Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.3389/fmicb.2019.02832
Changes in Microbiota Across Developmental Stages of Aedes koreicus, an Invasive Mosquito Vector in Europe: Indications for Microbiota-Based Control Strategies
Cited by: 30
Author(s): Niccolò Alfano, Valentina Tagliapietra, Fausta Rosso, Mattia Manica, Daniele Arnoldi, Massimo Pindo, Annapaola Rizzoli
Software Mentions: 2
Published: almost 5 years ago
10.3389/fmicb.2017.00608
Inbred Mouse Populations Exhibit Intergenerational Changes in Intestinal Microbiota Composition and Function Following Introduction to a Facility
Cited by: 16
Author(s): Jocelyn M. Choo, Paul J. Trim, Lex E. X. Leong, Guy C. J. Abell, Carly Brune, Nicole Jeffries, Steven Wesselingh, T. Neil Dear, Marten F. Snel, Geraint B. Rogers
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2018.02374
Root Microbiota in Primary and Secondary Apical Periodontitis
Cited by: 70
Author(s): Serge Bouillaguet, Daniel Manoil, Myriam Girard, Justine Louis, Nadia Gaïa, Stefano Leo, Jacques Schrenzel, Vladimir Lazarević
Software Mentions: 2
Published: about 6 years ago
10.3389/fmicb.2021.669131
Bacterial Community Spacing Is Mainly Shaped by Unique Species in the Subalpine Natural Lakes of China
Cited by: 3
Author(s): Jinxian Liu, Jiahe Su, Meiting Zhang, Luo Zhengming, Xiaoqi Li, Bo Chai
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2019.01583
Highly Diverse Aquatic Microbial Communities Separated by Permafrost in Greenland Show Distinct Features According to Environmental Niches
Cited by: 10
Author(s): Malin Bomberg, Lillemor Claesson Liljedahl, Tiina Lamminmäki, Anne Kontula
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2021.708990
Parasitoid Causes Cascading Effects on Plant-Induced Defenses Mediated Through the Gut Bacteria of Host Caterpillars
Cited by: 4
Author(s): Jie Wang, Charles J. Mason, Xueyang Ju, Rongrong Xue, Lu Tong, Michelle Peiffer, Yuanyuan Song, Rensen Zeng, Gary W. Felton
Software Mentions: 2
Published: about 3 years ago
10.3389/fmicb.2016.01064
Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics
Cited by: 30
Author(s): John G. Warden, Giorgio Casaburi, Christopher R. Omelon, Philip C. Bennett, Daniel O. Breecker, Jamie S. Foster
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2017.02451
Diversity of Microbial Communities and Quantitative Chemodiversity in Layers of Marine Sediment Cores from a Causeway (Kaichu-Doro) in Okinawa Island, Japan
Cited by: 8
Author(s): Taha Soliman, James Davis Reimer, Sung‐Yin Yang, Alejandro Villar‐Briones, Michael C. Roy, Holger Jenke‐Kodama
Software Mentions: 2
Published: almost 7 years ago
10.3389/fmicb.2017.00752
Predicting the HMA-LMA Status in Marine Sponges by Machine Learning
Cited by: 130
Author(s): Lucas Moitinho‐Silva, Georg Steinert, Shaun Nielsen, Cristiane Cassiolato Pires Hardoim, Yangjun Wu, Grace P. McCormack, Susanna López‐Legentil, Román Marchant, Nicole S. Webster, Torsten Thomas, Ute Hentschel
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2021.664407
Bacterial and Fungal Gut Community Dynamics Over the First 5 Years of Life in Predominantly Rural Communities in Ghana
Cited by: 6
Author(s): Nelly Amenyogbe, Dennis Adu-Gyasi, Yeetey Enuameh, Kwaku Poku Asante, Dennis Gyasi Konadu, Seyram Kaali, David Dosoo, Pinaki Panigrahi, Tobias R. Kollmann, William W. Mohn, Seth Owusu‐Agyei
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2019.02184
13C-DNA-SIP Distinguishes the Prokaryotic Community That Metabolizes Soybean Residues Produced Under Different CO2 Concentrations
Cited by: 5
Author(s): Yanhong Wang, Zhenhua Yu, Yansheng Li, Guanghua Wang, Caixian Tang, Xiaobing Liu, Zhihuang Xie, Jian Jin
Software Mentions: 2
Published: about 5 years ago
10.3389/fmolb.2021.676138
Establishment of Novel Prostate Cancer Risk Subtypes and A Twelve-Gene Prognostic Model
Cited by: 1
Author(s): Enchong Zhang, Fujisawa Shiori, Mo Zhang, Peng Wang, Jieqian He, Yuntian Ge, Yi Song, Liping Shan
Software Mentions: 2
Published: over 3 years ago
10.3389/fmolb.2019.00151
Carbon Amendments Influence Composition and Functional Capacities of Indigenous Soil Microbiomes
