cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0158785

Density of Key-Species Determines Efficiency of Macroalgae Detritus Uptake by Intertidal Benthic Communities
Cited by: 15
Author(s): Agnes M. L. Karlson, Clarisse Niemand, Candida Savage, Conrad A. Pilditch
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.2323

Positive and negative effects of mesograzers on early‐colonizing species in an intertidal rocky‐shore community
Cited by: 20
Author(s): Daniela Tejada-Martínez, Daniela N. López, César C. Bonta, Roger D. Sepúlveda, Nelson Valdivia
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-018-1619-z

Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women
Cited by: 72
Author(s): José O. Alemán, Nicholas A. Bokulich, Jonathan R. Swann, Joseph R. Walker, Joel Correa de Rosa, Thomas Battaglia, Adele Costabile, Alexandros Pechlivanis, Yupu Liang, Jan L. Breslow, Martin J. Blaser, Peter R. Holt
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0142681

Effects of Seasonal Upwelling on Inorganic and Organic Matter Dynamics in the Water Column of Eastern Pacific Coral Reefs
Cited by: 16
Author(s): Ines Stuhldreier, Celeste Sánchez-Noguera, Tim Rixen, Jorge Cortés, Álvaro Morales, Christian Wild
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0198860

The spread of Kalmia angustifolia on black spruce forest cutovers contributes to the spatial heterogeneity of soil resources
Cited by: 4
Author(s): Gilles Joanisse, Robert L. Bradley, Caroline M. Preston
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.4991

Small mammal herbivores mediate the effects of soil nitrogen and invertebrate herbivores on grassland diversity
Cited by: 10
Author(s): Nicole Poe, Katharine L. Stuble, Lara Souza
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13059-020-02209-7

Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome
Cited by: 9
Author(s): Emma K. Accorsi, Eric A. Franzosa, Tiffany Y. Hsu, Regina Joice Cordy, Ayala Maayan-Metzger, Hanaa Jaber, Aylana Reiss-Mandel, Madeleine Kline, Casey DuLong, Marc Lipsitch, Gili Regev‐Yochay, Curtis Huttenhower
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0210203

Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves
Cited by: 15
Author(s): Raies A. Mir, Michael D. Kleinhenz, Heather K. Allen, Indira T. Kudva
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.568224

Exopolysaccharide Features Influence Growth Success in Biocrust-forming Cyanobacteria, Moving From Liquid Culture to Sand Microcosms
Cited by: 19
Author(s): Sonia Chamizo, Alessandra Adessi, Giuseppe Torzillo, Roberto De Philippis
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0233189

Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific
Cited by: 17
Author(s): Junya Hirai, Aiko Tachibana, Atsushi Tsuda
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.4474

Large-scale molecular diet analysis in a generalist marine mammal reveals male preference for prey of conservation concern
Cited by: 29
Author(s): Dietmar Schwarz, Sara M. Spitzer, Austen C. Thomas, Christa M. Kohnert, Theresa R. Keates, Alejandro Acevedo‐Gutiérrez
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.00438

Dysbiosis of Skin Microbiota in Psoriatic Patients: Co-occurrence of Fungal and Bacterial Communities
Cited by: 70
Author(s): Zuzana Stehlíková, Martin Kostovčík, Klara Kostovcikova, Miloslav Kverka, Kateřina Jůzlová, Filip Rob, Jana Hercogová, P. Boháč, Yishay Pinto, Atara Uzan, Omry Koren, Helena Tlaskalová‐Hogenová, Zuzana Jirásková Zákostelská
Software Mentions: 1
Published: over 5 years ago

10.1101/2020.11.19.20234229

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment
Cited by: 12
Author(s): Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrel, Lingjing Jiang, Cameron Martino, Rachel E. Diner, Gibraan Rahman, Daniel McDonald, George E. Armstrong, Sho M. Kodera, S. De Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana Salas Garcia, Leslie Chiang, Rodolfo A. Salido, Justin P. Shaffer, MacKenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L. Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J. Torriani, Rob Knight, Jack A. Gilbert, Daniel A. Sweeney, Sarah Allard
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2018.03017

The Equine Gastrointestinal Microbiome: Impacts of Age and Obesity
Cited by: 42
Author(s): Philippa K. Morrison, C. J. Newbold, Eleanor Jones, Hilary J. Worgan, Dai Grove‐White, Alex Dugdale, Clare Barfoot, Patricia A. Harris, Caroline McG. Argo
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13073-016-0299-7

An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis
Cited by: 528
Author(s): Jun Chen, Kerry Wright, John M. Davis, Patricio Jeraldo, Eric Marietta, Joseph A. Murray, Heidi Nelson, Eric L. Matteson, Veena Taneja
Software Mentions: 1
Published: over 8 years ago

