Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.1186/s12866-021-02286-z
Disturbed microbial ecology in Alzheimer’s disease: evidence from the gut microbiota and fecal metabolome
Cited by: 29
Author(s): Jianxiong Xi, Ding Ding, Huiwei Zhu, Ruru Wang, Feng Su, Wanqing Wu, Zhenxu Xiao, Xiaoniu Liang, Qianhua Zhao, Zhen Hong, Hua Fu, Qianyi Xiao
Software Mentions: 1
Published: over 3 years ago
10.1186/s12866-018-1211-y
Bacterial DNA patterns identified using paired-end Illumina sequencing of 16S rRNA genes from whole blood samples of septic patients in the emergency room and intensive care unit
Cited by: 3
Author(s): Monica Martins Pereira Faria, Brent W. Winston, Michael G. Surette, John Conly
Software Mentions: 1
Published: over 6 years ago
10.1186/s12866-020-02037-6
Lower methane emissions were associated with higher abundance of ruminal Prevotella in a cohort of Colombian buffalos
Cited by: 17
Author(s): Sandra Bibiana Aguilar Marín, Claudia Lorena Betancur-Murillo, Gustavo Isaza, Henry Mesa, Juan Jovel
Software Mentions: 1
Published: about 4 years ago
10.1186/s12866-018-1362-x
Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study
Cited by: 43
Author(s): Corrie M. Whisner, Juan Maldonado, Brandon Dente, Rosa Krajmalnik‐Brown, Meg Bruening
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12866-018-1290-9
Different laboratory populations similar bacterial profile? The case of Glossina palpalis gambiensis
Cited by: 4
Author(s): Vangelis Doudoumis, Antonios A. Augustinos, Aggeliki Saridaki, Andrew G. Parker, Adly M. M. Abd-Alla, Kostas Bourtzis, George Tsiamis
Software Mentions: 1
Published: about 6 years ago
10.1186/s12866-020-01992-4
The pelvis urinary microbiome in patients with kidney stones and clinical associations
Cited by: 9
Author(s): Fengping Liu, Nan Zhang, Yunhong Wu, Jiang Peng, Tingting Jiang, Wang Yang, Yuwei Zhang, Qixiao Zhai, Yeqing Zou, Na Feng
Software Mentions: 1
Published: about 4 years ago
10.1186/s12866-017-1064-9
The oral fungal mycobiome: characteristics and relation to periodontitis in a pilot study
Cited by: 91
Author(s): Brandilyn A. Peters, Jing Wu, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 1
Published: over 7 years ago
10.1186/s12866-021-02171-9
Defining the temporal evolution of gut dysbiosis and inflammatory responses leading to hepatocellular carcinoma in Mdr2 −/− mouse model
Cited by: 11
Author(s): Jason Behary, Anita Raposo, Nadia Amorim, Huimin Zheng, Lan Gong, Emily McGovern, Jinbiao Chen, K. Liu, Julia Beretov, C. Theocharous, M.T. Jackson, J. Seet-Lee, Geoffrey W. McCaughan, Emad El‐Omar, Amany Zekry
Software Mentions: 1
Published: over 3 years ago
10.1186/s12866-020-01843-2
The microbiome of diabetic foot ulcers: a comparison of swab and tissue biopsy wound sampling techniques using 16S rRNA gene sequencing
Cited by: 16
Author(s): Jason Travis, Matthew Malone, Honghua Hu, Abdul Baten, Khalid Johani, Flavia Huygens, Karen Vickery, Kirsten Benkendorff
Software Mentions: 1
Published: over 4 years ago
10.1186/s12866-019-1391-0
Comparative study of vulva and abdominal skin microbiota of healthy females with high and average BMI
Cited by: 18
Author(s): Rebecca Vongsa, Deborah Hoffman, Kristin Shepard, David W. Koenig
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12866-019-1426-6
Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue
Cited by: 20
Author(s): Christopher J. Stewart, Roxana Fatemizadeh, Pamela Parsons, Christopher A Lamb, Deborah A. Shady, Joseph F. Petrosino, Amy B. Hair
Software Mentions: 1
Published: over 5 years ago
10.1186/s12866-021-02173-7
Association between aging-dependent gut microbiome dysbiosis and dry eye severity in C57BL/6 male mouse model: a pilot study
Cited by: 19
Author(s): Chang Ho Yoon, Jin Suk Ryu, Jin Young Moon, Mee Kum Kim
Software Mentions: 1
Published: over 3 years ago
10.1186/s12866-019-1514-7
Bacterial microbiomes of Ixodes scapularis ticks collected from Massachusetts and Texas, USA
Cited by: 42
Author(s): Santosh Thapa, Yan Zhang, Michael S. Allen
Software Mentions: 1
Published: over 5 years ago
10.1186/s12866-020-01816-5
Altered gut microbiota in infants is associated with respiratory syncytial virus disease severity
Cited by: 33
