cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0161919

Spatio-Temporal Variation in Effects of Upwelling on the Fatty Acid Composition of Benthic Filter Feeders in the Southern Benguela Ecosystem: Not All Upwelling Is Equal
Cited by: 17
Author(s): Eleonora Puccinelli, Christopher D. McQuaid, Margaux Noyon
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2016.00590

Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship
Cited by: 35
Author(s): Mathias Milici, Jürgen Tomasch, Melissa L. Wos‐Oxley, Johan Decelle, Ruy Jáuregui, Hui Wang, Zhi-Luo Deng, Iris Plumeier, Helge-Ansgar Giebel, Thomas H. Badewien, Mascha Wurst, Dietmar H. Pieper, Meinhard Simon, Irene Wagner‐Döbler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0096798

Depth and Medium-Scale Spatial Processes Influence Fish Assemblage Structure of Unconsolidated Habitats in a Subtropical Marine Park
Cited by: 29
Author(s): Arthur L. Schultz, Hamish A. Malcolm, Daniel J Bucher, Michelle Linklater, Stephen Smith
Software Mentions: 1
Published: over 12 years ago

10.1128/mBio.00632-19

Alzheimer’s Disease Microbiome Is Associated with Dysregulation of the Anti-Inflammatory P-Glycoprotein Pathway
Cited by: 230
Author(s): John P. Haran, Shakti Bhattarai, Sage E. Foley, Protiva Dutta, Doyle V. Ward, Vanni Bucci, Beth A. McCormick
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.00067

Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics
Cited by: 14
Author(s): Jorianne Thyeska Castro Alves, Larissa Maranhão Dias, Jackeline Rossetti Mateus, Joana Montezano Marques, Diego Assis das Graças, Rommel Thiago Jucá Ramos, Lucy Seldin, Isabel Henriques, Artur M. S. Silva, Adriana Ribeiro Carneiro Folador
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0100300

The Genetic Structure of Staphylococcus aureus Populations from the Southwest Pacific
Cited by: 21
Author(s): Stephen Ritchie, Mark G. Thomas, Paul B. Rainey
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2018.01543

Effects of Nitrogen and Phosphorus Inputs on Soil Bacterial Abundance, Diversity, and Community Composition in Chinese Fir Plantations
Cited by: 101
Author(s): Qing Wang, Cong Wang, Weiwei Yu, Ali Turak, Diwen Chen, Ying Huang, Junhua Ao, Yong Jiang, Zhengrui Huang
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0032817

Forestry Alters Foraging Efficiency and Crop Contents of Aphid-Tending Red Wood Ants, Formica aquilonia
Cited by: 18
Author(s): Therese Johansson, Heloise Gibb
Software Mentions: 1
Published: over 14 years ago

10.1128/mBio.01470-19

Statistical Analysis of Community RNA Transcripts between Organic Carbon and Geogas-Fed Continental Deep Biosphere Groundwaters
Cited by: 6
Author(s): Margarita López-Fernández, Elias Broman, Domenico Simone, Stefan Bertilsson, Mark Dopson
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.659079

Microbial Communities and Interactions of Nitrogen Oxides With Methanogenesis in Diverse Peatlands of the Amazon Basin
Cited by: 7
Author(s): Steffen Buessecker, Zacary Zamora, Analissa F. Sarno, Damien Finn, Alison M. Hoyt, Joost van Haren, José David Urquiza Muñoz, Hinsby Cadillo‐Quiroz
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0147098

Relative Importance of Biotic and Abiotic Forces on the Composition and Dynamics of a Soft-Sediment Intertidal Community
Cited by: 32
Author(s): Travis G. Gerwing, David Drolet, Diana J. Hamilton, Myriam A. Barbeau
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.644046

Evaluation of Phenolic Root Exudates as Stimulants of Saptrophic Fungi in the Rhizosphere
Cited by: 15
Author(s): Anna Clocchiatti, S. Emilia Hannula, Marlies van den Berg, Maria P. J. Hundscheid, Wietse de Boer
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02722

