Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.1038/s41598-020-77764-x
Performance of polychaete assisted sand filters under contrasting nutrient loads in an integrated multi-trophic aquaculture (IMTA) system
Cited by: 14
Author(s): Daniel Jerónimo, Ana I. Lillebø, Andreia Santos, Javier Cremades, Ricardo Calado
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0250571
Comparison of bacterial and archaeal communities in two fertilizer doses and soil compartments under continuous cultivation system of garlic
Cited by: 1
Author(s): Jing Zhou, Yong Kong, Wenjing Zhao, Guangshan Wei, Qingfeng Wang, Lifeng Ma, Taotao Wang, Fengyue Shu, Weilai Sha
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-78181-w
Early evidence of a shift in juvenile fish communities in response to conditions in nursery areas
Cited by: 6
Author(s): Sanja Matić‐Skoko, Dario Vrdoljak, Hana Uvanović, Mišo Pavičić, Pero Tutman, Dubravka Bojanić Varezić
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0061349
Macrofaunal Responses to Edges Are Independent of Habitat-Heterogeneity in Experimental Landscapes
Cited by: 7
Author(s): Miguel G. Matias, Ross A. Coleman, Dieter F. Hochuli, A. J. Underwood
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0026353
High Levels of Sediment Contamination Have Little Influence on Estuarine Beach Fish Communities
Cited by: 22
Author(s): Andrew C. McKinley, Katherine A. Dafforn, Matthew D. Taylor, Emma L. Johnston
Software Mentions: 1
Published: about 13 years ago
10.1038/s41598-020-78483-z
Vegetation structure determines the spatial variability of soil biodiversity across biomes
Cited by: 5
Author(s): Jorge Durán, Manuel Delgado‐Baquerizo
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-78752-x
Early immune innate hallmarks and microbiome changes across the gut during Escherichia coli O157: H7 infection in cattle
Cited by: 12
Author(s): Mariano Larzábal, Wanderson Marques da Silva, Anmol Multani, Lucas Vagnoni, D.P. Moore, Maia Solange Marin, Nahuel A Riviere, Fernando Delgado, Daniel A. Vilte, Matias Romero Victorica, Tao Ma, Luo Le Guan, Paola Talia, Angel Cataldi, Eduardo R. Cobo
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0203732
Montastraea cavernosa corallite structure demonstrates distinct morphotypes across shallow and mesophotic depth zones in the Gulf of Mexico
Cited by: 15
Author(s): Michael S. Studivan, Gillian Milstein, Joshua D. Voss
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-77054-6
A core microbiota dominates a rich microbial diversity in the bovine udder and may indicate presence of dysbiosis
Cited by: 33
Author(s): Davide Porcellato, Roger Meisal, Alberto Bombelli, Judith Narvhus
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0201866
Effects of red clover isoflavones on tall fescue seed fermentation and microbial populations in vitro
Cited by: 10
Author(s): Emily A Melchior, Jason K Smith, Liesel G Schneider, J. T. Mulliniks, Gary E. Bates, Z. D. McFarlane, Michael D. Flythe, J. L. Klotz, Jack P. Goodman, Ji H, Phillip R. Myer
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0119733
Insect-Flower Interaction Network Structure Is Resilient to a Temporary Pulse of Floral Resources from Invasive Rhododendron ponticum
Cited by: 31
Author(s): Erin Jo Tiedeken, Jane C. Stout
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0098802
Anthropogenic Disturbance and Biodiversity of Marine Benthic Communities in Antarctica: A Regional Comparison
Cited by: 38
Author(s): Jonathan S. Stark, Stacy L. Kim, John S. Oliver
Software Mentions: 1
Published: over 10 years ago
10.7717/peerj.7463
Plant host and drought shape the root associated fungal microbiota in rice
Cited by: 26
Author(s): Beatriz Andreo-Jiménez, Philippe Vandenkoornhuyse, Amandine Lê Van, Arvid Heutinck, Marie Duhamel, Niteen N. Kadam, Krishna Jagadish, Carolien Ruyter-Spira, Harro J. Bouwmeester