Author(s): Jeffrey N Harding, David Siefker, Luan Vu, Dahui You, John P. DeVincenzo, Joseph F. Pierre, Stephania A. Cormier
Software Mentions: 1
Published: over 4 years ago
10.1186/s12866-020-02033-w
Sulfated vizantin causes detachment of biofilms composed mainly of the genus Streptococcus without affecting bacterial growth and viability
Cited by: 1
Author(s): Taisuke Hasegawa, Shoji Takenaka, Masataka Oda, Hisanori Domon, Takumi Hiyoshi, Karin Sasagawa, Tatsuya Ohsumi, Noritaka Hayashi, Yasuko Okamoto, Hirofumi Yamamoto, Hayato Ohshima, Yutaka Terao, Yuichiro Noiri
Software Mentions: 1
Published: about 4 years ago
10.1186/s12866-015-0622-2
Colonization potential to reconstitute a microbe community in patients detected early after fecal microbe transplant for recurrent C. difficile
Cited by: 18
Author(s): Ranjit Kumar, Craig L. Maynard, Peter Eipers, Kelly T. Goldsmith, Travis Ptacek, James Grubbs, Paula Dixon, Donna Howard, David K. Crossman, Michael R. Crowley, William H. Benjamin, Elliot J. Lefkowitz, Casey T. Weaver, Jorge Martín Rodríguez, Casey D. Morrow
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12866-021-02200-7
Correction to: Aging progression of human gut microbiota
Cited by: 2
Author(s): Congmin Xu, Huaiqiu Zhu, Peng Qiu
Software Mentions: 1
Published: over 3 years ago
10.1186/s12866-021-02302-2
Skin dysbiosis in the microbiome in atopic dermatitis is site-specific and involves bacteria, fungus and virus
Cited by: 18
Author(s): Rie Dybboe Bjerre, Jacob Bak Holm, Albert Pallejà, Julie Sølberg, Lone Skov, Jeanne Duus Johansen
Software Mentions: 1
Published: about 3 years ago
10.1186/s12866-020-01860-1
Unveiling protist diversity associated with the Pacific oyster Crassostrea gigas using blocking and excluding primers
Cited by: 4
Author(s): Camille Clérissi, Laure Guillou, Jean-Michel Escoubas, Ève Toulza
Software Mentions: 1
Published: over 4 years ago
10.1186/s12866-020-01892-7
Gut microbiota maturation during early human life induces enterocyte proliferation via microbial metabolites
Cited by: 24
Author(s): Michael W. Dougherty, Oleksandr Kudin, Marcus Mühlbauer, Josef Neu, Raad Z. Gharaibeh, Christian Jobin
Software Mentions: 1
Published: over 4 years ago
10.1186/s12866-020-01723-9
Timing of complementary feeding is associated with gut microbiota diversity and composition and short chain fatty acid concentrations over the first year of life
Cited by: 60
Author(s): Moira K. Differding, Sara E. Benjamin‐Neelon, Cathrine Hoyo, Truls Østbye, Noel T. Mueller
Software Mentions: 1
Published: over 4 years ago
10.1186/s12866-015-0557-7
The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients
Cited by: 24
Author(s): Monica Martins Pereira Faria, JM Conly, Michael G. Surette
Software Mentions: 1
Published: about 9 years ago
10.1186/s12866-020-02056-3
Alterations in the intestinal microbiome and mental health status of workers in an underground tunnel environment
Cited by: 5
Author(s): Zhenhua Li, Yiwen Liu, Zhenyu Ji, Ting Fu, Min Yan, Zhongjun Shao, Yong Long
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12866-016-0803-7
Household air pollution and the lung microbiome of healthy adults in Malawi: a cross-sectional study
Cited by: 49
Author(s): Jamie Rylance, Anstead Kankwatira, David E. Nelson, David E. Nelson, Richard B. Day, Huaiying Lin, Xiang Gao, Qunfeng Dong, Erica Sodergren, George M. Weinstock, Robert S. Heyderman, Homer L. Twigg, Stephen B. Gordon
Software Mentions: 1
Published: over 8 years ago
10.1186/s12866-020-02081-2
Diversity and composition of the Panax ginseng rhizosphere microbiome in various cultivation modesand ages
Cited by: 39
Author(s): Ai-Zi Tong, Wei Liu, Qiang Liu, Guangqing Xia, Zhu Junyi
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12866-018-1274-9
The palatine tonsil bacteriome, but not the mycobiome, is altered in HIV infection
Cited by: 18
Author(s): Yusuke Fukui, Kotaro Aoki, Yoshikazu Ishii, Kazuhiro Tateda
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2369-15-106
SYNbiotics Easing Renal failure by improving Gut microbiologY (SYNERGY): a protocol of placebo-controlled randomised cross-over trial
Cited by: 43
Author(s): Megan Rossi, David W. Johnson, Mark Morrison, Elaine M. Pascoe, Jeff S. Coombes, Josephine M. Forbes, Brett McWhinney, Jacobus P.J. Ungerer, Goce Dimeski, Katrina L. Campbell
