Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.3389/fmicb.2019.01255
Diatom-Bacteria Interactions Modulate the Composition and Productivity of Benthic Diatom Biofilms
Cited by: 53
Author(s): Coco Koedooder, Willem Stock, Anne Willems, Sven Mangelinckx, Marleen De Troch, Wim Vyverman, Koen Sabbe
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2019.02345
Lactic Acid Treatment of Cereals and Dietary Phytase Modified Fecal Microbiome Composition Without Affecting Expression of Virulence Factor Genes in Growing Pigs
Cited by: 9
Author(s): Jutamat Klinsoda, Julia Vötterl, Qendrim Zebeli, Barbara U. Metzler‐Zebeli
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2018.02588
Exposure to Antibiotics Affects Saponin Immersion-Induced Immune Stimulation and Shift in Microbial Composition in Zebrafish Larvae
Cited by: 24
Author(s): Adrià López Nadal, David Peggs, G.F. Wiegertjes, Sylvia Brugman
Software Mentions: 1
Published: about 6 years ago
10.3390/nu11061345
Resistant Starch Is Actively Fermented by Infant Faecal Microbiota and Increases Microbial Diversity
Cited by: 21
Author(s): Geetha Gopalsamy, Elissa Mortimer, Paul Greenfield, Anthony R. Bird, Graeme P. Young, Claus T. Christophersen
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2018.02785
Extreme Geochemical Conditions and Dispersal Limitation Retard Primary Succession of Microbial Communities in Gold Tailings
Cited by: 6
Author(s): Talitha Santini, Maija Raudsepp, Jessica L. Hamilton, Jasmine Nunn
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2020.00367
Metatranscriptomic Profiling Reveals the Effect of Breed on Active Rumen Eukaryotic Composition in Beef Cattle With Varied Feed Efficiency
Cited by: 18
Author(s): Yawei Zhang, Fuyong Li, Yanhong Chen, Hao Wu, Qingxiang Meng, Le Luo Guan
Software Mentions: 1
Published: over 4 years ago
10.3390/plants8110445
Whey: The Soil Bio-Community Enhancer That Selectively Controls Root-Knot Nematodes
Cited by: 4
Author(s): Nikoletta Ntalli, Maria A. Tsiafouli, Kaliopi Tzani, Olga Mavridi, Chrisostomos Oplos, Urania Menkissoglu‐Spiroudi, Nikolaos Monokrousos
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2018.02730
K-Selection as Microbial Community Management Strategy: A Method for Improved Viability of Larvae in Aquaculture
Cited by: 75
Author(s): Ôlav Vadstein, Kari J.K. Attramadal, Ingrid Bakke, Yngvar Ôlsen
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2020.00746
Methanogens and Methanotrophs Show Nutrient-Dependent Community Assemblage Patterns Across Tropical Peatlands of the Pastaza-Marañón Basin, Peruvian Amazonia
Cited by: 25
Author(s): Damien Finn, Michal C Ziv-El, Joost van Haren, Jin Gyoon Park, Jhon del Aguila‐Pasquel, José David Urquiza Muñoz, Hinsby Cadillo‐Quiroz
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2020.00933
Fungal Diversity in the Neptune Forest: Comparison of the Mycobiota of Posidonia oceanica, Flabellia petiolata, and Padina pavonica
Cited by: 12
Author(s): A. Poli, Elena Bovio, Lucrezia Ranieri, Giovanna Cristina Varese, Valeria Prigione
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9101297
Intraspecific Variation in Nectar Chemistry and Its Implications for Insect Visitors: The Case of the Medicinal Plant, Polemonium Caeruleum L.