10.1016/j.humic.2019.100069

Gut microbiome composition and diversity are related to human personality traits
Cited by: 104
Author(s): Katerina V.‐A. Johnson
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pntd.0005975

A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children
Cited by: 49
Author(s): Susannah J. Salter, Claudia Turner, Wanitda Watthanaworawit, Marcus C. de Goffau, Josef Wagner, Julian Parkhill, Stephen D. Bentley, David Green, François Nosten, Paul Turner
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0187935

Contrasts in the marine ecosystem of two Macaronesian islands: A comparison between the remote Selvagens Reserve and Madeira Island
Cited by: 25
Author(s): Alan M. Friedlander, Enric Ballesteros, Sabrina Clemente, Emanuel João Gonçalves, Andy Estep, Paul Rose, Enric Sala
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0139848

Community Structure and Function of Amphibian Skin Microbes: An Experiment with Bullfrogs Exposed to a Chytrid Fungus
Cited by: 73
Author(s): Jenifer B. Walke, Matthew H. Becker, Stephen C. Loftus, Leanna House, Thais L. Teotonio, Kevin P. C. Minbiole, Lisa K. Belden
Software Mentions: 1
Published: about 9 years ago

10.1186/s13073-016-0357-1

Altered gut microbiota in female mice with persistent low body weights following removal of post-weaning chronic dietary restriction
Cited by: 19
Author(s): Jun Chen, Yoshitaka Toyomasu, Yujiro Hayashi, David R. Linden, Joseph H. Szurszewski, Heidi Nelson, Gianrico Farrugia, Purna C. Kashyap, Nicholas Chia, Tamás Ördög
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2015.01142

Pyrosequencing of the bacteria associated with Platygyra carnosus corals with skeletal growth anomalies reveals differences in bacterial community composition in apparently healthy and diseased tissues
Cited by: 19
Author(s): Jenny C.Y. Ng, Yuen-Yan Chan, Hein Min Tun, Fung Ping Leung, Paul K.S. Shin, Joanne Wing Yan Chiu
Software Mentions: 1
Published: about 9 years ago

10.1038/ismej.2016.109

Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time
Cited by: 108
Author(s): Nina Dombrowski, Klaus Schlaeppi, Matthew T. Agler, Stéphane Hacquard, Eric Kemen, Ruben Garrido‐Oter, Jörg Wunder, George Coupland, Paul Schulze‐Lefert
Software Mentions: 1
Published: over 8 years ago

10.1186/s13073-018-0580-z

T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency
Cited by: 27
Author(s): Erik L. Clarke, Andrew Jesse Connell, Emmanuelle Six, Nadia A. Kadry, Arwa Abbas, Young Sun Hwang, J.K. Everett, Casey E. Hofstaedter, Rebecca Marsh, Myriam Armant, Judith R. Kelsen, Luigi D. Notarangelo, Ronald G. Collman, Salima Hacein‐Bey‐Abina, Donald B. Kohn, Marina Cavazzana, Alain Fischer, David A. Williams, Sung-Yun Pai, Frederic D. Bushman
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0002453

Microarray Analysis of Microbiota of Gingival Lesions in Noma Patients
Cited by: 28
Author(s): Antoine Huyghe, Patrice François, Andrea Mombelli, Manuela Tangomo, Myriam Girard, Denise Baratti-Mayer, Ignacio Bolívar, Didier Pittet, Jacques Schrenzel
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2018.02627

Altered Gut Microbiota in Myasthenia Gravis
Cited by: 37
Author(s): Dongxu Qiu, Zhiwei Xia, Jiangjian Xiao, Jun Deng, Lei Zhang, Jing Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s13073-020-00765-y

Strain-level epidemiology of microbial communities and the human microbiome
Cited by: 65
Author(s): Yan Yan, Long H. Nguyen, Eric A. Franzosa, Curtis Huttenhower
Software Mentions: 1
Published: over 4 years ago

10.1186/s13073-021-00840-y

Guild-based analysis for understanding gut microbiome in human health and diseases
Cited by: 71
Author(s): Guojun Wu, Naisi Zhao, Chenhong Zhang, Yan Y. Lam, Liping Zhao
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pntd.0008531

Dengue infection modulates locomotion and host seeking in Aedes aegypti
Cited by: 28
Author(s): Anaïs Karine Tallon, Marcelo G. Lorenzo, Luciano Andrade Moreira, Luís Eduardo Martinez Villegas, Sharon R. Hill, Rickard Ignell
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0080137

Modelling Coral Reef Futures to Inform Management: Can Reducing Local-Scale Stressors Conserve Reefs under Climate Change?
Cited by: 51
Author(s): Georgina G. Gurney, Jess Melbourne-Thomas, Rollan C. Geronimo, P. M. Aliño, Craig R. Johnson
Software Mentions: 1
Published: about 11 years ago

