cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2020.00200

Murine Gut Microbiome Association With APOE Alleles
Cited by: 34
Author(s): Ishita Parikh, Janice L. Estus, Diana J. Zajac, Manasi Malik, Juan Maldonado Weng, Leon M. Tai, George E. Chlipala, Mary Jo LaDu, Stefan J. Green, Steven Estus
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.607754

Gut–Liver Immune Response and Gut Microbiota Profiling Reveal the Pathogenic Mechanisms of Vibrio harveyi in Pearl Gentian Grouper (Epinephelus lanceolatus♂ × E. fuscoguttatus♀)
Cited by: 31
Author(s): Yiqin Deng, Yaqiu Zhang, Haoxiang Chen, Li‐Wen Xu, Qian Wang, Feng Jiang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0168735

Seawater pH Predicted for the Year 2100 Affects the Metabolic Response to Feeding in Copepodites of the Arctic Copepod Calanus glacialis
Cited by: 10
Author(s): Peter Thor, Allison Bailey, Claudia Halsband, Ella Guscelli, Elena Gorokhova, Agneta Fransson
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0118952

Resources Alter the Structure and Increase Stochasticity in Bromeliad Microfauna Communities
Cited by: 10
Author(s): Jana S. Petermann, Pavel Kratina, Nicholas A. C. Marino, A Macdonald, Diane S. Srivastava
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2021.713485

Glycerol Monolaurate Ameliorated Intestinal Barrier and Immunity in Broilers by Regulating Intestinal Inflammation, Antioxidant Balance, and Intestinal Microbiota
Cited by: 19
Author(s): Linglian Kong, Zhenhua Wang, Chuanpi Xiao, Qidong Zhu, Zhigang Song
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2020.607609

Neonatal Diet Impacts the Large Intestine Luminal Metabolome at Weaning and Post-Weaning in Piglets Fed Formula or Human Milk
Cited by: 5
Author(s): Fernanda Rosa, Katelin S. Matazel, Anne K. Bowlin, Keith D. Williams, Ahmed A. Elolimy, Sean H. Adams, Lars Bode, Laxmi Yeruva
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0226099

Cattle intestinal microbiota shifts following Escherichia coli O157:H7 vaccination and colonization
Cited by: 15
Author(s): Raies A. Mir, Robert G. Schaut, Heather K. Allen, Torey Looft, Crystal L. Loving, Indira T. Kudva, Vijay Kumar Sharma
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.01703

Microbiome and Metabolome Analyses Reveal the Disruption of Lipid Metabolism in Systemic Lupus Erythematosus
Cited by: 51
Author(s): Jingquan He, Tianlong Chan, Xiaoping Hong, Fengping Zheng, Chaowei Zhu, Yin Li, Weier Dai, Donge Tang, Dongzhou Liu, Yong Dai
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-90877-1

Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China
Cited by: 12
Author(s): Vincent L. Pecoraro, Henrik Rasmussen, Sofia I. F. Gomes, Xiao Wang, Vincent Merckx, Lei Cai, Folke Rasmussen
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2019.00666

Oral Administration of Compound Probiotics Improved Canine Feed Intake, Weight Gain, Immunity and Intestinal Microbiota
Cited by: 50
Author(s): Haiyan Xu, Weiqiang Huang, Qiangchuan Hou, Lai‐Yu Kwok, Wuri Laga, Yanjie Wang, Hongbing Ma, Zhihong Sun, Heping Zhang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-91066-w

Plant debris are hotbeds for pathogenic bacteria on recreational sandy beaches
Cited by: 4
Author(s): Yoshihiro Suzuki, Hiroki Shimizu, Takahiro Kuroda, Yusuke Takada, Kei Nukazawa
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0208223

Desert plant bacteria reveal host influence and beneficial plant growth properties
Cited by: 65
Author(s): Abdul Aziz Eida, Maren Ziegler, Feras F. Lafi, Craig Michell, Christian R. Voolstra, Heribert Hirt, Maged M. Saad
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.00468

Fungal Dysbiosis and Intestinal Inflammation in Children With Beta-Cell Autoimmunity
Cited by: 31
Author(s): Jarno Honkanen, Arja Vuorela, Daniel Muthas, L. Orivuori, Kristiina Luopajärvi, Mysore V. Tejesvi, Anton Lavrinienko, Anna Maria Pirttilä, Christopher L. Fogarty, Taina Härkönen, Jorma Ilonen, Terhi Ruohtula, Mikael Knip, Janne J. Koskimäki, Outi Vaarala
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0113515