Cited by: 12
Author(s): Justyna Ryniewicz, Mateusz Skłodowski, Magdalena Chmur, Andrzej Bajguz, Katarzyna Roguz, Agata Roguz, Marcin Zych
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2019.02671
Seasonal Variation and Crop Sequences Shape the Structure of Bacterial Communities in Cysts of Soybean Cyst Nematode
Cited by: 13
Author(s): Weiming Hu, Noah Strom, Deepak Haarith, Senyu Chen, Kathryn E. Bushley
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2020.00370
Comparative Analysis of Rhizosphere Microbiomes of Southern Highbush Blueberry (Vaccinium corymbosum L.), Darrow’s Blueberry (V. darrowii Camp), and Rabbiteye Blueberry (V. virgatum Aiton)
Cited by: 21
Author(s): Jiangang Li, Olga V. Mavrodi, Jinfeng Hou, Chazden Blackmon, Ebrahiem M. Babiker, Dmitri V. Mavrodi
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2012.00444
Same, same but different: symbiotic bacterial associations in GBR sponges
Cited by: 44
Author(s): Nicole S. Webster, Heidi M. Luter, Rochelle M. Soo, Emmanuelle S. Botté, Rachel L. Simister, Dave Abdo, Steve W Whalan
Software Mentions: 1
Published: almost 12 years ago
10.3389/fmicb.2019.00889
The Effect of Disease and Season to Hepatopancreas and Intestinal Mycobiota of Litopenaeus vannamei
Cited by: 21
Author(s): Juan Li, Haiying Jiang, Linmiao Li, Xiujuan Zhang, Jinping Chen
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2016.02033
Insights into Broilers' Gut Microbiota Fed with Phosphorus, Calcium, and Phytase Supplemented Diets
Cited by: 79
Author(s): Daniel Borda-Molina, Marius Vital, Vera Sommerfeld, M. Rodehutscord, Amélia Camarinha‐Silva
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2021.656269
Temporal and Spatial Changes in Phyllosphere Microbiome of Acacia Trees Growing in Arid Environments
Cited by: 11
Author(s): Ashraf Al-Ashhab, Shiri Meshner, Rivka Alexander-Shani, Hana Dimerets, Michael Brandwein, Yael Bar-Lavan, Gidon Winters
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.617800
Caeca Microbial Variation in Broiler Chickens as a Result of Dietary Combinations Using Two Cereal Types, Supplementation of Crude Protein and Sodium Butyrate
Cited by: 8
Author(s): Daniel Borda-Molina, Gábor Mátis, Máté Mackei, Zsuzsanna Neogrády, Korinna Huber, Jana Seifert, Amélia Camarinha‐Silva
Software Mentions: 1
Published: almost 4 years ago
10.3390/plants9050640
Are Reproductive Traits Related to Pollen Limitation in Plants? A Case Study from a Central European Meadow
Cited by: 3
Author(s): Michael Bartoš, Štěpán Janeček, Petra Janečková, Eliška Chmelová, Robert Tropek, Lars Götzenberger, Yannick Klomberg, Jana Jersáková
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2019.02579
Distinct Coastal Microbiome Populations Associated With Autochthonous- and Allochthonous-Like Dissolved Organic Matter
Cited by: 12
Author(s): Elias Broman, Eero Asmala, Jacob Carstensen, Jarone Pinhassi, Mark Dopson
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2017.01486
Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly
Cited by: 8
Author(s): Jialiang Kuang, Marc W. Cadotte, Yongjian Chen, Haoyue Shu, Jun Liu, Lin-Xing Chen, Zheng-Shuang Hua, Wen‐Sheng Shu, Jizhong Zhou, Li-Nan Huang
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2021.685111
Impact of Soil Disinfestation on Fungal and Bacterial Communities in Soil With Cucumber Cultivation
Cited by: 2
Author(s): Yan Wang, Yujie Jin, Ping Han, Jianjun Hao, Hongyu Pan, Jinliang Liu
Software Mentions: 1
Published: over 3 years ago
10.3390/plants10030554
Metabolome-Wide, Phylogenetically Controlled Comparison Indicates Higher Phenolic Diversity in Tropical Tree Species
Cited by: 1
Author(s): Guille Peguero, Albert Gargallo‐Garriga, Joan Maspons, Karel Klem, Otmar Urban, Jordi Sardans, Josep Peñuelas
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2021.614501
Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.)