10.1155/2020/2375676

Gut Bacteria Selectively Altered by Sennoside A Alleviate Type 2 Diabetes and Obesity Traits
Cited by: 21
Author(s): Zhonghong Wei, Pengfei Shen, Cheng Peng, Yin Lu, Aiyun Wang, Zilin Sun
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.5802

Combined effects of global climate change and nutrient enrichment on the physiology of three temperate maerl species
Cited by: 16
Author(s): Zujaila Nohemy Qui-Minet, Jérôme Coudret, Dominique Davoult, Jacques Grall, Miguel Méndez Sandín, Thierry Cariou, Sophie Martin
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41396-020-00822-9

Plant resistome profiling in evolutionary old bog vegetation provides new clues to understand emergence of multi-resistance
Cited by: 29
Author(s): Melanie M. Obermeier, Wisnu Adi Wicaksono, Julian Taffner, Alessandro Bergna, Anja Poehlein, Tomislav Cernava, Stefanie Lindstaedt, Mario Lovrić, Christina A. Müller Bogotá, Gabriele Berg
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0059959

Fish Assemblages Associated with Natural and Anthropogenically-Modified Habitats in a Marine Embayment: Comparison of Baited Videos and Opera-House Traps
Cited by: 31
Author(s): Corey B. Wakefield, Paul D. Lewis, Teresa B. Coutts, David V. Fairclough, Timothy J. Langlois
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2017.01325

Fertilization Shapes Bacterial Community Structure by Alteration of Soil pH
Cited by: 137
Author(s): Yuting Zhang, Hong Shen, Xinhua He, Ben W. Thomas, Newton Z. Lupwayi, Xiying Hao, Matthew C. Thomas, Xiaojun Shi
Software Mentions: 1
Published: over 7 years ago

10.3390/nu12061705

The High-Fat Diet Based on Extra-Virgin Olive Oil Causes Dysbiosis Linked to Colorectal Cancer Prevention
Cited by: 19
Author(s): Carmen Rodríguez-García, Cristina Sánchez-Quesada, Ignacio Algarra, José J. Gaforio
Software Mentions: 1
Published: over 4 years ago

10.1080/20002297.2020.1832837

Oral dysbiosis induced by Porphyromonas gingivalis is strain-dependent in mice
Cited by: 14
Author(s): Émile Boyer, Patricia Leroyer, Ludivine Malherbe, Shao Bing Fong, Olivier Loréal, Martine Bonnaure‐Mallet, Vincent Meuric
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pcbi.1005300

Glycoside Hydrolases across Environmental Microbial Communities
Cited by: 76
Author(s): Renaud Berlemont, Adam C. Martiny
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41396-019-0500-2

Consequences of microbial diversity in forest nitrogen cycling: diverse ammonifiers and specialized ammonia oxidizers
Cited by: 52
Author(s): Kazuo Isobe, Yuta Ise, Hiroyu Kato, Takayuki Oda, Christian E. Vincenot, Keisuke Koba, Ryunosuke Tateno, Keishi Senoo, Nobuhito Ohte
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00317

Assessing the Influence of Vegan, Vegetarian and Omnivore Oriented Westernized Dietary Styles on Human Gut Microbiota: A Cross Sectional Study
Cited by: 73
Author(s): Carmen Losasso, Ester M. Eckert, Eleonora Mastrorilli, Jörg Villiger, Marzia Mancin, Ilaria Patuzzi, Andrea Di Cesare, Veronica Cibin, Federica Barrucci, Jakob Pernthaler, Gianluca Corno, Antonia Ricci
Software Mentions: 1
Published: over 6 years ago

10.1007/s11357-021-00375-5

Maternal stress programs a demasculinization of glutamatergic transmission in stress-related brain regions of aged rats
Cited by: 5
Author(s): Rémy Verhaeghe, Vance D. Gao, Sara Morley‐Fletcher, Hammou Bouwalerh, Gilles Van Camp, Francesca Cisani, Ferdinando Nicoletti, Stefania Maccari
Software Mentions: 1
Published: over 3 years ago

10.1515/biol-2021-0024

The impact of sewage sludge on the fungal communities in the rhizosphere and roots of barley and on barley yield
Cited by: 1
Author(s): Katarína Ondreičková, Michaela Piliarová, Lenka Klčová, Alžběta Žofajová, Jozef Gubiš, Miroslav Horník, Marcela Gubišová, Martina Hudcovicová, Ján Kraic
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms9051032

Effects of a Bioprocessed Soybean Meal Ingredient on the Intestinal Microbiota of Hybrid Striped Bass, Morone chrysops x M. saxatilis
Cited by: 6
Author(s): Emily Fowler, Prakash Poudel, Brandon M. White, Benoit St‐Pierre, Michael L. Brown
Software Mentions: 1
Published: over 3 years ago

