen, Aleksandra Leligdowicz, Yu Zhang, Kevin C. Kain, Daniel R. Ricciuto, Bryan Coburn
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphere.00148-18

Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units
Cited by: 137
Author(s): Sydney I. Glassman, Jennifer B. H. Martiny
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu12113410

Exercise and/or Genistein Treatment Impact Gut Microbiota and Inflammation after 12 Weeks on a High-Fat, High-Sugar Diet in C57BL/6 Mice
Cited by: 14
Author(s): Carmen P. Ortega‐Santos, Layla Al‐Nakkash, Corrie M. Whisner
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu12102977

Metabolic Defects Caused by High-Fat Diet Modify Disease Risk through Inflammatory and Amyloidogenic Pathways in a Mouse Model of Alzheimer’s Disease
Cited by: 17
Author(s): Austin M. Reilly, Andy Po‐Yi Tsai, Peter Bor‐Chian Lin, Aaron C. Ericsson, Adrian L. Oblak, Hongxia Ren
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.00358-19

Rectal Swabs from Critically Ill Patients Provide Discordant Representations of the Gut Microbiome Compared to Stool Samples
Cited by: 25
Author(s): Katherine Fair, D.G. Dunlap, Adam Fitch, Tatiana Bogdanovich, Barbara A. Methé, Alison Morris, Bryan J. McVerry, Georgios D. Kitsios
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphere.00763-19

Systematic Analysis of Impact of Sampling Regions and Storage Methods on Fecal Gut Microbiome and Metabolome Profiles
Cited by: 33
Author(s): Yongsheng Liang, Tianyu Dong, Minjian Chen, Lianping He, Tingzhang Wang, Xingyin Liu, Hang Chang, Jian‐Hua Mao, Bo Hang, Antoine M. Snijders, Yankai Xia
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00791-19

Bifidobacterium longum R0175 Protects Rats against <scp>d</scp> -Galactosamine-Induced Acute Liver Failure
Cited by: 22
Author(s): Kaicen Wang, Longxian Lv, Yan Ren, Qiangqiang Wang, Huiyong Jiang, Wenshuai Wu, Yating Li, Jianzhong Ye, Jingjing Wu, Liya Yang, Xiaoyuan Bian, Xianwan Jiang, Yao Lu, Jiao-Jiao Xie, Jian Shen
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00306-20

Bacterial Community Structure Dynamics in Meloidogyne incognita -Infected Roots and Its Role in Worm-Microbiome Interactions
Cited by: 10
Author(s): Timur Yergaliyev, Rivka Alexander-Shani, Hana Dimerets, Shimon Pivonia, David Bird, Shimon Rachmilevitch, Amir Szitenberg
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-019-0659-9

$W_{d}^{*}$-test: robust distance-based multivariate analysis of variance
Cited by: 34
Author(s): Bashir Hamidi, Kristin Wallace, Chenthamarakshan Vasu, Alexander V. Alekseyenko
Software Mentions: 1
Published: over 7 years ago

10.3390/nu12010087

The Timing Effects of Soy Protein Intake on Mice Gut Microbiota
Cited by: 24
Author(s): Konomi Tamura, Hiroyuki Sasaki, Kazuto Shiga, Hiroki Miyakawa, Shigenobu Shibata
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-016-0185-y

Altered gut microbiota in Rett syndrome
Cited by: 100
Author(s): Francesco Strati, Duccio Cavalieri, Davide Albanese, Claudio De Felice, Claudio Donati, Joussef Hayek, Olivier Jousson, Silvia Leoncini, Massimo Pindo, Daniela Renzi, Lisa Rizzetto, Irene Stefanini, Antonino Calabrò, Carlotta De Filippo
Software Mentions: 1
Published: about 10 years ago

10.1128/mSphere.00314-20

Distinct Fecal and Plasma Metabolites in Children with Autism Spectrum Disorders and Their Modulation after Microbiota Transfer Therapy
Cited by: 58
Author(s): Dae Wook Kang, James B. Adams, Troy Vargason, Marina Santiago, Juergen Hahn, Rosa Krajmalnik‐Brown
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.00084-21