Cited by: 46
Author(s): Lioba Rüger, Kai Feng, Kenneth Dumack, Jule Freudenthal, Yan Chen, Run‐Cang Sun, Monica Wilson, Peng Yu, Bo Sun, Ye Deng, Frank Hochholdinger, Doris Vetterlein, Michael Bonkowski
Software Mentions: 1
Published: almost 4 years ago
10.1186/s40168-015-0129-y
A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses
Cited by: 49
Author(s): Thomas Weinmaier, Alexander J. Probst, Myron T. La Duc, Doina Ciobanu, Jan‐Fang Cheng, Natalia Ivanova, Thomas Rattei, Parag Vaishampayan
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2019.01252
Shotgun Metagenomics Reveals the Benthic Microbial Community Response to Plastic and Bioplastic in a Coastal Marine Environment
Cited by: 117
Author(s): Lee J. Pinnell, John Turner
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.721441
Different Amounts of Nitrogen Fertilizer Applications Alter the Bacterial Diversity and Community Structure in the Rhizosphere Soil of Sugarcane
Cited by: 11
Author(s): Yan Gu, Jihua Wang, Wei‐Jun Cai, Guoliang Li, Man Yu, Sen Yang
Software Mentions: 1
Published: about 3 years ago
10.3389/fmicb.2020.00161
Rhizosphere Microbial Community Structure Is Selected by Habitat but Not Plant Species in Two Tropical Seagrass Beds
Cited by: 28
Author(s): Xia Zhang, Changsui Zhao, Shengrui Yu, Zhijian Jiang, Songlin Liu, Yunchao Wu, Xiaoping Huang
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.00065
Combined Carbohydrates Support Rich Communities of Particle-Associated Marine Bacterioplankton
Cited by: 25
Author(s): Martin Sperling, Judith Piontek, Anja Engel, Karen Helen Wiltshire, Jutta Niggemann, Gunnar Gerdts, Antje Wichels
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2017.02073
Diets Alter the Gut Microbiome of Crocodile Lizards
Cited by: 64
Author(s): Haiying Jiang, Jinge Ma, Juan Li, Xiujuan Zhang, Linmiao Li, Nan He, Haiyang Liu, Shuyi Luo, Zhengjun Wu, Ri-Chou Han, Jinping Chen
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2018.00487
Host and Aquatic Environment Shape the Amphibian Skin Microbiome but Effects on Downstream Resistance to the Pathogen Batrachochytrium dendrobatidis Are Variable
Cited by: 56
Author(s): Andrea J. Jani, Cheryl J. Briggs
Software Mentions: 1
Published: over 6 years ago
10.3389/fmed.2021.655474
Gut Microbiota and Related Electronic Multisensorial System Changes in Subjects With Symptomatic Uncomplicated Diverticular Disease Undergoing Rifaximin Therapy
Cited by: 6
Author(s): Antonio De Vincentis, Marco Santonico, Federica Del Chierico, Annamaria Altomare, Benedetta Marigliano, Alice Laudisio, Sofia Reddel, Simone Grasso, Alessandro Zompanti, Giorgio Pennazza, Lorenza Putignani, Michele Pier Luca Guarino, Michele Cicala, Raffaele Antonelli Incalzi
Software Mentions: 1
Published: over 3 years ago
10.3390/plants10050942
Influence of Land Use on the C and N Status of a C4 Invasive Grass in a Semi-Arid Region: Implications for Biomonitoring
Cited by: 1
Author(s): Edison A. Díaz-Álvarez, Erick de la Barrera
Software Mentions: 1
Published: over 3 years ago
10.3389/fmed.2021.637246
Compare the Effect of Inhaled Corticosteroids and Systemic Corticosteroids on Sputum Microbiome of AECOPD
Cited by: 4
Author(s): Nan Ma, Yu-Jing Qi, Xiaona Liang, Jing Bai, Jingmin Deng, Meihua Li, He Zhou
Software Mentions: 1
Published: almost 4 years ago
10.3390/plants9020156
Community Structure, Diversity and Potential of Endophytic Bacteria in the Primitive New Zealand Medicinal Plant Pseudowintera colorata
Cited by: 16
Author(s): Neeraj Purushotham, E. Eirian Jones, Jana Monk, Hayley J. Ridgway
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmars.2020.566663
Energy Sources of the Depth-Generalist Mixotrophic Coral Stylophora pistillata
Cited by: 27
Author(s): Stephane Martinez, Yehoshua Kolodny, Eli Shemesh, Federica Scucchia, Reinat Nevo, Smadar Levin-Zaidman, Yossi Paltiel, Nir Keren, Dan Tchernov, Tali Mass
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2015.01507
(A)synchronous Availabilities of N and P Regulate the Activity and Structure of the Microbial Decomposer Community
Cited by: 16
Author(s): Nicolas Fanin, Stephan Hättenschwiler, Paola F. Chavez Soria, Nathalie Fromin
