cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/nu12072088

Sex-Specific Differences in the Gut Microbiome in Response to Dietary Fiber Supplementation in IL-10-Deficient Mice
Cited by: 16
Author(s): Zhengxiao Zhang, Jae Eun Hyun, Aducio Thiesen, Heekuk Park, Naomi Hotte, Hikaru Watanabe, Takanobu Higashiyama, Karen Madsen
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0081910

Determining the Metabolic Footprints of Hydrocarbon Degradation Using Multivariate Analysis
Cited by: 16
Author(s): Renee J. Smith, Thomas C. Jeffries, Eric M. Adetutu, Peter G. Fairweather, James G. Mitchell
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2020.00415

Comparison of Bacterial DNA Profiles in Mid-Trimester Amniotic Fluid Samples From Preterm and Term Deliveries
Cited by: 27
Author(s): Lisa F. Stinson, Maria Hallingström, Malin Barman, Felicia Viklund, Jeffrey A. Keelan, Marian Kacerovský, Matthew S. Payne, Bo Jacobsson
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0139444

Using Fish Population Metrics to Compare the Effects of Artificial Reef Density
Cited by: 16
Author(s): Catheline Y.M. Froehlich, Richard J. Kline
Software Mentions: 1
Published: almost 11 years ago

10.1186/s42523-020-00049-1

Maternal influences on oral and faecal microbiota maturation in neonatal calves in beef and dairy production systems
Cited by: 18
Author(s): Matthew Barden, Peter Richards‐Rios, Erika Ganda, Luca Lenzi, Richard Eccles, Joseph M. Neary, Jo Oultram, Georgios Oikonomou
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0021195

Development of Bacterial Biofilms on Artificial Corals in Comparison to Surface-Associated Microbes of Hard Corals
Cited by: 43
Author(s): Michael Sweet, Aldo Cróquer, John C. Bythell
Software Mentions: 1
Published: about 15 years ago

10.1007/s11325-020-02246-3

Relationships of sleep disturbance, intestinal microbiota, and postoperative pain in breast cancer patients: a prospective observational study
Cited by: 13
Author(s): Zhiwen Yao, Bing-Cheng Zhao, Xiao Yang, Shao-Hui Lei, Yumei Jiang, Ke-Xuan Liu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0218227

The role of alien species on plant-floral visitor network structure in invaded communities
Cited by: 18
Author(s): Víctor Parra‐Tabla, Diego F. Angulo, Cristopher Albor, María José Campos‐Navarrete, Juan Tún-Garrido, Paula Sosenski, Conchita Alonso, Tia‐Lynn Ashman, Gerardo Arceo‐Gómez
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12866-015-0557-7

The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients
Cited by: 24
Author(s): Monica Martins Pereira Faria, JM Conly, Michael G. Surette
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12866-020-01723-9

Timing of complementary feeding is associated with gut microbiota diversity and composition and short chain fatty acid concentrations over the first year of life
Cited by: 60
Author(s): Moira K. Differding, Sara E. Benjamin‐Neelon, Cathrine Hoyo, Truls Østbye, Noel T. Mueller
Software Mentions: 1
Published: over 6 years ago

10.3390/nu11092193

Sugar Beet Pectin Supplementation Did Not Alter Profiles of Fecal Microbiota and Exhaled Breath in Healthy Young Adults and Healthy Elderly
Cited by: 31
Author(s): Ran An, Ellen Wilms, Agnieszka Smolinska, Gerben D. A. Hermes, Ad Masclee, Paul de Vos, Henk A. Schols, Frederik J. van Schooten, Hauke Smidt, Daisy Jonkers, Erwin G. Zoetendal, Freddy J. Troost
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0117936

The Effect of Filamentous Turf Algal Removal on the Development of Gametes of the Coral Orbicella annularis
Cited by: 6
Author(s): Neidy P. Cetz-Navarro, Eugenio Carpizo‐Ituarte, Julio Espinoza-Ávalos, Guillermina Chee-Barragán
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0256685

High biogeographic and latitudinal variability in gastropod drilling predation on molluscs along the eastern Indian coast: Implications on the history of fossil record of drillholes
Cited by: 1
Author(s): Subhronil Mondal, Hindolita Chakraborty, Sandip Saha, Sahana Dey, Deepjay Sarkar
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.02262