Software Mentions: 1
Published: over 10 years ago
10.1186/s12903-019-0956-5
The human oral cavity microbiota composition during acute tonsillitis: a cross-sectional survey
Cited by: 17
Author(s): Yun Kit Yeoh, Man Hin Chan, Zigui Chen, Eddy W. H. Lam, Pak-Kin Wong, Chi Man Ngai, Paul K.S. Chan, Michael K. Hui
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12903-019-0906-2
Composition and diversity of the subgingival microbiome and its relationship with age in postmenopausal women: an epidemiologic investigation
Cited by: 15
Author(s): Michael J. LaMonte, Robert J. Genco, Michael Buck, Daniel McSkimming, Lü Li, Kathleen M. Hovey, Chris Andrews, Wei Zheng, Yijun Sun, Amy E. Millen, Maria Tsompana, Hailey R. Banack, Jean Wactawski‐Wende
Software Mentions: 1
Published: about 5 years ago
10.1186/s12903-021-01828-1
Old age and other factors associated with salivary microbiome variation
Cited by: 17
Author(s): Joel L. Schwartz, Natalia Peña, Nadia Kawar, Andrew Zhang, Nicholas Callahan, Steven J. Robles, Andrew Griebel, Guy R. Adami
Software Mentions: 1
Published: about 3 years ago
10.1186/s12903-021-01529-9
Removable denture is a risk indicator for peri-implantitis and facilitates expansion of specific periodontopathogens: a cross-sectional study
Cited by: 8
Author(s): Jasmin Grischke, Szymon P. Szafrański, Uthayakumar Muthukumarasamy, Susanne Haeussler, Meike Stiesch
Software Mentions: 1
Published: over 3 years ago
10.1186/s12887-019-1502-y
MAMI: a birth cohort focused on maternal-infant microbiota during early life
Cited by: 24
Author(s): Izaskun García-Mantrana, Cristina Alcántara, Marta Selma‐Royo, Alba Boix-Amorós, Majda Dzidic, José V. Gimeno-Alcañíz, Isabel Úbeda-Sansano, Ignacio Sorribes-Monrabal, Ramón Escuriet, Fernando Gil-Raga, Anna Parra-Llorca, Cécilia Martínez-Costa, María Carmen Collado
Software Mentions: 1
Published: over 5 years ago
10.1186/s12887-020-02433-x
Breastfeeding restored the gut microbiota in caesarean section infants and lowered the infection risk in early life
Cited by: 16
Author(s): Gregory Yin Ming Cheng, Qian Zhou, Muxia Li, Zhou LeTian, Lei Xu, Ying Zhang, Dongfang Li, Ye Wang, Wenkui Dai, Shuai Cheng Li, Lin Zhang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12887-017-0805-0
Assessment of complementary feeding of Canadian infants: effects on microbiome & oxidative stress, a randomized controlled trial
Cited by: 40
Author(s): Wafaa Qasem, Meghan B. Azad, Zakir Hossain, Elnaz Azad, Sarah Jorgensen, Sandra Castillo San Juan, Chenxi Cai, Ehsan Khafipour, Trust Beta, L. Jackson Roberts, James K. Friel
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12870-016-0767-7
Shifts in plant foliar and floral metabolomes in response to the suppression of the associated microbiota
Cited by: 38
Author(s): Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Alex Guenther, Joan Llusià, Laura Rico, Jaume Terradas, Gerard Farré‐Armengol, Iolanda Filella, Teodor Parella, Josep Peñuelas
Software Mentions: 1
Published: over 8 years ago
10.1186/s12870-019-1661-x
Salt stress vs. salt shock - the case of sugar beet and its halophytic ancestor
Cited by: 49
Author(s): Monika Skorupa, Jacek Kęsy, Katarzyna Kurnik, Janusz Niedojadło, Jacek Kęsy, Krzysztof Klamkowski, Katarzyna Wójcik, W. Treder, Andrzej Tretyn, Jarosław Tyburski
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13104-017-2960-7
Doxycycline induces dysbiosis in female C57BL/6NCrl mice
Cited by: 27
Author(s): Felicia D. Duke Boynton, Aaron C. Ericsson, Mayu Uchihashi, Misha Dunbar, John E. Wilkinson
Software Mentions: 1
Published: about 7 years ago
10.1186/s12917-020-02295-6
The equine gastrointestinal microbiome: impacts of weight-loss
Cited by: 19
Author(s): Philippa K. Morrison, C. J. Newbold, Eleanor Jones, Hilary J. Worgan, Dai Grove‐White, Alex Dugdale, Clare Barfoot, Patricia A. Harris, Caroline McG. Argo
Software Mentions: 1
Published: over 4 years ago
10.1186/s12917-020-02670-3
Effect of sterilization on the canine vaginal microbiota: a pilot study
Cited by: 5
Author(s): Ada Rota, Michela Corrò, Ilaria Patuzzi, Chiara Milani, Stefania Masia, Eleonora Mastrorilli, Sara Petrin, Alessandra Longo, Angela Del Carro, Carmen Losasso