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0117723
Beyond Symbiosis: Cleaner Shrimp Clean Up in Culture
Cited by: 18
Author(s): Thane A. Militz, Kate S. Hutson
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0255137
Shift of bacterial communities in heavy metal-contaminated agricultural land during a remediation process
Cited by: 18
Author(s): Chi‐Chun Huang, Chen-Jui Liang, Ting-I Yang, Jiann‐Long Chen, Wei-Kuang Wang
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-80537-1
Anthropogenic interferences lead to gut microbiome dysbiosis in Asian elephants and may alter adaptation processes to surrounding environments
Cited by: 21
Author(s): Mohamed Abdallah Mohamed Moustafa, Hla Myet Chel, May June Thu, Saw Bawm, Lat Lat Htun, Mar Mar Win, Zaw Min Oo, Natsuo Ohsawa, Mirkka Lahdenperä, Wessam Mohamed Ahmed Mohamed, Kimihito Ito, Nariaki Nonaka, Ryo Nakao, Ken Katakura
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-79793-y
Centrifugation does not remove bacteria from the fat fraction of human milk
Cited by: 6
Author(s): Lisa F. Stinson, Jie Ma, Alethea Rea, Michael Dymock, Donna T. Geddes
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-79576-5
Impacts of streamflow alteration on benthic macroinvertebrates by mini-hydro diversion in Sri Lanka
Cited by: 7
Author(s): Dinuke Munasinghe, M. Najim, Silvia Quadroni, Muneeb M. Musthafa
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-80612-7
Novel approach to enhance coastal habitat and biotope mapping with drone aerial imagery analysis
Cited by: 21
Author(s): João Gama Monteiro, Jesús Lorenzo Jiménez, Francesca Gizzi, Petr Přikryl, Jonathan S. Lefcheck, Ricardo S. Santos, João Canning‐Clode
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.10260
Tracking the dynamics of individual gut microbiome of sea cucumber <i>Apostichopus japonicus</i> during gut regeneration
Cited by: 5
Author(s): Yasushi Yamazaki, Yuichi Sakai, Juanwen Yu, Sayaka Mino, Tomoo Sawabe
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0214660
High intensity interval training promotes total and visceral fat mass loss in obese Zucker rats without modulating gut microbiota
Cited by: 26
Author(s): Florie Maillard, Emilie Vazeille, Pierre Sauvanet, Pascal Sirvent, Lydie Combaret, Antoine Sourdrille, Vivien Chavanelle, Richard Bonnet, Yolanda F. Otero, Geoffrey Delcros, Nicolas Barnich, Nathalie Boisseau
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0100276
The Relationship between Early Growth and Survival of Hatchling Saltwater Crocodiles (Crocodylus porosus) in Captivity
Cited by: 16
Author(s): Matthew L. Brien, Grahame J. W. Webb, Keith A. McGuinness, Keith A. Christian
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-020-80637-y
Chronic stress and corticosterone exacerbate alcohol-induced tissue injury in the gut-liver-brain axis
Cited by: 33
Author(s): Pradeep Kumar Shukla, Avtar S. Meena, Kesha Dalal, Cherie Canelas, Geetha Samak, Joseph F. Pierre, Radhakrishna Rao
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0239895
Spatial patterns of continental shelf faunal community structure along the Western Antarctic Peninsula
Cited by: 10
Author(s): Alan M. Friedlander, Whitney Goodell, Pelayo Salinas‐de‐León, Enric Ballesteros, Eric Berkenpas, Andrea P Capurro, César Cárdenas, Mathias Hüne, Cristian Lagger, Mauricio F. Landaeta, Alex Muñoz, Mercedes Santos, Alan Turchik, Rodolfo Werner, Enric Sala
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0075710
Developmental Stage of Parasites Influences the Structure of Fish-Parasite Networks
Cited by: 38
Author(s): Sybelle Bellay, Edson Fontes de Oliveira, Mário Almeida‐Neto, Dilermando P. Lima-Júnior, Ricardo Massato Takemoto, José L. Luque
