cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.00433

Root-Associated Fungi Shared Between Arbuscular Mycorrhizal and Ectomycorrhizal Conifers in a Temperate Forest
Cited by: 40
Author(s): Hirokazu Toju, Hirotoshi Sato
Software Mentions: 2
Published: over 8 years ago

10.3390/ijerph18168254

Soy and Frequent Dairy Consumption with Subsequent Equol Production Reveals Decreased Gut Health in a Cohort of Healthy Puerto Rican Women
Cited by: 3
Author(s): Mercedes Lacourt-Ventura, Brayan Vilanova-Cuevas, Delmarie Rivera-Rodríguez, Raysa Rosario-Acevedo, Christine Miranda, Gerónimo Maldonado-Martínez, Johanna Maysonet, Darlene Vargas, Yelitza Ruiz, Robert Hunter-Mellado, Luis A. Cubano, Suranganie Dharmawardhane, Johanna W. Lampe, Abel Baerga‐Ortiz, Filipa Godoy-Vitorino, Michelle M. Martínez-Montemayor
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.01696

From the Surface to the Deep-Sea: Bacterial Distributions across Polymetallic Nodule Fields in the Clarion-Clipperton Zone of the Pacific Ocean
Cited by: 44
Author(s): Markus V. Lindh, Brianne M. Maillot, Christine N. Shulse, Andrew J. Gooday, Diva J. Amon, Craig R. Smith, Matthew J. Church
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.00668

High-Alpine Permafrost and Active-Layer Soil Microbiomes Differ in Their Response to Elevated Temperatures
Cited by: 34
Author(s): Petra Luláková, Carla Perez-Mon, Hana Šantrůčková, Joel Ruethi, Beat Frey
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.632264

Covariance of Phytoplankton, Bacteria, and Zooplankton Communities Within Microcystis Blooms in San Francisco Estuary
Cited by: 5
Author(s): Peggy W. Lehman, Tomofumi Kurobe, Khiet Huynh, Sarah Lesmeister, Swee J. Teh
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.587979

Effects of Bacterial Supplementation on Black Soldier Fly Growth and Development at Benchtop and Industrial Scale
Cited by: 16
Author(s): Emilia Kooienga, Courtney N. Baugher, Morgan Currin, Jeffery K. Tomberlin, Heather R. Jordan
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.02832

Changes in Microbiota Across Developmental Stages of Aedes koreicus, an Invasive Mosquito Vector in Europe: Indications for Microbiota-Based Control Strategies
Cited by: 30
Author(s): Niccolò Alfano, Valentina Tagliapietra, Fausta Rosso, Mattia Manica, Daniele Arnoldi, Massimo Pindo, Annapaola Rizzoli
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.00608

Inbred Mouse Populations Exhibit Intergenerational Changes in Intestinal Microbiota Composition and Function Following Introduction to a Facility
Cited by: 16
Author(s): Jocelyn M. Choo, Paul J. Trim, Lex E. X. Leong, Guy C. J. Abell, Carly Brune, Nicole Jeffries, Steven Wesselingh, T. Neil Dear, Marten F. Snel, Geraint B. Rogers
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2018.02374

Root Microbiota in Primary and Secondary Apical Periodontitis
Cited by: 70
Author(s): Serge Bouillaguet, Daniel Manoil, Myriam Girard, Justine Louis, Nadia Gaïa, Stefano Leo, Jacques Schrenzel, Vladimir Lazarević
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0137778

Edge Effects along a Seagrass Margin Result in an Increased Grazing Risk on Posidonia australis Transplants
Cited by: 9
Author(s): John Statton, Samuel Gustin-Craig, Kingsley W. Dixon, Gary A. Kendrick
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2021.669131

Bacterial Community Spacing Is Mainly Shaped by Unique Species in the Subalpine Natural Lakes of China
Cited by: 3
Author(s): Jinxian Liu, Jiahe Su, Meiting Zhang, Luo Zhengming, Xiaoqi Li, Bo Chai
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.01583

Highly Diverse Aquatic Microbial Communities Separated by Permafrost in Greenland Show Distinct Features According to Environmental Niches
Cited by: 10
Author(s): Malin Bomberg, Lillemor Claesson Liljedahl, Tiina Lamminmäki, Anne Kontula
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2021.708990