Eukaryotic Phytoplankton Contributing to a Seasonal Bloom and Carbon Export Revealed by Tracking Sequence Variants in the Western North Pacific
Cited by: 10
Author(s): Takuhei Shiozaki, Yuu Hirose, Koji Hamasaki, Ryo Kaneko, K. Ishikawa, Naomi Harada
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0130823

The Micronesia Challenge: Assessing the Relative Contribution of Stressors on Coral Reefs to Facilitate Science-to-Management Feedback
Cited by: 45
Author(s): Peter Houk, Rodney Camacho, Steven Johnson, Matthew McLean, Selino Maxin, J. H Anson, Eugene Joseph, Osamu Nedlic, Marston Luckymis, Katrina Adams, Don Hess, Emma Kabua, Anthony Yalon, Eva Buthung, Curtis Graham, Trina Leberer, Brett M. Taylor, Robert van Woesik
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0103179

Spatio-Temporal Analyses of Symbiodinium Physiology of the Coral Pocillopora verrucosa along Large-Scale Nutrient and Temperature Gradients in the Red Sea
Cited by: 85
Author(s): Yvonne Sawall, Abdulmohsin Al-Sofyani, Eulalia Banguera-Hinestroza, Christian R. Voolstra
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0222145

Habitat disturbance and the organization of bacterial communities in Neotropical hematophagous arthropods
Cited by: 7
Author(s): Kelly L. Bennett, Alejandro Almanza, W. Owen McMillan, Kristin Saltonstall, Evangelina López Vdovenko, Jorge S. Vinda, Luis C. Mejía, Kaitlin Driesse, Luis F. De Léon, José R. Loaiza
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01733-19

Changes in Aphid Host Plant Diet Influence the Small-RNA Expression Profiles of Its Obligate Nutritional Symbiont, <i>Buchnera</i>
Cited by: 9
Author(s): Margaret W. Thairu, Allison K. Hansen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0206734

Summer shifts of bacterial communities associated with the invasive brown seaweed Sargassum muticum are location and tissue dependent
Cited by: 46
Author(s): Alexandra Serebryakova, Tânia Aires, Frédérique Viard, Ester Á. Serrão, Aschwin H. Engelen
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21207508

m6A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms
Cited by: 8
Author(s): Miriam Ruocco, Luca Ambrosino, Marlene Jahnke, Maria Luisa Chiusano, Isabel Barrote, Gabriele Procaccini, João Silva, Emanuela Dattolo
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0207825

Patterns of salinity regime in coastal lakes based on structure of benthic invertebrates
Cited by: 18
Author(s): Krystian Obolewski, Katarzyna Glińska-Lewczuk, Monika Szymańska, Natalia Mrozińska, Martyna Bąkowska, Aleksander Astel, Sylwia Lew, Ewa Paturej
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.01948

16S rRNA Gene Sequencing Reveals a Shift in the Microbiota of Diaphorina citri During the Psyllid Life Cycle
Cited by: 36
Author(s): Lixue Meng, Xiaoyang Li, Xiao-Qin Cheng, Hongyu Zhang
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.00682

An Assessment of Climate Induced Increase in Soil Water Availability for Soil Bacterial Communities Exposed to Long-Term Differential Phosphorus Fertilization
Cited by: 2
Author(s): Kate C. Randall, Fiona Brennan, Nicholas Clipson, Rachel Creamer, Bryan S. Griffiths, Sean Storey, Evelyn Doyle
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0154790

Effects of Detrital Subsidies on Soft-Sediment Ecosystem Function Are Transient and Source-Dependent
Cited by: 19
Author(s): Rebecca V. Gladstone‐Gallagher, Andrew M. Lohrer, Carolyn J. Lundquist, Conrad A. Pilditch
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0213869

16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics
Cited by: 18
Author(s): Christine Tara Peterson, Vandana Sharma, Stanislav N. Iablokov, Levent Albayrak, Kamil Khanipov, Sasha Uchitel, Deepak Chopra, Paul J. Mills, Yuriy Fofanov, Dmitry A. Rodionov, Scott N. Peterson
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21228733