Similar Shift Patterns in Gut Bacterial and Fungal Communities Across the Life Stages of Bactrocera minax Larvae From Two Field Populations
Cited by: 26
Author(s): Zhichao Yao, Qiongke Ma, Zhaohui Cai, Muhammad Fahim Raza, Shuai Bai, Yichen Wang, Ping Zhang, Hua Ma, Hongyu Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13287-020-01902-5

Adipose-derived mesenchymal stem cells attenuate acute lung injury and improve the gut microbiota in septic rats
Cited by: 22
Author(s): Junyi Sun, Xianfei Ding, Shaohua Liu, Xiaoguang Duan, Huoyan Liang, Tongwen Sun
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0173818

Dynamic changes of the respiratory microbiota and its relationship to fecal and blood microbiota in healthy young cats
Cited by: 52
Author(s): Aida I. Vientós‐Plotts, Aaron C. Ericsson, Hansjörg Rindt, Megan Grobman, Amber Graham, Kaitlin Bishop, Leah A. Cohn, Carol R. Reinero
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2015.01130

VarR controls colonization and virulence in the marine macroalgal pathogen Nautella italica R11
Cited by: 17
Author(s): Melissa Gardiner, Neil D. Fernandes, Dennis Nowakowski, Mark J. Raftery, Staffan Kjelleberg, Ling Zhong, Torsten Thomas, Suhelen Egan
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0113068

Fast Growing, Healthy and Resident Green Turtles (Chelonia mydas) at Two Neritic Sites in the Central and Northern Coast of Peru: Implications for Conservation
Cited by: 26
Author(s): Ximena Vélez‐Zuazo, Javier Quiñónes, Aldo S. Pacheco, Luciana Klinge, Evelyn Paredes, Sixto Quispe, Shaleyla Kelez
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2018.01400

Diversity of Fungal Communities in Heshang Cave of Central China Revealed by Mycobiome-Sequencing
Cited by: 20
Author(s): Baiying Man, Hongmei Wang, Yuan Yun, Xiang Xiao, Ruicheng Wang, Yonggang Duan, Xiaoyu Cheng
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2021.570908

Nitrogen Deposition Reduces the Diversity and Abundance of cbbL Gene-Containing CO2-Fixing Microorganisms in the Soil of the Stipa baicalensis Steppe
Cited by: 10
Author(s): Jie Qin, Ming Li, Haifang Zhang, Hongmei Liu, Junjie Zhao, Yang Dian-lin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0217556

Wildlife usage indicates increased similarity between reclaimed upland habitat and mature boreal forest in the Athabasca Oil Sands Region of Alberta, Canada
Cited by: 11
Author(s): Virgil C. Hawkes, Travis G. Gerwing
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2016.00171

Characterization of the Core and Caste-Specific Microbiota in the Termite, Reticulitermes flavipes
Cited by: 56
Author(s): Jacquelynn Benjamino, Joerg Graf
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0158007

The Role of Maternal Nutrition on Oocyte Size and Quality, with Respect to Early Larval Development in The Coral-Eating Starfish, Acanthaster planci
Cited by: 38
Author(s): Ciemon F. Caballes, Morgan S. Pratchett, Alexander M. Kerr, Jairo Rivera-Posada
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2017.00350

An Endohyphal Bacterium (Chitinophaga, Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum (F. solani Species Complex, Nectriaceae)
Cited by: 58
Author(s): Justin P. Shaffer, Jana M. U’Ren, Rachel E. Gallery, David A. Baltrus, A. Elizabeth Arnold
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01127

Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage Regimes
Cited by: 100
Author(s): Florine Degrune, Nicolas Theodorakopoulos, Gilles Colinet, Marie-Pierre Hiel, Bernard Bodson, Bernard Taminiau, Georges Daube, Micheline Vandenbol, Martin Hartmann
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0203748

Impact of violacein from Chromobacterium violaceum on the mammalian gut microbiome
Cited by: 14
Author(s): Heidi Pauer, Cristiane Cassiolato Pires Hardoim, Felipe Lopes Teixeira, Karla Rodrigues Miranda, Davi da Silva Barbirato, Denise P. Carvalho, L. Caetano M. Antunes, Álvaro C. Leitão, Leandro Araújo Lobo, Regina Maria Cavalcanti Pilotto Domingues
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.01446