10.1093/gigascience/gix050

Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients
Cited by: 57
Author(s): Qing-Yu He, Yuan Gao, Zhuye Jie, Xinlei Yu, Janne Marie Laursen, Liang Xiao, Ying Liu, Lingling Li, Faming Zhang, Qiang Feng, Xiaoping Li, Jinghong Yu, Chuan Liu, Ping Lan, Ting Yan, Xin Liu, Xun Xu, Huanming Yang, Jian Wang, Lise Madsen, Susanne Brix, Jianping Wang, Karsten Kristiansen, Huijue Jia
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/1241894

Melatonin Alleviates Neuroinflammation and Metabolic Disorder in DSS-Induced Depression Rats
Cited by: 49
Author(s): Weijie Lv, Cui Liu, Linzeng Yu, Jiahao Zhou, Yue Li, Ying Xiong, Ao Guo, Limin Chao, Qian Qu, Wei Guang-wei, Xinggang Tang, Yulong Yin, Shining Guo
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1008913

A statistical model for describing and simulating microbial community profiles
Cited by: 19
Author(s): Siyuan Ma, Boyu Ren, Himel Mallick, Yo Sup Moon, Emma Schwager, Sagun Maharjan, Timothy L. Tickle, Yiren Lu, Rachel N. Carmody, Eric A. Franzosa, Lucas Janson, Curtis Huttenhower
Software Mentions: 1
Published: about 3 years ago

10.1093/gigascience/gix089

Taxonomic structure and functional association of foxtail millet root microbiome
Cited by: 147
Author(s): Tao Jin, Yayu Wang, Huang Yue-ying, Jin Xu, Pengfan Zhang, Nian Wang, Xin Liu, Haiyan Chu, Guang Liu, Honggang Jiang, Yuzhen Li, Jing Xu, Karsten Kristiansen, Liang Xiao, Yunzeng Zhang, Gengyun Zhang, Guohua Du, Houbao Zhang, Hong-Feng Zou, Haifeng Zhang, Zhuye Jie, Suisha Liang, Huijue Jia, Jingwang Wan, Dechun Lin, Jinying Li, Guangyi Fan, Huanming Yang, Jian Wang, Yang Bai, Xun Xu
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.00196

Variable Colonization after Reciprocal Fecal Microbiota Transfer between Mice with Low and High Richness Microbiota
Cited by: 51
Author(s): Aaron C. Ericsson, Alexa R. Personett, Giedre Turner, Rebecca A. Dorfmeyer, Craig L. Franklin
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41396-020-00836-3

Bacterial microbiota similarity between predators and prey in a blue tit trophic network
Cited by: 14
Author(s): Hélène Dion-Phénix, Anne Charmantier, Christophe de Franceschi, Geneviève Bourret, Steven W. Kembel, Denis Réale
Software Mentions: 1
Published: almost 4 years ago

10.1002/ece3.6777

Sweet tooth: Elephants detect fruit sugar levels based on scent alone
Cited by: 16
Author(s): Omer Nevo, Melissa H. Schmitt, Manfred Ayasse, Kim Valenta
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pbio.3000788

Glycan cross-feeding supports mutualism between Fusobacterium and the vaginal microbiota
Cited by: 28
Author(s): Kavita Agarwal, Linda J. Robinson, Somya Aggarwal, Lynne Foster, Ariel Hernandez-Leyva, Hueylie Lin, Brett A. Tortelli, Valerie P. O’Brien, Liza Miller, Andrew L. Kau, Hilary Reno, Nicole M. Gilbert, Warren G. Lewis, Amanda L. Lewis
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.4339

The effect of habitat fragmentation on the bee visitor assemblages of three Australian tropical rainforest tree species
Cited by: 17
Author(s): Tobias J. Smith, Margaret M. Mayfield
Software Mentions: 1
Published: over 6 years ago