Temporal and Spatial Stability of Ammonia-Oxidizing Archaea and Bacteria in Aquarium Biofilters
Cited by: 32
Author(s): Samik Bagchi, Siegfried E. Vlaeminck, Laura A. Sauder, Mariela Mosquera, Josh D. Neufeld, Nico Boon
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0175746

Variation in benthic long-term data of transitional waters: Is interpretation more than speculation?
Cited by: 29
Author(s): Michael L. Zettler, René Friedland, Mayya Gogina, Alexander Darr
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2020.01654

Altered Microbiota, Impaired Quality of Life, Malabsorption, Infection, and Inflammation in CVID Patients With Diarrhoea
Cited by: 17
Author(s): Cornelia M. van Schewick, Christina Nöltner, Svenja Abel, Siobhan O. Burns, Sarita Workman, Andrew Symes, David Sánchez-Migallón Guzman, Michele Proietti, Alla Bulashevska, Fernando Moreira, Veronika Soetedjo, David M. Lowe, Bodo Grimbacher
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0246957

Dysbiosis of fecal microbiota in cats with naturally occurring and experimentally induced Tritrichomonas foetus infection
Cited by: 7
Author(s): Metzere Bierlein, Barry A. Hedgespeth, M. Andrea Azcárate-Peril, Stephen H. Stauffer, Jody L. Gookin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0258119

Response of eelgrass (Zostera marina) to an adjacent Olympia oyster restoration project
Cited by: 0
Author(s): Sara Briley, Rick Ware, Christine R. Whitcraft, Danielle C. Zacherl
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-90976-z

Mortality and microbial diversity after allogeneic hematopoietic stem cell transplantation: secondary analysis of a randomized nutritional intervention trial
Cited by: 6
Author(s): Kristin Aneta Joan Skaarud, Johannes Espolin Roksund Hov, Simen Hyll Hansen, Martin Kummen, Jørgen Valeur, Ingebjørg Seljeflot, Asta Bye, Vemund Paulsen, Knut E.A. Lundin, Marius Trøseid, Geir E. Tjønnfjord, Per Ole Iversen
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.700570

Adalimumab Therapy Restores the Gut Microbiota in Patients With Ankylosing Spondylitis
Cited by: 14
Author(s): Zena Chen, Xuqi Zheng, Xinyu Wu, Jialing Wu, Xiaomin Li, Qiujing Wei, Xi Zhang, Lin Fang, Ou Jin, Gu J
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnint.2021.719076

A Multivariate Assessment of Age-Related Cognitive Impairment in Octodon degus
Cited by: 7
Author(s): Daniela Rivera, Carolina B. Lindsay, Carolina A. Oliva, Francisco Bozinovic, Nibaldo C. Inestrosa
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmars.2020.566663

Energy Sources of the Depth-Generalist Mixotrophic Coral Stylophora pistillata
Cited by: 27
Author(s): Stephane Martinez, Yehoshua Kolodny, Eli Shemesh, Federica Scucchia, Reinat Nevo, Smadar Levin-Zaidman, Yossi Paltiel, Nir Keren, Dan Tchernov, Tali Mass
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmed.2021.637246

Compare the Effect of Inhaled Corticosteroids and Systemic Corticosteroids on Sputum Microbiome of AECOPD
Cited by: 4
Author(s): Nan Ma, Yu-Jing Qi, Xiaona Liang, Jing Bai, Jingmin Deng, Meihua Li, He Zhou
Software Mentions: 1
Published: over 5 years ago

10.3389/fmed.2021.655474

Gut Microbiota and Related Electronic Multisensorial System Changes in Subjects With Symptomatic Uncomplicated Diverticular Disease Undergoing Rifaximin Therapy
Cited by: 6
Author(s): Antonio De Vincentis, Marco Santonico, Federica Del Chierico, Annamaria Altomare, Benedetta Marigliano, Alice Laudisio, Sofia Reddel, Simone Grasso, Alessandro Zompanti, Giorgio Pennazza, Lorenza Putignani, Michele Pier Luca Guarino, Michele Cicala, Raffaele Antonelli Incalzi
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0253314