Software Mentions: 1
Published: about 11 years ago
10.1038/s41598-020-78295-1
Comparison of oral microbiome profiles in 18-month-old infants and their parents
Cited by: 18
Author(s): Ryutaro Jo, Kazuma Yama, Yuto Aita, Kimiko Tsutsumi, Chikako Ishihara, Masato Maruyama, Kaori Takeda, Eiji Nishinaga, K Shibasaki, Seiji Morishima
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.6879
A citizen science approach to evaluating US cities for biotic homogenization
Cited by: 11
Author(s): Misha Leong, Michelle Trautwein
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0225079
Comparison of the fecal, cecal, and mucus microbiome in male and female mice after TNBS-induced colitis
Cited by: 54
Author(s): Ariangela J. Kozik, Cindy H. Nakatsu, Hyonho Chun, Yava Jones‐Hall
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0140725
Characterization of Bacterial Communities Associated with the Tyrian Purple Producing Gland in a Marine Gastropod
Cited by: 13
Author(s): Ajit Kumar Ngangbam, Abdul Baten, Daniel Le Waters, Steve W Whalan, Kirsten Benkendorff
Software Mentions: 1
Published: about 9 years ago
10.7717/peerj.5802
Influenced but not determined by historical events: genetic, demographic and morphological differentiation in<i>Heleobia ascotanensis</i>from the Chilean Altiplano
Cited by: 11
Author(s): Moisés A. Valladares, Marco A. Méndez, Gonzalo A. Collado
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.8435
Growth dynamics in <i>Acropora cervicornis</i> and<i> A. prolifera</i> in southwest Puerto Rico
Cited by: 6
Author(s): Ernesto Weil, Nicholas M. Hammerman, Rebecca L. Becicka, Juan J. Cruz‐Motta
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0217165
The composition of bacterial communities associated with plastic biofilms differs between different polymers and stages of biofilm succession
Cited by: 176
Author(s): Maria Pinto, Teresa M. Langer, Thorsten Hüffer, Thilo Hofmann, Gerhard J. Herndl
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0026695
The Response of Thalassiosira pseudonana to Long-Term Exposure to Increased CO2 and Decreased pH
Cited by: 102
Author(s): Katharine J. Crawfurd, John A. Raven, Glen Wheeler, Emily J. Baxter, Ian Joint
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0188806
Principal component and discriminant analyses as powerful tools to support taxonomic identification and their use for functional and phylogenetic signal detection of isolated fossil shark teeth
Cited by: 36
Author(s): Giuseppe Marramà, Jürgen Kriwet
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0092193
Exercise Prevents Weight Gain and Alters the Gut Microbiota in a Mouse Model of High Fat Diet-Induced Obesity
Cited by: 425
Author(s): Christian C. Evans, Kathy J. LePard, Jeff Kwak, Mary C. Stancukas, Samantha Laskowski, Joseph D. Dougherty, Laura J. Moulton, A. Glawe, Yunwei Wang, Vanessa Leone, Dionysios A. Antonopoulos, Dan Smith, Eugene B. Chang, Mae J. Ciancio
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0212842
Benthic community succession on artificial and natural coral reefs in the northern Gulf of Aqaba, Red Sea
Cited by: 22
Author(s): Emily Higgins, Robert Eric Scheibling, Kelsey M. Desilets, Anna Meta×as
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-021-82071-0
Phytoplankton taxonomic and functional diversity patterns across a coastal tidal front
Cited by: 15
Author(s): Pierre Ramond, Raffaele Siano, Sophie Schmitt, Colomban de Vargas, Louis Marié, Laurent Mémery, Marc Sourisseau
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.12084
Trophic niches reflect compositional differences in microbiota among Caribbean sea urchins
Cited by: 7
Author(s): Ruber Rodríguez-Barreras, Eduardo Tosado-Rodríguez, Filipa Godoy-Vitorino
Software Mentions: 1