Parasitoid Causes Cascading Effects on Plant-Induced Defenses Mediated Through the Gut Bacteria of Host Caterpillars
Cited by: 4
Author(s): Jie Wang, Charles J. Mason, Xueyang Ju, Rongrong Xue, Lu Tong, Michelle Peiffer, Yuanyuan Song, Rensen Zeng, Gary W. Felton
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2016.01064

Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics
Cited by: 30
Author(s): John G. Warden, Giorgio Casaburi, Christopher R. Omelon, Philip C. Bennett, Daniel O. Breecker, Jamie S. Foster
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2017.02451

Diversity of Microbial Communities and Quantitative Chemodiversity in Layers of Marine Sediment Cores from a Causeway (Kaichu-Doro) in Okinawa Island, Japan
Cited by: 8
Author(s): Taha Soliman, James Davis Reimer, Sung‐Yin Yang, Alejandro Villar‐Briones, Michael C. Roy, Holger Jenke‐Kodama
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.00752

Predicting the HMA-LMA Status in Marine Sponges by Machine Learning
Cited by: 130
Author(s): Lucas Moitinho‐Silva, Georg Steinert, Shaun Nielsen, Cristiane Cassiolato Pires Hardoim, Yangjun Wu, Grace P. McCormack, Susanna López‐Legentil, Román Marchant, Nicole S. Webster, Torsten Thomas, Ute Hentschel
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.664407

Bacterial and Fungal Gut Community Dynamics Over the First 5 Years of Life in Predominantly Rural Communities in Ghana
Cited by: 6
Author(s): Nelly Amenyogbe, Dennis Adu-Gyasi, Yeetey Enuameh, Kwaku Poku Asante, Dennis Gyasi Konadu, Seyram Kaali, David Dosoo, Pinaki Panigrahi, Tobias R. Kollmann, William W. Mohn, Seth Owusu‐Agyei
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.02184

13C-DNA-SIP Distinguishes the Prokaryotic Community That Metabolizes Soybean Residues Produced Under Different CO2 Concentrations
Cited by: 5
Author(s): Yanhong Wang, Zhenhua Yu, Yansheng Li, Guanghua Wang, Caixian Tang, Xiaobing Liu, Zhihuang Xie, Jian Jin
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0039634

Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages
Cited by: 86
Author(s): Ben Fitzpatrick, Euan S. Harvey, Andrew Heyward, Emily Twiggs, Jamie Colquhoun
Software Mentions: 2
Published: about 14 years ago

10.3389/fmolb.2021.676138

Establishment of Novel Prostate Cancer Risk Subtypes and A Twelve-Gene Prognostic Model
Cited by: 1
Author(s): Enchong Zhang, Fujisawa Shiori, Mo Zhang, Peng Wang, Jieqian He, Yuntian Ge, Yi Song, Liping Shan
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2019.00151

Carbon Amendments Influence Composition and Functional Capacities of Indigenous Soil Microbiomes
Cited by: 4
Author(s): Jose Pablo Dundore‐Arias, Sarah C. Castle, Laura Felice, Ruth Dill‐Macky, Linda L. Kinkel
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2020.610845

Systematic Comparisons for Composition Profiles, Taxonomic Levels, and Machine Learning Methods for Microbiome-Based Disease Prediction
Cited by: 9
Author(s): Kuncheng Song, Fred A. Wright, Yi‐Hui Zhou
Software Mentions: 2
Published: over 5 years ago

10.3389/fneur.2020.01015

Evaluation of an Immunomodulatory Probiotic Intervention for Veterans With Co-occurring Mild Traumatic Brain Injury and Posttraumatic Stress Disorder: A Pilot Study
Cited by: 26
Author(s): Lisa A. Brenner, Jeri E. Forster, Kelly A. Stearns‐Yoder, Christopher E. Stamper, Andrew J. Hoisington, Diana P. Brostow, Meredith Mealer, Hal S. Wortzel, Teodor T. Postolache, Christopher A. Lowry
Software Mentions: 2
Published: almost 6 years ago

10.3389/fneur.2020.00137

Gut Microbiota Altered in Mild Cognitive Impairment Compared With Normal Cognition in Sporadic Parkinson's Disease
Cited by: 95
Author(s): Tengzhu Ren, Yuyuan Gao, Yihui Qiu, Shuolin Jiang, Qingxi Zhang, Jiahui Zhang, Limin Wang, Yuhu Zhang, Limin Wang, Kun Nie
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2021.669410