Latitudinal changes in the lipid content and fatty acid profiles of juvenile female red squat lobsters (Pleuroncodes monodon) in breeding areas of the Humboldt Current System
Cited by: 9
Author(s): Fabián Guzmán‐Rivas, Marco Quispe‐Machaca, Dante Queirolo, Mauricio Ahumada, Ángel Urzúa
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0058998

Small-Scale Habitat Structure Modulates the Effects of No-Take Marine Reserves for Coral Reef Macroinvertebrates
Cited by: 23
Author(s): Pascal Dumas, H. Jimenez, Christophe Peignon, Laurent Wantiez, Mehdi Adjeroud
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0027936

Positive Edge Effects on Forest-Interior Cryptogams in Clear-Cuts
Cited by: 22
Author(s): Alexandro Caruso, Jörgen Rudolphi, Håkan Rydin
Software Mentions: 1
Published: almost 15 years ago

10.3390/molecules25173960

31P-NMR Metabolomics Revealed Species-Specific Use of Phosphorous in Trees of a French Guiana Rainforest
Cited by: 6
Author(s): Albert Gargallo‐Garriga, Jordi Sardans, Joan Llusià, Guille Peguero, Dolores Asensio, Romá Ogaya, Ifigenia Urbina, Leandro Van Langenhove, Lore T. Verryckt, Elodie A. Courtois, Clément Stahl, Oriol Grau, Otmar Urban, Ivan A. Janssens, Pau Nolis, Míriam Pérez‐Trujillo, Teodor Parella, Josep Peñuelas
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.02262

Similar Shift Patterns in Gut Bacterial and Fungal Communities Across the Life Stages of Bactrocera minax Larvae From Two Field Populations
Cited by: 26
Author(s): Zhichao Yao, Qiongke Ma, Zhaohui Cai, Muhammad Fahim Raza, Shuai Bai, Yichen Wang, Ping Zhang, Hua Ma, Hongyu Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0024318

Synergistic Interactions within Disturbed Habitats between Temperature, Relative Humidity and UVB Radiation on Egg Survival in a Diadromous Fish
Cited by: 17
Author(s): Michael J. H. Hickford, David R. Schiel
Software Mentions: 1
Published: almost 15 years ago

10.3389/fmicb.2015.01130

VarR controls colonization and virulence in the marine macroalgal pathogen Nautella italica R11
Cited by: 17
Author(s): Melissa Gardiner, Neil D. Fernandes, Dennis Nowakowski, Mark J. Raftery, Staffan Kjelleberg, Ling Zhong, Torsten Thomas, Suhelen Egan
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2018.01400

Diversity of Fungal Communities in Heshang Cave of Central China Revealed by Mycobiome-Sequencing
Cited by: 20
Author(s): Baiying Man, Hongmei Wang, Yuan Yun, Xiang Xiao, Ruicheng Wang, Yonggang Duan, Xiaoyu Cheng
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2021.570908

Nitrogen Deposition Reduces the Diversity and Abundance of cbbL Gene-Containing CO2-Fixing Microorganisms in the Soil of the Stipa baicalensis Steppe
Cited by: 10
Author(s): Jie Qin, Ming Li, Haifang Zhang, Hongmei Liu, Junjie Zhao, Yang Dian-lin
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00171

Characterization of the Core and Caste-Specific Microbiota in the Termite, Reticulitermes flavipes
Cited by: 56
Author(s): Jacquelynn Benjamino, Joerg Graf
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2017.00350

An Endohyphal Bacterium (Chitinophaga, Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum (F. solani Species Complex, Nectriaceae)
Cited by: 58
Author(s): Justin P. Shaffer, Jana M. U’Ren, Rachel E. Gallery, David A. Baltrus, A. Elizabeth Arnold
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01127

Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage Regimes
Cited by: 100
Author(s): Florine Degrune, Nicolas Theodorakopoulos, Gilles Colinet, Marie-Pierre Hiel, Bernard Bodson, Bernard Taminiau, Georges Daube, Micheline Vandenbol, Martin Hartmann
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.01446

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies
Cited by: 394
Author(s): Davide Francioli, Elke Schulz, Guillaume Lentendu, Tesfaye Wubet, François Buscot, Thomas Reitz
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0042497

Adaptive Capacity of the Habitat Modifying Sea Urchin Centrostephanus rodgersii to Ocean Warming and Ocean Acidification: Performance of Early Embryos
Cited by: 118
Author(s): Shawna A. Foo, Symon A. Dworjanyn, Alistair G. B. Poore, Maria Byrne
Software Mentions: 1
Published: about 14 years ago