Published: about 3 years ago
10.7717/peerj.11090
A quantitative comparison of towed-camera and diver-camera transects for monitoring coral reefs
Cited by: 3
Author(s): Anna K. Cresswell, Nicole M. Ryan, Andrew Heyward, Adam N. H. Smith, Jamie Colquhoun, Mark Case, Matthew J. Birt, Mark Chinkin, Mathew Wyatt, Ben Radford, Paul Costello, James Gilmour
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0043063
Copepods in Turbid Shallow Soda Lakes Accumulate Unexpected High Levels of Carotenoids
Cited by: 17
Author(s): Tobias Schneider, Alois Herzig, Karin A. Koinig, Rubén Sommaruga
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0174855
A coral-algal phase shift in Mesoamerica not driven by changes in herbivorous fish abundance
Cited by: 67
Author(s): Jesús Ernesto Arias‐González, Tak Fung, Robert M. Seymour, Joaquín Rodrigo Garza-Pérez, Gilberto Acosta‐González, Yves‐Marie Bozec, Craig R. Johnson
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-82768-2
The rhizosphere microbiome plays a role in the resistance to soil-borne pathogens and nutrient uptake of strawberry cultivars under field conditions
Cited by: 80
Author(s): Cristina Lazcano, Eric S. Boyd, Gerald J. Holmes, Shashika S. Hewavitharana, Alexis L. Pasulka, Kelly Ivors
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-82181-9
16S rRNA gene-based microbiome analysis identifies candidate bacterial strains that increase the storage time of potato tubers
Cited by: 13
Author(s): Franziska Buchholz, Robert R. Junker, Abdul Samad, Livio Antonielli, Nataša Sarić, Tanja Kostić, Angela Sessitsch, Birgit Mitter
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0022950
Transcriptome Fingerprinting Analysis: An Approach to Explore Gene Expression Patterns in Marine Microbial Communities
Cited by: 5
Author(s): Montserrat Coll-Lladó, Silvia G. Acinas, Cristina Pujades, Carlos Pedrós-Alió
Software Mentions: 1
Published: over 13 years ago
10.1038/s41598-021-82823-y
Antibiotic-resistant bacteria and gut microbiome communities associated with wild-caught shrimp from the United States versus imported farm-raised retail shrimp
Cited by: 13
Author(s): Laxmi Sharma, Ravinder Nagpal, Charlene R. Jackson, Dhruv Patel, Prashant Singh
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.8428
Lack of recovery of the long-spined sea urchin <i>Diadema antillarum</i> Philippi in Puerto Rico 33 years after the Caribbean-wide mass mortality
Cited by: 10
Author(s): Evan Tuohy, Christina Wade, Ernesto Weil
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0207395
Functional diversity and nutritional content in a deep-sea faunal assemblage through total lipid, lipid class, and fatty acid analyses
Cited by: 29
Author(s): Camilla Parzanini, Christopher C. Parrish, Jean‐François Hamel, Annie Mercier
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0241183
Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high pCO2
Cited by: 6
Author(s): Lisa T. Crummett
Software Mentions: 1
Published: about 4 years ago
10.1038/s41396-019-0486-9
Chemosymbiotic bivalves contribute to the nitrogen budget of seagrass ecosystems
Cited by: 23
Author(s): Ulisse Cardini, Marco Bartoli, Sebastian Lücker, Maria Mooshammer, Julia Polzin, Raymond W. Lee, Vesna Micić, Thilo Hofmann, Miriam Weber, Jillian M. Petersen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-82540-6
Reduced nest development of reared Bombus terrestris within apiary dense human-modified landscapes
Cited by: 6
Author(s): Ivan Meeus, Laurian Parmentier, Matti Pisman, Dirk C. de Graaf, Guy Smagghe
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.8523
Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols
Cited by: 45
Author(s): Hamza Mbareche, Marc Veillette, Guillaume J. Bilodeau, Caroline Duchaine
