10.1038/s41598-020-66056-z

The microbial biogeography of the gastrointestinal tract of preterm and term lambs
Cited by: 8
Author(s): Clara Yieh Lin Chong, Tommi Vatanen, Mark Oliver, Frank H. Bloomfield, Justin M. O’Sullivan
Software Mentions: 2
Published: about 6 years ago

10.1007/s12223-020-00828-y

Denaturing gradient gel electrophoresis and multi-SIR profiles of soil microbial communities from a karst doline at Aggtelek National Park, Hungary
Cited by: 3
Author(s): Márton Mucsi, Gergely Krett, Tibor Szili‐Kovács, János Móga, Andrea K. Borsodi
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-66598-2

Revealing links between gut microbiome and its fungal community in Type 2 Diabetes Mellitus among Emirati subjects: A pilot study
Cited by: 31
Author(s): Mohammad Tahseen Al Bataineh, Nihar Ranjan Dash, Pierre Bel Lassen, Bayan Hassan Banimfreg, Aml Mohamed Nada, Eugeni Belda, Karine Clément
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-66607-4

Taxonomic and Functional Differences in Cervical Microbiome Associated with Cervical Cancer Development
Cited by: 31
Author(s): Charles Nkufi Tango, Seung‐Woo Seo, Minji Kwon, Dong-Ock Lee, Ha Kyun Chang, Mi Kyung Kim
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-66093-8

Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere
Cited by: 7
Author(s): Vanessa Oliveira, Patrícia Martins, Bruna Marques, Daniel F. R. Cleary, Ana I. Lillebø, Ricardo Calado
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.4965

Diversity, host-specificity and stability of sponge-associated fungal communities of co-occurring sponges
Cited by: 23
Author(s): Mary Nguyen, Torsten Thomas
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-020-67443-2

Bladder cancer-related microbiota: examining differences in urine and tissue samples
Cited by: 57
Author(s): Bassel Mansour, Ádám Monyók, Nóra Makra, Márió Gajdács, István Vadnay, Balázs Ligeti, János Juhász, Dóra Szabó, Eszter Ostorházi
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0110430

Evaluating the Spatio-Temporal Factors that Structure Network Parameters of Plant-Herbivore Interactions
Cited by: 48
Author(s): Antonio López‐Carretero, Cecilia Díaz‐Castelazo, Karina Boege, Victor Rico‐Gray
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-020-68386-4

Seasonal and environmental variation in volatile emissions of the New Zealand native plant Leptospermum scoparium in weed-invaded and non-invaded sites
Cited by: 10
Author(s): Evans Effah, D. Paul Barrett, Paul G. Peterson, Murray A. Potter, Jarmo K. Holopainen, Andrea Clavijo McCormick
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0168391

The Roles of Sea-Ice, Light and Sedimentation in Structuring Shallow Antarctic Benthic Communities
Cited by: 41
Author(s): Graeme F. Clark, Jonathan S. Stark, Anne S. Palmer, Martin J. Riddle, Emma L. Johnston
Software Mentions: 2
Published: over 9 years ago

10.1186/s12881-020-01115-w

Associations of NOD2 polymorphisms with Erysipelotrichaceae in stool of in healthy first degree relatives of Crohn’s disease subjects
Cited by: 10
Author(s): Williams Turpin, Larbi Bedrani, Osvaldo Espin‐Garcia, Wei Xu, Mark S. Silverberg, Michelle I. Smith, Juan A. Raygoza Garay, Sun-Ho Lee, David S. Guttman, Anne M. Griffiths, Paul Martin, Remo Panaccione, Hien Q. Huynh, Hillary Steinhart, Guy Aumais, Levinus A. Dieleman, Dan Turner, Andrew D. Paterson, Kenneth Croitoru
Software Mentions: 2
Published: almost 6 years ago