High Fructose Corn Syrup-Moderate Fat Diet Potentiates Anxio-Depressive Behavior and Alters Ventral Striatal Neuronal Signaling
Cited by: 10
Author(s): Ayanabha Chakraborti, Christopher D. Graham, Sophie B. Chehade, Bijal Vashi, Alan Umfress, Pradeep Kurup, Benjamin Vickers, H. Alexander Chen, Rahul Telange, Taylor F. Berryhill, William Van Der Pol, Mickie L. Powell, Stephen Barnes, Casey D. Morrow, Daniel L. Smith, M. Shahid Mukhtar, Stephen A. Watts, Gregory D. Kennedy, James A. Bibb
Software Mentions: 2
Published: over 5 years ago

10.3389/fnut.2021.707763

In vitro Colon Fermentation of Soluble Arabinoxylan Is Modified Through Milling and Extrusion
Cited by: 9
Author(s): Teresa Demuth, Veronica Edwards, Lea Bircher, Christophe Lacroix, Laura Nyström, Annelies Geirnaert
Software Mentions: 2
Published: about 5 years ago

10.1007/s00442-020-04668-y

Regulation of fatty acid composition related to ontogenetic changes and niche differentiation of a common aquatic consumer
Cited by: 17
Author(s): Fernando Chaguaceda, Peter Eklöv, Kristin Scharnweber
Software Mentions: 2
Published: over 6 years ago

10.3390/jcm8020164

Fecal Microbiota Analysis in Patients Going through a Depressive Episode during Treatment in a Psychiatric Hospital Setting
Cited by: 26
Author(s): Paweł Liśkiewicz, Justyna Pełka-Wysiecka, Mariusz Kaczmarczyk, Igor Łoniewski, Michał Wroński, Agata Bąba-Kubiś, Karolina Skonieczna-Żydecka, Wojciech Marlicz, Błażej Misiak, Jerzy Samochowiec
Software Mentions: 2
Published: over 7 years ago

10.3390/jcm8081089

Gut Microbiota and Risk of Persistent Nonalcoholic Fatty Liver Diseases
Cited by: 37
Author(s): Hanna Kim, Eun-Jeong Joo, Hae Suk Cheong, Yejin Kim, Hyung-Lae Kim, Hocheol Shin, Yoosoo Chang, Seungho Ryu
Software Mentions: 2
Published: about 7 years ago

10.3390/jcm8111770

An Association of Gut Microbiota with Different Phenotypes in Chinese Patients with Rheumatoid Arthritis
Cited by: 59
Author(s): Hung‐Ting Chiang, Jiànróng Lǐ, Chun-Chi Liu, Po‐Yu Liu, Hsin‐Hua Chen, Yiming Chen, Joung‐Liang Lan, Der‐Yuan Chen
Software Mentions: 2
Published: almost 7 years ago

10.3390/jcm9051589

Major Lipids, Apolipoproteins, and Alterations of Gut Microbiota
Cited by: 18
Author(s): Kyung Eun Yun, Jimin Kim, Mi‐Hyun Kim, Eunkyo Park, Hyung-Lae Kim, Yoosoo Chang, Seungho Ryu, Hanna Kim
Software Mentions: 2
Published: over 6 years ago

10.3390/jcm9082411

Effect of Manual Therapy and Splint Therapy in People with Temporomandibular Disorders: A Preliminary Study
Cited by: 14
Author(s): Gemma Victoria Espí-López, Anna Arnal‐Gómez, Alba Cuerda Del Pino, José Benavent-Corai, Pilar Serra-Añó, Marta Inglés
Software Mentions: 2
Published: about 6 years ago

10.3390/jcm9123877

New Insights into the Microbial Profiles of Infected Root Canals in Traumatized Teeth
Cited by: 10
Author(s): Lokeshwaran Manoharan, Malin Brundin, Olena Rakhimova, Luis Chávez de Paz, Nelly Romani Vestman
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm9124068

Oral Microbiome Signatures in Hematological Cancers Reveal Predominance of Actinomyces and Rothia Species
Cited by: 11
Author(s): Jean-Luc Mougeot, Micaela F. Beckman, Holden C. Langdon, Michael T. Brennan, Farah Bahrani Mougeot
Software Mentions: 2
Published: over 5 years ago

10.1177/0022034517729998

Saliva-Derived Commensal and Pathogenic Biofilms in a Human Gingiva Model
Cited by: 33
Author(s): Jeroen Kees Buskermolen, Marleen M. Janus, Sanne Roffel, Bastiaan P. Krom, Susan Gibbs
Software Mentions: 2
Published: almost 9 years ago