Cited by: 4
Author(s): Jose Pablo Dundore‐Arias, Sarah C. Castle, Laura Felice, Ruth Dill‐Macky, Linda L. Kinkel
Software Mentions: 2
Published: almost 5 years ago
10.3389/fmolb.2020.610845
Systematic Comparisons for Composition Profiles, Taxonomic Levels, and Machine Learning Methods for Microbiome-Based Disease Prediction
Cited by: 9
Author(s): Kuncheng Song, Fred A. Wright, Yi‐Hui Zhou
Software Mentions: 2
Published: almost 4 years ago
10.3389/fneur.2020.01015
Evaluation of an Immunomodulatory Probiotic Intervention for Veterans With Co-occurring Mild Traumatic Brain Injury and Posttraumatic Stress Disorder: A Pilot Study
Cited by: 26
Author(s): Lisa A. Brenner, Jeri E. Forster, Kelly A. Stearns‐Yoder, Christopher E. Stamper, Andrew J. Hoisington, Diana P. Brostow, Meredith Mealer, Hal S. Wortzel, Teodor T. Postolache, Christopher A. Lowry
Software Mentions: 2
Published: about 4 years ago
10.3389/fneur.2020.00137
Gut Microbiota Altered in Mild Cognitive Impairment Compared With Normal Cognition in Sporadic Parkinson's Disease
Cited by: 95
Author(s): Tengzhu Ren, Yuyuan Gao, Yihui Qiu, Shuolin Jiang, Qingxi Zhang, Jiahui Zhang, Limin Wang, Yuhu Zhang, Limin Wang, Kun Nie
Software Mentions: 2
Published: almost 5 years ago
10.3389/fnins.2021.669410
High Fructose Corn Syrup-Moderate Fat Diet Potentiates Anxio-Depressive Behavior and Alters Ventral Striatal Neuronal Signaling
Cited by: 10
Author(s): Ayanabha Chakraborti, Christopher D. Graham, Sophie B. Chehade, Bijal Vashi, Alan Umfress, Pradeep Kurup, Benjamin Vickers, H. Alexander Chen, Rahul Telange, Taylor F. Berryhill, William Van Der Pol, Mickie L. Powell, Stephen Barnes, Casey D. Morrow, Daniel L. Smith, M. Shahid Mukhtar, Stephen A. Watts, Gregory D. Kennedy, James A. Bibb
Software Mentions: 2
Published: over 3 years ago
10.3389/fnut.2021.707763
In vitro Colon Fermentation of Soluble Arabinoxylan Is Modified Through Milling and Extrusion
Cited by: 9
Author(s): Teresa Demuth, Veronica Edwards, Lea Bircher, Christophe Lacroix, Laura Nyström, Annelies Geirnaert
Software Mentions: 2
Published: over 3 years ago
10.3389/fvets.2020.00115
Effects of Tilmicosin Treatment on the Nasopharyngeal Microbiota of Feedlot Cattle With Respiratory Disease During the First Week of Clinical Recovery
Cited by: 7
Author(s): Mohamed Zeineldin, James Lowe, Brian Aldridge
Software Mentions: 2
Published: almost 5 years ago
10.3389/fvets.2019.00354
Respiratory Dysbiosis in Canine Bacterial Pneumonia: Standard Culture vs. Microbiome Sequencing
Cited by: 14
Author(s): Aida I. Vientós‐Plotts, Aaron C. Ericsson, Hansjörg Rindt, Carol R. Reinero
Software Mentions: 2
Published: about 5 years ago
10.3389/fvets.2019.00371
The Effect of Milk Replacer Composition on the Intestinal Microbiota of Pre-ruminant Dairy Calves
Cited by: 14
Author(s): James Badman, Kristian Daly, Jennifer Kelly, Andrew W. Moran, John Cameron, Ian Watson, J.R. Newbold, Soraya P. Shirazi-Beechey
Software Mentions: 2
Published: about 5 years ago
10.3389/fvets.2020.00489
In ovo Administration of Defined Lactic Acid Bacteria Previously Isolated From Adult Hens Induced Variations in the Cecae Microbiota Structure and Enterobacteriaceae Colonization on a Virulent Escherichia coli Horizontal Infection Model in Broiler Chickens
Cited by: 4
Author(s): Margarita A. Arreguin-Nava, Brittany D. Graham, Bishnu Adhikari, Melissa Agnello, C.M. Selby, Xóchitl Hernández-Velasco, Christine N. Vuong, Bruno Solís-Cruz, Daniel Hernández-Patlán, Juan D. Latorre, G. Téllez, Billy M. Hargis
Software Mentions: 2
Published: over 4 years ago
10.1186/s12983-017-0221-1
Patterns and dynamics of neutral lipid fatty acids in ants – implications for ecological studies
Cited by: 13
Author(s): Félix Baumgarten Rosumek, Adrian Brückner, Nico Blüthgen, Florian Menzel, Michael Heethoff
Software Mentions: 2
Published: over 7 years ago
10.1186/s12983-020-00353-1
Ultrasonic vocalizations in house mice depend upon genetic relatedness of mating partners and correlate with subsequent reproductive success
Cited by: 19
Author(s): Doris Nicolakis, Maria Adelaide Marconi, Sarah M. Zala, Dustin J. Penn