Software Mentions: 1
Published: almost 9 years ago
10.7717/peerj.5419
Long-term effects of competition and environmental drivers on the growth of the endangered coral <i>Mussismilia braziliensis</i> (Verril, 1867)
Cited by: 18
Author(s): Felipe Vitório Ribeiro, João A. Sá, Giovana O. Fistarol, Paulo S. Salomon, Renato Crespo Pereira, Maria Luiza A.M. Souza, Leonardo Mitrano Neves, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Leonardo T. Salgado, Alex Cardoso Bastos, Guilherme H. Pereira-Filho, Fernando C. Moraes, Rodrigo L. Moura
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.3587
The time-course of broiler intestinal microbiota development after administration of cecal contents to incubating eggs
Cited by: 60
Author(s): Erin E. Donaldson, Dragana Stanley, Robert J. Hughes, Robert J. Moore
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.479
Local domestication of lactic acid bacteria via cassava beer fermentation
Cited by: 32
Author(s): Alese M. Colehour, James F. Meadow, Melissa A. Liebert, Tara J Cepon-Robins, Theresa E. Gildner, Samuel S. Urlacher, Brendan J. M. Bohannan, J. Josh Snodgrass, Lawrence S. Sugiyama
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2019.02247
Seasonal Changes in Gut Microbiota Diversity and Composition in the Greater Horseshoe Bat
Cited by: 35
Author(s): Guohong Xiao, Sen Liu, Yanhong Xiao, Yue Zhu, Hanbo Zhao, Aoqiang Li, Zhongle Li, Feng Jiang
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.11095
Effects of the cranial parasite <i>Tylodelphys</i> sp. on the behavior and physiology of puye <i>Galaxias maculatus</i> (Jenyns, 1842)
Cited by: 1
Author(s): Ruby López-Rodríguez, Mario George-Nascimento, Konrad Górski
Software Mentions: 1
Published: over 3 years ago
10.3389/fnint.2021.719076
A Multivariate Assessment of Age-Related Cognitive Impairment in Octodon degus
Cited by: 7
Author(s): Daniela Rivera, Carolina B. Lindsay, Carolina A. Oliva, Francisco Bozinovic, Nibaldo C. Inestrosa
Software Mentions: 1
Published: over 3 years ago
10.3390/nu13093247
Modifications in the Intestinal Functionality, Morphology and Microbiome Following Intra-Amniotic Administration (Gallus gallus) of Grape (Vitis vinifera) Stilbenes (Resveratrol and Pterostilbene)
Cited by: 13
Author(s): Mariana Juste Contin Gomes, Nikolai Kolba, Nikita Agarwal, Dean Kim, Adi Eshel, Omry Koren, Elad Tako
Software Mentions: 1
Published: about 3 years ago
10.1128/mSystems.00323-20
Size Shapes the Active Microbiome of Methanogenic Granules, Corroborating a Biofilm Life Cycle
Cited by: 10
Author(s): Anna Christine Trego, S Murphy O'Sullivan, Christopher Quince, Simon Mills, Umer Zeeshan Ijaz, Gavin Collins
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2016.00129
High Molecular Weight Barley β-Glucan Alters Gut Microbiota Toward Reduced Cardiovascular Disease Risk
Cited by: 93
Author(s): Yanan Wang, Nancy Ames, Hein Min Tun, Susan M. Tosh, Peter J H Jones, Ehsan Khafipour
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2019.01952
Viral Infections Boost Prokaryotic Biomass Production and Organic C Cycling in Hadal Trench Sediments
Cited by: 18
Author(s): Elisabetta Manea, Antonio Dell’Anno, Eugenio Rastelli, Michael Tangherlini, Takuro Nunoura, Hidetaka Nomaki, Roberto Danovaro, Cinzia Corinaldesi
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2021.700570
Adalimumab Therapy Restores the Gut Microbiota in Patients With Ankylosing Spondylitis
Cited by: 14
Author(s): Zena Chen, Xuqi Zheng, Xinyu Wu, Jialing Wu, Xiaomin Li, Qiujing Wei, Xi Zhang, Lin Fang, Ou Jin, Gu J
Software Mentions: 1
Published: about 3 years ago
10.1128/mSystems.00465-20
Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Cited by: 6
Author(s): Bryn C. Taylor, Kelly C. Weldon, Ronald J. Ellis, Dean Franklin, Tobin Groth, Emily C. Gentry, Anupriya Tripathi, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Michelli F. Oliveira, Robert K. Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin D. Swafford, Pieter C. Dorrestein, Rob Knight
Software Mentions: 1
Published: about 4 years ago
10.3389/fimmu.2020.01654
Altered Microbiota, Impaired Quality of Life, Malabsorption, Infection, and Inflammation in CVID Patients With Diarrhoea