10.1007/s40618-020-01424-0

Alterations of gut microbiota composition in post-finasteride patients: a pilot study
Cited by: 18
Author(s): Francesca Borgo, Angeli Dominique Macandog, Silvia Diviccaro, Eva Falvo, Silvia Giatti, Guido Cavaletti, Roberto Cosimo Melcangi
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13002-019-0301-8

Tracing chronological shifts in farmland demarcation trees in southwestern Japan: implications from species distribution patterns, folk nomenclature, and multiple usage
Cited by: 3
Author(s): Yoshinori Tokuoka, Fukuhiro Yamasaki, Kuniko Kimura, Kiyokazu Hashigoe, Mitsunori Oka
Software Mentions: 2
Published: over 7 years ago

10.1186/s13002-020-00367-3

Use of game fauna by Fulni-ô people in Northeastern Brazil: implications for conservation
Cited by: 4
Author(s): Josivan Soares da Silva, Aguinaldo José do Nascimento, Rômulo Romeu Nóbrega Alves, Ulysses Paulino Albuquerque
Software Mentions: 2
Published: over 6 years ago

10.1186/s13002-021-00458-9

On pickles: biological and sociocultural links between fermented foods and the human gut microbiome
Cited by: 5
Author(s): Andrew Flachs, Joseph D. Orkin
Software Mentions: 2
Published: about 5 years ago

10.1111/jeb.13735

Oceanic dispersal barriers in a holoplanktonic gastropod
Cited by: 12
Author(s): Le Qin Choo, Thijs M.P. Bal, Erica Goetze, Katja T. C. A. Peijnenburg
Software Mentions: 2
Published: almost 6 years ago

10.1111/jeb.13722

Compost spatial heterogeneity promotes evolutionary diversification of a bacterium
Cited by: 4
Author(s): Stineke van Houte, Daniel Padfield, Pedro Sánchez Gómez, Adela M. Luján, Michael A. Brockhurst, Steve Paterson, Angus Buckling
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1005384

Antibiotic and Antiinflammatory Therapy Transiently Reduces Inflammation and Hypercoagulation in Acutely SIV-Infected Pigtailed Macaques
Cited by: 37
Author(s): Ivona Pandrea, Cuiling Xu, Jennifer Stock, Daniel N. Frank, Dongzhu Ma, Benjamin B. Policicchio, Tianyu He, Jan Kristoff, Elaine Cornell, George S. Haret-Richter, Anita Trichel, Ruy M. Ribeiro, Russell P. Tracy, Cara C. Wilson, Alan Landay, Cristian Apetrei
Software Mentions: 2
Published: over 10 years ago

10.1007/s00442-020-04746-1

Functional diversity of habitat formers declines scale-dependently across an environmental stress gradient
Cited by: 12
Author(s): Laura Cappelatti, Alizée R. L. Mauffrey, John N. Griffin
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1009565

Mitigation of endemic GI-tract pathogen-mediated inflammation through development of multimodal treatment regimen and its impact on SIV acquisition in rhesus macaques
Cited by: 9
Author(s): Rachele M. Bochart, Kathleen Busman‐Sahay, Stephen Bondoc, David W. Morrow, Alexandra M. Ortiz, Christine M. Fennessey, Miranda Fischer, Oriene Shiel, Tonya Swanson, Christine Shriver-Munsch, Hugh Crank, Kimberly Armantrout, Aaron M Barber-Axthelm, Charlotte A. Langner, Cassandra Rae Moats, Caralyn Labriola, Rhonda MacAllister, Michael K. Axthelm, Jason M. Brenchley, Brandon F. Keele, Jacob D. Estes, Scott G. Hansen, Jeremy Smedley
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.8701

Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya
Cited by: 33
Author(s): Joseph Gichuhi, Sevgan Subramanian, Fathiya M. Khamis, J. van den Berg, Hannalene du Plessis, Sunday Ekesi, Jeremy K. Herren
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.9927

Connectivity of bacterial assemblages along the Loa River in the Atacama Desert, Chile
Cited by: 7
Author(s): Ana Zárate, Cristina Dorador, Rubén Araya, Mariela Guajardo, July Z. Florez, Gonzalo Icaza, Diego Cornejo, Jorge Valdés
Software Mentions: 2
Published: almost 6 years ago

10.1098/rspb.2021.0354

Negative resistance and resilience: biotic mechanisms underpin delayed biological recovery in stream restoration
Cited by: 9
Author(s): Isabelle C. Barrett, Angus R. McIntosh, Catherine M. Febria, Helen J. Warburton
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.4898

