cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1038/srep12263

Water regime history drives responses of soil Namib Desert microbial communities to wetting events
Cited by: 48
Author(s): Aline Frossard, Jean‐Baptiste Ramond, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-019-49096-y

Miltefosine treatment reduces visceral hypersensitivity in a rat model for irritable bowel syndrome via multiple mechanisms
Cited by: 13
Author(s): Sara Botschuijver, Sophie A. van Diest, Isabelle van Thiel, Rafael Simone Saia, Anne S. Strik, Zhumei Yu, Daniele Maria-Ferreira, Olaf Welting, Dániel Keszthelyi, Gary Jennings, Sigrid E. M. Heinsbroek, Ronald P.J. Oude Elferink, Frank Schuren, Wouter J. de Jonge, René M. van den Wijngaard
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-49220-y

Plumage iridescence is associated with distinct feather microbiota in a tropical passerine
Cited by: 5
Author(s): Veronika Javůrková, Erik D Enbody, Jakub Kreisinger, Kryštof Chmel, Jakub Mrázek, Jordan Karubian
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49893-5

Remission in Crohn’s disease is accompanied by alterations in the gut microbiota and mucins production
Cited by: 28
Author(s): Daniéla Oliveira Magro, Andrey dos Santos, Dioze Guadagnini, Flavia Moreira de Godoy, Sylvia Helena Monteiro Silva, Wilson José Fernandes Lemos, Nicola Vitulo, Sandra Torriani, Lílian Vital Pinheiro, Carlos Augusto Real Martinez, Mário José Abdalla Saad, Cláudio Saddy Rodrigues Coy
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49823-5

Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome
Cited by: 23
Author(s): Carrie E. Jung, Jessica Chopyk, Ji Hyun Shin, Emily S. Lukacz, Linda Brubaker, Leila K. Schwanemann, Rob Knight, Alan J. Wolfe, David T. Pride
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49832-4

Distinct responses from bacterial, archaeal and fungal streambed communities to severe hydrological disturbances
Cited by: 19
Author(s): Giulia Gionchetta, Anna M. Romaní, Francesc Oliva, Joan Artigas
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49854-y

Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents
Cited by: 46
Author(s): Paula Harkes, Afnan Khalil Ahmad Suleiman, S.J.J. van den Elsen, J.J. de Haan, M.H.M. Holterman, Eiko E. Kuramae, J. Helder
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49555-6

Disentangling the environmental impact of different human disturbances: a case study on islands
Cited by: 16
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-50607-0

Ecotoxicological hazard of a mixture of glyphosate and aminomethylphosphonic acid to the mussel Mytilus galloprovincialis (Lamarck 1819)
Cited by: 26
Author(s): Valerio Matozzo, Marco Munari, Laura Masiero, Livio Finos, María Gabriella Marin
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51291-w

Sexual and genotypic variation in terpene quantitative and qualitative profiles in the dioecious shrub Baccharis salicifolia
Cited by: 7
Author(s): Xoaquín Moreira, Luis Abdala‐Roberts, Colleen S. Nell, Carla Vázquez‐González, Jessica D. Pratt, Ken Keefover‐Ring, Kailen A. Mooney
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-50952-0

The capacity of wastewater treatment plants drives bacterial community structure and its assembly
Cited by: 22
Author(s): Young Kyung Kim, Keunje Yoo, Min Sung Kim, Il Ki Han, Minjoo Larry Lee, Bo Ram Kang, Tae Kwon Lee, Joonhong Park
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51570-6

Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab
Cited by: 19
Author(s): Jan Kopecký, Zuzana Samkova, Ensyeh Sarikhani, Martina Kyselková, Marek Omelka, Václav Krištůfek, Jiří Diviš, G. L. Grundmann, Yvan Moënne‐Loccoz, Markéta Ságová-Marečková
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51525-x

Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet
Cited by: 3
Author(s): Tom Houben, John Penders, Yvonne Oligschlaeger, Inês Magro dos Reis, Marc Jan Bonder, Debby P. Y. Koonen, Jingyuan Fu, Marten H. Hofker, Ronit Shiri-Sverdlov
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51709-5

Competition structured a Late Cretaceous megaherbivorous dinosaur assemblage
Cited by: 26
Author(s): Jordan C. Mallon
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-53060-1