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies
Cited by: 394
Author(s): Davide Francioli, Elke Schulz, Guillaume Lentendu, Tesfaye Wubet, François Buscot, Thomas Reitz
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0213926

Diversity and shifts of the bacterial community associated with Baikal sponge mass mortalities
Cited by: 34
Author(s): С. И. Беликов, Natalia Belkova, Tatyana V. Butina, Lubov Chernogor, Alexandra Martynova–Van Kley, Armen Nalian, Colin Rorex, И. В. Ханаев, O. O. Maikova, Sergey Feranchuk
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0080510

Feeding Preferences of Abyssal Macrofauna Inferred from In Situ Pulse Chase Experiments
Cited by: 24
Author(s): Rachel M. Jeffreys, Ciara Burke, Alan J. Jamieson, Bhavani Narayanaswamy, Henry A. Ruhl, Kenneth L. Smith, Ursula Witte
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0127616

Decadal Changes in the Abundance and Length of Snapper (Chrysophrys auratus) in Subtropical Marine Sanctuaries
Cited by: 34
Author(s): Hamish A. Malcolm, Arthur L. Schultz, Patrick Sachs, Nicola Johnstone, Alan Jordan
Software Mentions: 1
Published: about 11 years ago

10.1186/s42523-020-00050-8

The microbiota of the surface, dermis and subcutaneous tissue of dog skin
Cited by: 8
Author(s): Rocío García-Fonticoba, Lluís Ferrer, Olga Francino, Anna Cuscó
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.661515

Effects of Field Fumigation and Inoculation With the Pecan Truffle (Tuber lyonii) on the Fungal Community of Pecan (Carya illinoinensis) Seedlings Over 5 Years
Cited by: 3
Author(s): Arthur C. Grupe, Michelle A. Jusino, Alija B. Mujic, Brantlee Spakes Richter, Gregory Bonito, T. B. Brenneman, Matthew Smith
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.629852

Exploration of Intrinsic Microbial Community Modulators in the Rice Endosphere Indicates a Key Role of Distinct Bacterial Taxa Across Different Cultivars
Cited by: 7
Author(s): Pei Wang, Xiao Kong, Hongsong Chen, Yutao Xiao, Huijun Liu, Xiaojuan Li, Zhuo Zhang, Xinqiu Tan, Diandong Wang, Decai Jin, Ye Deng, Tomislav Cernava
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12030634

Microbiological and Immunological Markers in Milk and Infant Feces for Common Gastrointestinal Disorders: A Pilot Study
Cited by: 17
Author(s): Marina Aparicio, Claudio Alba, Juan M. Rodríguez, Leónides Fernández
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0191232

Evaluation of bloodstream infections, Clostridium difficile infections, and gut microbiota in pediatric oncology patients
Cited by: 23
Author(s): Bryan T. Nycz, Samuel R. Dominguez, Deborah Friedman, Joanne M. Hilden, Diana Ir, Charles E. Robertson, Daniel N. Frank
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-020-01892-7

Gut microbiota maturation during early human life induces enterocyte proliferation via microbial metabolites
Cited by: 24
Author(s): Michael W. Dougherty, Oleksandr Kudin, Marcus Mühlbauer, Josef Neu, Raad Z. Gharaibeh, Christian Jobin
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0146329

Agricultural Land Use Determines the Trait Composition of Ground Beetle Communities
Cited by: 41
Author(s): Helena I. Hanson, Erkki Palmu, Klaus Birkhofer, Henrik G. Smith, Katarina Hedlund
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0096358

An Invasive Vector of Zoonotic Disease Sustained by Anthropogenic Resources: The Raccoon Dog in Northern Europe
Cited by: 38
Author(s): Karmen Süld, Harri Valdmann, Leidi Laurimaa, Egle Soe, John Davison, Urmas Saarma
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2019.03062

The Preliminary Development of an in vitro Poultry Cecal Culture Model to Evaluate the Effects of Original XPCTM for the Reduction of Campylobacter jejuni and Its Potential Effects on the Microbiota
Cited by: 14
Author(s): Kristina M. Feye, Peter M. Rubinelli, W. Evan Chaney, Hilary O. Pavlidis, Michael H. Kogut, Steven C. Ricke
Software Mentions: 1
Published: over 6 years ago