Software Mentions: 1
Published: about 4 years ago
10.1186/1746-6148-9-258
Multivariate evaluation of the effectiveness of treatment efficacy of cypermethrin against sea lice (Lepeophtheirus salmonis) in Atlantic salmon (Salmo salar)
Cited by: 10
Author(s): Daniel Ferrer Jiménez, Crawford W. Revie, Simon P. Hardy, P. A. Jansen, G. Gettinby
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12917-017-1073-9
A diet change from dry food to beef induces reversible changes on the faecal microbiota in healthy, adult client-owned dogs
Cited by: 55
Author(s): Kristin Marie Valand Herstad, Karina Gajardo, Anne Marie Bakke, Lars Moe, Jane Ludvigsen, Knut Rudi, Ida Rud, Monika Sekelja, Ellen Skancke
Software Mentions: 1
Published: over 7 years ago
10.1186/s12917-020-02437-w
Saccharomyces cerevisiae fermentation products (SCFP) stabilize the ruminal microbiota of lactating dairy cows during periods of a depressed rumen pH
Cited by: 19
Author(s): Hein Min Tun, Shucong Li, I. Yoon, S. J. Meale, Paula Azevedo, Ehsan Khafipour, J.C. Plaizier
Software Mentions: 1
Published: over 4 years ago
10.1186/s12917-020-02477-2
The gut bacterial diversity of sheep associated with different breeds in Qinghai province
Cited by: 20
Author(s): Jianjun Chang, Xiaoting Yao, Chenxiang Zuo, Yuxu Qi, Dekun Chen, Wentao Ma
Software Mentions: 1
Published: over 4 years ago
10.1186/s12917-021-02972-0
Spatiotemporal variation in the fecal microbiota of mule deer is associated with proximate and future measures of host health
Cited by: 1
Author(s): Hyrum S. Eddington, Courtney Carroll, Randy T. Larsen, Brock R. McMillan, John M. Chaston
Software Mentions: 1
Published: over 3 years ago
10.1186/s13040-018-0187-3
Knomics-Biota - a system for exploratory analysis of human gut microbiota data
Cited by: 27
Author(s): Daria Efimova, Alexander Tyakht, Anna Popenko, Anatoly Vasilyev, Ilya Altukhov, Nikita V. Dovidchenko, Vera Odintsova, Natalia Klimenko, Robert Loshkarev, Maria Pashkova, A. N. Elizarova, Viktoriya Voroshilova, Sergei Slavskii, Yury Pekov, É. D. Filippova, Tatiana I. Shashkova, E.V. Levin, Dmitry Alexeev
Software Mentions: 1
Published: about 6 years ago
10.3897/BDJ.7.e37968
Fauna of nocturnal moth species collected in a semi-natural grassland at Kanpu-zan in northern Japan
Cited by: 1
Author(s): Masaru Kamikura, Yuzu Sakata
Software Mentions: 1
Published: over 5 years ago
10.3897/BDJ.4.e8233
Environmental variability and heavy metal concentrations from five lagoons in the Ionian Sea (Amvrakikos Gulf, W Greece)
Cited by: 5
Author(s): Katerina Vasileiadou, Christina Pavloudi, Ioanna Kalantzi, Eugenia T. Apostolaki, Georgios Chatzigeorgiou, Eva Chatzinikolaou, Evangelos Pafilis, Nikos Papageorgiou, Lucia Fanini, Spyridon Konstas, Nina Fragopoulou, Christos Arvanitidis
Software Mentions: 1
Published: about 8 years ago
10.3897/BDJ.9.e54843
The effect of edaphic factors on the distribution and abundance of ants (Hymenoptera: Formicidae) in Iran
Cited by: 2
Author(s): Mohammad Réza Mohseni, Shahrokh Pashaei Rad
Software Mentions: 1
Published: almost 4 years ago
10.1007/s10530-017-1634-7
Historical ecology of a biological invasion: the interplay of eutrophication and pollution determines time lags in establishment and detection
Cited by: 39
Author(s): Paolo G. Albano, Ivo Gallmetzer, Alexandra Haselmair, Adam Tomášových, Michael Stachowitsch, Martin Zuschin
Software Mentions: 1
Published: about 7 years ago
10.1242/bio.045591
High levels of floridoside at high salinity link osmoadaptation with bleaching susceptibility in the cnidarian-algal endosymbiosis
Cited by: 17
Author(s): Hagen M. Gegner, Nils Rädecker, Michael A. Ochsenkühn, Marcelle Muniz Barreto, Maren Ziegler, Jessica Reichert, Patrick Schubert, Thomas Wilke, Christian R. Voolstra
Software Mentions: 1
Published: almost 5 years ago
10.1242/bio.045252
First data on microflora of loggerhead sea turtle (<i>Caretta caretta)</i> nests from the coastlines of Sicily (Italy)
Cited by: 10
Author(s): Delia Gambino, Maria Flaminia Persichetti, Antonino Gentile, Marco Arculeo, Giulia Visconti, V. Currò, Giulia Caracappa, Daniela Crucitti, Antonio Piazza, Francesca Mancianti, Simona Nardoni, Domenico Vicari, S. Caracappà
Software Mentions: 1