Connection between the Gut Microbiome, Systemic Inflammation, Gut Permeability and FOXP3 Expression in Patients with Primary Sjögren’s Syndrome
Cited by: 33
Author(s): Antonio Cano-Ortiz, Aurora Laborda-Illanes, Isaac Plaza-Andrades, Alberto Membrillo del Pozo, Alberto Villarrubia, Marina Rodríguez‐Calvo‐de‐Mora, Isabel Leiva-Gea, Lidia Sánchez-Alcoholado, María Isabel Queipo-Ortuño
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21238946

The Gut-Muscle Axis in Older Subjects with Low Muscle Mass and Performance: A Proof of Concept Study Exploring Fecal Microbiota Composition and Function with Shotgun Metagenomics Sequencing
Cited by: 51
Author(s): Andrea Ticinesi, Leonardo Mancabelli, Sara Tagliaferri, Antonio Nouvenne, Christian Milani, Daniele Del Rio, Fulvio Lauretani, Marcello Maggio, Marco Ventura, Tiziana Meschi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0192496

No maternal or direct effects of ocean acidification on egg hatching in the Arctic copepod Calanus glacialis
Cited by: 10
Author(s): Peter Thor, Fanny Vermandele, Marie-Helene Carignan, Sarah Jacque, Piero Calosi
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0102640

SSU rDNA Sequence Diversity and Seasonally Differentiated Distribution of Nanoplanktonic Ciliates in Neritic Bohai and Yellow Seas as Revealed by T-RFLP
Cited by: 10
Author(s): Jun Dong, Fei Shi, Han Li, Xiaoming Zhang, Xiaozhong Hu, Jun Gong
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2016.02128

Nutritional Models of Experimentally-Induced Subacute Ruminal Acidosis (SARA) Differ in Their Impact on Rumen and Hindgut Bacterial Communities in Dairy Cows
Cited by: 67
Author(s): J.C. Plaizier, Shucong Li, Hein Min Tun, Ehsan Khafipour
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.02047

Interaction Between Conservation Tillage and Nitrogen Fertilization Shapes Prokaryotic and Fungal Diversity at Different Soil Depths: Evidence From a 23-Year Field Experiment in the Mediterranean Area
Cited by: 45
Author(s): Gaia Piazza, Laura Ercoli, Marco Nuti, Elisa Pellegrino
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0071108

Human Gut Microbiota Changes Reveal the Progression of Glucose Intolerance
Cited by: 584
Author(s): Xiuying Zhang, Dongqian Shen, Zhiwei Fang, Zhuye Jie, Xinmin Qiu, Chunfang Zhang, Yingli Chen, Linong Ji
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2020.00053

Long-Term Effects of Multi-Drug-Resistant Tuberculosis Treatment on Gut Microbiota and Its Health Consequences
Cited by: 26
Author(s): Jinyu Wang, Ke Xiong, Shanliang Zhao, Chao Zhang, Jianwen Zhang, Lei Xu, Aiguo Ma
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0073922

Long-Term Recovery Patterns and Limited Spillover of Large Predatory Fish in a Mediterranean MPA
Cited by: 67
Author(s): Antoni García-Rubies, Bernat Hereu, Míkel Zabala
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0119441

Ablation of Tumor Necrosis Factor Is Associated with Decreased Inflammation and Alterations of the Microbiota in a Mouse Model of Inflammatory Bowel Disease
Cited by: 52
Author(s): Yava Jones‐Hall, Ariangela J. Kozik, Cindy H. Nakatsu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0163494

Role of Recruitment Processes in Structuring Coralligenous Benthic Assemblages in the Northern Adriatic Continental Shelf
Cited by: 22
Author(s): Federica Fava, Massimo Ponti, Marco Abbiati
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2017.02494

Fight Fungi with Fungi: Antifungal Properties of the Amphibian Mycobiome
Cited by: 46
Author(s): Patrick J. Kearns, Sarah Fischer, Saioa Fernández-Beaskoetxea, Caitlin R. Gabor, Jaime Bosch, Jennifer L. Bowen, Michael F. Tlusty, Douglas C. Woodhams
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.02693

Regrowth of Microcosm Biofilms on Titanium Surfaces After Various Antimicrobial Treatments
Cited by: 12
Author(s): Qi Han, Yaling Jiang, Bernd W. Brandt, Jiamin Yang, Yu Chen, M.J. Buijs, Wim Crielaard, Lei Cheng, Dongmei Deng
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0150899