10.1111/geb.12783

Traditional plant functional groups explain variation in economic but not size‐related traits across the tundra biome
Cited by: 45
Author(s): Haydn J. D. Thomas, Isla H. Myers‐Smith, Anne D. Bjorkman, Sarah C. Elmendorf, Daan Blok, Johannes H. C. Cornelissen, Bruce C. Forbes, Robert D. Hollister, Signe Normand, Janet S. Prevéy, Christian Rixen, Gabriela Schaepman‐Strub, Martin Wilmking, Sonja Wipf, William K. Cornwell, Jens Kattge, Scott J. Goetz, Kevin C. Guay, Juha M. Alatalo, Alba Anadon‐Rosell, Sandra Angers‐Blondin, L. T. Berner, Robert G. Björk, Agata Buchwał, Allan Buras, Michele Carbognani, Katie Christie, Laura Siegwart Collier, Elisabeth J. Cooper, Anu Eskelinen, Esther R. Frei, Oriol Grau, Paul Grogan, Martin Hallinger, M.M.P.D. Heijmans, Luise Hermanutz, James M. Hudson, Karl Hülber, Maitane Iturrate‐Garcia, Colleen M. Iversen, Francesca Jaroszynska, Jill F. Johnstone, Elina Kaarlejärvi, Aino Kulonen, Laurent J. Lamarque, Esther Lévesque, Chelsea J. Little, Anders Michelsen, Ann Milbau, Jacob Nabe‐Nielsen, Sigrid Schøler Nielsen, Josep M. Ninot, Steven F. Oberbauer, Johan Olofsson, В. Г. Онипченко, Alessandro Petraglia, Sabine B. Rumpf, Philipp Semenchuk, Nadejda A. Soudzilovskaia, Marko J. Spasojevic, James D. M. Speed, Ken D. Tape, Mariska te Beest, Marcello Tomaselli, Andrew J. Trant, Urs A. Treier, Susanna Venn, Tage Vowles, Stef Weijers, Tara Zamin, Owen K. Atkin, Michael Bahn, Benjamin Blonder, Giandiego Campetella, Bruno E. L. Cerabolini, F. Stuart Chapin, Matteo Dainese, Franciska T. de Vries, Sandra Dı́az, W. Green, Robert B. Jackson, Peter Manning, Ülo Niinemets, Wim A. Ozinga, Josep Peñuelas, Peter B. Reich, Brandon S. Schamp, Serge Sheremetiev, Peter M. van Bodegom
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0152751

Gut Microbiome Developmental Patterns in Early Life of Preterm Infants: Impacts of Feeding and Gender
Cited by: 168
Author(s): Xiaomei Cong, Wanli Xu, Susan Janton, Wendy A. Henderson, Adam Matson, Jacqueline M. McGrath, Kendra Maas, Joerg Graf
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.01016

The Composition and Function of Microbiomes Within Microcystis Colonies Are Significantly Different Than Native Bacterial Assemblages in Two North American Lakes
Cited by: 35
Author(s): Jennifer G. Jankowiak, Christopher J. Gobler
Software Mentions: 1
Published: over 4 years ago

10.1080/19490976.2020.1785251

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients
Cited by: 52
Author(s): Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E. Fouts, Bernd Schnabl
Software Mentions: 1
Published: over 4 years ago

10.1080/19490976.2020.1758290

The protective effect of Bifidobacterium bifidum G9-1 against mucus degradation by Akkermansia muciniphila following small intestine injury caused by a proton pump inhibitor and aspirin
Cited by: 38
Author(s): Tsutomu Yoshihara, Yosuke Oikawa, Takayuki Kato, Takaomi Kessoku, Takashi Kobayashi, Shingo Kato, Noboru Misawa, Keiichi Ashikari, Akiko Fuyuki, Hidenori Ohkubo, Takuma Higurashi, Yoko Tateishi, Yoshiki Tanaka, Shunji Nakajima, Hiroshi Ohno, Koichiro Wada, Atsushi Nakajima
Software Mentions: 1
Published: over 4 years ago

10.1080/19490976.2020.1830694

Characterization of the intestinal microbiota during Citrobacter rodentium infection in a mouse model of infection-triggered Parkinson’s disease
Cited by: 11
Author(s): Tyler Cannon, Anshul Sinha, Louis-Éric Trudeau, Corinne F. Maurice, Samantha Gruenheid
Software Mentions: 1
Published: about 4 years ago

10.1080/19490976.2020.1826747

Influence of probiotic supplementation on the developing microbiota in human preterm neonates
Cited by: 24
Author(s): Niels van Best, Sonja Trepels-Kottek, Paul H. M. Savelkoul, Thorsten Orlikowsky, Mathias W. Hornef, John Penders
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2021.610080

Colonization of Supplemented Bifidobacterium breve M-16V in Low Birth Weight Infants and Its Effects on Their Gut Microbiota Weeks Post-administration
Cited by: 10
Author(s): Ayako Horigome, Ken Hisata, Toshitaka Odamaki, Noriyuki Iwabuchi, Jin‐zhong Xiao, Toshiaki Shimizu
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms221910616

Monocarboxylate Transporter-2 Expression Restricts Tumor Growth in a Murine Model of Lung Cancer: A Multi-Omic Analysis
Cited by: 2
Author(s): Abdelnaby Khalyfa, Zhuanhong Qiao, Murugesan Raju, Chi‐Ren Shyu, Lyndon M. Coghill, Aaron C. Ericsson, David Gozal
Software Mentions: 1
Published: about 3 years ago