Cited by: 17
Author(s): Cornelia M. van Schewick, Christina Nöltner, Svenja Abel, Siobhan O. Burns, Sarita Workman, Andrew Symes, David Sánchez-Migallón Guzman, Michele Proietti, Alla Bulashevska, Fernando Moreira, Veronika Soetedjo, David M. Lowe, Bodo Grimbacher
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2020.00468
Fungal Dysbiosis and Intestinal Inflammation in Children With Beta-Cell Autoimmunity
Cited by: 31
Author(s): Jarno Honkanen, Arja Vuorela, Daniel Muthas, L. Orivuori, Kristiina Luopajärvi, Mysore V. Tejesvi, Anton Lavrinienko, Anna Maria Pirttilä, Christopher L. Fogarty, Taina Härkönen, Jorma Ilonen, Terhi Ruohtula, Mikael Knip, Janne J. Koskimäki, Outi Vaarala
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.4323
Inter-domain microbial diversity within the coral holobiont<i>Siderastrea siderea</i>from two depth habitats
Cited by: 19
Author(s): Guido Bonthond, Daniel G. Merselis, Katherine E. Dougan, T. G. Graff, W E C Todd, James W. Fourqurean, Mauricio Rodríguez-Lanetty
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.5485
Spatial and temporal shifts in the diet of the barnacle Amphibalanus eburneus within a subtropical estuary
Cited by: 3
Author(s): Christopher Freeman, Dean S. Janiak, Malcolm Mossop, Richard W. Osman, Valerie J. Paul
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2019.00666
Oral Administration of Compound Probiotics Improved Canine Feed Intake, Weight Gain, Immunity and Intestinal Microbiota
Cited by: 50
Author(s): Haiyan Xu, Weiqiang Huang, Qiangchuan Hou, Lai‐Yu Kwok, Wuri Laga, Yanjie Wang, Hongbing Ma, Zhihong Sun, Heping Zhang
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2020.01703
Microbiome and Metabolome Analyses Reveal the Disruption of Lipid Metabolism in Systemic Lupus Erythematosus
Cited by: 51
Author(s): Jingquan He, Tianlong Chan, Xiaoping Hong, Fengping Zheng, Chaowei Zhu, Yin Li, Weier Dai, Donge Tang, Dongzhou Liu, Yong Dai
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2019.00791
Global Metabolomic Characterizations of Microcystis spp. Highlights Clonal Diversity in Natural Bloom-Forming Populations and Expands Metabolite Structural Diversity
Cited by: 39
Author(s): Séverine Le Manach, Clément Duval, Arul Marie, Chakib Djédiat, Arnaud Catherine, Marc Edery, Cécile Bernard, Benjamin Marie
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2019.01437
Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum
Cited by: 29
Author(s): Richard Splivallo, Maryam Vahdatzadeh, Jose G. Maciá‐Vicente, Virginie Molinier, Martina Peter, Simon Egli, Stéphane Uroz, Francesco Paolocci, Aurélie Deveau
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2020.607609
Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk
Cited by: 5
Author(s): Fernanda Rosa, Katelin S. Matazel, Anne K. Bowlin, Keith D. Williams, Ahmed A. Elolimy, Sean H. Adams, Lars Bode, Laxmi Yeruva
Software Mentions: 1
Published: almost 4 years ago
10.3389/fimmu.2021.713485
Glycerol Monolaurate Ameliorated Intestinal Barrier and Immunity in Broilers by Regulating Intestinal Inflammation, Antioxidant Balance, and Intestinal Microbiota
Cited by: 19
Author(s): Linglian Kong, Zhenhua Wang, Chuanpi Xiao, Qidong Zhu, Zhigang Song
Software Mentions: 1
Published: about 3 years ago
10.3389/fimmu.2020.607754
Gut–Liver Immune Response and Gut Microbiota Profiling Reveal the Pathogenic Mechanisms of Vibrio harveyi in Pearl Gentian Grouper (Epinephelus lanceolatus♂ × E. fuscoguttatus♀)
Cited by: 31
Author(s): Yiqin Deng, Yaqiu Zhang, Haoxiang Chen, Li‐Wen Xu, Qian Wang, Feng Jiang
Software Mentions: 1
Published: about 4 years ago
10.3389/fimmu.2020.00200
Murine Gut Microbiome Association With APOE Alleles
Cited by: 34
Author(s): Ishita Parikh, Janice L. Estus, Diana J. Zajac, Manasi Malik, Juan Maldonado Weng, Leon M. Tai, George E. Chlipala, Mary Jo LaDu, Stefan J. Green, Steven Estus
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2018.01618
Fiber Supplements Derived From Sugarcane Stem, Wheat Dextrin and Psyllium Husk Have Different In Vitro Effects on the Human Gut Microbiota
Cited by: 24