Matrix Effects on the Delivery Efficacy of Bifidobacterium animalis subsp. lactis BB-12 on Fecal Microbiota, Gut Transit Time, and Short-Chain Fatty Acids in Healthy Young Adults
Cited by: 7
Author(s): Zhaoyong Ba, Yujin Lee, Huicui Meng, Penny M. Kris-Etherton, Connie J. Rogers, Zachery T. Lewis, David A. Mills, Emily J. Furumoto, M. Laura Rolon, Jennifer Fleming, Robert F. Roberts
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40168-020-00815-y

Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories
Cited by: 148
Author(s): Shan Sun, Roshonda B. Jones, Anthony A. Fodor
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00283-21

Gut Microbiome and Serum Metabolome Alterations Associated with Isolated Dystonia
Cited by: 7
Author(s): Lingyan Ma, Jing Keng, Min Cheng, Hua Pan, Bo Feng, Yongfeng Hu, Tao Feng, Fan Yang
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSphere.00130-21

Local Network Properties of Soil and Rhizosphere Microbial Communities in Potato Plantations Treated with a Biological Product Are Important Predictors of Crop Yield
Cited by: 2
Author(s): Nabeel Imam, Ignacio Belda, Beatriz García-Jiménez, Adrian J. Duehl, James R. Doroghazi, Daniel E. Almonacid, Varghese P. Thomas, Alberto Acedo
Software Mentions: 1
Published: almost 5 years ago

10.3390/nu12061705

The High-Fat Diet Based on Extra-Virgin Olive Oil Causes Dysbiosis Linked to Colorectal Cancer Prevention
Cited by: 19
Author(s): Carmen Rodríguez-García, Cristina Sánchez-Quesada, Ignacio Algarra, José J. Gaforio
Software Mentions: 1
Published: about 6 years ago

10.1128/mSystems.00117-16

Microbial Communities Are Well Adapted to Disturbances in Energy Input
Cited by: 26
Author(s): Nuria Fernández-González, J. A. Huber, Joseph J. Vallino
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40168-015-0126-1

The first microbial environment of infants born by C-section: the operating room microbes
Cited by: 99
Author(s): Hakdong Shin, Zhiheng Pei, Keith A. Martinez, Juana I Rivera-Viñas, Keimari Méndez, Humberto Cavallín, Maria Gloria Domínguez-Bello
Software Mentions: 1
Published: over 10 years ago

10.1128/mSystems.00093-17

Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites
Cited by: 62
Author(s): Lavanya Reddivari, D. N. Rao Veeramachaneni, William A. Walters, Catherine Lozupone, Jennifer S. Palmer, M. K. Kurundu Hewage, Rohil S. Bhatnagar, Amir Almasi‐Hashiani, Mary J. Kennett, Rob Knight, Jairam Vanamala
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSystems.00140-17

Development of the Human Mycobiome over the First Month of Life and across Body Sites
Cited by: 125
Author(s): Tonya Ward, Maria Gloria Domínguez-Bello, Tim Heisel, Gabriel A. Al‐Ghalith, Dan Knights, Cheryl A. Gale
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0092834

Patterns of Deep-Water Coral Diversity in the Caribbean Basin and Adjacent Southern Waters: An Approach based on Records from the R/V Pillsbury Expeditions
Cited by: 10
Author(s): Iván Hernández-Ávila
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0048410

Effects of Non-Indigenous Oysters on Microbial Diversity and Ecosystem Functioning
Cited by: 33
Author(s): Dannielle S. Green, Bas Boots, Tasman P. Crowe
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0066665

Evaluation of Common Methods for Sampling Invertebrate Pollinator Assemblages: Net Sampling Out-Perform Pan Traps
Cited by: 87
Author(s): Tony J. Popic, Yvonne C. Davila, Glenda M. Wardle
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0143123

A Comparison of Microbial Water Quality and Diversity for Ballast and Tropical Harbor Waters
Cited by: 43
Author(s): Charmaine Ng, Thai Hoang Le, Shin Giek Goh, Liang Liang, Yiseul Kim, Joan B. Rose, Karina Gin Yew-Hoong
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0090542

From Trap to Nursery. Mitigating the Impact of an Artisanal Fishery on Cuttlefish Offspring
Cited by: 19
Author(s): Valentina Melli, Emilio Riginella, Marco Aurélio Nalon, Carlotta Mazzoldi
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0123020