Software Mentions: 2
Published: over 4 years ago
10.1186/s12983-018-0249-x
Chemical and behavioral integration of army ant-associated rove beetles – a comparison between specialists and generalists
Cited by: 32
Author(s): Christoph von Beeren, Adrian Brückner, Munetoshi Maruyama, Griffin Burke, Jana Wieschollek, Daniel J. C. Kronauer
Software Mentions: 2
Published: over 6 years ago
10.1186/s12983-021-00434-9
Feasting, not fasting: winter diets of cave hibernating bats in the United States
Cited by: 11
Author(s): Riley F. Bernard, Emma V. Willcox, Reilly Jackson, Veronica A. Brown, Gary F. McCracken
Software Mentions: 2
Published: about 3 years ago
10.1080/21645698.2021.1893624
Compositional equivalence assessment of insect-resistant genetically modified rice using multiple statistical analyses
Cited by: 6
Author(s): Seon‐Woo Oh, Eunha Kim, So‐Young Lee, Da‐Young Baek, Sang-Gu Lee, Hanqing Kang, Youngjin Chung, Soon-Ki Park, Tae-Hun Ryu
Software Mentions: 2
Published: almost 4 years ago
10.3390/genes8120380
The Alteration of Nasopharyngeal and Oropharyngeal Microbiota in Children with MPP and Non-MPP
Cited by: 10
Author(s): Zhiwei Lü, Wenkui Dai, Yanhong Liu, Qian Zhou, Heping Wang, Dongfang Li, Zhenyu Yang, Yinhu Li, Guoli Xie, Shuai Cheng Li, Yuejie Zheng
Software Mentions: 2
Published: almost 7 years ago
10.3390/genes9090433
Specific LTR-Retrotransposons Show Copy Number Variations between Wild and Cultivated Sunflowers
Cited by: 16
Author(s): Flavia Mascagni, Alberto Vangelisti, Tommaso Giordani, Andrea Cavallini, Lucia Natali
Software Mentions: 2
Published: over 6 years ago
10.3390/genes12020309
The Postmedieval Latvian Oral Microbiome in the Context of Modern Dental Calculus and Modern Dental Plaque Microbial Profiles
Cited by: 8
Author(s): Alisa Kazarina, Elīna Pētersone-Gordina, Jānis Ķimsis, Jevgenija Kuzmicka, Pawel Zayakin, Žans Griškjans, Guntis Gerhards, Renāte Ranka
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13059-016-1086-x
Tiny microbes, enormous impacts: what matters in gut microbiome studies?
Cited by: 112
Author(s): Justine W. Debelius, Se Jin Song, Yoshiki Vázquez-Baeza, Zhenjiang Xu, Antonio González, Rob Knight
Software Mentions: 2
Published: about 8 years ago
10.1186/s13059-018-1501-6
Interaction between the microbiome and TP53 in human lung cancer
Cited by: 222
Author(s): K. Leigh Greathouse, James R. White, Ashley J. Vargas, Valery Bliskovsky, Jessica Beck, Natalia von Muhlinen, Eric C. Polley, Elise D. Bowman, Mohammed A. Khan, Ana I. Robles, Tomer Cooks, Bríd M. Ryan, R. Noah Padgett, Amiran Dzutsev, Giorgio Trinchieri, Marbin Pineda, Sven Bilke, Paul S. Meltzer, Alexis N. Hokenstad, Tricia M. Stickrod, Marina Walther-Antonio, Joshua P. Earl, Joshua Chang Mell, Jarosław Król, Sergey Balashov, Archana Bhat, Garth D. Ehrlich, Alex M. Valm, Clay Deming, Sean Conlan, Julia Oh, Julie Segre, Curtis C. Harris
Software Mentions: 2
Published: over 6 years ago
10.1186/s13059-019-1789-x
Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease
Cited by: 36
Author(s): Nicholas S Rhoades, Tasha Barr, Sara M Hendrickson, Kamm Prongay, Andrew J Haertel, Leanne Gill, Laura Garzel, Katrine Whiteson, Mark K. Slifka, Ilhem Messaoudi
Software Mentions: 2
Published: over 5 years ago
10.1186/s13059-020-1933-7
Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads
Cited by: 13
Author(s): Sumaiya Nazeen, Yun William Yu, Bonnie Berger
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13059-020-01999-0
The preceding root system drives the composition and function of the rhizosphere microbiome
Cited by: 42
Author(s): Yi Zhou, David Coventry, Vadakattu V. S. R. Gupta, David Fuentes, Andrew Merchant, Brent N. Kaiser, Jishun Li, Yanli Wei, Huan Liu, Yayu Wang, Shuheng Gan, Matthew D. Denton
Software Mentions: 2
Published: over 4 years ago
10.1186/s13073-014-0099-x
The conjunctival microbiome in health and trachomatous disease: a case control study
Cited by: 132
Author(s): Yanjiao Zhou, Martin J. Holland, Pateh Makalo, Hassan Joof, Chrissy h. Roberts, David Mabey, Robin L. Bailey, Matthew J. Burton, George M. Weinstock, Sarah E. Burr