10.1038/s41598-021-91351-8

Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat
Cited by: 27
Author(s): Holly Hone, Ross Mann, Guodong Yang, Jatinder Kaur, Ian Tannenbaum, Tongda Li, Germán Spangenberg, Tim Sawbridge
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0191859

Anthropogenic marine litter composition in coastal areas may be a predictor of potentially invasive rafting fauna
Cited by: 59
Author(s): Sabine Rech, Yaisel J. Borrell Pichs, Eva García‐Vázquez
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.661515

Effects of Field Fumigation and Inoculation With the Pecan Truffle (Tuber lyonii) on the Fungal Community of Pecan (Carya illinoinensis) Seedlings Over 5 Years
Cited by: 3
Author(s): Arthur C. Grupe, Michelle A. Jusino, Alija B. Mujic, Brantlee Spakes Richter, Gregory Bonito, T. B. Brenneman, Matthew Smith
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.629852

Exploration of Intrinsic Microbial Community Modulators in the Rice Endosphere Indicates a Key Role of Distinct Bacterial Taxa Across Different Cultivars
Cited by: 7
Author(s): Pei Wang, Xiao Kong, Hongsong Chen, Yutao Xiao, Huijun Liu, Xiaojuan Li, Zhuo Zhang, Xinqiu Tan, Diandong Wang, Decai Jin, Ye Deng, Tomislav Cernava
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26165109

Crop Yield and Essential Oil Composition of Two Thymus vulgaris Chemotypes along Three Years of Organic Cultivation in a Hilly Area of Central Italy
Cited by: 7
Author(s): Basma Najar, Luisa Pistelli, Benedetta Ferri, Luciana Gabriella Angelini, Silvia Tavarini
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0085825

Changes in Fish Assemblages following the Establishment of a Network of No-Take Marine Reserves and Partially-Protected Areas
Cited by: 50
Author(s): Brendan P. Kelaher, Melinda A. Coleman, Allison Broad, Matthew J. Rees, Alan Jordan, Andrew R. Davis
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0100788

Evidence of Season-Dependency in Vegetation Effects on Macrofauna in Temperate Seagrass Meadows (Baltic Sea)
Cited by: 33
Author(s): Maria Włodarska‐Kowalczuk, Emilia Jankowska, Lech Kotwicki, Piotr Bałazy
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2019.03062

The Preliminary Development of an in vitro Poultry Cecal Culture Model to Evaluate the Effects of Original XPCTM for the Reduction of Campylobacter jejuni and Its Potential Effects on the Microbiota
Cited by: 14
Author(s): Kristina M. Feye, Peter M. Rubinelli, W. Evan Chaney, Hilary O. Pavlidis, Michael H. Kogut, Steven C. Ricke
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-91783-2

Diversity and interactions among triatomine bugs, their blood feeding sources, gut microbiota and Trypanosoma cruzi in the Sierra Nevada de Santa Marta in Colombia
Cited by: 11
Author(s): Claribel Murillo-Solano, Jaime López-Domínguez, Rafael Góngora, Andres Rojas Gulloso, José A. Usme-Ciro, Erick Perdomo-Balaguera, Claudia Herrera, Gabriel Parra-Henao, Eric Dumonteil
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0127367

Living on the Edge: Settlement Patterns by the Symbiotic Barnacle Xenobalanus globicipitis on Small Cetaceans
Cited by: 17
Author(s): Juan M. Carrillo, Robin M. Overstreet, Juan Antonio Raga, Francisco Javier Aznar
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2020.01403

Repeated Inoculation of Young Calves With Rumen Microbiota Does Not Significantly Modulate the Rumen Prokaryotic Microbiota Consistently but Decreases Diarrhea
Cited by: 18
Author(s): Dengpan Bu, Xin Zhang, Lu Ma, Tansol Park, Lingling Wang, Mengzhi Wang, Jianchu Xu, Zhongtang Yu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0051505

An Apparent Trade-Off between Direct and Signal-Based Induced Indirect Defence against Herbivores in Willow Trees
Cited by: 12
Author(s): Kinuyo Yoneya, Masayoshi Uefune, Junji Takabayashi
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2017.00175

Diversity and Distribution of Freshwater Aerobic Anoxygenic Phototrophic Bacteria across a Wide Latitudinal Gradient
Cited by: 25
Author(s): Isabel Ferrera, Hugo Sarmento, John C. Priscu, Amy Chiuchiolo, José M. González, Hans‐Peter Grossart
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.00015