Avian Assemblages at Bird Baths: A Comparison of Urban and Rural Bird Baths in Australia
Cited by: 10
Author(s): Grainne Cleary, Holly Parsons, Adrian L. V. Davis, Bill R. Coleman, Darryl Jones, Kelly K. Miller, Michael A. Weston
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2019.01319

Soil Photosynthetic Microbial Communities Mediate Aggregate Stability: Influence of Cropping Systems and Herbicide Use in an Agricultural Soil
Cited by: 31
Author(s): Olivier Crouzet, Laurent Consentino, Jean-Pierre Pétraud, Christelle Marrauld, Jean‐Pierre Aguer, Sylvie Bureau, Carine Le Bourvellec, Line Touloumet, Annette Bérard
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2016.01377

Unexpectedly High Beta-Diversity of Root-Associated Fungal Communities in the Bolivian Andes
Cited by: 25
Author(s): Christopher J. Barnes, Carla Maldonado, Tobias Guldberg Frøslev, Alexandre Antonelli, Nina Rønsted
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0240597

Short-term impact of sediment addition on plants and invertebrates in a southern California salt marsh
Cited by: 3
Author(s): Kaelin J. McAtee, Karen M. Thorne, Christine R. Whitcraft
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0234920

Sanguinarine modulate gut microbiome and intestinal morphology to enhance growth performance in broilers
Cited by: 28
Author(s): Zhu-Ying Liu, Xiaolong Wang, Shu-Qi Ou, De–Xing Hou, Jianhua He
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0059310

Bacterial Communities Associated with the Surfaces of Fresh Fruits and Vegetables
Cited by: 333
Author(s): Jonathan W. Leff, Noah Fierer
Software Mentions: 1
Published: over 13 years ago

10.3390/ijms22020689

Paternal Methyl Donor Supplementation in Rats Improves Fertility, Physiological Outcomes, Gut Microbial Signatures and Epigenetic Markers Altered by High Fat/High Sucrose Diet
Cited by: 7
Author(s): Faye Chleilat, Alana Schick, Julie Deleemans, Raylene A. Reimer
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22031233

Intestinal SIRT1 Deficiency-Related Intestinal Inflammation and Dysbiosis Aggravate TNFα-Mediated Renal Dysfunction in Cirrhotic Ascitic Mice
Cited by: 6
Author(s): Yu Te Chou, Tze Tze Liu, Ueng Cheng Yang, Chia Chang Huang, Chih Wei Liu, Shiang Fen Huang, Tzu-Hao Li, Hsuan Miao Liu, Ming Lin, Ying Yang, Tzung-Yan Lee, Yi Hsiang Huang, Ming Hou, Han Chieh Lin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0122632

Fish Assemblages of Mediterranean Marine Caves
Cited by: 17
Author(s): Simona Bussotti, Antonio Franco, Patrice Francour, Paolo Guidetti
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0091056

Relationships between Meiofaunal Biodiversity and Prokaryotic Heterotrophic Production in Different Tropical Habitats and Oceanic Regions
Cited by: 40
Author(s): Antonio Pusceddu, Cristina Gambi, Cinzia Corinaldesi, Mariaspina Scopa, Roberto Danovaro
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms22041647

A Newly Developed Synbiotic Yogurt Prevents Diabetes by Improving the Microbiome–Intestine–Pancreas Axis
Cited by: 13
Author(s): Brandi Miller, Rabina Mainali, Ravinder Nagpal, Hariom Yadav
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0171352

Differences in gut microbiota profile between women with active lifestyle and sedentary women
Cited by: 305
Author(s): Carlo Bressa, María Bailén-Andrino, Jennifer Pérez-Santiago, Rocío González-Soltero, Margarita Pérez, Maria Gregoria Montalvo-Lominchar, José Luis Maté-Muñoz, Raúl Domínguez, Diego A. Moreno, Mar Larrosa
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22052331