Software Mentions: 2
Published: about 10 years ago
10.1186/s13073-016-0301-4
Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection
Cited by: 125
Author(s): Emmanuel Montassier, Gabriel A. Al‐Ghalith, Tonya Ward, Stéphane Corvec, Thomas Gastinne, G. Potel, Philippe Moreau, Éric Batard, Dan Knights
Software Mentions: 2
Published: over 8 years ago
10.1186/s13073-016-0312-1
Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota
Cited by: 238
Author(s): Albert Pallejà, Alireza Kashani, Kristine H. Allin, Trine Nielsen, Chenchen Zhang, Yin Li, Thorsten Brach, Suisha Liang, Feng Qian, Nils B. Jørgensen, Kirstine N. Bojsen‐Møller, Carsten Dirksen, Kristoffer Sølvsten Burgdorf, Jens J. Holst, Sten Madsbad, J. Wang, Oluf Pedersen, Torben Hansen, Manimozhiyan Arumugam
Software Mentions: 2
Published: over 8 years ago
10.1186/s13073-016-0330-z
The early infant gut microbiome varies in association with a maternal high-fat diet
Cited by: 256
Author(s): Derrick M. Chu, Kathleen M. Antony, Jun Ma, Amanda Prince, Lori Showalter, Michelle Moller, Kjersti M. Aagaard
Software Mentions: 2
Published: over 8 years ago
10.1186/s13073-021-00921-y
Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men
Cited by: 47
Author(s): Wenjie Ma, Long H. Nguyen, Mingyang Song, Dong D. Wang, Eric A. Franzosa, Yin Cao, Amit D. Joshi, David A. Drew, Raaj S. Mehta, Kerry L. Ivey, Lisa L. Strate, Edward Giovannucci, Jacques Izard, Wendy S. Garrett, Eric B. Rimm, Curtis Huttenhower, Andrew T. Chan
Software Mentions: 2
Published: over 3 years ago
10.1186/s13073-021-00957-0
Gut microbial determinants of clinically important improvement in patients with rheumatoid arthritis
Cited by: 36
Author(s): Vinod Kumar Gupta, Kevin Y. Cunningham, Benjamin Hur, Utpal Bakshi, Harvey Huang, Kenneth J. Warrington, Veena Taneja, Elena Myasoedova, John M. Davis, Jaeyun Sung
Software Mentions: 2
Published: about 3 years ago
10.1186/s12932-015-0022-4
Rare earth element geochemistry of outcrop and core samples from the Marcellus Shale
Cited by: 22
Author(s): Clinton W. Noack, Jinesh C. Jain, John Stegmeier, J. Alexandra Hakala, Athanasios K. Karamalidis
Software Mentions: 2
Published: over 9 years ago
10.1093/gigascience/gix036
Lipidomic profiling reveals distinct differences in plasma lipid composition in healthy, prediabetic, and type 2 diabetic individuals
Cited by: 34
Author(s): Zhong Huang, Chao Fang, Yanqun Fan, Yan Liu, Bo Wen, Huahui Ren, Guixue Hou, Fangming Yang, Hailiang Xie, Zhuye Jie, Ye Peng, Zhiqiang Ye, Jiegen Wu, Jian Zi, Guoqing Zhao, Jiayu Chen, Xiao Bao, Yihe Hu, Yan Gao, Jun Zhang, Huanming Yang, Jian Wang, Lise Madsen, Karsten Kristiansen, Chuanming Ni, Junhua Li, Siqi Liu
Software Mentions: 2
Published: over 7 years ago
10.1111/gcb.14964
Identifying potentially invasive non‐native marine and brackish water species for the Arabian Gulf and Sea of Oman
Cited by: 26
Author(s): Stacey Clarke, Lorenzo Vilizzi, Laura Lee, Louisa E. Wood, Winston J. Cowie, John A. Burt, Rusyan Jill Mamiit, Hassina Ali, Phil I. Davison, Gemma V. Fenwick, Rogan Harmer, Michał Skóra, Sebastian Kozic, Luke Aislabie, Adam Kennerley, Will J.F. Le Quesne, Gordon H. Copp, Paul Stebbing
Software Mentions: 2
Published: almost 5 years ago
10.1080/19490976.2020.1857513
Maternal consumption of artificially sweetened beverages during pregnancy is associated with infant gut microbiota and metabolic modifications and increased infant body mass index
Cited by: 30
Author(s): Isabelle Laforest‐Lapointe, Allan B. Becker, Piushkumar J. Mandhane, Stuart E. Turvey, Theo J. Moraes, Malcolm R. Sears, Padmaja Subbarao, Laura K. Sycuro, Meghan B. Azad, Marie‐Claire Arrieta
Software Mentions: 2
Published: almost 4 years ago
10.1038/srep11124
Manipulating the banana rhizosphere microbiome for biological control of Panama disease
Cited by: 118
Author(s): Cong Xue, C. Ryan Penton, Zongzhuan Shen, Ruifu Zhang, Qiwei Huang, Rong Li, Yunze Ruan, Qirong Shen
Software Mentions: 2
Published: over 9 years ago
10.1038/srep13338
Effect of ethnicity and socioeconomic variation to the gut microbiota composition among pre-adolescent in Malaysia