Control of Origin of Sesame Oil from Various Countries by Stable Isotope Analysis and DNA Based Markers—A Pilot Study
Cited by: 22
Author(s): Micha Horacek, Karin Hansel-Hohl, K. Burg, Gerhard Soja, Walter Okello-Anyanga, Silvia Fluch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0182271

Temporal dynamics of in-situ fiber-adherent bacterial community under ruminal acidotic conditions determined by 16S rRNA gene profiling
Cited by: 11
Author(s): Renée M. Petri, P. Pourazad, Ratchaneewan Khiaosa‐ard, Fenja Klevenhusen, Barbara U. Metzler‐Zebeli, Qendrim Zebeli
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0171910

Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages
Cited by: 11
Author(s): Shelly Wu, Elizabeth A. Bergey
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0168196

Seasonal Variations in Surface Metabolite Composition of Fucus vesiculosus and Fucus serratus from the Baltic Sea
Cited by: 20
Author(s): Esther Rickert, Martin Wahl, Heike Link, Hannes Richter, Georg Pohnert
Software Mentions: 1
Published: over 9 years ago

10.1128/mSystems.00021-18

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
Cited by: 329
Author(s): Stefan Janssen, Daniel McDonald, Antonio González, José A. Navas-Molina, Lingjing Jiang, Zhenjiang Zech Xu, Kevin Winker, Deborah M. Kado, Eric S. Orwoll, Mark J. Manary, Siavash Mirarab, Rob Knight
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0255633

Microbial communities of poultry house dust, excreta and litter are partially representative of microbiota of chicken caecum and ileum
Cited by: 17
Author(s): Yugal Raj Bindari, Robert J. Moore, Thi Thu Hao Van, Matthew Hilliar, Shu‐Biao Wu, Stephen W. Walkden‐Brown, Priscilla F. Gerber
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0110831

Quantifying Fish Assemblages in Large, Offshore Marine Protected Areas: An Australian Case Study
Cited by: 23
Author(s): Nicole Hill, Neville S. Barrett, Emma Lawrence, J Hulls, Jeffrey M. Dambacher, Scott L. Nichol, Alan Williams, Keith R. Hayes
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0169049

Assessment and Characterisation of Ireland's Green Tides (Ulva Species)
Cited by: 51
Author(s): Alex H. L. Wan, Robert Wilkes, Svenja Heesch, Ricardo Bermejo, Mark P. Johnson, Liam Morrison
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0208281

Effects of acute exposures of 2,4,6-trinitrotoluene and inorganic lead on the fecal microbiome of the green anole (Anolis carolinensis)
Cited by: 7
Author(s): Karl J. Indest, Steven Everman, James H. Lindsay, Carina M. Jung, Jennifer M. Smith, Sandra B. Newell
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0171352

Differences in gut microbiota profile between women with active lifestyle and sedentary women
Cited by: 305
Author(s): Carlo Bressa, María Bailén-Andrino, Jennifer Pérez-Santiago, Rocío González-Soltero, Margarita Pérez, Maria Gregoria Montalvo-Lominchar, José Luis Maté-Muñoz, Raúl Domínguez, Diego A. Moreno, Mar Larrosa
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0091056

Relationships between Meiofaunal Biodiversity and Prokaryotic Heterotrophic Production in Different Tropical Habitats and Oceanic Regions
Cited by: 40
Author(s): Antonio Pusceddu, Cristina Gambi, Cinzia Corinaldesi, Mariaspina Scopa, Roberto Danovaro
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0122632

Fish Assemblages of Mediterranean Marine Caves
Cited by: 17
Author(s): Simona Bussotti, Antonio Franco, Patrice Francour, Paolo Guidetti
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0059310

Bacterial Communities Associated with the Surfaces of Fresh Fruits and Vegetables
Cited by: 333
Author(s): Jonathan W. Leff, Noah Fierer
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0234920

Sanguinarine modulate gut microbiome and intestinal morphology to enhance growth performance in broilers
Cited by: 28
Author(s): Zhu-Ying Liu, Xiaolong Wang, Shu-Qi Ou, De–Xing Hou, Jianhua He
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0240597