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-021-82847-4
Optimal fishing effort benefits fisheries and conservation
Cited by: 6
Author(s): Adam Rees, Emma V. Sheehan, Martin J. Attrill
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0227362
Morphological consequences of artificial cranial deformation: Modularity and integration
Cited by: 8
Author(s): Thomas A. Püschel, Martin Frieß, Germán Manríquez
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0189930
Marine biodiversity at the end of the world: Cape Horn and Diego Ramírez islands
Cited by: 30
Author(s): Alan M. Friedlander, Enric Ballesteros, Tom W. Bell, Jonatha Giddens, Brad Henning, Mathias Hüne, Alex Muñoz, Pelayo Salinas‐de‐León, Enric Sala
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-021-83533-1
Environmental stressors, complex interactions and marine benthic communities’ responses
Cited by: 33
Author(s): Charlotte Carrier‐Belleau, David Drolet, Christopher W. McKindsey, Philippe Archambault
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-83756-2
Impact of early-life feeding on local intestinal microbiota and digestive system development in piglets
Cited by: 22
Author(s): R. Choudhury, Anouschka Middelkoop, José Gomes de Souza, L. A. van Veen, W.J.J. Gerrits, B. Kemp, J.E. Bolhuis, Michiel Kleerebezem
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0017115
Spatial Patterns in Herbivory on a Coral Reef Are Influenced by Structural Complexity but Not by Algal Traits
Cited by: 83
Author(s): Adriana Vergés, Mathew A. Vanderklift, Christopher Doropoulos, Glenn A. Hyndes
Software Mentions: 1
Published: almost 14 years ago
10.7717/peerj.10925
Conservation actions and ecological context: optimizing coral reef local management in the Dominican Republic
Cited by: 5
Author(s): Camilo Cortés-Useche, Edwin A. Hernández-Delgado, Johanna Calle-Triviño, Rita Sellares Blasco, Victor Galván, Jesús Ernesto Arias‐González
Software Mentions: 1
Published: over 3 years ago
10.1101/2020.11.19.20234229
Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment
Cited by: 12
Author(s): Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Promi Das, Shi Huang, Kalen Cantrel, Lingjing Jiang, Cameron Martino, Rachel E. Diner, Gibraan Rahman, Daniel McDonald, George E. Armstrong, Sho M. Kodera, S. De Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana Salas Garcia, Leslie Chiang, Rodolfo A. Salido, Justin P. Shaffer, MacKenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L. Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J. Torriani, Rob Knight, Jack A. Gilbert, Daniel A. Sweeney, Sarah Allard
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0133974
Inferring Phytoplankton, Terrestrial Plant and Bacteria Bulk δ¹³C Values from Compound Specific Analyses of Lipids and Fatty Acids
Cited by: 36
Author(s): Sami J. Taipale, Elina Peltomaa, Minna Hiltunen, Roger Jones, Martin W. Hahn, Christina Biasi, Michael T. Brett
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0225845
The effect of carbohydrate sources: Sucrose, invert sugar and components of mānuka honey, on core bacteria in the digestive tract of adult honey bees (Apis mellifera)
Cited by: 22
Author(s): MA Taylor, Alastair W. Robertson, Patrick J. Biggs, Kate Richards, Daniel Fiske Jones, Shanthi G. Parkar
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0052108
Assessing Dispersal Patterns of Fish Propagules from an Effective Mediterranean Marine Protected Area
Cited by: 44
Author(s): Antonio Franco, Giovanni Coppini, J. M. Pujolar, Giulio A. De Leo, Marino Gatto, Vladyslav Lyubartsev, Paco Melià, Lorenzo Zane, Paolo Guidetti
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0108801
Reproductive Strategies of the Insidious Fish Ectoparasite, Neobenedenia sp. (Capsalidae: Monogenea)
Cited by: 27