Limnological effects of a large Amazonian run-of-river dam on the main river and drowned tributary valleys
Cited by: 26
Author(s): Rafael M. Almeida, Stephen K. Hamilton, Emma J. Rosi‐Marshall, João Durval Arantes, Nathan Barros, Gina Boemer, Anderson Gripp, Vera L. M. Huszar, Pedro C. Junger, M. G. de Lima, F. Pacheco, Dirceu Tornavoi de Carvalho, Alexander J. Reisinger, Lúcia Helena Sampaio da Silva, Fábio Roland
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-53073-w

Microbial changes in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients
Cited by: 31
Author(s): Alexa M. G. A. Laheij, Judith E. Raber-Durlacher, Renée G. A. Koppelmans, Marie-Charlotte D.N.J.M. Huysmans, Carin Potting, Stephanie J. M. van Leeuwen, Mette D. Hazenberg, Michael T. Brennan, Inger von Bültzingslöwen, Jan‐Erik Johansson, J.J. de Soet, Thijs M. Haverman, Mark J. Buijs, Bernd W. Brandt, F.R. Rozema, Nicole M. A. Blijlevens, Egija Zaura
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms8060936

A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy)
Cited by: 19
Author(s): Claudia Leoni, Mariateresa Volpicella, Bruno Fosso, Caterina Manzari, Elisabetta Piancone, Maria C.G. Dileo, Erika Arcadi, Michail M. Yakimov, Graziano Pesole, Luigi R. Ceci
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-017-0381-4

The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease
Cited by: 90
Author(s): Alexa A. Pragman, Tianmeng Lyu, Joshua A. Baller, Trevor Gould, Rosemary F. Kelly, Cavan Reilly, Richard E. Isaacson, Chris H. Wendt
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-53769-z

Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome
Cited by: 16
Author(s): Rafael José Vivero, Marcela Villegas-Plazas, Gloria Cadavid-Restrepo, Claudia Ximena Moreno Herrera, Sandra Uribe, Howard Junca
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-021-01066-1

Synergistic action of the gut microbiota in environmental RNA interference in a leaf beetle
Cited by: 27
Author(s): Letian Xu, Shijing Xu, Liuwei Sun, Yiqiu Zhang, Jing Luo, Ralph Bock, Jiang Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-54771-1

Effects of Long-term Cotton Continuous Cropping on Soil Microbiome
Cited by: 29
Author(s): Hui Xi, Jili Shen, Zhong Qu, Dingyi Yang, Shiming Liu, Xiaoqin Nie, Lu Zhu
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55063-4

Land use change effects on diversity of soil bacterial, Acidobacterial and fungal communities in wetlands of the Sanjiang Plain, northeastern China
Cited by: 57
Author(s): Xin Sui, Rongtao Zhang, Beat Frey, Libin Yang, Mai‐He Li, Hongwei Ni
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-54869-6

Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin’s finches on Santa Cruz Island
Cited by: 33
Author(s): Wesley T. Loo, Jefferson García-Loor, Rachael Y. Dudaniec, Sonia Kleindorfer, Colleen M. Cavanaugh
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55290-9

Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn’s disease
Cited by: 84
Author(s): Kinga Kowalska-Duplaga, Tomasz Gosiewski, Przemysław Kapusta, Agnieszka Sroka-Oleksiak, Andrzej Wędrychowicz, Stanisław Pieczarkowski, Agnieszka H. Ludwig-Słomczyńska, Paweł Wołkow, Krzysztof Fyderek
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55270-z

Phylogeographic patterns of intertidal arthropods (Acari, Oribatida) from southern Japanese islands reflect paleoclimatic events
Cited by: 8
Author(s): Tobias Pfingstl, Maximilian Wagner, Shimpei F. Hiruta, Stephan Koblmüller, Wataru Hagino, Satoshi Shimano
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55720-8

Postmenopause as a key factor in the composition of the Endometrial Cancer Microbiome (ECbiome)
Cited by: 43
Author(s): Dana M. Walsh, Alexis N. Hokenstad, Jun Chen, Jaeyun Sung, Gregory D. Jenkins, Nicholas Chia, Heidi Nelson, Andrea Mariani, Marina Walther-Antonio
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55408-z