Do latitudinal gradients exist in New Zealand stream invertebrate metacommunities?
Cited by: 8
Author(s): Jonathan D. Tonkin, Russell G. Death, Timo Muotka, Anna Astorga, David A. Lytle
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.7040

Composition and dynamics of the bacterial communities present in the post-slaughter environment of farmed Atlantic salmon (Salmo salarL.) and correlations to gelatin degrading activity
Cited by: 2
Author(s): Ása Jacobsen, Svein‐Ole Mikalsen, Hóraldur Joensen, Jonhard Eysturskarð
Software Mentions: 2
Published: about 7 years ago

10.1007/s13238-020-00774-y

Is oral microbiome of children able to maintain resistance and functional stability in response to short-term interference of ingesta?
Cited by: 6
Author(s): Fangqiao Wei, Xiangyu Sun, Yufeng Gao, Haoyu Dou, Liu Yang, Lili Song, H. Luo, Ce Zhu, Qian Zhang, Peiyuan Tong, Wen Ren, Zhe Xun, Ruochun Guo, Yuanlin Guan, Shenghui Li, Yongwen Qi, Junjie Qin, Feng Chen, Shu Guo Zheng
Software Mentions: 2
Published: about 6 years ago

10.1002/prca.201900058

Dysbiosis of the Oral Ecosystem in Severe Congenital Neutropenia Patients
Cited by: 5
Author(s): Egija Zaura, Bernd W. Brandt, Mark J. Buijs, Gülnur Emingil, Merve Ergüz, Deniz Yılmaz Karapınar, Burç Pekpinarli, Kai Bao, Georgios N. Belibasakis, Nagihan Bostancı
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.2538

Deer herbivory reduces web-building spider abundance by simplifying forest vegetation structure
Cited by: 17
Author(s): Elizabeth J Roberson, Michael J. Chips, Walter P. Carson, Thomas P. Rooney
Software Mentions: 2
Published: almost 10 years ago

10.1098/rsos.150409

Integrating molecular, phenotypic and environmental data to elucidate patterns of crocodile hybridization in Belize
Cited by: 21
Author(s): Evon R. Hekkala, Steven G. Platt, John B. Thorbjarnarson, Thomas R. Rainwater, Michael Tessler, Seth W. Cunningham, Christopher P. Twomey, George Amato
Software Mentions: 2
Published: almost 11 years ago

10.1098/rsos.160672

Earliest filter-feeding pterosaur from the Jurassic of China and ecological evolution of Pterodactyloidea
Cited by: 29
Author(s): Chaowei Zhou, Ke‐Qin Gao, Haiyang Yi, Jinzhuang Xue, Quanguo Li, Richard C. Fox
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.11576

Dumpster diving for diatom plastid 16S rRNA genes
Cited by: 2
Author(s): Krista L Bonfantine, Stacey M. Trevathan‐Tackett, Ty G. Matthews, Ana Neckovic, Han Ming Gan
Software Mentions: 2
Published: about 5 years ago

10.1098/rsos.160829

Cutting through the smoke: the diversity of microorganisms in deep-sea hydrothermal plumes
Cited by: 16
Author(s): Anni Djurhuus, Svein‐Ole Mikalsen, Helge-Ansgar Giebel, Alex D. Rogers
Software Mentions: 2
Published: over 9 years ago

10.1098/rsos.170549

Macrofouling communities and the degradation of plastic bags in the sea: an in situ experiment
Cited by: 42
Author(s): Nora‐Charlotte Pauli, Jana S. Petermann, Christian Lott, Miriam Weber
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.1434

Dynamics in benthic community composition and influencing factors in an upwelling-exposed coral reef on the Pacific coast of Costa Rica
Cited by: 11
Author(s): Ines Stuhldreier, Celeste Sánchez-Noguera, Florian Roth, Carlos Jiménez, Tim Rixen, Jorge Cortés, Christian Wild
Software Mentions: 2
Published: almost 11 years ago

10.1098/rsos.180382

Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds
Cited by: 6
Author(s): Megan S. Thoemmes, Fiona Stewart, R. Adriana Hernández‐Aguilar, Matthew A. Bertone, David A. Baltzegar, Russell J. Borski, Naomi Cohen, Kaitlin P. Coyle, A. Piel, Robert R. Dunn
Software Mentions: 2
Published: over 8 years ago