Author(s): Truong Dinh Hoai, Kate S. Hutson
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0068533
Host-Specific Interactions with Environmental Factors Shape the Distribution of Symbiodinium across the Great Barrier Reef
Cited by: 56
Author(s): Linda Tonk, Eugenia M. Sampayo, Scarla J. Weeks, Marites Canto, Ove Hoegh‐Guldberg
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0130053
Partitioning the Relative Importance of Phylogeny and Environmental Conditions on Phytoplankton Fatty Acids
Cited by: 196
Author(s): Aaron W. E. Galloway, Monika Winder
Software Mentions: 1
Published: over 9 years ago
10.1016/j.humic.2019.100069
Gut microbiome composition and diversity are related to human personality traits
Cited by: 104
Author(s): Katerina V.‐A. Johnson
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0142409
Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison)
Cited by: 80
Author(s): Gaddy T. Bergmann, Joseph M. Craine, Michael S. Robeson, Noah Fierer
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0038552
Bacterial and Phytoplankton Responses to Nutrient Amendments in a Boreal Lake Differ According to Season and to Taxonomic Resolution
Cited by: 24
Author(s): Sari Peura, Alexander Eiler, Minna Hiltunen, Hannu Nykänen, Marja Tiirola, Roger Jones
Software Mentions: 1
Published: over 12 years ago
10.7717/peerj.8363
Osmotrophic glucose and leucine assimilation and its impact on EPA and DHA content in algae
Cited by: 3
Author(s): Elina Peltomaa, Sami J. Taipale
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0032742
The Structure of Mediterranean Rocky Reef Ecosystems across Environmental and Human Gradients, and Conservation Implications
Cited by: 266
Author(s): Enric Sala, Enric Ballesteros, Panagiotis Dendrinos, Antonio Franco, Francesco Ferretti, David G. Foley, Simonetta Fraschetti, Alan M. Friedlander, Joaquim Garrabou, Harun Güçlüsoy, Paolo Guidetti, Benjamin S. Halpern, Bernat Hereu, Alexandros A. Karamanlidis, Zafer Kızılkaya, Enrique Macpherson, Luisa Mangialajo, Simone Mariani, Fiorenza Micheli, António Pais, Kristin L. Riser, Andrew A. Rosenberg, Marta Sales, Kimberly A. Selkoe, Richard M. Starr, Fiona Tomàs, Míkel Zabala
Software Mentions: 1
Published: almost 13 years ago
10.7717/peerj.6172
Impact of inter- and intra-individual variation, sample storage and sampling fraction on human stool microbial community profiles
Cited by: 16
Author(s): Yun Kit Yeoh, Zigui Chen, Michael K. Hui, Martin C. S. Wong, Walter K.K. Ho, Miu L. Chin, Siew C. Ng, Francis K.L. Chan, Paul K.S. Chan
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-021-85396-y
Fish associations with shallow water subsea pipelines compared to surrounding reef and soft sediment habitats
Cited by: 11
Author(s): Karl D. Schramm, Michael J. Marnane, Travis S. Elsdon, Christopher M. Jones, Benjamin J. Saunders, Stephen J. Newman, Euan S. Harvey
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0092628
Depth Refuge and the Impacts of SCUBA Spearfishing on Coral Reef Fishes
Cited by: 90
Author(s): Steven J. Lindfield, Jennifer L. McIlwain, Euan S. Harvey
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-021-85484-z
Exodontia associated bacteremia in horses characterized by next generation sequencing
Cited by: 3
Author(s): Kile S. Townsend, Philip J. Johnson, Alison M. LaCarrubba, Lynn M. Martin, Aaron C. Ericsson
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85750-0
Functional profiling of COVID-19 respiratory tract microbiomes
Cited by: 21
Author(s): Niina Haiminen, Filippo Utro, Ed Seabolt, Laxmi Parida
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85897-w
Evaluation of the gut microbiome in association with biological signatures of inflammation in murine polytrauma and shock
Cited by: 6