10.3390/toxics8030055

Effects of MP Polyethylene Microparticles on Microbiome and Inflammatory Response of Larval Zebrafish
Cited by: 16
Author(s): Nicholas Kurchaba, Bryan J. Cassone, Caleb Northam, Bernadette F. Ardelli, Christophe M. R. LeMoine
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0124162

Macroalgae Inhibits Larval Settlement and Increases Recruit Mortality at Ningaloo Reef, Western Australia
Cited by: 51
Author(s): Fiona J. Webster, Russell C. Babcock, M. van Keulen, N.R. Loneragan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0228171

Sugar, amino acid and inorganic ion profiling of the honeydew from different hemipteran species feeding on Abies alba and Picea abies
Cited by: 26
Author(s): Basel Shaaban, Victoria Seeburger, Annette Schroeder, Gertrud Lohaus
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0091881

Similar Resilience Attributes in Lakes with Different Management Practices
Cited by: 24
Author(s): Didier L. Baho, Stina Drakare, Richard K. Johnson, Craig R. Allen, David G. Angeler
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0091841

Large-Scale Assessment of Mediterranean Marine Protected Areas Effects on Fish Assemblages
Cited by: 139
Author(s): Paolo Guidetti, Pasquale Baiata, Enric Ballesteros, Antonio Franco, Bernat Hereu, Enrique Macpherson, Fiorenza Micheli, António Pais, Pieraugusto Panzalis, Andrew A. Rosenberg, Michel Zabala, Enric Sala
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0153192

Using Stable Isotopes to Infer the Impacts of Habitat Change on the Diets and Vertical Stratification of Frugivorous Bats in Madagascar
Cited by: 12
Author(s): Kim E. Reuter, Abigail R. Wills, Raymond W. Lee, Erik E. Cordes, Brent J. Sewall
Software Mentions: 1
Published: over 10 years ago

10.1186/s12866-020-01860-1

Unveiling protist diversity associated with the Pacific oyster Crassostrea gigas using blocking and excluding primers
Cited by: 4
Author(s): Camille Clérissi, Laure Guillou, Jean-Michel Escoubas, Ève Toulza
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.01403

Repeated Inoculation of Young Calves With Rumen Microbiota Does Not Significantly Modulate the Rumen Prokaryotic Microbiota Consistently but Decreases Diarrhea
Cited by: 18
Author(s): Dengpan Bu, Xin Zhang, Lu Ma, Tansol Park, Lingling Wang, Mengzhi Wang, Jianchu Xu, Zhongtang Yu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0205075

Passive acoustics and sound recognition provide new insights on status and resilience of an iconic endangered marsupial (koala Phascolarctos cinereus) to timber harvesting
Cited by: 25
Author(s): Bradley Law, Traecey Brassil, Leroy Gonsalves, Paul Roe, Anthony Truskinger, Anna McConville
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2017.00175

Diversity and Distribution of Freshwater Aerobic Anoxygenic Phototrophic Bacteria across a Wide Latitudinal Gradient
Cited by: 25
Author(s): Isabel Ferrera, Hugo Sarmento, John C. Priscu, Amy Chiuchiolo, José M. González, Hans‐Peter Grossart
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0143637

Infaunal Benthic Communities from the Inner Shelf off Southwestern Africa Are Characterised by Generalist Species
Cited by: 3
Author(s): Nina Steffani, Safiyya Sedick, John C. Rogers, Mark J. Gibbons
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2018.00015

Distribution of Archaeal Communities along the Coast of the Gulf of Finland and Their Response to Oil Contamination
Cited by: 25
Author(s): Lijuan Yan, Dan Yu, Nan Hui, Eve Naanuri, Signe Viggor, А. Б. Гафаров, С. Л. Соколов, Ain Heinaru, Martin Romantschuk
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0019082