10.1098/rsos.171700

The multiple roles of β-diversity help untangle community assembly processes affecting recovery of temperate rocky shores
Cited by: 7
Author(s): Mariachiara Chiantore, Simon F. Thrush, Valentina Asnaghi, Judi E. Hewitt
Software Mentions: 2
Published: about 8 years ago

10.1098/rsos.181068

Host species, pathogens and disease associated with divergent nasal microbial communities in tortoises
Cited by: 10
Author(s): Chava L. Weitzman, Franziska C. Sandmeier, C. Richard Tracy
Software Mentions: 2
Published: almost 8 years ago

10.1098/rsos.181693

Consortia of anti-nematode fungi and bacteria in the rhizosphere of soybean plants attacked by root-knot nematodes
Cited by: 18
Author(s): Hirokazu Toju, Yu Tanaka
Software Mentions: 2
Published: over 7 years ago

10.1098/rsos.181730

Plastic multicellular development of Myxococcus xanthus : genotype–environment interactions in a physical gradient
Cited by: 16
Author(s): Natsuko Rivera‐Yoshida, Alejandro V. Arzola, Juan A. Arias Del Angel, Alessio Franci, Michael Travisano, Ana E. Escalante, Mariana Benítez
Software Mentions: 2
Published: over 7 years ago

10.1098/rsos.181800

Stable isotopes reveal winter feeding in different habitats in blue, fin and sei whales migrating through the Azores
Cited by: 24
Author(s): Mónica Silva, Asunción Borrell, Rui Prieto, Pauline Gauffier, Martine Bérubé, Per J. Palsbøl, Ana Colaço
Software Mentions: 2
Published: about 7 years ago

10.1098/rsos.191808

Commodity-specific punishment for experimentally induced defection in cooperatively breeding fish
Cited by: 16
Author(s): Jan Naef, Michael Taborsky
Software Mentions: 2
Published: over 6 years ago

10.1007/s00442-021-04865-3

Plant species- and stage-specific differences in microbial decay of mangrove leaf litter: the older the better?
Cited by: 18
Author(s): Novia Arinda Pradisty, Ahmad Aldrie Amir, Martin Zimmer
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.192200

An individualized mosaic of maternal microbial strains is transmitted to the infant gut microbial community
Cited by: 14
Author(s): Hyunmin Koo, Braden C. McFarland, Joseph A. Hakim, David K. Crossman, Michael R. Crowley, Jorge Martín Rodríguez, Etty N. Benveniste, Casey D. Morrow
Software Mentions: 2
Published: over 6 years ago

10.1186/s12931-018-0736-9

Impaired diversity of the lung microbiome predicts progression of idiopathic pulmonary fibrosis
Cited by: 44
Author(s): Youhei Takahashi, Atsushi Saito, Hirofumi Chiba, Koji Kuronuma, Kimiyuki Ikeda, Tomofumi Kobayashi, Shigeru Ariki, Motoko Takahashi, Yasushi Sasaki, Hiroki Takahashi
Software Mentions: 2
Published: over 8 years ago

10.1186/s12931-019-1218-4

Metagenomic identification of severe pneumonia pathogens in mechanically-ventilated patients: a feasibility and clinical validity study
Cited by: 59
Author(s): Liheng Yang, Ghady Haidar, Hassaan Zia, Rachel Nettles, Shulin Qin, Xiaohong Wang, Faraaz Shah, Sarah F. Rapport, Themoula Charalampous, Barbara A. Methé, Adam Fitch, Alison Morris, Bryan J. McVerry, Justin O’Grady, Georgios D. Kitsios
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12931-020-01340-0

Microbial burden and viral exacerbations in a longitudinal multicenter COPD cohort
Cited by: 42
Author(s): Jérôme Bouquet, David E. Tabor, Jonathan S. Silver, Varsha Nair, Andrey Tovchigrechko, M. L. Griffin, Mark T. Esser, Bret R. Sellman, Hong Jin
Software Mentions: 2
Published: over 6 years ago

10.1016/j.rhisph.2016.06.002

Proliferation of the biocontrol agent Fusarium oxysporum f. sp. strigae and its impact on indigenous rhizosphere fungal communities in maize under different agro-ecologies
Cited by: 12
Author(s): Judith Zimmermann, Mary K. Musyoki, Georg Cadisch, Frank Rasche
Software Mentions: 2
Published: about 10 years ago