Author(s): Sandra A. Appiah, Christine L. Foxx, Dominik Langgartner, Annette Palmer, Cristian A. Zambrano, Sonja Braumüller, Evan J. Schaefer, Ulrich Wachter, Brooke L. Elam, Peter Radermacher, Christopher E. Stamper, Jared D. Heinze, Stephanie Salazar, Amalia K. Luthens, Andrea L. Arnold, Stefan O. Reber, Markus Huber‐Lang, Christopher A. Lowry, Rebecca Halbgebauer
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-86052-1
Retinitis pigmentosa is associated with shifts in the gut microbiome
Cited by: 15
Author(s): Oksana Kutsyr, Lucía Maestre‐Carballa, Mónica Lluesma-Gomez, Manuel Martínez‐García, Nicolás Cuenca, Pedro Lax
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0218274
Exploring the impact of Helicobacter pylori on gut microbiome composition
Cited by: 66
Author(s): Nihar Ranjan Dash, Ghalia Khoder, Aml Mohamed Nada, Mohammad Tahseen Al Bataineh
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-86399-5
The endophytic microbiota of Citrus limon is transmitted from seed to shoot highlighting differences of bacterial and fungal community structures
Cited by: 16
Author(s): Teresa Faddetta, Loredana Abbate, Pasquale Alibrandi, Walter Arancio, Davide Siino, Francesco Strati, Carlotta De Filippo, Sergio Fatta Del Bosco, Francesco Carimi, Anna Maria Puglia, Massimiliano Cardinale, Giuseppe Gallo, Francesco Mercati
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0134647
Monitoring Spawning Activity in a Southern California Marine Protected Area Using Molecular Identification of Fish Eggs
Cited by: 39
Author(s): Alice E. Harada, Elise Anna Lindgren, Maiko Hermsmeier, Peter Rogowski, Eric Terrill, Ronald S. Burton
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0237874
Learning machine approach reveals microbial signatures of diet and sex in dog
Cited by: 14
Author(s): Elisa Scarsella, Bruno Stefanon, Michela Cintio, Danilo Licastro, Sandy Sgorlon, Simeone Dal Monego, Misa Sandri
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0035456
Acanthaster planci Outbreak: Decline in Coral Health, Coral Size Structure Modification and Consequences for Obligate Decapod Assemblages
Cited by: 42
Author(s): Matthieu Leray, Maxime Béraud, Arthur Anker, Yannick Chancerelle, Suzanne C. Mills
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0171456
Physiological plasticity related to zonation affects hsp70 expression in the reef-building coral Pocillopora verrucosa
Cited by: 16
Author(s): Davide Poli, Elena Fabbri, Stefano Goffredo, Valentina Airi, Silvia Franzellitti
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0086765
Patterns of the Non-Indigenous Isopod Cirolana harfordi in Sydney Harbour
Cited by: 8
Author(s): Ana B. Bugnot, Ross A. Coleman, Will F. Figueira, Ezequiel M. Marzinelli
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0224796
The gut microbiome of freshwater Unionidae mussels is determined by host species and is selectively retained from filtered seston
Cited by: 28
Author(s): Eric A. Weingarten, Carla L. Atkinson, Colin R. Jackson
Software Mentions: 1
Published: about 5 years ago
10.1038/ismej.2016.109
Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time
Cited by: 108
Author(s): Nina Dombrowski, Klaus Schlaeppi, Matthew T. Agler, Stéphane Hacquard, Eric Kemen, Ruben Garrido‐Oter, Jörg Wunder, George Coupland, Paul Schulze‐Lefert
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-021-87662-5
The non-indigenous Oithona davisae in a Mediterranean transitional environment: coexistence patterns with competing species
Cited by: 7
Author(s): Marco Pansera, Elisa Camatti, Anna Schroeder, Giacomo Zagami, A. Bergamasco
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-87767-x
Trophic indices for micronektonic fishes reveal their dependence on the microbial system in the North Atlantic
Cited by: 15