Cited by: 55
Author(s): Chun Wie Chong, A. Ahmad, Yvonne Ai Lian Lim, Cindy Shuan Ju Teh, Ivan Kok Seng Yap, Soo Ching Lee, Yuee Teng Chin, P’ng Loke, Kek Heng Chua
Software Mentions: 2
Published: over 9 years ago
10.1038/srep14862
Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation
Cited by: 141
Author(s): Claudia Barelli, Davide Albanese, Claudio Donati, Massimo Pindo, Chiara Dallago, Francesco Rovero, Duccio Cavalieri, Kieran Tuohy, Heidi C. Hauffe, Carlotta De Filippo
Software Mentions: 2
Published: about 9 years ago
10.1038/srep18206
The impact of rearing environment on the development of gut microbiota in tilapia larvae
Cited by: 194
Author(s): Christos Giatsis, Detmer Sipkema, Hauke Smidt, Hans G.H.J. Heilig, Giulia Benvenuti, J.A.J. Verreth, Marc Verdegem
Software Mentions: 2
Published: almost 9 years ago
10.1038/srep18787
The nature of Ordovician limestone-marl alternations in the Oslo-Asker District (Norway): witnesses of primary glacio-eustasy or diagenetic rhythms?
Cited by: 23
Author(s): Chloé E. A. Amberg, Tim Collart, Wout Salenbien, Lisa M. Egger, Axel Munnecke, Arne Thorshøj Nielsen, Claude Monnet, Øyvind Hammer, Thijs R.A. Vandenbroucke
Software Mentions: 2
Published: almost 9 years ago
10.1038/srep23027
Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status
Cited by: 56
Author(s): Angela B. Javurek, William G. Spollen, Amber M. Mann Ali, Sarah A. Johnson, Dennis B. Lubahn, Nathan J. Bivens, Karen Bromert, Mark R. Ellersieck, Scott A. Givan, Cheryl S. Rosenfeld
Software Mentions: 2
Published: over 8 years ago
10.1038/srep25945
Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study
Cited by: 173
Author(s): Christian Milani, Andrea Ticinesi, J. Gerritsen, Antonio Nouvenne, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Sabrina Duranti, Marta Mangifesta, Alice Viappiani, Chiara Ferrario, Marcello Maggio, Fulvio Lauretani, Willem M. de Vos, Douwe van Sinderen, Tiziana Meschi, Marco Ventura
Software Mentions: 2
Published: over 8 years ago
10.1038/srep26513
Elevational sensitivity in an Asian ‘hotspot’: moth diversity across elevational gradients in tropical, sub-tropical and sub-alpine China
Cited by: 8
Author(s): Louise A. Ashton, Akihiro Nakamura, Chris J. Burwell, Yong Tang, Min Cao, T. Whitaker, Zhenhua Sun, Han Huang, R. L. Kitching
Software Mentions: 2
Published: over 8 years ago
10.1038/srep28904
Dynamics of dental evolution in ornithopod dinosaurs
Cited by: 17
Author(s): Edward Strickson, Albert Prieto‐Márquez, Michael J. Benton, Thomas L. Stubbs
Software Mentions: 2
Published: over 8 years ago
10.1038/srep30930
Extremely heat tolerant photo-symbiosis in a shallow marine benthic foraminifera
Cited by: 32
Author(s): Christiane Schmidt, Danna Titelboim, J. Brandt, Barak Herut, Sigal Abramovich, Ahuva Almogi‐Labin, Michal Kučera
Software Mentions: 2
Published: over 8 years ago
10.1038/srep31519
Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data
Cited by: 56
Author(s): Ran Blekhman, Karen Tang, Elizabeth A. Archie, Luis B. Barreiro, Zachary P. Johnson, Mark Wilson, Jaden R. Kohn, Michael L. Yuan, Laurence R. Gesquiere, Laura Grieneisen, Jenny Tung
Software Mentions: 2
Published: over 8 years ago
10.1038/srep30607
Climate extremes can drive biological assemblages to early successional stages compared to several mild disturbances
Cited by: 19
Author(s): Carlos Sanz‐Lázaro
Software Mentions: 2
Published: over 8 years ago
10.1038/srep31447
Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea
Cited by: 21
Author(s): Hanna Schade, Lisa Mevenkamp, Katja Guilini, Stefanie Meyer, Stanislav N. Gorb, Doris Abele, Alexandra Vanreusel, Frank Melzner
Software Mentions: 2
Published: over 8 years ago
10.1038/srep32411
Bacterial community structure and function shift across a northern boreal forest fire chronosequence
Cited by: 33
Author(s): Hui Sun, Minna Santalahti, Jukka Pumpanen, Egle Köster, Frank Berninger, Tommaso Raffaello, Fred O. Asiegbu, Jussi Heinonsalo
Software Mentions: 2
Published: over 8 years ago
10.1038/srep35882
The human laryngeal microbiome: effects of cigarette smoke and reflux