Five Days Periodic Fasting Elevates Levels of Longevity Related Christensenella and Sirtuin Expression in Humans
Cited by: 22
Author(s): Stephanie Lilja, Carina Stoll, Ulrike Krammer, Berit Hippe, Kalina Duszka, Tewodros Debebe, Ingrid Höfinger, Jürgen König, Angelika Pointner, Alexander G. Haslberger
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0208281

Effects of acute exposures of 2,4,6-trinitrotoluene and inorganic lead on the fecal microbiome of the green anole (Anolis carolinensis)
Cited by: 7
Author(s): Karl J. Indest, Steven Everman, James H. Lindsay, Carina M. Jung, Jennifer M. Smith, Sandra B. Newell
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22052453

Examining the Gastrointestinal and Immunomodulatory Effects of the Novel Probiotic Bacillus subtilis DE111
Cited by: 19
Author(s): Kimberley E. Freedman, Jessica L. Hill, Yu Wei, Allegra R. Vazquez, Diana S. Grubb, Roxanne E. Trotter, Scott D. Wrigley, Sarah Johnson, Michelle T. Foster, Tiffany L. Weir
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2015.01008

Bacterial endophyte communities in the foliage of coast redwood and giant sequoia
Cited by: 47
Author(s): Alyssa A. Carrell, A. Carolin Frank
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2019.02397

Species-Specific Differences in the Microbiomes and Organic Exudates of Crustose Coralline Algae Influence Bacterioplankton Communities
Cited by: 13
Author(s): Zachary A. Quinlan, Raphael Ritson‐Williams, Brenna J Carroll, Craig A. Carlson, Craig E. Nelson
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu12061705

The High-Fat Diet Based on Extra-Virgin Olive Oil Causes Dysbiosis Linked to Colorectal Cancer Prevention
Cited by: 19
Author(s): Carmen Rodríguez-García, Cristina Sánchez-Quesada, Ignacio Algarra, José J. Gaforio
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.02001

Assessment of Bacterial Communities Associated With the Skin of Costa Rican Amphibians at La Selva Biological Station
Cited by: 17
Author(s): Juan G. Abarca, Gabriel Vargas, Ibrahim Zuñiga, Steven M. Whitfield, Douglas C. Woodhams, Jacob L. Kerby, Valerie J. McKenzie, Catalina Murillo‐Cruz, Adrián A. Pinto‐Tomás
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0169049

Assessment and Characterisation of Ireland's Green Tides (Ulva Species)
Cited by: 51
Author(s): Alex H. L. Wan, Robert Wilkes, Svenja Heesch, Ricardo Bermejo, Mark P. Johnson, Liam Morrison
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0255633

Microbial communities of poultry house dust, excreta and litter are partially representative of microbiota of chicken caecum and ileum
Cited by: 17
Author(s): Yugal Raj Bindari, Robert J. Moore, Thi Thu Hao Van, Matthew Hilliar, Shu‐Biao Wu, Stephen W. Walkden‐Brown, Priscilla F. Gerber
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22094734

Gut Susceptibility to Viral Invasion: Contributing Roles of Diet, Microbiota and Enteric Nervous System to Mucosal Barrier Preservation
Cited by: 7
Author(s): Marcela Julio‐Pieper, Alejandra López-Aguilera, Johana Eyzaguirre-Velásquez, Loreto Olavarría-Ramírez, Claudia Ibacache-Quiroga, Javier A. Bravo, Gonzalo Cruz
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00729

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea
Cited by: 15
Author(s): Michael F. Graw, Grace D’Angelo, Matthew Borchers, Andrew R. Thurber, Joel E. Johnson, Chuanlun Zhang, Haodong Liu, Frederick S. Colwell
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms22095005

A Tryptophan-Deficient Diet Induces Gut Microbiota Dysbiosis and Increases Systemic Inflammation in Aged Mice
Cited by: 30
Author(s): Ibrahim Yusufu, Kai Ding, Kathryn E. Smith, Umesh D. Wankhade, Bikash Sahay, Gregory Taylor Patterson, Rafał Pacholczyk, Satish Adusumilli, Mark W. Hamrick, William Hill, Carlos M. Isales, Sadanand Fulzele
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12030631