Induction of Larval Metamorphosis of the Coral Acropora millepora by Tetrabromopyrrole Isolated from a Pseudoalteromonas Bacterium
Cited by: 177
Author(s): Jan Tebben, Dianne M. Tapiolas, Cherie A. Motti, David Abrego, Andrew P. Negri, Linda L. Blackall, Peter D. Steinberg, Tilmann Harder
Software Mentions: 1
Published: over 15 years ago

10.3390/biomedicines8090349

Lung Microbiome Differentially Impacts Survival of Patients with Non-Small Cell Lung Cancer Depending on Tumor Stroma Phenotype
Cited by: 23
Author(s): О. В. Ковалева, P. A. Podlesnaya, М. А. Рашидова, Daria V. Samoilova, Anatoly Petrenko, I. B. Zborovskaya, В В Мочальникова, С. В. Черкасов, Yuriy A. Khlopko, А. О. Плотников, Alexei Gratchev
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0237335

Combining physicochemical properties and microbiome data to evaluate the water quality of South African drinking water production plants
Cited by: 10
Author(s): Tawanda Elias Maguvu, Cornelius Carlos Bezuidenhout, Rinaldo K Kritzinger, Karabo Tsholo, Moitshepi Plaatjie, Lesego Molale-Tom, Charlotte Mienie, Roelof Dirk Coertze
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0028054

Do Cues Matter? Highly Inductive Settlement Cues Don't Ensure High Post-Settlement Survival in Sea Urchin Aquaculture
Cited by: 52
Author(s): Benjamin Mos, Kenneth Lawrence Cowden, Shaun Nielsen, Symon A. Dworjanyn
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0196581

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression
Cited by: 32
Author(s): Bryony E.A. Dignam, Maureen O’Callaghan, Leo M. Condron, George A. Kowalchuk, Joy D. Van Nostrand, Jizhong Zhou, Steven A. Wakelin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0098975

Multiple Ant Species Tending Lac Insect Kerria yunnanensis (Hemiptera: Kerriidae) Provide Asymmetric Protection against Parasitoids
Cited by: 2
Author(s): Youqing Chen, Lu Zhixing, Lingling Qiao, Benjamin D. Hoffmann, Wei Zhang
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2019.00054

High-Level PM2.5/PM10 Exposure Is Associated With Alterations in the Human Pharyngeal Microbiota Composition
Cited by: 31
Author(s): Tian Qin, Furong Zhang, Haijian Zhou, Hao Ren, Yijun Du, Shengnan Liang, Fei Wang, Lihong Cheng, Xuguang Xie, Aoming Jin, Yangfeng Wu, Jinxing Zhao, Jianguo Xu
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.00413

Distributions of Extracellular Peptidases Across Prokaryotic Genomes Reflect Phylogeny and Habitat
Cited by: 47
Author(s): Trang T. H. Nguyen, David D. Myrold, Robert F. Mueller
Software Mentions: 1
Published: over 7 years ago

10.1186/s42523-019-0012-4

Looking like the locals - gut microbiome changes post-release in an endangered species
Cited by: 36
Author(s): Rowena Chong, Catherine E. Grueber, Samantha Fox, Phil Wise, Vanessa R. Barrs, Carolyn J. Hogg, Katherine Belov
Software Mentions: 1
Published: almost 7 years ago

10.3390/toxics9060126

Temperature and Aging Affect Glyphosate Toxicity and Fatty Acid Composition in Allonychiurus kimi (Lee) (Collembola)
Cited by: 4
Author(s): June Wee, Yun Sik Lee, Yongeun Kim, Jung‐Ho Son, Kijong Cho
Software Mentions: 1
Published: about 5 years ago

10.1186/s12866-021-02302-2

Skin dysbiosis in the microbiome in atopic dermatitis is site-specific and involves bacteria, fungus and virus
Cited by: 18
Author(s): Rie Dybboe Bjerre, Jacob Bak Holm, Albert Pallejà, Julie Sølberg, Lone Skov, Jeanne Duus Johansen
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0185620

Cryptic effects of biological invasions: Reduction of the aggressive behaviour of a native fish under the influence of an “invasive” biomolecule
Cited by: 15
Author(s): Laura Magliozzi, Vítor Carvalho Almada, Joana Isabel Robalo, Ernesto Mollo, Gianluca Polese, Emanuel João Gonçalves, Serena Felline, Antonio Terlizzi, Biagio D’Aniello
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0195167