10.1002/jia2.25628

Efficacy of silk fibroin biomaterial vehicle for in vivo mucosal delivery of Griffithsin and protection against HIV and SHIV infection ex vivo
Cited by: 13
Author(s): Katti R. Crakes, Carolina Herrera, John D. Morgan, Katie J. Olstad, Ann J. Hessell, Paul Ziprin, Patricia J. LiWang, Satya Dandekar
Software Mentions: 2
Published: almost 6 years ago

10.1126/sciadv.aaz2015

Mapping of host-parasite-microbiome interactions reveals metabolic determinants of tropism and tolerance in Chagas disease
Cited by: 34
Author(s): Ekram Hossain, Shugufta Khanam, Danya A. Dean, Chao‐Yi Wu, Sharon Lostracco-Johnson, Diane Thomas, Shelley S. Kane, Adwaita R. Parab, Karina Flores, Mitchelle Katemauswa, Camil Gosmanov, Susana Hayes, Y. Zhang, D. Li, Christine Woelfel-Monsivais, Krithivasan Sankaranarayanan, Laura-Isobel McCall
Software Mentions: 2
Published: about 6 years ago

10.1038/s41597-019-0077-7

Longitudinal 16S rRNA data derived from limb regenerative tissue samples of axolotl Ambystoma mexicanum
Cited by: 10
Author(s): Turan Demircan, Ayşe Elif İlhan, Guvanch Ovezmyradov, Gürkan Öztürk, Süleyman Yıldırım
Software Mentions: 2
Published: over 7 years ago

10.1038/s41597-020-00663-3

StableClim, continuous projections of climate stability from 21000 BP to 2100 CE at multiple spatial scales
Cited by: 10
Author(s): Stuart C. Brown, T. M. L. Wigley, Bette L. Otto‐Bliesner, Damien A. Fordham
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep09316

Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem
Cited by: 39
Author(s): Jinbo Xiong, Zhili He, Shaojun Shi, Angela D. Kent, Ye Deng, Liyou Wu, Joy D. Van Nostrand, Jizhong Zhou
Software Mentions: 2
Published: over 11 years ago

10.1038/srep12263

Water regime history drives responses of soil Namib Desert microbial communities to wetting events
Cited by: 48
Author(s): Aline Frossard, Jean‐Baptiste Ramond, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-018-30295-y

A controlled aquarium system and approach to study the role of sponge-bacteria interactions using Aplysilla rosea and Vibrio natriegens
Cited by: 2
Author(s): Mohammad F. Mehbub, Jason E. Tanner, Stephen J. Barnett, J. F. Bekker, Christopher M. M. Franco, Wei Zhang
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-29054-w

The urinary microbiome associated with bladder cancer
Cited by: 146
Author(s): Viljemka Bučević‐Popović, Marijan Šitum, Cheryl-Emiliane T. Chow, Luisa Chan, Blanka Roje, Janoš Terzić
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-30709-x

Snake fungal disease alters skin bacterial and fungal diversity in an endangered rattlesnake
Cited by: 33
Author(s): Matthew C. Allender, Sarah J. Baker, M. P. Britton, Angela D. Kent
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-30150-0

Root exudate metabolomes change under drought and show limited capacity for recovery
Cited by: 190
Author(s): Albert Gargallo‐Garriga, Catherine Preece, Jordi Sardans, Michal Oravec, Otmar Urban, Josep Peñuelas
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-30689-y

A detailed investigation of the porcine skin and nose microbiome using universal and Staphylococcus specific primers
Cited by: 36
Author(s): Mikael Lenz Strube, Julie Elvekjær Hansen, Sophia Rasmussen, Karl Pedersen
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-31398-2

Changes in benthic community structure and sediment characteristics after natural recolonisation of the seagrass Zostera muelleri
Cited by: 14
Author(s): Carolyn J. Lundquist, Tracey C. Jones, Samantha Maree Parkes, R.H. Bulmer
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-31731-9

Habitat environments impacted the gut microbiome of long-distance migratory swan geese but central species conserved
Cited by: 51
Author(s): Yueni Wu, Yefeng Yang, Lei Cao, Huaqun Yin, Meiying Xu, Zhujun Wang, Yangying Liu, Xin Wang, Ye Deng
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-32583-z

Nod2 Deficiency in mice is Associated with Microbiota Variation Favouring the Expansion of mucosal CD4+ LAP+ Regulatory Cells
Cited by: 23
Author(s): Alessia Butera, Monica Di Paola, Lorenzo Pavarini, Francesco Strati, Massimo Pindo, Massimo Sanchez, Duccio Cavalieri, Monica Boirivant, Carlotta De Filippo
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.4060