10.1080/19490976.2020.1840766

Host miRNA-21 promotes liver dysfunction by targeting small intestinal Lactobacillus in mice
Cited by: 22
Author(s): Andrea M. Santos, Marta B. Afonso, Ricardo S. Ramiro, David Pires, Madalena Pimentel, Rui E. Castro, Cecília M. P. Rodrigues
Software Mentions: 1
Published: about 4 years ago

10.1186/s12937-018-0331-4

High phosphorus intake and gut-related parameters – results of a randomized placebo-controlled human intervention study
Cited by: 28
Author(s): Ulrike Trautvetter, Amélia Camarinha‐Silva, Gerhard Jahreis, Stefan Lorkowski, Michael Glei
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu12030631

Effect of Caloric Restriction on BMI, Gut Microbiota, and Blood Amino Acid Levels in Non-Obese Adults
Cited by: 34
Author(s): Huajie Zou, Dan Wang, Huahui Ren, Kaiye Cai, Peishan Chen, Chao Fang, Zhun Shi, Pengfan Zhang, Jian Wang, Huanming Yang, Zhong Huang
Software Mentions: 1
Published: almost 5 years ago

10.1093/ofid/ofy289

Effect of Commonly Used Pediatric Antibiotics on Gut Microbial Diversity in Preschool Children in Burkina Faso: A Randomized Clinical Trial
Cited by: 36
Author(s): Catherine E. Oldenburg, Ali Siè, Boubacar Coulibaly, Lucienne Ouermi, Clarisse Dah, Charlemagne Tapsoba, Till Bärnighausen, Kathryn J. Ray, Lina Zhong, Susie Cummings, Elodie Lebas, Thomas M. Lietman, Jeremy D. Keenan, Thuy Doan
Software Mentions: 1
Published: about 6 years ago

10.1002/ece3.4555

Habitat effects on intra-species variation in functional morphology: Evidence from freshwater fish
Cited by: 23
Author(s): Fangmin Shuai, Shixiao Yu, Sovan Lek, Xinhui Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2016.00905

An Integrated Multi-Omics Approach Reveals the Effects of Supplementing Grass or Grass Hay with Vitamin E on the Rumen Microbiome and Its Function
Cited by: 18
Author(s): Alejandro Belanche, Alison H. Kingston‐Smith, C. J. Newbold
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.01085

Acclimation and Institutionalization of the Mouse Microbiota Following Transportation
Cited by: 50
Author(s): Daniel Montonye, Aaron C. Ericsson, Susheel Bhanu Busi, Cathleen Lutz, Keegan Wardwell, Craig L. Franklin
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.01677

Effects of Zinc Pollution and Compost Amendment on the Root Microbiome of a Metal Tolerant Poplar Clone
Cited by: 35
Author(s): Francesco Guarino, Giovanni Improta, Maria Triassi, Angela Cicatelli, Stefano Castiglione
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-017-08427-7

Effects of latitude and depth on the beta diversity of New Zealand fish communities
Cited by: 26
Author(s): Vincent Zintzen, Marti J. Anderson, Clive D. Roberts, Euan S. Harvey, Andrew L. Stewart
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms9091909

Assessing the Risks of Potential Bacterial Pathogens Attaching to Different Microplastics during the Summer–Autumn Period in a Mariculture Cage
Cited by: 20
Author(s): Dandi Hou, Man Hong, Yanting Wang, Pengsheng Dong, Huangwei Cheng, Huizhen Yan, Zhiyuan Yao, Daoji Li, Kai Wang, Demin Zhang
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2018.00424

Close Link Between Harmful Cyanobacterial Dominance and Associated Bacterioplankton in a Tropical Eutrophic Reservoir
Cited by: 33
Author(s): Iamê Alves Guedes, Caio T. C. C. Rachid, Luciana M. Rangel, Lúcia Helena Sampaio da Silva, Paulo Mascarello Bisch, Sandra M.F.O. Azevedo, Amílcar Pacheco
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22095005

A Tryptophan-Deficient Diet Induces Gut Microbiota Dysbiosis and Increases Systemic Inflammation in Aged Mice
Cited by: 30
Author(s): Ibrahim Yusufu, Kai Ding, Kathryn E. Smith, Umesh D. Wankhade, Bikash Sahay, Gregory Taylor Patterson, Rafał Pacholczyk, Satish Adusumilli, Mark W. Hamrick, William Hill, Carlos M. Isales, Sadanand Fulzele
Software Mentions: 1
Published: over 3 years ago

10.1002/ece3.5570

Epibenthic predators control mobile macrofauna associated with a foundation species in a subarctic subtidal community
Cited by: 3
Author(s): Eugeniy Yakovis, Anna Artemieva
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-09281-3