Cited by: 34
Author(s): Marie E. Jetté, Kimberly A. Dill‐McFarland, Alissa S. Hanshew, Garret Suen, Susan L. Thibeault
Software Mentions: 2
Published: about 8 years ago
10.1038/srep36271
Coral symbioses under prolonged environmental change: living near tolerance range limits
Cited by: 39
Author(s): Eugenia M. Sampayo, Tyrone Ridgway, Lorenzo Franceschinis, George Roff, Ove Høegh-Guldberg, Sophie Dove
Software Mentions: 2
Published: about 8 years ago
10.1038/srep36260
27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore
Cited by: 101
Author(s): James R. Guest, Karenne Tun, Jeffrey Low, Adriana Vergés, Ezequiel M. Marzinelli, Alexandra H. Campbell, Andrew G. Bauman, David A. Feary, Loke Ming Chou, Peter D. Steinberg
Software Mentions: 2
Published: about 8 years ago
10.1038/srep36672
Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest
Cited by: 23
Author(s): Witoon Purahong, Walter Durka, Markus Fischer, Sven Dommert, Ricardo Schöps, François Buscot, Tesfaye Wubet
Software Mentions: 2
Published: about 8 years ago
10.1038/srep40189
Diel-scale temporal dynamics recorded for bacterial groups in Namib Desert soil
Cited by: 34
Author(s): Eoin Gunnigle, Aline Frossard, Jean‐Baptiste Ramond, Leandro D. Guerrero, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep40864
Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation
Cited by: 124
Author(s): Kimberly A. Dill‐McFarland, Jacob D. Breaker, Garret Suen
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep40702
Wells provide a distorted view of life in the aquifer: implications for sampling, monitoring and assessment of groundwater ecosystems
Cited by: 63
Author(s): Kathryn Korbel, Anthony A. Chariton, Sarah Stephenson, Paul Greenfield, Grant C. Hose
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep41234
Paenibacillus polymyxa NSY50 suppresses Fusarium wilt in cucumbers by regulating the rhizospheric microbial community
Cited by: 50
Author(s): Lu Shi, Nanshan Du, Sheng Shu, Jian Sun, Shuzhan Li, Shirong Guo
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep43483
Effect of predatory bacteria on the gut bacterial microbiota in rats
Cited by: 51
Author(s): Kenneth Shatzkes, Chi Tang, Eric Singleton, Sean Shukla, Michael Zuena, Sudeep Gupta, Sonal Dharani, Joseph Rinaggio, Nancy Connell, Daniel E. Kadouri
Software Mentions: 2
Published: over 7 years ago
10.1038/srep44182
Stress during pregnancy alters temporal and spatial dynamics of the maternal and offspring microbiome in a sex-specific manner
Cited by: 156
Author(s): Eldin Jašarević, Christopher D. Howard, Ana M. Misic, Daniel P. Beiting, Tracy L. Bale
Software Mentions: 2
Published: over 7 years ago
10.1038/srep44382
Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar
Cited by: 134
Author(s): Amit K. Jaiswal, Y. Elad, Indira Paudel, Ellen R. Graber, Eddie Cytryn, Omer Frenkel
Software Mentions: 2
Published: over 7 years ago
10.1038/srep46297
Inorganic carbon physiology underpins macroalgal responses to elevated CO2
Cited by: 107
Author(s): Christopher E. Cornwall, Andrew T. Revill, Jason M. Hall‐Spencer, Marco Milazzo, John A. Raven, Catriona L. Hurd
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-00953-8
Responses of denitrifying bacterial communities to short-term waterlogging of soils
Cited by: 34
Author(s): Yong Wang, Yoshitaka Uchida, Yumi Shimomura, Hiroko Akiyama, Masahito Hayatsu
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-01359-2
Effect of spatio-temporal shifts in salinity combined with other environmental variables on the ecological processes provided by Zostera noltei meadows
Cited by: 13
Author(s): Ana I. Sousa, Ricardo Calado, Daniel F. R. Cleary, Cláudia Nunes, Manuel A. Coimbra, João Serôdio, Ana I. Lillebø
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-01212-6
Determination of nasal and oropharyngeal microbiomes in a multicenter population-based study – findings from Pretest 1 of the German National Cohort
Cited by: 15