Author(s): Hasinika K. A. H. Gamage, Sasha G. Tetu, Raymond W. W. Chong, Daniel Bucio-Noble, Carly P. Rosewarne, Liisa Kautto, Malcolm S. Ball, Mark P. Molloy, Nicolle H. Packer, Ian T. Paulsen
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2021.688886
Preservation of Gastrointestinal Mucosal Barrier Function and Microbiome in Patients With Controlled HIV Infection
Cited by: 6
Author(s): Gerald Mak, John Zaunders, Michelle Bailey, Nabila Seddiki, Geraint B. Rogers, Lex Leong, Tri Giang Phan, Anthony D. Kelleher, Kersten K. Koelsch, Mark Boyd, Mark Danta
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2013.00383
Restricted streptomycin use in apple orchards did not adversely alter the soil bacteria communities
Cited by: 26
Author(s): Fiona Walsh, Daniel P. Smith, Sarah M. Owens, Brion Duffy, Juerg E. Frey
Software Mentions: 1
Published: almost 11 years ago
10.7717/peerj.5057
Floating nurseries? Scyphozoan jellyfish, their food and their rich symbiotic fauna in a tropical estuary
Cited by: 3
Author(s): José M. Riascos, Willington Aguirre, Charlotte Hopfe, Diego Morales, Ángela Navarrete, José Tavera
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2020.02101
Intestinal Barrier Breakdown and Mucosal Microbiota Disturbance in Neuromyelitis Optical Spectrum Disorders
Cited by: 12
Author(s): Chun-Ping Chu, Sha Tan, Tao Li, Junli Gong, Yanyu Chang, Yuge Wang, Ping Fan, Dan He, Yiwen Ruan, Wei Qiu
Software Mentions: 1
Published: about 4 years ago
10.1128/mSystems.00528-20
Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV
Cited by: 1
Author(s): Bryn C. Taylor, Kelly C. Weldon, Ronald J. Ellis, Donald Franklin, Daniel McDonald, Gregory Humphrey, MacKenzie Bryant, Julia Toronczak, Tara Schwartz, Jennifer E. Iudicello, Robert K. Heaton, Igor Grant, Sara Gianella, Scott Letendre, Austin D. Swafford, Pieter C. Dorrestein, Rob Knight
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2017.00662
Bacterial Community Composition and Potential Driving Factors in Different Reef Habitats of the Spermonde Archipelago, Indonesia
Cited by: 12
Author(s): Hauke Kegler, Muhammad Lukman, Mirta Teichberg, Jeremiah Grahm Plass-Johnson, Christiane Hassenrück, Christian Wild, Astrid Gärdes
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2020.00696
Exploring the Potential of the Microbiome as a Marker of the Geographic Origin of Fresh Seafood
Cited by: 13
Author(s): Xiaoji Liu, Januana S. Teixeira, Saurabh Ner, V. Kassandra, Nicholas Petronella, Swapan Banerjee, Jennifer Ronholm
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.01426
Molecular Characterization of Arbuscular Mycorrhizal Fungi in an Agroforestry System Reveals the Predominance of Funneliformis spp. Associated with Colocasia esculenta and Pterocarpus officinalis Adult Trees and Seedlings
Cited by: 8
Author(s): Alexandre Geoffroy, Hervé Sanguin, Antoine Galiana, Amadou Bâ
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2021.669672
Trans Fatty Acid Intake Induces Intestinal Inflammation and Impaired Glucose Tolerance
Cited by: 18
Author(s): Tomio Okamura, Yoshitaka Hashimoto, Susumu Majima, Takafumi Senmaru, Emi Ushigome, Naoko Nakanishi, Mai Asano, Masahiro Yamazaki, Hiroshi Takakuwa, Michiaki Fukui
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.755481
Consumption of Butylated Starch Alleviates the Chronic Restraint Stress-Induced Neurobehavioral and Gut Barrier Deficits Through Reshaping the Gut Microbiota
Cited by: 22
Author(s): Peijun Tian, Huiyue Zhu, Xin Qian, Ying Chen, Zheng Wang, Jianxin Zhao, Hao Zhang, Gang Wang
Software Mentions: 1
Published: about 3 years ago
10.3389/fimmu.2020.599625
Host Defense Effectors Expressed by Hemocytes Shape the Bacterial Microbiota From the Scallop Hemolymph
Cited by: 7
Author(s): Roxana González, Ana Teresa Gonçalves, Rodrigo Rojas, Katherina Brokordt, Rafael Diego Rosa, Paulina Schmitt
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2017.01287
Oral Probiotics Alter Healthy Feline Respiratory Microbiota
Cited by: 24
Author(s): Aida I. Vientós‐Plotts, Aaron C. Ericsson, Hansjörg Rindt, Carol R. Reinero
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2021.621803