Denitrification Aligns with N2 Fixation in Red Sea Corals
Cited by: 24
Author(s): Arjen Tilstra, Yusuf C. El-Khaled, Florian Roth, Nils Rädecker, Claudia Pogoreutz, Christian R. Voolstra, Christian Wild
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-56290-5

Fungal and bacterial diversity of Svalbard subglacial ice
Cited by: 44
Author(s): Laura Perini, Cene Gostinčar, Nina Gunde‐Cimerman
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-56741-z

Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments
Cited by: 27
Author(s): Alex Gobbi, Ifigeneia Kyrkou, Elisa Filippi, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40168-018-0478-4

Gut microbiota in experimental murine model of Graves’ orbitopathy established in different environments may modulate clinical presentation of disease
Cited by: 52
Author(s): Giulia Masetti, Sajad Moshkelgosha, Hedda-Luise Köhling, Danila Covelli, J. Paul Banga, Utta Berchner‐Pfannschmidt, Mareike Horstmann, Salvador Díaz‐Cano, Gina-Eva Goertz, Sue Plummer, Anja Eckstein, Marian Ludgate, Filippo Biscarini, Julian R. Marchesi
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-020-00833-w

Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions
Cited by: 55
Author(s): Stien Beirinckx, Tom Viaene, Annelies Haegeman, Jane Debode, Fien Amery, Sophie Vandenabeele, Hilde Nelissen, Dirk Inzé, Raúl Y. Tito, Jeroen Raes, Caroline De Tender, Sofie Goormachtig
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-021-01034-9

Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data
Cited by: 14
Author(s): Zhengyi Zhu, Glen A. Satten, Caroline Mitchell, Yi‐Juan Hu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-58402-y

Wheat dwarfing influences selection of the rhizosphere microbiome
Cited by: 41
Author(s): Vanessa Nessner Kavamura, Rebekah J. Robinson, David Hughes, Ian M. Clark, Maike Rossmann, I. S. de Melo, P. R. Hirsch, Rodrigo Mendes, Tim H. Mauchline
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-58525-2

Fine-scale species distribution modelling and genotyping by sequencing to examine hybridisation between two narrow endemic plant species
Cited by: 11
Author(s): JE Ball, Todd Robinson, Grant Wardell‐Johnson, Jessica Bovill, Margaret Byrne, Paul Nevill
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40168-018-0448-x

Drinking alcohol is associated with variation in the human oral microbiome in a large study of American adults
Cited by: 146
Author(s): Xiaozhou Fan, Brandilyn A. Peters, Eric J. Jacobs, Susan M. Gapstur, Mark P. Purdue, Neal D. Freedman, Alexander V. Alekseyenko, Jing Wu, Liying Yang, Zhiheng Pei, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58863-1

Wild blueberry proanthocyanidins shape distinct gut microbiota profile and influence glucose homeostasis and intestinal phenotypes in high-fat high-sucrose fed mice
Cited by: 76
Author(s): Maria Carolina Rodríguez-Daza, Laurence Daoust, Lemia Boutkrabt, Geneviève Pilon, Thibault Varin, Stéphanie Dudonné, Émile Lévy, André Marette, Denis Roy, Yves Desjardins
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-59104-1

Toxic tall fescue grazing increases susceptibility of the Angus steer fecal microbiota and plasma/urine metabolome to environmental effects
Cited by: 10
Author(s): Ryan S. Mote, Nicholas S. Hill, Joseph H. Skarlupka, ViLinh Tran, Douglas I. Walker, Zachary B. Turner, Zachary P. Sanders, Dean P. Jones, Garret Suen, Nikolay M. Filipov
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-59878-4

A comparison of bee communities between primary and mature secondary forests in the longleaf pine ecosystem
Cited by: 12
Author(s): Michael D. Ulyshen, Scott Pokswinski, J. Kevin Hiers
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60131-1

Fecal bacteria and metabolite responses to dietary lysozyme in a sow model from late gestation until lactation
Cited by: 11
Author(s): Shengyu Xu, Jiankai Shi, Yanpeng Dong, Zimei Li, Xiaoling Wu, Yan Lin, Lianqiang Che, Jian Li, Bin Feng, Zhengfeng Fang, Yong Zhuo, Jianping Wang, De Wu, Zhihua Ren, Yanping Shen
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60449-w