Distribution of Archaeal Communities along the Coast of the Gulf of Finland and Their Response to Oil Contamination
Cited by: 25
Author(s): Lijuan Yan, Dan Yu, Nan Hui, Eve Naanuri, Signe Viggor, А. Б. Гафаров, С. Л. Соколов, Ain Heinaru, Martin Romantschuk
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0195862

Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation
Cited by: 5
Author(s): Norulhuda Mohamed Ramli, Christos Giatsis, Fatimah Md. Yusoff, J.A.J. Verreth, Marc Verdegem
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0020190

Gradients in the Number of Species at Reef-Seagrass Ecotones Explained by Gradients in Abundance
Cited by: 15
Author(s): Fernando Tuya, Mathew A. Vanderklift, Thomas Wernberg, Mads S. Thomsen
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0155055

Bacterial Diversity and Community Structure in Korean Ginseng Field Soil Are Shifted by Cultivation Time
Cited by: 25
Author(s): Ngọc-Lan Nguyen, Yeon-Ju Kim, Van-An Hoang, Sathiyamoorthy Subramaniyam, Jong-Pyo Kang, Chang Ho Kang, Deok‐Chun Yang
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-91448-0

Major ocean currents may shape the microbiome of the topshell Phorcus sauciatus in the NE Atlantic Ocean
Cited by: 5
Author(s): Ricardo Sousa, Joana Vasconcelos, Iván Vera-Escalona, J. M. P. Q. Delgado, Mafalda Freitas, José A. González, Rodrigo Riera
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.00054

High-Level PM2.5/PM10 Exposure Is Associated With Alterations in the Human Pharyngeal Microbiota Composition
Cited by: 31
Author(s): Tian Qin, Furong Zhang, Haijian Zhou, Hao Ren, Yijun Du, Shengnan Liang, Fei Wang, Lihong Cheng, Xuguang Xie, Aoming Jin, Yangfeng Wu, Jinxing Zhao, Jianguo Xu
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.00413

Distributions of Extracellular Peptidases Across Prokaryotic Genomes Reflect Phylogeny and Habitat
Cited by: 47
Author(s): Trang T. H. Nguyen, David D. Myrold, Robert F. Mueller
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0146391

Recovery Trends of Commercial Fish: The Case of an Underperforming Mediterranean Marine Protected Area
Cited by: 13
Author(s): Stefano Marra, Stefania Coppa, Andrea Camedda, Carlotta Mazzoldi, Francesco Wrachien, Giorgio Massaro, Giuseppe Andrea de Lucia
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-91927-4

Abyssal deposit feeders are secondary consumers of detritus and rely on nutrition derived from microbial communities in their guts
Cited by: 7
Author(s): Sonia Romero-Romero, Elizabeth Christina Miller, Jesse A. Black, Brian N. Popp, Jeffrey C. Drazen
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules24152818

Floral Scent Variation in the Heterostylous Species Gelsemium sempervirens
Cited by: 11
Author(s): Bettie Obi Johnson, Annette M. Golonka, Austin Blackwell, I. M. Vázquez, Nigel Wolfram
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.01803

The Association Between Inflammaging and Age-Related Changes in the Ruminal and Fecal Microbiota Among Lactating Holstein Cows
Cited by: 16
Author(s): Guoxing Zhang, Yachun Wang, Hanpeng Luo, Qiu Wan-hua, Hai-Liang Zhang, Lirong Hu, Yajing Wang, Ganghui Dong, Gang Guo
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2016.01894

NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient
Cited by: 31
Author(s): C. Ryan Penton, Caiyun Yang, Liyou Wu, Qiong Wang, Jin Zhang, Feifei Liu, Yujia Qin, Ye Deng, Christopher L. Hemme, Tao Zheng, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.00808

Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development
Cited by: 19
Author(s): Pierre Methou, Iván Hernández-Ávila, Johanne Aubé, Valérie Cueff-Gauchard, Nicolas Gayet, Louis Amand, Bruce Shillito, Florence Pradillon, Marie-Anne Cambon-Bonavita
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.722626