Published: almost 5 years ago
10.1242/bio.013409
Changes in cell shape are correlated with metastatic potential in murine and human osteosarcomas
Cited by: 60
Author(s): Samanthe M. Lyons, Elaheh Alizadeh, Joshua Mannheimer, Katherine Schuamberg, Jordan Castle, Bryce Schroder, Philip Turk, Douglas H. Thamm, Ashok Prasad
Software Mentions: 1
Published: almost 9 years ago
10.1242/bio.201411288
Differences in the fatty-acid composition of rodent spermatozoa are associated to levels of sperm competition
Cited by: 19
Author(s): Javier delBarco‐Trillo, Rafael Mateo, Eduardo R. S. Roldán
Software Mentions: 1
Published: over 9 years ago
10.1186/s12575-020-00131-7
Nasopharyngeal Microbiota Profiling of SARS-CoV-2 Infected Patients
Cited by: 68
Author(s): Flavio De Maio, Brunella Posteraro, Francesca Romana Ponziani, Paola Cattani, Antonio Gasbarrini, Maurizio Sanguinetti
Software Mentions: 1
Published: over 4 years ago
10.1186/s13293-020-00346-z
Analysis of sex differences in dietary copper-fructose interaction-induced alterations of gut microbial activity in relation to hepatic steatosis
Cited by: 5
Author(s): Ming Song, Fang Yuan, Xiaohong Li, Xipeng Ma, Xinmin Yin, Eric C. Rouchka, Xiang Zhang, Zhongbin Deng, Russell A. Prough, Craig J. McClain
Software Mentions: 1
Published: almost 4 years ago
10.3390/biology10060457
Parasites, Drugs and Captivity: Blastocystis-Microbiome Associations in Captive Water Voles
Cited by: 5
Author(s): Emma L. Betts, Sumaiya Hoque, Lucy Torbe, J. R. Bailey, Hazel Ryan, Karen Toller, Vicki Breakell, Angus I. Carpenter, Alex Diana, Eleni Matechou, Eleni Gentekaki, Anastasios D. Tsaousis
Software Mentions: 1
Published: over 3 years ago
10.3390/biology9120420
Endophytic Fungi as Potential Biological Control Agents against Grapevine Trunk Diseases in Alentejo Region
Cited by: 22
Author(s): Angela Billar de Almeida, Jonathan Concas, Maria Doroteia Campos, Patrick Materatski, Carla Varanda, Mariana Patanita, Sergio Murolo, Gianfranco Romanazzi, Maria do Rosário Félix
Software Mentions: 1
Published: about 4 years ago
10.3390/biology10090905
Vairimorpha (Nosema) ceranae Infection Alters Honey Bee Microbiota Composition and Sustains the Survival of Adult Honey Bees
Cited by: 9
Author(s): Yakun Zhang, Meiling Su, Long Wang, Shaokang Huang, Songkun Su, Wei‐Fone Huang
Software Mentions: 1
Published: about 3 years ago
10.1155/2015/153851
The Date Palm Tree Rhizosphere Is a Niche for Plant Growth Promoting Bacteria in the Oasis Ecosystem
Cited by: 35
Author(s): Raoudha Ferjani, Ramona Marasco, Eleonora Rolli, Hanène Chérif, Ameur Chérif, Maher Gtari, Abdellatif Boudabous, Daniele Daffonchio, Hadda-Imène Ouzari
Software Mentions: 1
Published: almost 10 years ago
10.1155/2015/981829
Bacterial Diversity and Bioremediation Potential of the Highly Contaminated Marine Sediments at El-Max District (Egypt, Mediterranean Sea)
Cited by: 13
Author(s): Ranya Amer, Francesca Mapelli, Hamada M. El Gendi, Marta Barbato, Doaa A. Goda, A. Corsini, L. Cavalca, Marco Fusi, Sara Borin, Daniele Daffonchio, Yasser R. Abdel-Fattah
Software Mentions: 1
Published: almost 10 years ago
10.1155/2013/491091
Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments
Cited by: 40
Author(s): Ramona Marasco, Eleonora Rolli, Marco Fusi, Ameur Chérif, A.F. Abou-Hadid, Usama El-Bahairy, Sara Borin, C. Sorlini, Daniele Daffonchio
Software Mentions: 1
Published: almost 12 years ago
10.1155/2021/5554991
Roux-en-Y Gastric Bypass Improved Insulin Resistance via Alteration of the Human Gut Microbiome and Alleviation of Endotoxemia
Cited by: 4
Author(s): Qiankun Shi, Qian Wang, Hui Zhong, Dehai Li, Shuxing Yu, Hengwen Yang, Cunchuan Wang, Zhinan Yin
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/6587136
Altered Gut Microbiota and Shift in<i>Bacteroidetes</i>between Young Obese and Normal-Weight Korean Children: A Cross-Sectional Observational Study
Cited by: 19
Author(s): Saeam Shin, Ky Young Cho
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/1673602
Recovery Dynamics of Intestinal Bacterial Communities of CCl4-Treated Mice with or without Mesenchymal Stem Cell Transplantation over Different Time Points
Cited by: 1
Author(s): Yanping Xu, Hua Zha, Wenyi Chen, Hong Cao, Lanjuan Li
Software Mentions: 1