First quantification of subtidal community structure at Tristan da Cunha Islands in the remote South Atlantic: from kelp forests to the deep sea
Cited by: 13
Author(s): Jennifer E. Caselle, Scott L. Hamilton, Kathryn Davis, Chris Thompson, Alan Turchik, Ryan S. Jenkinson, Doug Simpson, Enric Sala
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0184100

Epibenthic and mobile species colonisation of a geotextile artificial surf reef on the south coast of England
Cited by: 15
Author(s): Roger J.H. Herbert, K.J. Collins, J.J. Mallinson, Alice Hall, Josephine Pegg, Kathryn Ross, Leo J. Clarke, Tom Clements
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0101388

Eutrophication and Dreissena Invasion as Drivers of Biodiversity: A Century of Change in the Mollusc Community of Oneida Lake
Cited by: 14
Author(s): Vadim A. Karatayev, Alexander Y. Karatayev, Lyubov E. Burlakova, Lars G. Rudstam
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2019.01803

The Association Between Inflammaging and Age-Related Changes in the Ruminal and Fecal Microbiota Among Lactating Holstein Cows
Cited by: 16
Author(s): Guoxing Zhang, Yachun Wang, Hanpeng Luo, Qiu Wan-hua, Hai-Liang Zhang, Lirong Hu, Yajing Wang, Ganghui Dong, Gang Guo
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2016.01894

NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient
Cited by: 31
Author(s): C. Ryan Penton, Caiyun Yang, Liyou Wu, Qiong Wang, Jin Zhang, Feifei Liu, Yujia Qin, Ye Deng, Christopher L. Hemme, Tao Zheng, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2019.00808

Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development
Cited by: 19
Author(s): Pierre Methou, Iván Hernández-Ávila, Johanne Aubé, Valérie Cueff-Gauchard, Nicolas Gayet, Louis Amand, Bruce Shillito, Florence Pradillon, Marie-Anne Cambon-Bonavita
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.722626

Fungi-Bacteria Associations in Wilt Diseased Rhizosphere and Endosphere by Interdomain Ecological Network Analysis
Cited by: 14
Author(s): Lin Tan, Weiai Zeng, Yansong Xiao, Pengfei Li, Shuhang Gu, Shaolong Wu, Zhengguang Zhai, Kai Feng, Ye Deng, Qiulong Hu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2021.657754

Venomous Snakes Reveal Ecological and Phylogenetic Factors Influencing Variation in Gut and Oral Microbiomes
Cited by: 11
Author(s): Sierra N. Smith, Timothy J. Colston, Cameron D. Siler
Software Mentions: 1
Published: over 5 years ago

10.5713/ajas.19.0499

β-Carotene prevents weaning-induced intestinal inflammation by modulating gut microbiota in piglets
Cited by: 30
Author(s): Ruonan Li, Lingqian Li, Hong Pan, Wuying Lang, Junnan Hui, Yang Yu, Xin Zheng
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.617066

Do Long-Term Conservation Pasture Management Practices Influence Microbial Diversity and Antimicrobial Resistant Genes in Runoff?
Cited by: 2
Author(s): Yichao Yang, Amanda J. Ashworth, Lisa M. Durso, Mary C. Savin, Jennifer M. DeBruyn, Kimberly J. Cook, P. Moore, Phillip R. Owens
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-021-02200-7

Correction to: Aging progression of human gut microbiota
Cited by: 2
Author(s): Congmin Xu, Huaiqiu Zhu, Peng Qiu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0148922

Chemical Tools of Octopus maya during Crab Predation Are Also Active on Conspecifics
Cited by: 14
Author(s): Dawrin Pech-Puch, Honorio Cruz-López, Cindy Canche-Ek, Gabriela Campos-Espinosa, Elpidio García, Maité Mascaró, Carlos Rosas, Daniel Chávez‐Velasco, Sergio Rodrı́guez-Morales
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0159131

Temporal and Spatial Variation of Soil Bacteria Richness, Composition, and Function in a Neotropical Rainforest
Cited by: 24
Author(s): Stephanie N. Kivlin, Christine V. Hawkes
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0200960