10.1186/s42523-021-00119-y

Temporal and nutritional effects on the weaner pig ileal microbiota
Cited by: 2
Author(s): Jolinda Pollock, Laura Glendinning, L. A. Smith, Hamna Mohsin, David L. Gally, Michael R. Hutchings, J.G.M. Houdijk
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-69295-2

NOD1 deficiency promotes an imbalance of thyroid hormones and microbiota homeostasis in mice fed high fat diet
Cited by: 13
Author(s): Silvia González-Ramos, Marta Paz-García, Victoria Fernández-García, Kevin J. Portune, Emilio Felino Acosta-Medina, Yolanda Sanz, Antonio Castrillo, Paloma Martı́n-Sanz, Marı́a Jesús Obregón, Lisardo Boscá
Software Mentions: 2
Published: about 6 years ago

10.1128/mSphere.00991-20

Effects of Seasonal Anoxia on the Microbial Community Structure in Demosponges in a Marine Lake in Lough Hyne, Ireland
Cited by: 4
Author(s): Astrid Schuster, Brian Strehlow, Lisa K. Eckford-Soper, Rob McAllen, Donald E. Canfield
Software Mentions: 2
Published: over 5 years ago

10.3390/foods9050595

Molecular Characterization and Enological Potential of A High Lactic Acid-Producing Lachancea thermotolerans Vineyard Strain
Cited by: 27
Author(s): Georgios Sgouros, Athanasios Mallouchos, Maria-Evangelia Filippousi, Georgios Banilas, Aspasia Nisiotou
Software Mentions: 2
Published: over 6 years ago

10.3390/foods9101381

Qualitative Factor-Based Comparison of NMR, Targeted and Untargeted GC-MS and LC-MS on the Metabolomic Profiles of Rioja and Priorat Red Wines
Cited by: 6
Author(s): Dimitrios Kioroglou, Albert Mas, María del Carmen Portillo Guisado
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0201269

Variation in species diversity of deep-water megafauna assemblages in the Caribbean across depth and ecoregions
Cited by: 9
Author(s): Iván Hernández-Ávila, Edlin Guerra‐Castro, Carolina Bracho, Martín Rada, Frank A. Ocaña, Daniel Pech
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.8004

Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure
Cited by: 26
Author(s): Anne L. Dunlop, Anna K. Knight, Glen A. Satten, Anya Cutler, Michelle L. Wright, Rebecca Mitchell, Timothy D. Read, Jennifer G. Mullé, Vicki Hertzberg, Cherie C. Hill, Alicia K. Smith, Elizabeth J. Corwin
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0151739

Ocean Acidification Affects the Phyto-Zoo Plankton Trophic Transfer Efficiency
Cited by: 46
Author(s): Gemma Cripps, Kevin J. Flynn, Penelope K. Lindeque
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-020-70307-4

Monitoring of biofouling communities in a Portuguese port using a combined morphological and metabarcoding approach
Cited by: 19
Author(s): Joana Azevedo, Jorge T. Antunes, André M. Machado, Vítor Vasconcelos, Pedro N. Leão, Elsa Froufe
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-70141-8

Influence of 16S rRNA target region on the outcome of microbiome studies in soil and saliva samples
Cited by: 20
Author(s): Ana Soriano‐Lerma, Virginia Pérez-Carrasco, M. Sánchez‐Marañón, Matilde Ortiz-González, Victoria Sánchez-Martín, J Gijón, José María Navarro-Marí, José A. García‐Salcedo, Miguel Soriano
Software Mentions: 2
Published: about 6 years ago

10.3390/foods10061271

Combining Culture-Dependent and Culture-Independent Methods: New Methodology Insight on the Vibrio Community of Ruditapes philippinarum
Cited by: 8
Author(s): Angela Zampieri, Massimiliano Babbucci, Lisa Carraro, Massimo Milan, Luca Fasolato, Barbara Cardazzo
Software Mentions: 2
Published: about 5 years ago