Short-term impact of sediment addition on plants and invertebrates in a southern California salt marsh
Cited by: 3
Author(s): Kaelin J. McAtee, Karen M. Thorne, Christine R. Whitcraft
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0150899

Avian Assemblages at Bird Baths: A Comparison of Urban and Rural Bird Baths in Australia
Cited by: 10
Author(s): Grainne Cleary, Holly Parsons, Adrian L. V. Davis, Bill R. Coleman, Darryl Jones, Kelly K. Miller, Michael A. Weston
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0163494

Role of Recruitment Processes in Structuring Coralligenous Benthic Assemblages in the Northern Adriatic Continental Shelf
Cited by: 22
Author(s): Federica Fava, Massimo Ponti, Marco Abbiati
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0119441

Ablation of Tumor Necrosis Factor Is Associated with Decreased Inflammation and Alterations of the Microbiota in a Mouse Model of Inflammatory Bowel Disease
Cited by: 52
Author(s): Yava Jones‐Hall, Ariangela J. Kozik, Cindy H. Nakatsu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0073922

Long-Term Recovery Patterns and Limited Spillover of Large Predatory Fish in a Mediterranean MPA
Cited by: 67
Author(s): Antoni García-Rubies, Bernat Hereu, Míkel Zabala
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0071108

Human Gut Microbiota Changes Reveal the Progression of Glucose Intolerance
Cited by: 584
Author(s): Xiuying Zhang, Dongqian Shen, Zhiwei Fang, Zhuye Jie, Xinmin Qiu, Chunfang Zhang, Yingli Chen, Linong Ji
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0102640

SSU rDNA Sequence Diversity and Seasonally Differentiated Distribution of Nanoplanktonic Ciliates in Neritic Bohai and Yellow Seas as Revealed by T-RFLP
Cited by: 10
Author(s): Jun Dong, Fei Shi, Han Li, Xiaoming Zhang, Xiaozhong Hu, Jun Gong
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0192496

No maternal or direct effects of ocean acidification on egg hatching in the Arctic copepod Calanus glacialis
Cited by: 10
Author(s): Peter Thor, Fanny Vermandele, Marie-Helene Carignan, Sarah Jacque, Piero Calosi
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0213869

16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics
Cited by: 18
Author(s): Christine Tara Peterson, Vandana Sharma, Stanislav N. Iablokov, Levent Albayrak, Kamil Khanipov, Sasha Uchitel, Deepak Chopra, Paul J. Mills, Yuriy Fofanov, Dmitry A. Rodionov, Scott N. Peterson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0203666

Differentiation in fitness-related traits in response to elevated temperatures between leading and trailing edge populations of marine macrophytes
Cited by: 23
Author(s): Catarina Mota, Aschwin H. Engelen, Ester A. Serrão, Márcio A. G. Coelho, Núria Marbà, Dorte Krause‐Jensen, Gareth A. Pearson
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0154790

Effects of Detrital Subsidies on Soft-Sediment Ecosystem Function Are Transient and Source-Dependent
Cited by: 19
Author(s): Rebecca V. Gladstone‐Gallagher, Andrew M. Lohrer, Carolyn J. Lundquist, Conrad A. Pilditch
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0207825

Patterns of salinity regime in coastal lakes based on structure of benthic invertebrates
Cited by: 18
Author(s): Krystian Obolewski, Katarzyna Glińska-Lewczuk, Monika Szymańska, Natalia Mrozińska, Martyna Bąkowska, Aleksander Astel, Sylwia Lew, Ewa Paturej
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0206734

Summer shifts of bacterial communities associated with the invasive brown seaweed Sargassum muticum are location and tissue dependent
Cited by: 46
Author(s): Alexandra Serebryakova, Tânia Aires, Frédérique Viard, Ester Á. Serrão, Aschwin H. Engelen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0222145

Habitat disturbance and the organization of bacterial communities in Neotropical hematophagous arthropods
Cited by: 7
Author(s): Kelly L. Bennett, Alejandro Almanza, W. Owen McMillan, Kristin Saltonstall, Evangelina López Vdovenko, Jorge S. Vinda, Luis C. Mejía, Kaitlin Driesse, Luis F. De Léon, José R. Loaiza
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0103179