Author(s): Antonio Bode, M. Pilar Olivar, Santiago Hernández‐León
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0081910
Determining the Metabolic Footprints of Hydrocarbon Degradation Using Multivariate Analysis
Cited by: 16
Author(s): Renee J. Smith, Thomas C. Jeffries, Eric M. Adetutu, Peter G. Fairweather, James G. Mitchell
Software Mentions: 1
Published: about 11 years ago
10.1038/s41598-021-88536-6
SARS-CoV-2 does not have a strong effect on the nasopharyngeal microbial composition
Cited by: 26
Author(s): Tzipi Braun, Shiraz Halevi, Rotem Hadar, Gilat Efroni, Efrat Glick Saar, Natahan Keller, Amir Almasi‐Hashiani, Sharon Amit, Yael Haberman
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.6512
The role of juvenile hormone in regulating reproductive physiology and dominance in <i>Dinoponera quadriceps</i> ants
Cited by: 8
Author(s): Victoria C Norman, Tobias Pamminger, Fábio Santos do Nascimento, William O. Hughes
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.10857
Sheath-tailed bats (Chiroptera: Emballonuridae) from the early Pleistocene Rackham’s Roost Site, Riversleigh World Heritage Area, and the distribution of northern Australian emballonurid species
Cited by: 0
Author(s): Tyler R. King, Troy Myers, Kyle N. Armstrong, Michael Archer, Suzanne J. Hand
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41396-020-00822-9
Plant resistome profiling in evolutionary old bog vegetation provides new clues to understand emergence of multi-resistance
Cited by: 29
Author(s): Melanie M. Obermeier, Wisnu Adi Wicaksono, Julian Taffner, Alessandro Bergna, Anja Poehlein, Tomislav Cernava, Stefanie Lindstaedt, Mario Lovrić, Christina A. Müller Bogotá, Gabriele Berg
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0139444
Using Fish Population Metrics to Compare the Effects of Artificial Reef Density
Cited by: 16
Author(s): Catheline Y.M. Froehlich, Richard J. Kline
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0021195
Development of Bacterial Biofilms on Artificial Corals in Comparison to Surface-Associated Microbes of Hard Corals
Cited by: 43
Author(s): Michael Sweet, Aldo Cróquer, John C. Bythell
Software Mentions: 1
Published: over 13 years ago
10.1038/s41598-021-88094-x
Author Correction: Centrifugation does not remove bacteria from the fat fraction of human milk
Cited by: 0
Author(s): Lisa F. Stinson, Jie Ma, Alethea Rea, Michael Dymock, Donna T. Geddes
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0218227
The role of alien species on plant-floral visitor network structure in invaded communities
Cited by: 18
Author(s): Víctor Parra‐Tabla, Diego F. Angulo, Cristopher Albor, María José Campos‐Navarrete, Juan Tún-Garrido, Paula Sosenski, Conchita Alonso, Tia‐Lynn Ashman, Gerardo Arceo‐Gómez
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.10860
Social behavior of musk deer during the mating season potentially influences the diversity of their gut microbiome
Cited by: 3
Author(s): Jianmei Li, Wei Luo, Yudong Zhu, Qinlong Dai, Guoqi Liu, Chengli Zheng, Lei Zhou, Shengqiang Li, Zhu Chen, Jianming Wang, Dayong Feng, Kunlin Yang, Yang Zhang, Lifeng Zhu
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0117936
The Effect of Filamentous Turf Algal Removal on the Development of Gametes of the Coral Orbicella annularis
Cited by: 6
Author(s): Neidy P. Cetz-Navarro, Eugenio Carpizo‐Ituarte, Julio Espinoza-Ávalos, Guillermina Chee-Barragán
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0256685
High biogeographic and latitudinal variability in gastropod drilling predation on molluscs along the eastern Indian coast: Implications on the history of fossil record of drillholes
Cited by: 1
Author(s): Subhronil Mondal, Hindolita Chakraborty, Sandip Saha, Sahana Dey, Deepjay Sarkar
Software Mentions: 1
Published: over 3 years ago