Drivers of reef shark abundance and biomass in the Solomon Islands
Cited by: 17
Author(s): Jordan Goetze, Tim Langlois, Joe McCarter, Colin A. Simpfendorfer, Alec Hughes, Jacob Tingo Leve, Stacy D. Jupiter
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0076441

Tolerance of Sponge Assemblages to Temperature Anomalies: Resilience and Proliferation of Sponges following the 1997–8 El-Niño Southern Oscillation
Cited by: 37
Author(s): Francisco Kelmo, James J. Bell, Martin J. Attrill
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2019.01278

Latitudinal Variation in the Molecular Diversity and Community Composition of Symbiodiniaceae in Coral From the South China Sea
Cited by: 40
Author(s): Biao Chen, Kefu Yu, Jiayuan Liang, Wen Huang, Guanghua Wang, Hongfei Su, Zhenjun Qin, Xueyong Huang, Zhiyi Pan, Wenwen Luo, Yingxin Luo, Yinghui Wang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0092384

Isotopes and Trace Elements as Natal Origin Markers of Helicoverpa armigera – An Experimental Model for Biosecurity Pests
Cited by: 33
Author(s): Peter Holder, Karen Armstrong, Robert Van Hale, Marc-Alban Millet, Russell Frew, Tim J. Clough, Joel A. Baker
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0163717

The Bacterial Signature of Leptospermum scoparium (Mānuka) Reveals Core and Accessory Communities with Bioactive Properties
Cited by: 24
Author(s): Wisnu Adi Wicaksono, E. Eirian Jones, Jana Monk, Hayley J. Ridgway
Software Mentions: 1
Published: almost 10 years ago

10.3390/toxins12080517

Varying Protein Levels Influence Metabolomics and the Gut Microbiome in Healthy Adult Dogs
Cited by: 26
Author(s): Eden Ephraim, Chun‐Yen Cochrane, Dennis E. Jewell
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.612135

Active Anaerobic Archaeal Methanotrophs in Recently Emerged Cold Seeps of Northern South China Sea
Cited by: 8
Author(s): Tingting Zhang, Xu Xiao, Songze Chen, Jing Zhao, Zongheng Chen, J. Feng, Qianyong Liang, Tommy J. Phelps, Chuanlun Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0187852

The abundance of health-associated bacteria is altered in PAH polluted soils—Implications for health in urban areas?
Cited by: 37
Author(s): Nan Hui, Mira Grönroos, Sari Kauppi, Tomasz Płociniczak, Marja I. Roslund, Polina Galitskaya, Olli H. Laitinen, Heikki Hyöty, Ari Jumpponen, Rauni Strömmer, Martin Romantschuk, Nan Hui, Aki Sinkkonen
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2019.01122

Blood Microbial Communities During Pregnancy Are Associated With Preterm Birth
Cited by: 20
Author(s): Young Ah You, Jae Young Yoo, Eun Jin Kwon, Young Ju Kim
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0239051

The red flour beetle Tribolium castaneum: A model for host-microbiome interactions
Cited by: 5
Author(s): Aparna Agarwal, Deepa Agashe
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.00028

Spring Water of an Alpine Karst Aquifer Is Dominated by a Taxonomically Stable but Discharge-Responsive Bacterial Community
Cited by: 21
Author(s): Domenico Savio, Philipp Stadler, Georg H. Reischer, Katalin Demeter, Rita Linke, Alfred Paul Blaschke, Robert L. Mach, Alexander K. T. Kirschner, Hermann Stadler, Andreas H. Farnleitner
Software Mentions: 1
Published: over 7 years ago

10.3390/nu11092128

New and Preliminary Evidence on Altered Oral and Gut Microbiota in Individuals with Autism Spectrum Disorder (ASD): Implications for ASD Diagnosis and Subtyping Based on Microbial Biomarkers
Cited by: 82
Author(s): Xuejun Kong, Jun Li, Murat Çetinbaş, Ruslan I. Sadreyev, Madelyn Koh, Hui Yu Huang, Adetaye Adeseye, Puhan He, Junli Zhu, H. Russell, Clara Hobbie, Kevi Liu, Andrew B. Onderdonk
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.00176