Spatio-Temporal Analyses of Symbiodinium Physiology of the Coral Pocillopora verrucosa along Large-Scale Nutrient and Temperature Gradients in the Red Sea
Cited by: 85
Author(s): Yvonne Sawall, Abdulmohsin Al-Sofyani, Eulalia Banguera-Hinestroza, Christian R. Voolstra
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0130823

The Micronesia Challenge: Assessing the Relative Contribution of Stressors on Coral Reefs to Facilitate Science-to-Management Feedback
Cited by: 45
Author(s): Peter Houk, Rodney Camacho, Steven Johnson, Matthew McLean, Selino Maxin, J. H Anson, Eugene Joseph, Osamu Nedlic, Marston Luckymis, Katrina Adams, Don Hess, Emma Kabua, Anthony Yalon, Eva Buthung, Curtis Graham, Trina Leberer, Brett M. Taylor, Robert van Woesik
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0147098

Relative Importance of Biotic and Abiotic Forces on the Composition and Dynamics of a Soft-Sediment Intertidal Community
Cited by: 32
Author(s): Travis G. Gerwing, David Drolet, Diana J. Hamilton, Myriam A. Barbeau
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0032817

Forestry Alters Foraging Efficiency and Crop Contents of Aphid-Tending Red Wood Ants, Formica aquilonia
Cited by: 18
Author(s): Therese Johansson, Heloise Gibb
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0100300

The Genetic Structure of Staphylococcus aureus Populations from the Southwest Pacific
Cited by: 21
Author(s): Stephen Ritchie, Mark G. Thomas, Paul B. Rainey
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0096798

Depth and Medium-Scale Spatial Processes Influence Fish Assemblage Structure of Unconsolidated Habitats in a Subtropical Marine Park
Cited by: 29
Author(s): Arthur L. Schultz, Hamish A. Malcolm, Daniel J Bucher, Michelle Linklater, Stephen Smith
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0161919

Spatio-Temporal Variation in Effects of Upwelling on the Fatty Acid Composition of Benthic Filter Feeders in the Southern Benguela Ecosystem: Not All Upwelling Is Equal
Cited by: 17
Author(s): Eleonora Puccinelli, Christopher D. McQuaid, Margaux Noyon
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0173968

Implication of the intestinal microbiome as a potential surrogate marker of immune responsiveness to experimental therapies in autoimmune diabetes
Cited by: 7
Author(s): James C. Needell, Charles A. Dinarello, Diana Ir, Charles E. Robertson, Sarah Ryan, Miranda Kroehl, Daniel N. Frank, Danny Zipris
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0171715

Variations in the structural and functional diversity of zooplankton over vertical and horizontal environmental gradients en route to the Arctic Ocean through the Fram Strait
Cited by: 24
Author(s): Marta Głuchowska, Emilia Trudnowska, Ilona Goszczko, A. M. Kubiszyn, Katarzyna Błachowiak‐Samołyk, Waldemar Walczowski, Sławomir Kwaśniewski
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0245219

Hepatic steatosis relates to gastrointestinal microbiota changes in obese girls with polycystic ovary syndrome
Cited by: 12
Author(s): Beza Jobira, Daniel N. Frank, Lori Silveira, Laura Pyle, Megan M. Kelsey, Yesenia Garcia‐Reyes, Charles E. Robertson, Diana Ir, Kristen J. Nadeau, Melanie Cree‐Green
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0146122

Effects of Fishing and Fishing Closures on Beach Clams: Experimental Evaluation across Commercially Fished and Non-Fished Beaches before and during Harvesting
Cited by: 13
Author(s): Charles A. Gray
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0044859

Macroalgal Extracts Induce Bacterial Assemblage Shifts and Sublethal Tissue Stress in Caribbean Corals
Cited by: 55
Author(s): Kathleen M. Morrow, Raphael Ritson‐Williams, Cliff Ross, Mark R. Liles, Valerie J. Paul
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0090223

Isolation and Identification of Oedogonium Species and Strains for Biomass Applications
Cited by: 43
Author(s): Rebecca Lawton, Rocky de Nys, Stephen Skinner, Nicholas A. Paul
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0187935