Effects of Vaccination Against Coccidiosis on Gut Microbiota and Immunity in Broiler Fed Bacitracin and Berry Pomace
Cited by: 7
Author(s): Quail Das, Julie Shay, Martin Gauthier, Yin X, Teri-Lyn Hasted, Kelly Ross, Carl Julien, Hassina Yacini, Yan Martel Kennes, Keith Warriner, Massimo F. Marcone, Moussa S. Diarra
Software Mentions: 1
Published: over 3 years ago
10.3389/fendo.2021.630526
The Impact of Gut Microbiome on Metabolic Disorders During Catch-Up Growth in Small-for-Gestational-Age
Cited by: 7
Author(s): Jie An, Junqi Wang, Li Guo, Xiao Ming Yuan, Wenli Lü, Lin Li, Lifen Chen, Xinqiong Wang, Zhiya Dong
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.00477
Diversity Profiling of Grapevine Microbial Endosphere and Antagonistic Potential of Endophytic Pseudomonas Against Grapevine Trunk Diseases
Cited by: 52
Author(s): Jennifer Niem, Regina Billones‐Baaijens, Benjamin Stodart, Sandra Savocchia
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2019.01763
Viral Regulation on Bacterial Community Impacted by Lysis-Lysogeny Switch: A Microcosm Experiment in Eutrophic Coastal Waters
Cited by: 21
Author(s): Xiaowei Chen, Ruijie Ma, Yongqiang Yang, Nianzhi Jiao, Rui Zhang
Software Mentions: 1
Published: over 5 years ago
10.3389/fendo.2021.662725
Clinical Manifestations of Polycystic Ovary Syndrome and Associations With the Vaginal Microbiome: A Cross-Sectional Based Exploratory Study
Cited by: 14
Author(s): Hong Xiang, Pengfei Qin, Jiechen Yin, Yong Shi, Xuan Yang, Zhengqi Chen, Xu Zhou, Hong Yu, Danhong Peng, Bei Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2019.00101
Phenylketonuria Diet Promotes Shifts in Firmicutes Populations
Cited by: 29
Author(s): G. Bassanini, Camilla Ceccarani, Francesca Borgo, Marco Severgnini, Valentina Rovelli, Giulia Morace, Elvira Verduci, Elisa Borghi
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2018.03066
Microbiomes of the Enteropneust, Saccoglossus bromophenolosus, and Associated Marine Intertidal Sediments of Cod Cove, Maine
Cited by: 5
Author(s): Gary M. King
Software Mentions: 1
Published: almost 6 years ago
10.1080/19490976.2020.1865708
Microbial and metabolic features associated with outcome of infliximab therapy in pediatric Crohn’s disease
Cited by: 48
Author(s): Yizhong Wang, Xuefeng Gao, Xinyue Zhang, Fangfei Xiao, Hui Hu, Xiaolu Li, Fajin Dong, Mingming Sun, Yunfeng Xiao, Ting Ge, Dan Li, Guangjun Yu, Zhanju Liu, Ting Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1080/19490976.2020.1866974
Role of gut microbiota in regulating gastrointestinal dysfunction and motor symptoms in a mouse model of Parkinson’s disease
Cited by: 49
Author(s): Yogesh Bhattarai, Jie Song, Meng Pu, Owen A. Ross, Pamela J. McLean, Lisa Till, William Moor, Madhusudan Grover, Karunya K. Kandimalla, Kara Gross Margolis, Gianrico Farrugia, Purna C. Kashyap
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2021.625581
Nasopharyngeal Microbiome Signature in COVID-19 Positive Patients: Can We Definitively Get a Role to Fusobacterium periodonticum?
Cited by: 48
Author(s): Carmela Nardelli, Ivan Gentile, Mario Setaro, Carmela Di Domenico, Biagio Pinchera, Antonio Riccardo Buonomo, Emanuela Zappulo, Riccardo Scotto, Giovanni Luca Scaglione, Giuseppe Castaldo, Ettore Capoluongo
Software Mentions: 1
Published: almost 4 years ago
10.1080/19490976.2021.1887721
Dietary vitamin K is remodeled by gut microbiota and influences community composition
Cited by: 52
Author(s): Jessie L Ellis, J Philip Karl, Angela M. Oliverio, Xueyan Fu, Jason W. Soares, Benjamin E. Wolfe, Christopher J. Hernandez, Joel B. Mason, Sarah L. Booth
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2019.00039
Frequency of Tongue Cleaning Impacts the Human Tongue Microbiome Composition and Enterosalivary Circulation of Nitrate
Cited by: 59
Author(s): Gena D. Tribble, Nikola Angelov, Robin Weltman, Bing-Yan Wang, Sridhar V. Eswaran, Isabel Gay, Kavitha Parthasarathy, Doan-Hieu V. Dao, Katherine N. Richardson, Nadia M. Ismail, Iraida Sharina, Embriette R. Hyde, Nadim J. Ajami, Joseph F. Petrosino, Nathan S. Bryan
Software Mentions: 1
Published: over 5 years ago
10.3389/fcimb.2018.00422