Fungal community assemblage of different soil compartments in mangrove ecosystem
Cited by: 30
Author(s): Dinesh Sanka Loganathachetti, Anbu Poosakkannu, Muthuraman Sundararaman
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-08161-0

A biomechanical approach to understand the ecomorphological relationship between primate mandibles and diet
Cited by: 22
Author(s): Jordi Marcè-Nogué, Thomas A. Püschel, Thomas M. Kaiser
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00012

Plants Assemble Species Specific Bacterial Communities from Common Core Taxa in Three Arcto-Alpine Climate Zones
Cited by: 37
Author(s): Manoj Kumar, Guenter Brader, Angela Sessitsch, Anita Mäki, Jan Dirk van Elsas, Riitta Nissinen
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-10494-9

Temporal Stability and Composition of the Ocular Surface Microbiome
Cited by: 152
Author(s): Jerome Ozkan, Shaun Nielsen, Cristina Díez‐Vives, Minas T. Coroneo, Torsten Thomas, Mark Willcox
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09844-4

Comparison of vaginal microbiota sampling techniques: cytobrush versus swab
Cited by: 21
Author(s): Anita Mitra, David A. MacIntyre, Vishakha Mahajan, Yun Sok Lee, Ann Smith, Julian R. Marchesi, Deirdre Lyons, Phillip R. Bennett, Maria Kyrgiou
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.00415

Comparison of Bacterial DNA Profiles in Mid-Trimester Amniotic Fluid Samples From Preterm and Term Deliveries
Cited by: 27
Author(s): Lisa F. Stinson, Maria Hallingström, Malin Barman, Felicia Viklund, Jeffrey A. Keelan, Marian Kacerovský, Matthew S. Payne, Bo Jacobsson
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-017-10231-2

Microbial communities in marine sediments modify success of an invasive macrophyte
Cited by: 32
Author(s): Paul E. Gribben, Shaun Nielsen, Justin R. Seymour, Daniel Bradley, Matthew N. West, Torsten Thomas
Software Mentions: 1
Published: over 7 years ago

10.1038/s41396-020-0732-1

Fungal communities decline with urbanization—more in air than in soil
Cited by: 43
Author(s): Nerea Abrego, Brittni Joette Crosier, Panu Somervuo, Natalia V. Ivanova, Arusyak Abrahamyan, Ali A. Abdi, Karoliina Hämäläinen, Kaisa Junninen, Minna Maunula, Jenna Purhonen, Otso Ovaskainen
Software Mentions: 1
Published: over 4 years ago

10.3390/plants8110445

Whey: The Soil Bio-Community Enhancer That Selectively Controls Root-Knot Nematodes
Cited by: 4
Author(s): Nikoletta Ntalli, Maria A. Tsiafouli, Kaliopi Tzani, Olga Mavridi, Chrisostomos Oplos, Urania Menkissoglu‐Spiroudi, Nikolaos Monokrousos
Software Mentions: 1
Published: about 5 years ago

10.1038/s41396-019-0574-x

Mountain biodiversity and ecosystem functions: interplay between geology and contemporary environments
Cited by: 55
Author(s): Ang Hu, Jianjun Wang, Hang Sun, Bin Niu, Guicai Si, Jian Wang, Chih-Fu Yeh, Xin‐Xin Zhu, Xiancai Lu, Jizhong Zhou, Yongping Yang, Mei Ren, Yilun Hu, Hailiang Dong, Gengxin Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-09973-w

Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach
Cited by: 33
Author(s): Robert M. Starke, Felipe Bastida, J. Abadía, Carlos Garcı́a, Emilio Nicolás, Nico Jehmlich
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10818-9

Applications of unmanned aerial vehicles in intertidal reef monitoring
Cited by: 84
Author(s): Sarah L. Murfitt, Blake M. Allan, Alecia Bellgrove, Alex Rattray, Mary Young, Daniel Ierodiaconou
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10834-9

Aging-related changes in the diversity of women’s skin microbiomes associated with oral bacteria
Cited by: 122
Author(s): Nakako Shibagaki, Wataru Suda, Cécile Clavaud, Philippe Bastien, Lena Takayasu, Erica Iioka, Rina Kurokawa, Naoko Yamashita, Yasue Hattori, Chie Shindo, Lionel Breton, Masahira Hattori
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11069-4

Gender-based differences in host behavior and gut microbiota composition in response to high fat diet and stress in a mouse model
Cited by: 93
Author(s): Laura C. Bridgewater, Chenhong Zhang, Yanqiu Wu, Weiwei Hu, Qianpeng Zhang, Jing Wang, Shengtian Li, Liping Zhao
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms8111721