Contrasts in the marine ecosystem of two Macaronesian islands: A comparison between the remote Selvagens Reserve and Madeira Island
Cited by: 25
Author(s): Alan M. Friedlander, Enric Ballesteros, Sabrina Clemente, Emanuel João Gonçalves, Andy Estep, Paul Rose, Enric Sala
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0027103

Rapid Biodiversity Assessment and Monitoring Method for Highly Diverse Benthic Communities: A Case Study of Mediterranean Coralligenous Outcrops
Cited by: 63
Author(s): Silvija Kipson, Maïa Fourt, Núria Teixidó, Emma Cebrián, Edgar Casas, Enric Ballesteros, Míkel Zabala, Joaquim Garrabou
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0049437

Effects of Reef Proximity on the Structure of Fish Assemblages of Unconsolidated Substrata
Cited by: 28
Author(s): Arthur L. Schultz, Hamish A. Malcolm, Daniel J Bucher, Stephen Smith
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0222182

Can we teach a fish how to eat? The impact of bottom and surface feeding on survival and growth of hatchery-reared sea trout parr (Salmo trutta trutta L.) in the wild
Cited by: 5
Author(s): Tomasz Krepski, Robert Czerniawski
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0205307

Burn injury alters the intestinal microbiome’s taxonomic composition and functional gene expression
Cited by: 24
Author(s): Nadine Beckmann, Amanda M. Pugh, Charles C. Caldwell
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0249613

Multisite evaluation of phenotypic plasticity for specialized metabolites, some involved in carrot quality and disease resistance
Cited by: 6
Author(s): Wilfried Chevalier, Sitti-Anlati Moussa, Miguel Medeiros Netto Ottoni, Cécile Dubois-Laurent, Sébastien Huet, Christophe Aubert, Elsa Desnoues, B. Navez, V. Cottet, Guillaume Chalot, Michel Jost, Laure Barrot, Gerald Freymark, Maarten Uittenbogaard, François Chaniet, Anita Suel, Marie-Hélène Bouvier Merlet, Latifa Hamama, Valérie Le Clerc, Mathilde Briard, Didier Peltier, Emmanuel Geoffriau
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0139848

Community Structure and Function of Amphibian Skin Microbes: An Experiment with Bullfrogs Exposed to a Chytrid Fungus
Cited by: 73
Author(s): Jenifer B. Walke, Matthew H. Becker, Stephen C. Loftus, Leanna House, Thais L. Teotonio, Kevin P. C. Minbiole, Lisa K. Belden
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0118390

Large-Scale Geographic Variation in Distribution and Abundance of Australian Deep-Water Kelp Forests
Cited by: 63
Author(s): Ezequiel M. Marzinelli, Stefan B. Williams, Russell C. Babcock, Neville S. Barrett, Craig R. Johnson, Alan Jordan, Gary A. Kendrick, Oscar Pizarro, Dan Smale, Peter D. Steinberg
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0176419

Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea
Cited by: 110
Author(s): Marta Pascual, Borja Rives, Celia Schunter, Enrique Macpherson
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0104996

Random Whole Metagenomic Sequencing for Forensic Discrimination of Soils
Cited by: 38
Author(s): Anastasia S. Khodakova, Renee J. Smith, Leigh A. Burgoyne, Damien Abarno, Adrian Linacre
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0187650

Oil palm monoculture induces drastic erosion of an Amazonian forest mammal fauna
Cited by: 45
Author(s): Ana Cristina Mendes‐Oliveira, Carlos A. Peres, Paula Cristina Rodrigues de Almeida Maués, Geovana Linhares de Oliveira, Ivo Gabriel Barros Mineiro, Susanne Lúcia Silva de Maria, Renata de Lima
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0197502

Enhanced transfer of organic matter to higher trophic levels caused by ocean acidification and its implications for export production: A mass balance approach
Cited by: 4
Author(s): Tim Boxhammer, Jan Taucher, Lennart T. Bach, Eric P. Achterberg, María Algueró-Muñiz, Jessica Bellworthy, Jan Czerny, Mario Espósito, Mathias Haunost, Dana Hellemann, Andrea Ludwig, Jaw Chuen Yong, Maren Zark, Ulf Riebesell, Leif G. Anderson
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0009733