Establishment and Development of Oral Microflora in 12–24 Month-Old Toddlers Monitored by High-Throughput Sequencing
Cited by: 18
Author(s): Fĕi Li, Danying Tao, Xiping Feng, Chun Hung Chu, Hai‐Xia Lu
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.9564
Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia
Cited by: 9
Author(s): Somasundhari Shanmuganandam, Yiheng Hu, Tanja Strive, Robyn N. Hall
Software Mentions: 1
Published: over 4 years ago
10.3390/nu12040937
Randomised Double-Blind Placebo-Controlled Trial of Inulin with Metronidazole in Non-Alcoholic Fatty Liver Disease (NAFLD)
Cited by: 31
Author(s): Clara Yieh Lin Chong, David W. Orr, Lindsay D. Plank, Tommi Vatanen, Justin M. O’Sullivan, Rinki Murphy
Software Mentions: 1
Published: over 4 years ago
10.1080/19490976.2021.1908100
Development of gut microbiota and bifidobacterial communities of neonates in the first 6 weeks and their inheritance from mother
Cited by: 7
Author(s): Bo Yang, Mengfan Ding, Yingqi Chen, Fengzhen Han, Chun-yan Yang, Jianxin Zhao, Patrice Malard, Catherine Stanton, R. Paul Ross, Hao Zhang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2020.555508
Alterations in Urobiome in Patients With Bladder Cancer and Implications for Clinical Outcome: A Single-Institution Study
Cited by: 35
Author(s): Jiayi Zeng, Guihao Zhang, Chunxiao Chen, Kun Li, Yuehui Wen, Jie Zhao, Peng Wu
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2021.629438
Assessment of Oral Vancomycin-Induced Alterations in Gut Bacterial Microbiota and Metabolome of Healthy Men
Cited by: 7
Author(s): Andrew Hyoung Jin Kim, Yujin Lee, Eunwoo Kim, Sang Chun Ji, Jae Yong Chung, Joo Youn Cho
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2021.625589
Biliary Microbiota in Choledocholithiasis and Correlation With Duodenal Microbiota
Cited by: 12
Author(s): Jiahuai Han, Shuodong Wu, Ying Fan, Yu Tian, Jing Kong
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.3930
Bacterial and fungal communities respond differently to varying tillage depth in agricultural soils
Cited by: 37
Author(s): Craig Anderson, Michael H. Beare, Hannah L. Buckley, Gavin Lear
Software Mentions: 1
Published: about 7 years ago
10.3389/fcimb.2021.640309
Salivary Microbiota for Gastric Cancer Prediction: An Exploratory Study
Cited by: 31
Author(s): Kun Huang, Xuefeng Gao, Lili Wu, Bin Yan, Zikai Wang, Xiaomei Zhang, Lihua Peng, Jiu-fei Yu, Gang Sun, Yunsheng Yang
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2020.583761
Oral and Fecal Microbiome in Molar-Incisor Pattern Periodontitis
Cited by: 20
Author(s): Pâmela Pontes Penas Amado, Dione Kawamoto, Emmanuel Albuquerque‐Souza, Diego Castillo Franco, Luciana Saraiva, Renato Corrêa Viana Casarin, Anna Carolina Ratto Tempestini Horliana, Márcia Pinto Alves Mayer
Software Mentions: 1
Published: about 4 years ago
10.1080/19490976.2021.1930871
Inter-kingdom relationships in Crohn’s disease explored using a multi-omics approach
Cited by: 13
Author(s): Alessandra Frau, Umer Zeeshan Ijaz, Rachael Slater, Daisy Jonkers, John Penders, Barry J. Campbell, John Kenny, Neil Hall, Luca Lenzi, Michael D. Burkitt, Marieke Pierik, Alistair C. Darby, Chris Probert
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2021.636808
Changes in Microbial Community Composition Related to Sex and Colon Cancer by Nrf2 Knockout
Cited by: 7
Author(s): Chin Hee Song, Nayoung Kim, Ryoung Hee Nam, Soo In Choi, Jeong Eun Yu, Heewon Nho, Young Joon Surh
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2020.00402
Gut Dysbiosis in Chagas Disease. A Possible Link to the Pathogenesis
Cited by: 10
Author(s): Marcela de Souza-Basqueira, Roberto Marques Ribeiro, Léa Campos de Oliveira, Carlos Henrique Valente Moreira, Roberta Cristina Ruedas Martins, Diego Castillo Franco, Pâmela Pontes Penas Amado, Márcia Pinto Alves Mayer, Éster Cerdeira Sabino
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.6963
Dietary supplementation with probiotics regulates gut microbiota structure and function in Nile tilapia exposed to aluminum
Cited by: 38
Author(s): Leilei Yu, Nanzhen Qiao, Tianqi Li, Renqiang Yu, Qixiao Zhai, Fengwei Tian, Hao Zhang, Wei Chen
Software Mentions: 1
Published: over 5 years ago