Characterization of the Kenyan Honey Bee (Apis mellifera) Gut Microbiota: A First Look at Tropical and Sub-Saharan African Bee Associated Microbiomes
Cited by: 14
Author(s): Yosef Hamba Tola, Jacqueline Wahura Waweru, Gregory D. D. Hurst, Bernard Slippers, Juan C. Paredes
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2015.00418

Examining the impact of acetylene on N-fixation and the active sediment microbial community
Cited by: 49
Author(s): Robinson W. Fulweiler, Elise M. Heiss, Mary Kate Rogener, Silvia E. Newell, Gary R. LeCleir, Sarah M. Kortebein, Steven W. Wilhelm
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-11441-4

Introduced ascidians harbor highly diverse and host-specific symbiotic microbial assemblages
Cited by: 31
Author(s): James S. Evans, Patrick M. Erwin, Noa Shenkar, Susanna López‐Legentil
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms7100463

Probiotics Prevents Sensitization to Oral Antigen and Subsequent Increases in Intestinal Tight Junction Permeability in Juvenile–Young Adult Rats
Cited by: 26
Author(s): Janyerkye Tulyeu, Hideki Kumagai, Eriko F. Jimbo, Shinya Watanabe, Koji Yokoyama, Longzhu Cui, Hitoshi Osaka, Makiko Mieno, Takanori Yamagata
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0164826

Evaluating the Effects of Different Vegetation Types on Necrophagous Fly Communities (Diptera: Calliphoridae; Sarcophagidae): Implications for Conservation
Cited by: 12
Author(s): Jorge Rodrigues de Sousa, Fernando da Silva Carvalho-Filho, Leandro Juen, Maria Cristina Espósito
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-11311-z

Dynamic oropharyngeal and faecal microbiota during treatment in infants hospitalized for bronchiolitis compared with age-matched healthy subjects
Cited by: 7
Author(s): Qian-Nan Hu, Wenkui Dai, Qian Zhou, Dan Fu, Yuejie Zheng, Wenjian Wang, Yanhong Liu, Qin Yang, De‐Zai Dai, Sixi Liu, Guosheng Liu, Shuai Cheng Li, Feiqiu Wen
Software Mentions: 1
Published: about 7 years ago

10.1093/plankt/fbu052

Parental exposure to elevated pCO2 influences the reproductive success of copepods
Cited by: 29
Author(s): Gemma Cripps, Penelope K. Lindeque, Kevin J. Flynn
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-10956-0

Under-ice availability of phytoplankton lipids is key to freshwater zooplankton winter survival
Cited by: 58
Author(s): Guillaume Grosbois, Heather L. Mariash, Tobias Schneider, Milla Rautio
Software Mentions: 1
Published: about 7 years ago

10.1038/s41396-019-0555-0

Air mass source determines airborne microbial diversity at the ocean–atmosphere interface of the Great Barrier Reef marine ecosystem
Cited by: 29
Author(s): Stephen Archer, Kevin C. Lee, Tancredi Caruso, Katie King-Miaow, Mike Harvey, Danwei Huang, Benjamin J. Wainwright, Stephen B. Pointing
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-12556-4

Potential effects of an invasive seaweed (Caulerpa cylindracea, Sonder) on sedimentary organic matter and microbial metabolic activities
Cited by: 32
Author(s): Lucia Rizzo, Antonio Pusceddu, Loredana Stabili, Pietro Alifano, Simonetta Fraschetti
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11699-8

Microbiome profile of the amniotic fluid as a predictive biomarker of perinatal outcome
Cited by: 77
Author(s): Daichi Urushiyama, Wataru Suda, Eriko Ohnishi, Ryoko Araki, Chihiro Kiyoshima, Masamitsu Kurakazu, Ayako Sanui, Fusanori Yotsumoto, Mariko Murata, Kazuki Nabeshima, Shin’ichiro Yasunaga, Shigeru Saito, Makoto Nomiyama, Masahira Hattori, Shingo Miyamoto, Kenichiro Hata
Software Mentions: 1
Published: about 7 years ago

10.3390/nu13010152

The Combined Effects of Magnesium Oxide and Inulin on Intestinal Microbiota and Cecal Short-Chain Fatty Acids
Cited by: 4
Author(s): Kanako Omori, Hiroki Miyakawa, Aya Watanabe, Yuki Nakayama, Yijin Lyu, Natsumi Ichikawa, Hiroyuki Sasaki, Shigenobu Shibata
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-017-12427-y

Pristine populations of habitat-forming gorgonian species on the Antarctic continental shelf
Cited by: 10
Author(s): Stefano Ambroso, Janire Salazar, Rebeca Zapata-Guardiola, Luisa Federwisch, Claudio Richter, Josep María Gili, Núria Teixidó
Software Mentions: 1
Published: about 7 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292