Effect of Caloric Restriction on BMI, Gut Microbiota, and Blood Amino Acid Levels in Non-Obese Adults
Cited by: 34
Author(s): Huajie Zou, Dan Wang, Huahui Ren, Kaiye Cai, Peishan Chen, Chao Fang, Zhun Shi, Pengfan Zhang, Jian Wang, Huanming Yang, Zhong Huang
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.584850

Highly Contaminated Marine Sediments Can Host Rare Bacterial Taxa Potentially Useful for Bioremediation
Cited by: 30
Author(s): Filippo Dell’Anno, Eugenio Rastelli, Michael Tangherlini, Cinzia Corinaldesi, Clementina Sansone, Christophe Brunet, Sergio Balzano, Adrianna Ianora, Luigi Musco, Maria Rita Montereali, Antonio Dell’Anno
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0168196

Seasonal Variations in Surface Metabolite Composition of Fucus vesiculosus and Fucus serratus from the Baltic Sea
Cited by: 20
Author(s): Esther Rickert, Martin Wahl, Heike Link, Hannes Richter, Georg Pohnert
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0171910

Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages
Cited by: 11
Author(s): Shelly Wu, Elizabeth A. Bergey
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0182271

Temporal dynamics of in-situ fiber-adherent bacterial community under ruminal acidotic conditions determined by 16S rRNA gene profiling
Cited by: 11
Author(s): Renée M. Petri, P. Pourazad, Ratchaneewan Khiaosa‐ard, Fenja Klevenhusen, Barbara U. Metzler‐Zebeli, Qendrim Zebeli
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms221910616

Monocarboxylate Transporter-2 Expression Restricts Tumor Growth in a Murine Model of Lung Cancer: A Multi-Omic Analysis
Cited by: 2
Author(s): Abdelnaby Khalyfa, Zhuanhong Qiao, Murugesan Raju, Chi‐Ren Shyu, Lyndon M. Coghill, Aaron C. Ericsson, David Gozal
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0123020

Control of Origin of Sesame Oil from Various Countries by Stable Isotope Analysis and DNA Based Markers—A Pilot Study
Cited by: 22
Author(s): Micha Horacek, Karin Hansel-Hohl, K. Burg, Gerhard Soja, Walter Okello-Anyanga, Silvia Fluch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0090542

From Trap to Nursery. Mitigating the Impact of an Artisanal Fishery on Cuttlefish Offspring
Cited by: 19
Author(s): Valentina Melli, Emilio Riginella, Marco Aurélio Nalon, Carlotta Mazzoldi
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0066665

Evaluation of Common Methods for Sampling Invertebrate Pollinator Assemblages: Net Sampling Out-Perform Pan Traps
Cited by: 87
Author(s): Tony J. Popic, Yvonne C. Davila, Glenda M. Wardle
Software Mentions: 1
Published: about 13 years ago

10.3390/nu12103020

Alterations in the Intestinal Morphology, Gut Microbiota, and Trace Mineral Status Following Intra-Amniotic Administration (Gallus gallus) of Teff (Eragrostis tef) Seed Extracts
Cited by: 19
Author(s): Johnathon Carboni, Spenser Reed, Nikolai Kolba, Adi Eshel, Omry Koren, Elad Tako
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.00120

Distinct Types of Gut Microbiota Dysbiosis in Hospitalized Gastroenterological Patients Are Disease Non-related and Characterized With the Predominance of Either Enterobacteriaceae or Enterococcus
Cited by: 19
Author(s): Aleksander Mahnič, Martin Breskvar, Sašo Džeroski, Pavel Skok, Špela Pintar, Maja Rupnik
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.656656

Build Your Own Mushroom Soil: Microbiota Succession and Nutritional Accumulation in Semi-Synthetic Substratum Drive the Fructification of a Soil-Saprotrophic Morel
Cited by: 21
Author(s): Hao Tan, Yang Yu, Jie Tang, Tianhai Liu, Renyun Miao, Huang ZhongQian, Francis Martin, Weihong Peng
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0092834

Patterns of Deep-Water Coral Diversity in the Caribbean Basin and Adjacent Southern Waters: An Approach based on Records from the R/V Pillsbury Expeditions
Cited by: 10
Author(s): Iván Hernández-Ávila
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0048410