Characterization of intratissue bacterial communities and isolation of Escherichia coli from oral lichen planus lesions
Cited by: 16
Author(s): Keumjin Baek, Jaewon Lee, Ahreum Lee, Jun-Ho Lee, Hye‐Jung Yoon, Hee Kyung Park, Jongsik Chun, Youngnim Choi
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60362-2

Ganoderma lucidum cultivation affect microbial community structure of soil, wood segments and tree roots
Cited by: 14
Author(s): Fei Ren, Yuguang Zhang, Hai Yu, Yong-An Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60591-5

Insect pollination: an ecological process involved in the assembly of the seed microbiota
Cited by: 27
Author(s): Alberto Prado, Brice Marolleau, Bernard Vaissière, Matthieu Barret, Gloria Torres-Cortés
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60052-z

Enrichment and characterisation of ethanol chain elongating communities from natural and engineered environments
Cited by: 24
Author(s): Pieter Candry, Shengle Huang, José M. Carvajal-Arroyo, Korneel Rabaey, Ramón Ganigué
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40168-019-0727-1

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia
Cited by: 124
Author(s): Juan E. Pérez‐Jaramillo, Mattias de Hollander, Camilo A. Ramírez, Rodrigo Mendes, Jos M. Raaijmakers, Víctor J. Carrión
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-60862-1

Difference in post-stress recovery of the gut microbiome and its altered metabolism after chronic adolescent stress in rats
Cited by: 19
Author(s): Mengyang Xu, Chen Wang, Kristen N. Krolick, Haifei Shi, Jiangjiang Zhu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-61407-2

Effects of enrofloxacin treatment on the bacterial microbiota of milk from goats with persistent mastitis
Cited by: 10
Author(s): Richard Costa Polveiro, Pedro Marcus Pereira Vidigal, Tiago Antônio de Oliveira Mendes, Ricardo Seiti Yamatogi, Magna Coroa Lima, Maria Aparecida Scatamburlo Moreira
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-018-0525-1

Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion
Cited by: 69
Author(s): Késia Silva Lourenço, Afnan Khalil Ahmad Suleiman, Agata Pijl, Johannes A. van Veen, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 2
Published: over 6 years ago

10.3390/nu13072446

Administration with Quinoa Protein Reduces the Blood Pressure in Spontaneously Hypertensive Rats and Modifies the Fecal Microbiota
Cited by: 18
Author(s): Huimin Guo, Yuqiong Hao, Xin Fan, Aurore Richel, Nadia Everaert, Xiushi Yang
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-017-0252-z

Subgingival microbiota dysbiosis in systemic lupus erythematosus: association with periodontal status
Cited by: 112
Author(s): Jôice Dias Corrêa, Débora Cerqueira Calderaro, Gilda Aparecida Ferreira, Santuza Maria Souza de Mendonça, Gabriel R. Fernandes, E. Xiao, Antônio Lúcio Teixeira, Eugene J. Leys, Dana T. Graves, Tarcı́lia Aparecida Silva
Software Mentions: 2
Published: over 7 years ago

10.1128/mBio.02336-20

The Native Microbiome is Crucial for Offspring Generation and Fitness of <i>Aurelia aurita</i>
Cited by: 21
Author(s): Nancy Weiland‐Bräuer, Nicole Pinnow, Daniela Langfeldt, Anna Krystyna Roik, Simon Güllert, Cynthia Maria Chibani, Thorsten B.H. Reusch, Ruth A. Schmitz
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40168-020-00913-x

Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status
Cited by: 57
Author(s): Jordi Mayneris‐Perxachs, María Arnoriaga-Rodríguez, D. Luque-Córdoba, Feliciano Priego‐Capote, Vicente Pérez‐Brocal, Andrés Moya, Aurelijus Burokas, Rafaël Maldonado, José Manuel Fernández-Real
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-020-00908-8

Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter
Cited by: 30
Author(s): Aaron McKenna, Umer Zeeshan Ijaz, Carmel Kelly, Mark Linton, William T. Sloan, Brian D. Green, Ursula Lavery, Nick Dorrell, Brendan W. Wren, Anne Richmond, Nicolae Corcionivoschi, Ozan Gundogdu
Software Mentions: 2
Published: about 4 years ago