Evaluating the role of wild songbirds or rodents in spreading avian influenza virus across an agricultural landscape
Cited by: 5
Author(s): Derek D. Houston, Shahan Azeem, Coady W. Lundy, Yuko Sato, Baoqing Guo, Julie A. Blanchong, Phillip C. Gauger, David R. Marks, Kyoung‐Jin Yoon, James S. Adelman
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-33813-0

Increased transferrin saturation is associated with subgingival microbiota dysbiosis and severe periodontitis in genetic haemochromatosis
Cited by: 17
Author(s): Émile Boyer, Sandrine Le Gall‐David, Bénédicte Martin, Shao Bing Fong, Olivier Loréal, Yves Deugnier, Martine Bonnaure‐Mallet, Vincent Meuric
Software Mentions: 2
Published: almost 8 years ago

10.3390/molecules25143200

Herbivory and Attenuated UV Radiation Affect Volatile Emissions of the Invasive Weed Calluna vulgaris
Cited by: 8
Author(s): Evans Effah, D. Paul Barrett, Paul G. Peterson, Jason J. Wargent, Murray A. Potter, Jarmo K. Holopainen, Andrea Clavijo McCormick
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-34106-2

Bacterial and archaeal community structures in perennial cave ice
Cited by: 27
Author(s): Corina Ițcuș, Madalina D. Pascu, Paris Lavín, Aurel Perşoiu, Lavinia Iancu, Cristina Purcarea
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-34088-1

Mapping anaerobic sludge bed community adaptations to manure supernatant in biogas reactors
Cited by: 2
Author(s): Anna Synnøve Røstad Nordgård, Wenche Hennie Bergland, Rune Bakke, Kjetill Østgaard, Ingrid Bakke
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.10080

Spatial benthic community analysis of shallow coral reefs to support coastal management in Culebra Island, Puerto Rico
Cited by: 3
Author(s): Nicolás X. Gómez-Andújar, Edwin A. Hernández-Delgado
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-34697-w

Microbiome shifts with onset and progression of Sea Star Wasting Disease revealed through time course sampling
Cited by: 30
Author(s): Melanie M. Lloyd, Melissa H. Pespeni
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.8903

Palustrine forested wetland vegetation communities change across an elevation gradient, Washington State, USA
Cited by: 2
Author(s): Nate Hough‐Snee
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-37298-9

Close social relationships correlate with human gut microbiota composition
Cited by: 123
Author(s): Kimberly A. Dill‐McFarland, Zheng-Zheng Tang, Julia H. Kemis, Robert L. Kerby, Guanhua Chen, Alberto Palloni, Thomas J. Sorenson, Federico E. Rey, Pamela Herd
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-37042-3

Dynamics of the gut microbiota in developmental stages of Litopenaeus vannamei reveal its association with body weight
Cited by: 61
Author(s): Fan Jia, Limei Chen, Guoqin Mai, Haoran Zhang, Jian Yang, Deng Deng, Yingfei Ma
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-38177-z

High metabolic variation for seaweeds in response to environmental changes: a case study of the brown algae Lobophora in coral reefs
Cited by: 23
Author(s): Julie Gaubert, Claude Payri, Christophe Vieira, Hiren Solanki, Olivier P. Thomas
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-39149-7

Haemolymph microbiome of the cultured spiny lobster Panulirus ornatus at different temperatures
Cited by: 17
Author(s): Mei C. Ooi, Evan F. Goulden, Gregory G. Smith, Andrew R. Bridle
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-38344-2

Leaf-associated microbiomes of grafted tomato plants
Cited by: 41
Author(s): Hirokazu Toju, Koji Okayasu, Michitaka Notaguchi
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-38873-4

DirtyGenes: testing for significant changes in gene or bacterial population compositions from a small number of samples
Cited by: 8
Author(s): Laurence Shaw, Adam Blanchard, Qinglin Chen, Xin‐Li An, Peter N. Davies, Sabine Tötemeyer, Yong‐Guan Zhu, Dov J. Stekel
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.7588

Long-term studies reveal major environmental factors driving zooplankton dynamics and periodicities in the Black Sea coastal zooplankton
Cited by: 2
Author(s): Alexander L. Vereshchaka, L. L. Anokhina, T. A. Lukasheva, Anastasia A. Lunina
Software Mentions: 2
Published: almost 7 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292