Effects of Non-Indigenous Oysters on Microbial Diversity and Ecosystem Functioning
Cited by: 33
Author(s): Dannielle S. Green, Bas Boots, Tasman P. Crowe
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0143123

A Comparison of Microbial Water Quality and Diversity for Ballast and Tropical Harbor Waters
Cited by: 43
Author(s): Charmaine Ng, Thai Hoang Le, Shin Giek Goh, Liang Liang, Yiseul Kim, Joan B. Rose, Karina Gin Yew-Hoong
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2015.00193

Stable microbial community composition on the Greenland Ice Sheet
Cited by: 53
Author(s): Michaela Musilova, Martyn Tranter, Sarah A. Bennett, Jemma L. Wadham, Alexandre M. Anesio
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0110831

Quantifying Fish Assemblages in Large, Offshore Marine Protected Areas: An Australian Case Study
Cited by: 23
Author(s): Nicole Hill, Neville S. Barrett, Emma Lawrence, J Hulls, Jeffrey M. Dambacher, Scott L. Nichol, Alan Williams, Keith R. Hayes
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0203666

Differentiation in fitness-related traits in response to elevated temperatures between leading and trailing edge populations of marine macrophytes
Cited by: 23
Author(s): Catarina Mota, Aschwin H. Engelen, Ester A. Serrão, Márcio A. G. Coelho, Núria Marbà, Dorte Krause‐Jensen, Gareth A. Pearson
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2019.02858

Intestinal Pioneer Colonizers as Drivers of Ileal Microbial Composition and Diversity of Broiler Chickens
Cited by: 27
Author(s): Denise Russi Rodrigues, Emily Winson, Kim Wilson, W.N. Briggs, Audrey F. Duff, K.M. Chasser, Lisa R. Bielke
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.726483

Metataxonomic Analysis of Grape Microbiota During Wine Fermentation Reveals the Distinction of Cyprus Regional terroirs
Cited by: 11
Author(s): Eleni Kamilari, Minas A. Mina, Christos Karallis, Dimitrios Tsaltas
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0146122

Effects of Fishing and Fishing Closures on Beach Clams: Experimental Evaluation across Commercially Fished and Non-Fished Beaches before and during Harvesting
Cited by: 13
Author(s): Charles A. Gray
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0104996

Random Whole Metagenomic Sequencing for Forensic Discrimination of Soils
Cited by: 38
Author(s): Anastasia S. Khodakova, Renee J. Smith, Leigh A. Burgoyne, Damien Abarno, Adrian Linacre
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0247220

Microbial communities developing within bulk sediments under fish carcasses on a tidal flat
Cited by: 3
Author(s): Yasutake Kawamoto, Hiromi Kato, Yasunobu Nagata, Jotaro Urabe
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00891

Comparing Gut Microbiome in Mothers’ Own Breast Milk- and Formula-Fed Moderate-Late Preterm Infants
Cited by: 24
Author(s): Ziyi Wang, Achal Neupane, Richard Vo, Jessica White, Xiuqing Wang, Shin-Yi Lee Marzano
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.718884

Mucosal Microbiota and Metabolome in the Ileum of Hu Sheep Offered a Low-Grain, Pelleted or Non-pelleted High-Grain Diet
Cited by: 3
Author(s): Ruiyang Zhang, Zhiqiang Zhong, Huiting Ma, Limei Lin, Fei Xie, Shengyong Mao, David M. Irwin, Zhe Wang, Shuyi Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2021.678012

Massive Survey on Bacterial–Bacteriophages Biodiversity and Quality of Natural Whey Starter Cultures in Trentingrana Cheese Production
Cited by: 5
Author(s): Mancini Am, Maria Cid Rodriguez, Miriam Zago, Nicola Cologna, Andrea Goss, Ilaria Carafa, Kieran Tuohy, Andrea Merz, Elena Franciosi
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.541583

Forest Microhabitat Affects Succession of Fungal Communities on Decomposing Fine Tree Roots
Cited by: 11
Author(s): Petr Kohout, Radka Sudová, Vendula Brabcová, Stanislav Vosolsobě, Petr Baldrián, Jana Albrechtová
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00153