Fungi-Bacteria Associations in Wilt Diseased Rhizosphere and Endosphere by Interdomain Ecological Network Analysis
Cited by: 14
Author(s): Lin Tan, Weiai Zeng, Yansong Xiao, Pengfei Li, Shuhang Gu, Shaolong Wu, Zhengguang Zhai, Kai Feng, Ye Deng, Qiulong Hu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2021.657754

Venomous Snakes Reveal Ecological and Phylogenetic Factors Influencing Variation in Gut and Oral Microbiomes
Cited by: 11
Author(s): Sierra N. Smith, Timothy J. Colston, Cameron D. Siler
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.617066

Do Long-Term Conservation Pasture Management Practices Influence Microbial Diversity and Antimicrobial Resistant Genes in Runoff?
Cited by: 2
Author(s): Yichao Yang, Amanda J. Ashworth, Lisa M. Durso, Mary C. Savin, Jennifer M. DeBruyn, Kimberly J. Cook, P. Moore, Phillip R. Owens
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0154776

Towards Integrated Multi-Trophic Aquaculture: Lessons from Caprellids (Crustacea: Amphipoda)
Cited by: 29
Author(s): José M. Guerra-García, Ismael Hachero‐Cruzado, Pablo González-Romero, Pablo Jiménez‐Prada, Christopher Cassell, Macarena Ros
Software Mentions: 1
Published: over 10 years ago

10.1038/s41396-020-00836-3

Bacterial microbiota similarity between predators and prey in a blue tit trophic network
Cited by: 14
Author(s): Hélène Dion-Phénix, Anne Charmantier, Christophe de Franceschi, Geneviève Bourret, Steven W. Kembel, Denis Réale
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01278

Latitudinal Variation in the Molecular Diversity and Community Composition of Symbiodiniaceae in Coral From the South China Sea
Cited by: 40
Author(s): Biao Chen, Kefu Yu, Jiayuan Liang, Wen Huang, Guanghua Wang, Hongfei Su, Zhenjun Qin, Xueyong Huang, Zhiyi Pan, Wenwen Luo, Yingxin Luo, Yinghui Wang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0094647

Mechanisms Influencing the Spread of a Native Marine Alga
Cited by: 11
Author(s): Dilys Zhang, Tim M. Glasby, Peter J. Ralph, Paul E. Gribben
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0055675

Richness and Composition of Niche-Assembled Viral Pathogen Communities
Cited by: 31
Author(s): Eric W. Seabloom, Elizabeth T. Borer, Catherine Lacroix, Charles E. Mitchell, Alison G. Power
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2020.612135

Active Anaerobic Archaeal Methanotrophs in Recently Emerged Cold Seeps of Northern South China Sea
Cited by: 8
Author(s): Tingting Zhang, Xu Xiao, Songze Chen, Jing Zhao, Zongheng Chen, J. Feng, Qianyong Liang, Tommy J. Phelps, Chuanlun Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01122

Blood Microbial Communities During Pregnancy Are Associated With Preterm Birth
Cited by: 20
Author(s): Young Ah You, Jae Young Yoo, Eun Jin Kwon, Young Ju Kim
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0245219

Hepatic steatosis relates to gastrointestinal microbiota changes in obese girls with polycystic ovary syndrome
Cited by: 12
Author(s): Beza Jobira, Daniel N. Frank, Lori Silveira, Laura Pyle, Megan M. Kelsey, Yesenia Garcia‐Reyes, Charles E. Robertson, Diana Ir, Kristen J. Nadeau, Melanie Cree‐Green
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.00028

Spring Water of an Alpine Karst Aquifer Is Dominated by a Taxonomically Stable but Discharge-Responsive Bacterial Community
Cited by: 21
Author(s): Domenico Savio, Philipp Stadler, Georg H. Reischer, Katalin Demeter, Rita Linke, Alfred Paul Blaschke, Robert L. Mach, Alexander K. T. Kirschner, Hermann Stadler, Andreas H. Farnleitner
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00176

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core
Cited by: 61
Author(s): D. L. Leite, Pedro N. Leão, Amana Garrido, Ulysses Lins, Henrique F. Santos, Débora O. Pires, Clovis B. Castro, Jan Dirk van Elsas, Carla Zilberberg, Alexandre Soares Rosado, Raquel S. Peixoto
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms9010068

Comparative Analysis of Bacterial Communities in Lutzomyia ayacuchensis Populations with Different Vector Competence to Leishmania Parasites in Ecuador and Peru
Cited by: 5
Author(s): Ahmed Tabbabi, Shinya Watanabe, Daiki Mizushima, Abraham G. Cáceres, Eduardo A. Gómez, Daisuke Yamamoto, Longzhu Cui, Yoshihisa Hashiguchi, Hirotomo Kato
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0171715