10.1128/mBio.00294-21

Effect of HIV/HAART and Other Clinical Variables on the Oral Mycobiome Using Multivariate Analyses
Cited by: 13
Author(s): Paul L. Fidel, Zach A. Thompson, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Laura Cook, Shahr B. Hashmi, Daniel J. Lisko, Chiranjit Mukherjee, José Antonio Vázquez, Michael E. Hagensee, Ann L. Griffen, Eugene J. Leys, Clifford J. Beall
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-018-0416-5

Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia
Cited by: 88
Author(s): Bruce A. Rosa, Taniawati Supali, Lincoln Gankpala, Yenny Djuardi, Erliyani Sartono, Yanjiao Zhou, Kerstin Fischer, John Martin, Rahul Tyagi, Fatorma K. Bolay, Peter U. Fischer, Maria Yazdanbakhsh, Makedonka Mitreva
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40168-018-0497-1

Network hubs in root-associated fungal metacommunities
Cited by: 94
Author(s): Hirokazu Toju, Akifumi S. Tanabe, Hirotoshi Sato
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-021-01138-2

Disease-induced changes in plant microbiome assembly and functional adaptation
Cited by: 116
Author(s): Min Gao, Chao Xiong, Cheng Gao, Clement K. M. Tsui, Mengmeng Wang, Xin Zhou, Aimin Zhang, Lei Cai
Software Mentions: 2
Published: about 3 years ago

10.1128/mBio.01777-21

Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome
Cited by: 66
Author(s): Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G Cobián-Güemes, Madeline S Merlino, Louis J. Taylor, Abigail Glascock, Kyle Bittinger, Ceylan Tanes, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Shantan Reddy, Amy E. Baxter, Josephine R. Giles, Derek A. Oldridge, Nuala J. Meyer, E. John Wherry, John E. McGinniss, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00327-17

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young
Cited by: 130
Author(s): Gaorui Bian, Gregory B. Gloor, Aihua Gong, Changsheng Jia, Wei Zhang, Jun Hu, Hong Zhang, Yumei Zhang, Zhiyong Zhou, Jiangao Zhang, Jeremy P. Burton, Gregor Reid, Yongliang Xiao, Qiang Zeng, Kaiping Yang, Jiangang Li
Software Mentions: 2
Published: about 7 years ago

10.1128/mSphere.00366-17

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon
Cited by: 8
Author(s): Bruno S. de O. Silva, Felipe H. Coutinho, Gustavo Bueno Gregoracci, Luciana Leomil, Louisi Souza de Oliveira, Adriana M. Fróes, Diogo A. Tschoeke, Ana Carolina Soares, Anderson de Souza Cabral, Nicholas D. Ward, Jeffrey E. Richey, Alex V. Krusche, Patricia L. Yager, Carlos Eduardo de Rezende, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 2
Published: about 7 years ago

10.1128/mSphereDirect.00527-17

Subgingival Microbiome Colonization and Cytokine Production during Early Dental Implant Healing
Cited by: 12
Author(s): Jeffrey B. Payne, Paul G. Johnson, Car Reen Kok, João Carlos Gomes-Neto, Amanda E. Ramer‐Tait, Marian J. Schmid, Robert W. Hutkins
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSphere.00418-17

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish
Cited by: 48
Author(s): Anti Vasemägi, Marko Visse, Veljo Kisand
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40168-019-0726-2

The occurrence of Listeria monocytogenes is associated with built environment microbiota in three tree fruit processing facilities
Cited by: 49
Author(s): Xuanping Tan, Taejung Chung, Yi Chen, Dumitru Macarisin, Luke F. LaBorde, Jasna Kovač
Software Mentions: 2
Published: over 5 years ago

10.1128/mSphere.00229-18

Potential Mechanism of Detoxification of Cyanide Compounds by Gut Microbiomes of Bamboo-Eating Pandas
Cited by: 49
Author(s): Lifeng Zhu, Yang Zhang, Ru Yao, Liangliang Xu, Hua Chen, Xun Gu, Tonggui Wu, Xiangdong Yang
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-021-01032-x