Microbial and Viral Communities and Their Antibiotic Resistance Genes Throughout a Hospital Wastewater Treatment System
Cited by: 54
Author(s): Morgan Petrovich, Adi Zilberman, Aviv Kaplan, Gefen R. Eliraz, Yübo Wang, Kathryn Langenfeld, Melissa B. Duhaime, Krista Wigginton, Rachel Poretsky, Dror Avisar, George F. Wells
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0031757

Population-Level Metrics of Trophic Structure Based on Stable Isotopes and Their Application to Invasion Ecology
Cited by: 292
Author(s): Michelle C. Jackson, Ian Donohue, Andrew L. Jackson, J. Robert Britton, David M. Harper, Jonathan Grey
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0206821

Establishing spatial and temporal patterns in Microcystis sediment seed stock viability and their relationship to subsequent bloom development in Western Lake Erie
Cited by: 24
Author(s): Christine Kitchens, Thomas H. Johengen, Timothy W. Davis
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0023744

Low Dynamics, High Longevity and Persistence of Sessile Structural Species Dwelling on Mediterranean Coralligenous Outcrops
Cited by: 64
Author(s): Núria Teixidó, Joaquim Garrabou, J. G. Harmelin
Software Mentions: 1
Published: almost 15 years ago

10.1093/jn/nxaa219

Avocado Consumption Alters Gastrointestinal Bacteria Abundance and Microbial Metabolite Concentrations among Adults with Overweight or Obesity: A Randomized Controlled Trial
Cited by: 23
Author(s): Sharon V. Thompson, Melisa A Bailey, Andrew M. Taylor, Jennifer Kaczmarek, Annemarie R Mysonhimer, Caitlyn G. Edwards, Ginger E. Reeser, Nicholas A. Burd, Naiman A. Khan, Hannah D. Holscher
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01870

The Shifts of Diazotrophic Communities in Spring and Summer Associated with Coral Galaxea astreata, Pavona decussata, and Porites lutea
Cited by: 10
Author(s): Yanying Zhang, Qingsong Yang, Juan Ling, Joy D. Van Nostrand, Zhou Shi, Jizhong Zhou, Jinyun Dong
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0126854

Integrating Taxonomic, Functional and Phylogenetic Beta Diversities: Interactive Effects with the Biome and Land Use across Taxa
Cited by: 37
Author(s): Julián Martín Corbelli, Gustavo A. Zurita, Julieta Filloy, Juan Pablo Galvis, Natalia I. Vespa, Isabel Bellocq
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2017.01972

Strong Regionality and Dominance of Anaerobic Bacterial Taxa Characterize Diazotrophic Bacterial Communities of the Arcto-Alpine Plant Species Oxyria digyna and Saxifraga oppositifolia
Cited by: 7
Author(s): Manoj Kumar, Jan Dirk van Elsas, Riitta Nissinen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0075079

Strong Stability and Host Specific Bacterial Community in Faeces of Ponies
Cited by: 49
Author(s): Tina Blackmore, Alex Dugdale, Caroline McG. Argo, G. C. Curtis, Eric Pinloche, Pat Harris, Hilary J. Worgan, Susan Elizabeth Girdwood, Kirsty Dougal, C. J. Newbold, Neil McEwan
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2019.01536

Nexus of Stochastic and Deterministic Processes on Microbial Community Assembly in Biological Systems
Cited by: 28
Author(s): Heyang Yuan, Renwei Mei, Junhui Liao, Wen Tso Liu
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.02535

Temporal Variation of the Skin Bacterial Community and Batrachochytrium dendrobatidis Infection in the Terrestrial Cryptic Frog Philoria loveridgei
Cited by: 25
Author(s): Mariel Familiar López, Eria A. Rebollar, Reid N. Harris, Vance T. Vredenburg, Jean‐Marc Hero
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.02000

The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine Herbivorous Fish
Cited by: 50
Author(s): Jacquelyn Jones, Joseph D. DiBattista, Michael Stat, Michael Bunce, Mary C. Boyce, David V. Fairclough, Michael J. Travers, Megan J. Huggett
Software Mentions: 1
Published: almost 8 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292