Benthic Composition of a Healthy Subtropical Reef: Baseline Species-Level Cover, with an Emphasis on Algae, in the Northwestern Hawaiian Islands
Cited by: 53
Author(s): Peter S. Vroom, Cristi L. Braun
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0247220

Microbial communities developing within bulk sediments under fish carcasses on a tidal flat
Cited by: 3
Author(s): Yasutake Kawamoto, Hiromi Kato, Yasunobu Nagata, Jotaro Urabe
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0111889

Differences in Life-Histories Refute Ecological Equivalence of Cryptic Species and Provide Clues to the Origin of Bathyal Halomonhystera (Nematoda)
Cited by: 24
Author(s): Jelle Van Campenhout, Sofie Derycke, Tom Moens, Ann Vanreusel
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0122268

Culicidae Community Composition and Temporal Dynamics in Guapiaçu Ecological Reserve, Cachoeiras de Macacu, Rio de Janeiro, Brazil
Cited by: 28
Author(s): Jerônimo Alencar, Cecília Ferreira de Mello, Anthony Érico Guimarães, Hélcio R. Gil-Santana, Júlia dos Santos Silva, J Mallet, Raquel M. Gleiser
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0232689

Effect of age and the individual on the gastrointestinal bacteriome of ponies fed a high-starch diet
Cited by: 5
Author(s): Philippa K. Morrison, C. J. Newbold, Eleanor Jones, Hilary J. Worgan, Dai Grove‐White, Alex Dugdale, Clare Barfoot, Patricia A. Harris, Caroline McG. Argo
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0031757

Population-Level Metrics of Trophic Structure Based on Stable Isotopes and Their Application to Invasion Ecology
Cited by: 292
Author(s): Michelle C. Jackson, Ian Donohue, Andrew L. Jackson, J. Robert Britton, David M. Harper, Jonathan Grey
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0060830

Which Environmental Factors Predict Seasonal Variation in the Coral Health of Acropora digitifera and Acropora spicifera at Ningaloo Reef?
Cited by: 13
Author(s): Saskia Hinrichs, Nicole L. Patten, Ming Feng, Daniel Strickland, Anya M. Waite
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0080536

Bleaching Susceptibility and Recovery of Colombian Caribbean Corals in Response to Water Current Exposure and Seasonal Upwelling
Cited by: 36
Author(s): Elisa Bayraktarov, Valeria Pizarro, Corvin Eidens, Thomas Wilke, Christian Wild
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0053742

Impacts on Coralligenous Outcrop Biodiversity of a Dramatic Coastal Storm
Cited by: 75
Author(s): Núria Teixidó, Edgar Casas, Emma Cebrián, Cristina Linares, Joaquim Garrabou
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0094111

Nitrate Reduction Functional Genes and Nitrate Reduction Potentials Persist in Deeper Estuarine Sediments. Why?
Cited by: 43
Author(s): Sokratis Papaspyrou, Cindy J. Smith, Lixin Dong, Corinne Whitby, Alex J. Dumbrell, David B. Nedwell
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0101701

Within-Otolith Variability in Chemical Fingerprints: Implications for Sampling Designs and Possible Environmental Interpretation
Cited by: 15
Author(s): Antonio Franco, Fabio Bulleri, Antonio Pennetta, Giuseppe E. De Benedetto, K.R. Clarke, Paolo Guidetti
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0051503

Functioning of a Shallow-Water Sediment System during Experimental Warming and Nutrient Enrichment
Cited by: 27
Author(s): Christian Alsterberg, Kristina Sundbäck, Stefan Hulth
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0222798

The negative effects of short-term extreme thermal events on the seagrass Posidonia oceanica are exacerbated by ammonium additions
Cited by: 30
Author(s): Yaiza Ontoria, Ainhoa Cuesta-Gracia, Juan Manuel García Ruiz, Javier Romero, Marta Pérez
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0047561

Global Change and Response of Coastal Dune Plants to the Combined Effects of Increased Sand Accretion (Burial) and Nutrient Availability
Cited by: 34
Author(s): Silvia Frosini, Claudio Lardicci, Elena Balestri
Software Mentions: 1
Published: almost 14 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292