Author(s): Manas K. Akmatov, Nadine Koch, Marius Vital, Wolfgang Ahrens, Dieter Flesch-Janys, Julia Fricke, Anja Gatzemeier, Halina Greiser, Kathrin Günther, Thomas Illig, Rudolf Kaaks, Bastian Krone, Andrea A. Kühn, Jakob Linseisen, Christine Meisinger, Karin B. Michels, Susanne Moebus, Alexandra Nieters, Nadia Obi, Anja Schultze, Julia Six-Merker, Dietmar H. Pieper, Frank Peßler
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-02258-2
Effects of replacing Leymus chinensis with whole-crop wheat hay on Holstein bull apparent digestibility, plasma parameters, rumen fermentation, and microbiota
Cited by: 19
Author(s): Wen-jing Niu, Yang He, Chuanqi Xia, Muhammad Aziz Rahman, Qinghua Qiu, Tao Shao, Yixun Liang, Linbao Ji, Haibo Wang, Binghai Cao
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-02363-2
Seasonal soil microbial responses are limited to changes in functionality at two Alpine forest sites differing in altitude and vegetation
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-03095-z
Comparison of the active and resident community of a coastal microbial mat
Cited by: 33
Author(s): Daniela Clara Cardoso, Anna Sandionigi, Mariana Silvia Cretoiu, Maurizio Casiraghi, Lucas J. Stal, Henk Bolhuis
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-03568-1
An Assessment of Mobile Predator Populations along Shallow and Mesophotic Depth Gradients in the Hawaiian Archipelago
Cited by: 21
Author(s): Jacob Asher, Ivor D. Williams, Euan S. Harvey
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-05241-z
Effects of suspended sediments on the sponge holobiont with implications for dredging management
Cited by: 36
Author(s): Mari Carmen Pineda, Brian Strehlow, Miriam Sternel, Alan Duckworth, Ross Jones, Nicole S. Webster
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-05485-9
Costly neighbours: Heterospecific competitive interactions increase metabolic rates in dominant species
Cited by: 13
Author(s): Matouš Janča, Lumı́r Gvoždı́k
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-06687-x
Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach
Cited by: 43
Author(s): Vera G. Fonseca, Frédéric Sinniger, John Gaspar, Christopher Quince, Simon Creer, Deborah M. Power, Lloyd S. Peck
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-07425-z
High diversity and unique composition of gut microbiomes in pygmy (Kogia breviceps) and dwarf (K. sima) sperm whales
Cited by: 28
Author(s): Patrick M. Erwin, Ryan G. Rhodes, Kevin B. Kiser, Tiffany F. Keenan-Bateman, William A. McLellan, D. Ann Pabst
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-019-49096-y
Miltefosine treatment reduces visceral hypersensitivity in a rat model for irritable bowel syndrome via multiple mechanisms
Cited by: 13
Author(s): Sara Botschuijver, Sophie A. van Diest, Isabelle van Thiel, Rafael Simone Saia, Anne S. Strik, Zhumei Yu, Daniele Maria-Ferreira, Olaf Welting, Dániel Keszthelyi, Gary Jennings, Sigrid E. M. Heinsbroek, Ronald P.J. Oude Elferink, Frank Schuren, Wouter J. de Jonge, René M. van den Wijngaard
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-49220-y
Plumage iridescence is associated with distinct feather microbiota in a tropical passerine
Cited by: 5
Author(s): Veronika Javůrková, Erik D Enbody, Jakub Kreisinger, Kryštof Chmel, Jakub Mrázek, Jordan Karubian
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49893-5
Remission in Crohn’s disease is accompanied by alterations in the gut microbiota and mucins production
Cited by: 28
Author(s): Daniéla Oliveira Magro, Andrey dos Santos, Dioze Guadagnini, Flavia Moreira de Godoy, Sylvia Helena Monteiro Silva, Wilson José Fernandes Lemos, Nicola Vitulo, Sandra Torriani, Lílian Vital Pinheiro, Carlos Augusto Real Martinez, Mário José Abdalla Saad, Cláudio Saddy Rodrigues Coy
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49823-5
Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome
Cited by: 23
Author(s): Carrie E. Jung, Jessica Chopyk, Ji Hyun Shin, Emily S. Lukacz, Linda Brubaker, Leila K. Schwanemann, Rob Knight, Alan J. Wolfe, David T. Pride
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49832-4
Distinct responses from bacterial, archaeal and fungal streambed communities to severe hydrological disturbances