Variations in the structural and functional diversity of zooplankton over vertical and horizontal environmental gradients en route to the Arctic Ocean through the Fram Strait
Cited by: 24
Author(s): Marta Głuchowska, Emilia Trudnowska, Ilona Goszczko, A. M. Kubiszyn, Katarzyna Błachowiak‐Samołyk, Waldemar Walczowski, Sławomir Kwaśniewski
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0173968

Implication of the intestinal microbiome as a potential surrogate marker of immune responsiveness to experimental therapies in autoimmune diabetes
Cited by: 7
Author(s): James C. Needell, Charles A. Dinarello, Diana Ir, Charles E. Robertson, Sarah Ryan, Miranda Kroehl, Daniel N. Frank, Danny Zipris
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-89896-9

Alterations in gut microbiota linked to provenance, sex, and chronic wasting disease in white-tailed deer (Odocoileus virginianus)
Cited by: 12
Author(s): David Minich, Christopher Madden, Morgan V. Evans, Gregory A. Ballash, Daniel J. Barr, Keith P. Poulsen, Patricia M. Dennis, Vanessa L. Hale
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms8111828

Phosphorus Reduces Negative Effects of Nitrogen Addition on Soil Microbial Communities and Functions
Cited by: 25
Author(s): Zongwei Xia, Jingyi Yang, Changpeng Sang, Xu Wang, Lin Sun, Ping Jiang, Chao Wang, Edith Bai
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-92796-7

Minor alterations in the intestinal microbiota composition upon Rotavirus infection do not affect susceptibility to DSS colitis
Cited by: 2
Author(s): Kedir Hussen Hamza, Emma Dunér, Isabel Ulmert, Armando Arias, Daniel Sorobetea, Katharina Lahl
Software Mentions: 1
Published: about 5 years ago

10.1186/s40168-019-0646-1

Systemic translocation of Staphylococcus drives autoantibody production in HIV disease
Cited by: 21
Author(s): Zhenwu Luo, Min Li, Yongxia Wu, Zhefeng Meng, Lisa Martin, Lumin Zhang, Elizabeth Ogunrinde, Zejun Zhou, Shenghui Qin, Zhuang Wan, Maria Anna Julia Westerink, Stephanie Warth, Hui Liu, Ping Jin, David F. Stroncek, Quan-Zhen Li, Ena Wang, Xueling Wu, Sonya L. Heath, Zihai Li, Alexander V. Alekseyenko, Wei Jiang
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.01655

Fecal and Mucosal Microbiota Profiling in Irritable Bowel Syndrome and Inflammatory Bowel Disease
Cited by: 127
Author(s): Alessandra Lo Presti, Francesca Zorzi, Federica Del Chierico, Annamaria Altomare, Silvia Cocca, Alessandra Avola, Fabiola De Biasio, Alessandra Russo, Eleonora Cella, Sofia Reddel, Emma Calabrese, Livia Biancone, Giovanni Monteleone, Michele Cicala, Silvia Angeletti, Massimo Ciccozzi, Lorenza Putignani, Michele Pier Luca Guarino
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0161919

Spatio-Temporal Variation in Effects of Upwelling on the Fatty Acid Composition of Benthic Filter Feeders in the Southern Benguela Ecosystem: Not All Upwelling Is Equal
Cited by: 17
Author(s): Eleonora Puccinelli, Christopher D. McQuaid, Margaux Noyon
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0096798

Depth and Medium-Scale Spatial Processes Influence Fish Assemblage Structure of Unconsolidated Habitats in a Subtropical Marine Park
Cited by: 29
Author(s): Arthur L. Schultz, Hamish A. Malcolm, Daniel J Bucher, Michelle Linklater, Stephen Smith
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2018.01631

Fecal Microbiota Transplantation Is Associated With Reduced Morbidity and Mortality in Porcine Circovirus Associated Disease
Cited by: 34
Author(s): Megan C. Niederwerder, Laura A. Constance, Raymond R. R. Rowland, Waseem Abbas, Samodha C. Fernando, M. L. Potter, Maureen A. Sheahan, Thomas E. Burkey, Richard Hesse, Ada G. Cino‐Ozuna
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0100300