Published: about 4 years ago
10.3390/biom11030478
Selective Fatty Acid Retention and Turnover in the Freshwater Amphipod Pallaseopsis quadrispinosa
Cited by: 7
Author(s): Sami J. Taipale, Erwin Kers, Elina Peltomaa, John Loehr, Martin J. Kainz
Software Mentions: 1
Published: over 3 years ago
10.1186/s13068-018-1344-0
Exploring the roles of and interactions among microbes in dry co-digestion of food waste and pig manure using high-throughput 16S rRNA gene amplicon sequencing
Cited by: 45
Author(s): Yan Jiang, Conor Dennehy, Peadar G. Lawlor, Zhenhu Hu, Matthew S. McCabe, Paul Cormican, Xinmin Zhan, Gillian E. Gardiner
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41416-020-01253-1
Transitions in oral and gut microbiome of HPV+ oropharyngeal squamous cell carcinoma following definitive chemoradiotherapy (ROMA LA-OPSCC study)
Cited by: 18
Author(s): Marc Oliva, Pierre H. H. Schneeberger, Victor Rey, Matthew Cho, Rachel Taylor, Aaron Richard Hansen, Kenneth W. Taylor, Andrew Bayley, Andrew Hope, Scott V. Bratman, Jolie Ringash, Simron Singh, Ilan Weinreb, Bayardo Perez-Ordoñez, John Waldron, Wei Xu, David S. Guttman, Lillian L. Siu, Bryan Coburn, Anna Spreafico
Software Mentions: 1
Published: over 3 years ago
10.1016/j.bbi.2016.04.003
Brain injury induces specific changes in the caecal microbiota of mice via altered autonomic activity and mucoprotein production
Cited by: 244
Author(s): Ashley Houlden, Marie Goldrick, David Brough, E.S. Vizi, Nikolett Lénárt, Bernadett Martinecz, Ian S. Roberts, Ádám Dénes
Software Mentions: 1
Published: about 8 years ago
10.1016/j.bbih.2020.100168
A review of potential microbiome-gut-brain axis mediated neurocognitive conditions in persons living with HIV
Cited by: 10
Author(s): Shannan N. Rich, Emily Klann, Vaughn Bryant, Veronica L Richards, Akemi Wijayabahu, Kendall Bryant, Volker Mai, Robert L. Cook
Software Mentions: 1
Published: almost 4 years ago
10.3390/brainsci11070905
Andrographolide Attenuates Gut-Brain-Axis Associated Pathology in Gulf War Illness by Modulating Bacteriome-Virome Associated Inflammation and Microglia-Neuron Proinflammatory Crosstalk
Cited by: 10
Author(s): Punnag Saha, Peter T Skidmore, LaRinda A Holland, Ayan Mondal, Dipro Bose, Ratanesh Seth, Kimberly Sullivan, Patricia Janulewicz, Ronnie D. Horner, Nancy G. Klimas, Mitzi Nagarkatti, Efrem S. Lim, Saurabh Chatterjee
Software Mentions: 1
Published: over 3 years ago
10.1155/2016/4792898
Program and Abstracts from the Canadian Digestive Diseases Week™2016
Cited by: 11
Author(s): Gastroenterology Ca
Software Mentions: 1
Published: almost 9 years ago
10.1002/cam4.2419
Dysbiosis signatures of the microbial profile in tissue from bladder cancer
Cited by: 59
Author(s): Fei Liu, Anwei Liu, Xin Lü, Zhensheng Zhang, Yongping Xue, Jiapeng Xu, Shuxiong Zeng, Qiao Xiong, Haoyuan Tan, Xing He, Weidong Xu, Yinghao Sun, Chuanliang Xu
Software Mentions: 1
Published: about 5 years ago
10.1016/S2214-109X(19)30540-6
Cause-specific mortality of children younger than 5 years in communities receiving biannual mass azithromycin treatment in Niger: verbal autopsy results from a cluster-randomised controlled trial
Cited by: 33
Author(s): Jeremy D. Keenan, Ahmed M. Arzika, Ramatou Maliki, Sanoussi Elh Adamou, Fatima Ibrahim, Mariama Kiemago, Nana Fatima Galo, Elodie Lebas, Catherine Cook, Benjamin Vanderschelden, Robin L. Bailey, Sheila K. West, Travis C. Porco, Thomas M. Lietman, Paul M. Emerson, Jerusha Weaver, John Hart, Abdou Amza, Boubacar Kadri, Beido Nassirou, E. Kelly Callahan, Aisha E. P. Stewart, Salissou Kane, Sun Y. Cotter, Thuy Doan, Dionna M. Fry, Ying Lin, Kieran O’Brien, Catherine E. Oldenburg, Kathryn J. Ray, Philip J. Rosenthal, George W Rutherford, Nicole E Varnado, Lina Zhong, Zhaoxia Zhou
Software Mentions: 1
Published: almost 5 years ago
10.3390/life10090195
The Effects of Metformin on the Gut Microbiota of Patients with Type 2 Diabetes: A Two-Center, Quasi-Experimental Study
Cited by: 17
Author(s): Harushi Nakajima, Fumie Takewaki, Yoshitaka Hashimoto, Shizuo Kajiyama, Susumu Majima, Hiroshi Okada, Takafumi Senmaru, Emi Ushigome, Naoko Nakanishi, Masahide Hamaguchi, Masahiro Yamazaki, Yoshiki Tanaka, Yousuke Oikawa, Shunji Nakajima, Hiroshi Ohno, Michiaki Fukui