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core
Cited by: 61
Author(s): D. L. Leite, Pedro N. Leão, Amana Garrido, Ulysses Lins, Henrique F. Santos, Débora O. Pires, Clovis B. Castro, Jan Dirk van Elsas, Carla Zilberberg, Alexandre Soares Rosado, Raquel S. Peixoto
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0022396

Oyster Reefs as Natural Breakwaters Mitigate Shoreline Loss and Facilitate Fisheries
Cited by: 259
Author(s): Steven B. Scyphers, Sean P. Powers, Kenneth L. Heck, Dorothy Byron
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0096659

Lactobacillus crispatus Dominant Vaginal Microbiome Is Associated with Inhibitory Activity of Female Genital Tract Secretions against Escherichia coli
Cited by: 80
Author(s): Jeny Ghartey, Benjamin Smith, Zigui Chen, Niall Buckley, Yungtai Lo, Adam J. Ratner, Betsy C. Herold, Robert D. Burk
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0082229

Predation Limits Spread of Didemnum vexillum into Natural Habitats from Refuges on Anthropogenic Structures
Cited by: 38
Author(s): Barrie M. Forrest, Lauren Fletcher, Javier Atalah, Richard F. Piola, Grant A. Hopkins
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0170622

Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients
Cited by: 92
Author(s): Michael J. Cox, Elena Turek, Catherine Hennessy, Ghazala Mirza, Phillip James, Meg Coleman, Andrew Jones, Robert Wilson, Diana Bilton, William Cookson, Miriam F. Moffatt, Michael R. Loebinger
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0042810

Denitrification and Anammox in Tropical Aquaculture Settlement Ponds: An Isotope Tracer Approach for Evaluating N2 Production
Cited by: 24
Author(s): Sarah Castine, Dirk V. Erler, Lindsay Trott, Nicholas A. Paul, Rocky de Nys, Bradley D. Eyre
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0144204

Context-Dependent Diversity-Effects of Seaweed Consumption on Coral Reefs in Kenya
Cited by: 14
Author(s): Austin T. Humphries, Christopher D. McQuaid, Tim R. McClanahan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0064133

Home Life: Factors Structuring the Bacterial Diversity Found within and between Homes
Cited by: 266
Author(s): Robert R. Dunn, Noah Fierer, Jessica B. Henley, Jonathan W. Leff, Holly L. Menninger
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2019.01655

Fecal and Mucosal Microbiota Profiling in Irritable Bowel Syndrome and Inflammatory Bowel Disease
Cited by: 127
Author(s): Alessandra Lo Presti, Francesca Zorzi, Federica Del Chierico, Annamaria Altomare, Silvia Cocca, Alessandra Avola, Fabiola De Biasio, Alessandra Russo, Eleonora Cella, Sofia Reddel, Emma Calabrese, Livia Biancone, Giovanni Monteleone, Michele Cicala, Silvia Angeletti, Massimo Ciccozzi, Lorenza Putignani, Michele Pier Luca Guarino
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0245219

Hepatic steatosis relates to gastrointestinal microbiota changes in obese girls with polycystic ovary syndrome
Cited by: 12
Author(s): Beza Jobira, Daniel N. Frank, Lori Silveira, Laura Pyle, Megan M. Kelsey, Yesenia Garcia‐Reyes, Charles E. Robertson, Diana Ir, Kristen J. Nadeau, Melanie Cree‐Green
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-015-0622-2

Colonization potential to reconstitute a microbe community in patients detected early after fecal microbe transplant for recurrent C. difficile
Cited by: 18
Author(s): Ranjit Kumar, Craig L. Maynard, Peter Eipers, Kelly T. Goldsmith, Travis Ptacek, James Grubbs, Paula Dixon, Donna Howard, David K. Crossman, Michael R. Crowley, William H. Benjamin, Elliot J. Lefkowitz, Casey T. Weaver, Jorge Martín Rodríguez, Casey D. Morrow
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0171715

Variations in the structural and functional diversity of zooplankton over vertical and horizontal environmental gradients en route to the Arctic Ocean through the Fram Strait
Cited by: 24
Author(s): Marta Głuchowska, Emilia Trudnowska, Ilona Goszczko, A. M. Kubiszyn, Katarzyna Błachowiak‐Samołyk, Waldemar Walczowski, Sławomir Kwaśniewski
Software Mentions: 1
Published: over 9 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292