Important ecophysiological roles of non-dominant Actinobacteria in plant residue decomposition, especially in less fertile soils
Cited by: 62
Author(s): Yuanyuan Bao, Jan Dolfing, Zhiying Guo, Ruirui Chen, Meng Wu, Zhongpei Li, Xiangui Lin, Youzhi Feng
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00679-18

Comparison of Subtyping Approaches and the Underlying Drivers of Microbial Signatures for Chronic Rhinosinusitis
Cited by: 16
Author(s): Kristi Biswas, Raewyn Cavubati, Shan Gunaratna, Michael Hoggard, Sharon Waldvogel-Thurlow, Jiwon Hong, Kevin Chang, Brett Wagner Mackenzie, Michael W. Taylor, Richard Douglas
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSphere.00446-19

Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life
Cited by: 4
Author(s): T. M. Royalty, Andrew D. Steen
Software Mentions: 2
Published: over 5 years ago

10.3390/nu12113225

Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats
Cited by: 24
Author(s): Sanna Lensu, Raghunath Pariyani, Elina Mäkinen, Baoru Yang, Wisam Saleem, Eveliina Munukka, Maarit Lehti, Anastasiia Driuchina, Jere Lindén, Marja Tiirola, Leo Lahti, Satu Pekkala
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-021-01118-6

Plant developmental stage drives the differentiation in ecological role of the maize microbiome
Cited by: 120
Author(s): Chao Xiong, Brajesh K. Singh, Ji‐Zheng He, Yong Han, Peipei Li, Li-Hua Wan, Guo-Zhong Meng, Si-Yi Liu, Juntao Wang, Chuanfa Wu, An‐Hui Ge, Limei Zhang
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-017-0366-3

Normalization of the microbiota in patients after treatment for colonic lesions
Cited by: 53
Author(s): Marc A. Sze, Nielson T. Baxter, Mack T. Ruffin, Mary A.M. Rogers, Patrick D. Schloss
Software Mentions: 2
Published: about 7 years ago

10.3390/nu12113451

Maternal Linoleic Acid Overconsumption Alters Offspring Gut and Adipose Tissue Homeostasis in Young but Not Older Adult Rats
Cited by: 3
Author(s): Justine Marchix, Charlène Alain, Sandrine Le Gall‐David, Luis A. Amador, Céline Druart, Nathalie M. Delzenne, Frédérique Barloy-Hubler, Philippe Legrand, Gaëlle Boudry
Software Mentions: 2
Published: about 4 years ago

10.3390/nu12082364

Gut Microbiota Associations with Metabolic Health and Obesity Status in Older Adults
Cited by: 32
Author(s): Xiaozhong Zhong, Janas M. Harrington, Seán Millar, Ivan J. Perry, Paul W. O’Toole, Catherine M. Phillips
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-020-00810-3

Lung function and microbiota diversity in cystic fibrosis
Cited by: 115
Author(s): Leah Cuthbertson, Alan W. Walker, Anna Oliver, Geraint B. Rogers, Damian W. Rivett, Thomas H. Hampton, Alix Ashare, J. Stuart Elborn, Anthony De Soyza, Mary Carroll, Lucas R. Hoffman, Clare Lanyon, Samuel M. Moskowitz, George A. O’Toole, Julian Parkhill, Paul J. Planet, Charlotte C. Tenebäck, Michael Tunney, Jonathan B. Zuckerman, Kenneth D. Bruce, Christopher J. van der Gast
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-018-0510-8

The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism
Cited by: 146
Author(s): Sarah Just, Stanislas Mondot, Josef Ecker, Katrin Wegner, Eva Rath, Laura Gau, Theresa Streidl, Geneviève Héry-Arnaud, Sinah Schmidt, Till Robin Lesker, Valentin Bieth, Andreas Dunkel, Till Strowig, Thomas G. Hofmann, Dirk Haller, Gerhard Liebisch, Philippe Gérard, Sascha Rohn, Patricia Lepage, Thomas Clavel
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0223629

Microbiomes in the insectivorous bat species Mops condylurus rapidly converge in captivity
Cited by: 16
Author(s): Kathryn M. Edenborough, Andre Mu, Kristin Mühldorfer, Johanna Lechner, Angelika Lander, Marcel Bokelmann, Emmanuel Couacy‐Hymann, Aleksandar Radonić, Andreas Kurth
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0041538