Software Mentions: 1
Published: about 4 years ago
10.3390/life11030235
Gut Microbial Composition and Predicted Functions Are Not Associated with Feather Pecking and Antagonistic Behavior in Laying Hens
Cited by: 10
Author(s): Daniel Borda-Molina, Hanna Iffland, Markus Schmid, Regina Céli Sarkis Müller, Svenja Schad, Jana Seifert, Jens Tetens, W. Bessei, Jörn Bennewitz, Amélia Camarinha‐Silva
Software Mentions: 1
Published: over 3 years ago
10.26508/lsa.201900592
Paneth cell α-defensin misfolding correlates with dysbiosis and ileitis in Crohn’s disease model mice
Cited by: 22
Author(s): Yu Shimizu, Kiminori Nakamura, Aki Yoshii, Yoshiaki Yokoi, Mani Kikuchi, Ryuga Shinozaki, Shunta Nakamura, Shuya Ohira, Rina Sugimoto, Tokiyoshi Ayabe
Software Mentions: 1
Published: over 4 years ago
10.1186/s12936-016-1279-5
Determination of the foraging behaviour and blood meal source of malaria vector mosquitoes in Trincomalee District of Sri Lanka using a multiplex real time polymerase chain reaction assay
Cited by: 19
Author(s): Nayana Gunathilaka, Thanuja Denipitiya, Menaka Hapugoda, W. Abeyewickreme, Rajitha Wickremasinghe
Software Mentions: 1
Published: over 8 years ago
10.1007/s00227-018-3338-7
Limited impact of an invasive oyster on intertidal assemblage structure and biodiversity: the importance of environmental context and functional equivalency with native species
Cited by: 14
Author(s): Nadescha Zwerschke, Philip R. Hollyman, Romy Wild, Robin Strigner, John R. G. Turner, J. W. King
Software Mentions: 1
Published: over 6 years ago
10.1007/s00227-016-3029-1
Survival of ship biofouling assemblages during and after voyages to the Canadian Arctic
Cited by: 22
Author(s): Farrah T. Chan, Hugh J. MacIsaac, Sarah A. Bailey
Software Mentions: 1
Published: about 8 years ago
10.1007/s00227-013-2329-y
Species-specific effect of macrobenthic assemblages on meiobenthos and nematode community structure in shallow sandy sediments
Cited by: 21
Author(s): Barbara Urban-Malinga, Aleksander Drgas, Sławomira Gromisz, Natalie Y. Barnes
Software Mentions: 1
Published: about 11 years ago
10.1007/s10126-020-09972-5
Diet-Induced Physiological Responses in the Liver of Atlantic Salmon (Salmo salar) Inferred Using Multiplex PCR Platforms
Cited by: 6
Author(s): Albert Caballero‐Solares, Xi Xue, Beth M. Cleveland, Maryam Beheshti Foroutani, Christopher C. Parrish, Richard G. Taylor, Matthew L. Rise
Software Mentions: 1
Published: over 4 years ago
10.3390/md13031410
Solvent Separating Secondary Metabolites Directly from Biosynthetic Tissue for Surface-Assisted Laser Desorption Ionisation Mass Spectrometry
Cited by: 10
Author(s): David Rudd, Kirsten Benkendorff, Nicolas H. Voelcker
Software Mentions: 1
Published: over 9 years ago
10.3390/md13074357
Lipids and Composition of Fatty Acids of Saccharina latissima Cultivated Year-Round in Integrated Multi-Trophic Aquaculture
Cited by: 31
Author(s): Gonçalo Silva Marinho, Susan Løvstad Holdt, Charlotte Jacobsen, Irini Angelidaki
Software Mentions: 1
Published: over 9 years ago
10.3390/md11020489
Sources of Secondary Metabolite Variation in Dysidea avara (Porifera: Demospongiae): The Importance of Having Good Neighbors
Cited by: 31
Author(s): Sònia de Caralt, Delphine Bry, Nataly Bontemps, Xavier Turon, María-J. Uriz, Bernard Banaigs
Software Mentions: 1
Published: almost 12 years ago
10.3390/md17040233
Comparison of Diatoms and Dinoflagellates from Different Habitats as Sources of PUFAs
Cited by: 39
Author(s): Elina Peltomaa, Heidi Hällfors, Sami J. Taipale
Software Mentions: 1
Published: over 5 years ago
10.3390/md19080469
Screening for Health-Promoting Fatty Acids in Ascidians and Seaweeds Grown under the Influence of Fish Farming Activities
Cited by: 1
Author(s): Luísa Marques, Rosário M. Domingues, Elisabete da Costa, Maria Helena Abreu, Ana I. Lillebø, Ricardo Calado
Software Mentions: 1
Published: over 3 years ago
10.3390/md14030049
Bioprospecting of Marine Macrophytes Using MS-Based Lipidomics as a New Approach
Cited by: 42
Author(s): Elisabete Maciel, Miguel C. Leal, Ana I. Lillebø, Pedro Domingues, M. Rosário M. Domingues, Ricardo Calado
Software Mentions: 1
Published: over 8 years ago
10.3390/md18030175