Cited by: 19
Author(s): Giulia Gionchetta, Anna M. Romaní, Francesc Oliva, Joan Artigas
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49854-y
Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents
Cited by: 46
Author(s): Paula Harkes, Afnan Khalil Ahmad Suleiman, S.J.J. van den Elsen, J.J. de Haan, M.H.M. Holterman, Eiko E. Kuramae, J. Helder
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-49555-6
Disentangling the environmental impact of different human disturbances: a case study on islands
Cited by: 16
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-50607-0
Ecotoxicological hazard of a mixture of glyphosate and aminomethylphosphonic acid to the mussel Mytilus galloprovincialis (Lamarck 1819)
Cited by: 26
Author(s): Valerio Matozzo, Marco Munari, Laura Masiero, Livio Finos, María Gabriella Marin
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-51291-w
Sexual and genotypic variation in terpene quantitative and qualitative profiles in the dioecious shrub Baccharis salicifolia
Cited by: 7
Author(s): Xoaquín Moreira, Luis Abdala‐Roberts, Colleen S. Nell, Carla Vázquez‐González, Jessica D. Pratt, Ken Keefover‐Ring, Kailen A. Mooney
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-50952-0
The capacity of wastewater treatment plants drives bacterial community structure and its assembly
Cited by: 22
Author(s): Young Kyung Kim, Keunje Yoo, Min Sung Kim, Il Ki Han, Minjoo Larry Lee, Bo Ram Kang, Tae Kwon Lee, Joonhong Park
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-51570-6
Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab
Cited by: 19
Author(s): Jan Kopecký, Zuzana Samkova, Ensyeh Sarikhani, Martina Kyselková, Marek Omelka, Václav Krištůfek, Jiří Diviš, G. L. Grundmann, Yvan Moënne‐Loccoz, Markéta Ságová-Marečková
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-51525-x
Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet
Cited by: 3
Author(s): Tom Houben, John Penders, Yvonne Oligschlaeger, Inês Magro dos Reis, Marc Jan Bonder, Debby P. Y. Koonen, Jingyuan Fu, Marten H. Hofker, Ronit Shiri-Sverdlov
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-51709-5
Competition structured a Late Cretaceous megaherbivorous dinosaur assemblage
Cited by: 26
Author(s): Jordan C. Mallon
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-53060-1
Limnological effects of a large Amazonian run-of-river dam on the main river and drowned tributary valleys
Cited by: 26
Author(s): Rafael M. Almeida, Stephen K. Hamilton, Emma J. Rosi‐Marshall, João Durval Arantes, Nathan Barros, Gina Boemer, Anderson Gripp, Vera L. M. Huszar, Pedro C. Junger, M. G. de Lima, F. Pacheco, Dirceu Tornavoi de Carvalho, Alexander J. Reisinger, Lúcia Helena Sampaio da Silva, Fábio Roland
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-53073-w
Microbial changes in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients
Cited by: 31
Author(s): Alexa M. G. A. Laheij, Judith E. Raber-Durlacher, Renée G. A. Koppelmans, Marie-Charlotte D.N.J.M. Huysmans, Carin Potting, Stephanie J. M. van Leeuwen, Mette D. Hazenberg, Michael T. Brennan, Inger von Bültzingslöwen, Jan‐Erik Johansson, J.J. de Soet, Thijs M. Haverman, Mark J. Buijs, Bernd W. Brandt, F.R. Rozema, Nicole M. A. Blijlevens, Egija Zaura
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-53769-z
Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome
Cited by: 16
Author(s): Rafael José Vivero, Marcela Villegas-Plazas, Gloria Cadavid-Restrepo, Claudia Ximena Moreno Herrera, Sandra Uribe, Howard Junca
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-019-54771-1
Effects of Long-term Cotton Continuous Cropping on Soil Microbiome
Cited by: 29
Author(s): Hui Xi, Jili Shen, Zhong Qu, Dingyi Yang, Shiming Liu, Xiaoqin Nie, Lu Zhu
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-55063-4
Land use change effects on diversity of soil bacterial, Acidobacterial and fungal communities in wetlands of the Sanjiang Plain, northeastern China
Cited by: 57
Author(s): Xin Sui, Rongtao Zhang, Beat Frey, Libin Yang, Mai‐He Li, Hongwei Ni
Software Mentions: 2
Published: almost 5 years ago