Bait Effects in Sampling Coral Reef Fish Assemblages with Stereo-BRUVs
Cited by: 85
Author(s): Stacey R. Dorman, Euan S. Harvey, Stephen J. Newman
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0187590

Do microplastic particles affect Daphnia magna at the morphological, life history and molecular level?
Cited by: 133
Author(s): Hannes K. Imhof, Jakub Rusek, M. Thiel, Justyna Wolinska, Christian Laforsch
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0041938

Communities of Arbuscular Mycorrhizal Fungi Detected in Forest Soil Are Spatially Heterogeneous but Do Not Vary throughout the Growing Season
Cited by: 137
Author(s): John Davison, Maarja Öpik, Martin Zobel, Martti Vasar, Madis Metsis, Mari Moora
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0179652

Contrasting bacterial communities in two indigenous Chionochloa (Poaceae) grassland soils in New Zealand
Cited by: 14
Author(s): Jocelyn Chua Griffith, William G. Lee, David A. Orlovich, Tina C. Summerfield
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0180371

Shifts in the bacterial community composition along deep soil profiles in monospecific and mixed stands of Eucalyptus grandis and Acacia mangium
Cited by: 60
Author(s): Arthur Prudêncio de Araújo Pereira, Pedro Avelino Maia de Andrade, Daniel Bini, Ademir Durrer, Agnès Robin, J. P. Bouillet, Fernando Dini Andreote, Elke Jurandy Bran Nogueira Cardoso
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0175160

Nutrient enrichment is associated with altered nectar and pollen chemical composition in Succisa pratensis Moench and increased larval mortality of its pollinator Bombus terrestris L.
Cited by: 31
Author(s): Tobias Ceulemans, Eva Hulsmans, Wim Van den Ende, Olivier Honnay
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0189871

Ecological structure and function in a restored versus natural salt marsh
Cited by: 19
Author(s): Ryan J. Rezek, Benoît Lebreton, Blair Sterba-Boatwright, Jennifer Beseres Pollack
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0163930

Associations between an Invasive Plant (Taeniatherum caput-medusae, Medusahead) and Soil Microbial Communities
Cited by: 13
Author(s): Elise S. Gornish, Noah Fierer, Albert Barberán
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0097214

Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations
Cited by: 159
Author(s): Robert P. Dickson, John R. Erb-Downward, Christine M. Freeman, Neff Walker, Brittan S. Scales, James M. Beck, Fernando J. Martínez, Jeffrey L. Curtis, Vibha N. Lama, Gary B. Huffnagle
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0185187

Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores
Cited by: 16
Author(s): Laurent Barillé, Anthony Le Bris, Vona Méléder, Patrick Launeau, Marc Robin, Ioanna Louvrou, Lourenço Ribeiro
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0177030

Long-term fertilization determines different metabolomic profiles and responses in saplings of three rainforest tree species with different adult canopy position
Cited by: 8
Author(s): Albert Gargallo‐Garriga, S. Joseph Wright, Jordi Sardans, Míriam Pérez‐Trujillo, Michal Oravec, Kristýna Večeřová, Otmar Urban, Marcos Fernández‐Martínez, Teodor Parella, Josep Peñuelas
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0150943

Deletion of the Toll-Like Receptor 5 Gene Per Se Does Not Determine the Gut Microbiome Profile That Induces Metabolic Syndrome: Environment Trumps Genotype
Cited by: 19
Author(s): Wei Zhang, Riley Hartmann, Hein Min Tun, Charles O. Elson, Ehsan Khafipour, W. Timothy Garvey
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0163407

A Citizen Science Approach: A Detailed Ecological Assessment of Subtropical Reefs at Point Lookout, Australia
Cited by: 27
Author(s): Christiaan M Roelfsema, Ruth H. Thurstan, Maria Beger, Christine L. Dudgeon, Jennifer Loder, Éva Kovács, Michele Gallo, Jason Flower, K-Le Gomez Cabrera, Juan Carlos Ortíz, A M Lea, Diana Kleine
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0090785

Humpback Whale Populations Share a Core Skin Bacterial Community: Towards a Health Index for Marine Mammals?
Cited by: 102
Author(s): Amy Apprill, Jooke Robbins, A. Murat Eren, Adam A. Pack, Julie Réveillaud, David K. Mattila, Michael J. Moore, Misty Niemeyer, Kathleen Moore, Tracy J. Mincer
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0102920