Marine Microalgae, Spirulina maxima-Derived Modified Pectin and Modified Pectin Nanoparticles Modulate the Gut Microbiota and Trigger Immune Responses in Mice
Cited by: 24
Author(s): H.P.S.U. Chandrarathna, T.D. Liyanage, Shan Lakmal Edirisinghe, S.H.S. Dananjaya, E.H.T. Thulshan, Chamilani Nikapitiya, Chulhong Oh, Do‐Hyung Kang, Mahanama De Zoysa
Software Mentions: 1
Published: over 4 years ago
10.3390/md17010017
The Jellyfish Rhizostoma pulmo (Cnidaria): Biochemical Composition of Ovaries and Antibacterial Lysozyme-like Activity of the Oocyte Lysate
Cited by: 14
Author(s): Loredana Stabili, Lucia Rizzo, Francesco Paolo Fanizzi, Federica Angilè, Laura Del Coco, Chiara Roberta Girelli, Silvia Lomartire, Stefano Piraino, Lorena Basso
Software Mentions: 1
Published: almost 6 years ago
10.3390/md18030177
The Microbial Community of Tetrodotoxin-Bearing and Non-Tetrodotoxin-Bearing Ribbon Worms (Nemertea) from the Sea of Japan
Cited by: 3
Author(s): Daria I. Melnikova, Timur Yu. Magarlamov
Software Mentions: 1
Published: over 4 years ago
10.3390/md18120598
Sterol Composition of Sponges, Cnidarians, Arthropods, Mollusks, and Echinoderms from the Deep Northwest Atlantic: A Comparison with Shallow Coastal Gulf of Mexico
Cited by: 6
Author(s): Laura Carreón-Palau, Nurgül Şen Özdemir, Christopher C. Parrish, Camilla Parzanini
Software Mentions: 1
Published: about 4 years ago
10.1155/2020/8829072
Alterations in the Blood Parameters and Fecal Microbiota and Metabolites during Pregnant and Lactating Stages in Bama Mini Pigs as a Model
Cited by: 8
Author(s): Cui Ma, Qiankun Gao, WangHong Zhang, Md. Abul Kalam Azad, Xiangfeng Kong
Software Mentions: 1
Published: about 4 years ago
10.4317/medoral.23041
Characteristics of the salivary microbiota in cheilitis granulomatosa
Cited by: 2
Author(s): Yang Liu, Qian Zhang, Xiaosheng Hu, Feng Chen, Hong Hua
Software Mentions: 1
Published: almost 6 years ago
10.1590/0074-02760200427
Presence of trypanosomatids, with emphasis on Leishmania, in Rodentia and Didelphimorphia mammals of a rural settlement in the central Amazon region
Cited by: 1
Author(s): Genevere Reis Achilles, Rafael Pinto Kautzmann, Haile Dean Figueiredo Chagas, Jordam William Pereira-Silva, João Aprígio Guerra de Almeida, Fernanda Rodrigues Fonseca, Maria Nazareth Ferreira da Silva, Felipe Arley Costa Pessoa, Alessandra Nava, Claudia Maria Ríos-Velásquez
Software Mentions: 1
Published: almost 4 years ago
10.3390/metabo9060112
Dynamic Changes of Plasma Metabolome in Response to Severe Feed Restriction in Pregnant Ewes
Cited by: 14
Author(s): Chang Guo, Yanfeng Xue, Hossam-eldin Seddik, Yi Yin, Fan Hu, Shengyong Mao
Software Mentions: 1
Published: over 5 years ago
10.3390/metabo10090370
Effect of Added Dietary Betaine and Soluble Fiber on Metabolites and Fecal Microbiome in Dogs with Early Renal Disease
Cited by: 11
Author(s): Eden Ephraim, Dennis E. Jewell
Software Mentions: 1
Published: about 4 years ago
10.3390/metabo9100229
Metabolite Changes in an Estuarine Annelid Following Sublethal Exposure to a Mixture of Zinc and Boscalid
Cited by: 12
Author(s): Georgia M. Sinclair, Allyson L. O’Brien, Michael J. Keough, David P. De Souza, Saravanan Dayalan, Komal Kanojia, Konstantinos A. Kouremenos, Dedreia Tull, Rhys A. Coleman, Oliver A.H. Jones, Sara M. Long
Software Mentions: 1
Published: about 5 years ago
10.1111/1751-7915.13461
Aquatic microbial diversity associated with faecal pollution of Norwegian waterbodies characterized by 16S rRNA gene amplicon deep sequencing
Cited by: 15
Author(s): Lisa Paruch, Adam M. Paruch, Hans Geir Eiken, Roald Sørheim
Software Mentions: 1
Published: over 5 years ago
10.1111/1751-7915.13417
Long‐term microbial community dynamics at two full‐scale biotrickling filters treating pig house exhaust air
Cited by: 8
Author(s): Caroline Van der Heyden, Tom De Mulder, Eveline Volcke, Peter Demeyer, Marc Heyndrickx, Geertrui Rasschaert
Software Mentions: 1
Published: over 5 years ago
10.1111/1751-7915.13395
Effect of forest fire prevention treatments on bacterial communities associated with productive<i>Boletus edulis</i>sites
Cited by: 18
Author(s): Olaya Mediavilla, József Geml, Jaime Olaizola, Juan Rueda, Petr Baldrián, Pablo Martín‐Pinto
Software Mentions: 1
Published: over 5 years ago