The Genetic Structure of Staphylococcus aureus Populations from the Southwest Pacific
Cited by: 21
Author(s): Stephen Ritchie, Mark G. Thomas, Paul B. Rainey
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0032817

Forestry Alters Foraging Efficiency and Crop Contents of Aphid-Tending Red Wood Ants, Formica aquilonia
Cited by: 18
Author(s): Therese Johansson, Heloise Gibb
Software Mentions: 1
Published: over 14 years ago

10.3389/fmicb.2019.01594

Microbial Communities in a Flow-Through Fish Farm for Lumpfish (Cyclopterus lumpus L.) During Healthy Rearing Conditions
Cited by: 19
Author(s): Irene Roalkvam, Karine Drønen, Helge K. Dahle, Heidrun I. Wergeland
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.02897

Comparative Microbiome Signatures and Short-Chain Fatty Acids in Mouse, Rat, Non-human Primate, and Human Feces
Cited by: 155
Author(s): Ravinder Nagpal, Shaohua Wang, Leah C. Solberg Woods, Osborne Seshie, Stephanie T. Chung, Carol A. Shively, Thomas C. Register, Suzanne Craft, Donald A. McClain, Hariom Yadav
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.00757

Meal Regularity Plays a Role in Shaping the Saliva Microbiota
Cited by: 5
Author(s): Jannina Viljakainen, Sajan C. Raju, Heli Viljakainen, Rejane Augusta de Oliveira Figueiredo, Eva Roos, Elisabete Weiderpass, Trine B. Rounge
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0147098

Relative Importance of Biotic and Abiotic Forces on the Composition and Dynamics of a Soft-Sediment Intertidal Community
Cited by: 32
Author(s): Travis G. Gerwing, David Drolet, Diana J. Hamilton, Myriam A. Barbeau
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms8091363

Faecal Microbiota of Dogs Offered a Vegetarian Diet with or without the Supplementation of Feather Meal and either Cornmeal, Rye or Fermented Rye: A Preliminary Study
Cited by: 6
Author(s): Julia Hankel, Amr Abd El‐Wahab, Richard Grone, Birgit Keller, Eric Galvez, Till Strowig, Christian Visscher
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0130823

The Micronesia Challenge: Assessing the Relative Contribution of Stressors on Coral Reefs to Facilitate Science-to-Management Feedback
Cited by: 45
Author(s): Peter Houk, Rodney Camacho, Steven Johnson, Matthew McLean, Selino Maxin, J. H Anson, Eugene Joseph, Osamu Nedlic, Marston Luckymis, Katrina Adams, Don Hess, Emma Kabua, Anthony Yalon, Eva Buthung, Curtis Graham, Trina Leberer, Brett M. Taylor, Robert van Woesik
Software Mentions: 1
Published: about 11 years ago

10.1128/mSystems.00160-18

Helminth-Based Product and the Microbiome of Mice with Lupus
Cited by: 19
Author(s): Hadar Neuman, Hadar Mor, Tomer Bashi, Or Givol, Abdulla Watad, Asaf Shemer, Alexander Volkov, Iris Barshack, Mati Fridkin, Yehuda Shoenfeld, Omry Koren
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0103179

Spatio-Temporal Analyses of Symbiodinium Physiology of the Coral Pocillopora verrucosa along Large-Scale Nutrient and Temperature Gradients in the Red Sea
Cited by: 85
Author(s): Yvonne Sawall, Abdulmohsin Al-Sofyani, Eulalia Banguera-Hinestroza, Christian R. Voolstra
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2020.00491

Spatio-Temporal and Cultivar-Dependent Variations in the Cannabis Microbiome
Cited by: 23
Author(s): Dominique Comeau, Amy Novinscak, David L. Joly, Martin Filion
Software Mentions: 1
Published: over 6 years ago

10.1128/mSystems.00278-18

Sequential Changes in the Mesenteric Lymph Node Microbiome and Immune Response during Cirrhosis Induction in Rats
Cited by: 12
Author(s): Alba Santiago, Elisabet Sánchez, Allison Clark, Marta Pozuelo, Miguel Calvo, Francisca Yáñez, Guillaume Sarrabayrouse, Lídia Perea, Sílvia Vidal, Alberto Gallardo, Carlos Guarner, Germán Soriano, Chaysavanh Manichanh
Software Mentions: 1
Published: over 7 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning PERMANOVA 6,292