The Role of Habitat Complexity in Community Development Is Mediated by Resource Availability
Cited by: 41
Author(s): Rachel S. Smith, Emma L. Johnston, Graeme F. Clark
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0230667

Dysbiotic oral microbiota and infected salivary glands in Sjögren’s syndrome
Cited by: 35
Author(s): Jehan Alam, Ahreum Lee, Jun-Ho Lee, Dongil Kwon, Hee Kyung Park, Jung Hyun Park, Sumin Jeon, Keumjin Baek, Jennifer Lee, Sung-Hwan Park, Youngnim Choi
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0187940

Phylogenic inference using alignment-free methods for applications in microbial community surveys using 16s rRNA gene
Cited by: 5
Author(s): Yifei Zhang, Alexander V. Alekseyenko
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0237561

Characterizing the nectar microbiome of the non-native tropical milkweed, Asclepias curassavica, in an urban environment
Cited by: 6
Author(s): Magdalena L Warren, Karin E. Kram, Kathryn Theiss
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-020-00983-x

Toothbrush microbiomes feature a meeting ground for human oral and environmental microbiota
Cited by: 8
Author(s): Ryan A. Blaustein, Lisa Marie Michelitsch, A. Glawe, Hansung Lee, Stefanie Huttelmaier, Nancy Hellgeth, Sarah Ben Maamar, Erica M. Hartmann
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0247111

Decadal (2006-2018) dynamics of Southwestern Atlantic’s largest turbid zone reefs
Cited by: 12
Author(s): Carolina D. Teixeira, Pamela M. Chiroque-Solano, Felipe Vitório Ribeiro, Lélis Antonio Carlos-Júnior, Leonardo Mitrano Neves, Paulo S. Salomon, Leonardo T. Salgado, Ludmilla N. Falsarella, Gabriel O. Cardoso, Lívia Bonetti Villela, Matheus Oliveira Freitas, Fernando C. Moraes, Alex Cardoso Bastos, Rodrigo L. Moura
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0222901

Variation in pickleweed root-associated microbial communities at different locations of a saline solid waste management unit contaminated with petroleum hydrocarbons
Cited by: 6
Author(s): Abdur Rahim Khan, Lara G. Reichmann, Jerald Conrad Ibal, Jae‐Ho Shin, Y. Liu, Harold P. Collins, Ben A. LePage, Norman Terry
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0189388

Persistent differences between coastal and offshore kelp forest communities in a warming Gulf of Maine
Cited by: 18
Author(s): Jon D. Witman, Robert W. Lamb
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0105684

HLA-B27 and Human β2-Microglobulin Affect the Gut Microbiota of Transgenic Rats
Cited by: 188
Author(s): Phoebe Lin, Mary Bach, Mark Asquith, Aaron Lee, Lakshmi Akileswaran, Patrick Stauffer, Sean Davin, Yuzhen Pan, Eric D. Cambronne, Martha L. Dorris, Justine W. Debelius, Christian L. Lauber, Gail Ackermann, Yoshiki Vázquez Baeza, Tejpal Gill, Rob Knight, Robert A. Colbert, Joel D. Taurog, Russell N. Van Gelder, James T. Rosenbaum
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0131944

Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine
Cited by: 42
Author(s): Daniel N. Frank, Elise S. Bales, Jenifer Monks, Matthew J. Jackman, Paul S. MacLean, Diana Ir, Charles E. Robertson, David J. Orlicky, James L. McManaman
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0177083

Atoll-scale patterns in coral reef community structure: Human signatures on Ulithi Atoll, Micronesia
Cited by: 9
Author(s): Nicole L. Crane, Peter A. Nelson, Avigdor Abelson, Kristin Precoda, John Rulmal, Giacomo Bernardi, Michelle J. Paddack
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0222824

Lipid and fatty acid dynamics by maternal Pacific bluefin tuna
Cited by: 10
Author(s): Yosuke Hiraoka, Yumi Okochi, Seiji Ohshimo, Tamaki Shimose, Hiroshi Ashida, Takuya Sato, Yasuhiro Ando
Software Mentions: 2
Published: about 5 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292