10.1186/s42523-021-00086-4

Fish predation on corals promotes the dispersal of coral symbionts
Cited by: 22
Author(s): Carsten G. B. Grupstra, Kristen M. Rabbitt, Lauren I. Howe‐Kerr, Adrienne M. S. Correa
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-020-00036-6

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study
Cited by: 10
Author(s): Karen R. Muñana, Megan E. Jacob, Benjamin J. Callahan
Software Mentions: 2
Published: over 6 years ago

10.1186/s42523-020-00030-y

Putative modulation of the gut microbiome by probiotics enhances preference for novelty in a preliminary double-blind placebo-controlled study in ferrets
Cited by: 5
Author(s): Supritha Dugyala, Travis Ptacek, Jeremy M. Simon, Yuhui Li, Flavio Fröhlich
Software Mentions: 2
Published: over 6 years ago

10.3390/foods9121792

Highly Branched Neo-Fructans (Agavins) Attenuate Metabolic Endotoxemia and Low-Grade Inflammation in Association with Gut Microbiota Modulation on High-Fat Diet-Fed Mice
Cited by: 16
Author(s): Alicia Huazano-García, María Blanca Silva-Adame, Juan Vázquez-Martínez, Argel Gastélum-Arellánez, Lino Sánchez-Segura, Mercedes G. López
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-71422-y

Ethnic variation of oral microbiota in children
Cited by: 13
Author(s): Thyagaseely Sheela Premaraj, Raven Vella, Jennifer Chung, Qingqi Lin, Hunter Panier, Kori Underwood, Sundaralingam Premaraj, Yanjiao Zhou
Software Mentions: 2
Published: almost 6 years ago

10.3390/foods10061259

Amaranth Supplementation Improves Hepatic Lipid Dysmetabolism and Modulates Gut Microbiota in Mice Fed a High-Fat Diet
Cited by: 4
Author(s): Yongshou Yang, Rikako Fukui, Huijuan Jia, Harubumi Kato
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0178869

Low pH reduces the virulence of black band disease on Orbicella faveolata
Cited by: 12
Author(s): Erinn M. Muller, Nicole M. Leporacci, Keir J. Macartney, Alessandra G. Shea, Rachel E. Crane, Emily R. Hall, Kim B. Ritchie
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-020-72011-9

Influence of host genetics in shaping the rumen bacterial community in beef cattle
Cited by: 31
Author(s): Waseem Abbas, Jeremy Howard, Henry A. Paz, Kristin E Hales, John W. Wells, L. A. Kuehn, Galen E. Erickson, Matthew L Spangler, Samodha C. Fernando
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.01844

The Microbiome of Seriola lalandi of Wild and Aquaculture Origin Reveals Differences in Composition and Potential Function
Cited by: 55
Author(s): C. Ramı́rez, Jaime Romero
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-72032-4

Host phylogeny and life history stage shape the gut microbiome in dwarf (Kogia sima) and pygmy (Kogia breviceps) sperm whales
Cited by: 4
Author(s): Elizabeth R Denison, Ryan G. Rhodes, William A. McLellan, D. Ann Pabst, Patrick M. Erwin
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-71458-0

Investigation into the effect of divergent feed efficiency phenotype on the bovine rumen microbiota across diet and breed
Cited by: 18
Author(s): Emily McGovern, M. McGee, C.J. Byrne, David A. Kenny, A. K. Kelly, Sinéad M. Waters
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-72286-y

Contrasting microbiota profiles observed in children carrying either Blastocystis spp. or the commensal amoebas Entamoeba coli or Endolimax nana
Cited by: 18
Author(s): Juan F. Alzate, Miguel Toro-Londoño, Felipe Cabarcas, Gisela María García-Montoya, Ana Luz Galván-Díaz
Software Mentions: 2
Published: almost 6 years ago

10.3390/pathogens10050593

Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by Leishmania major in Experimental Murine Models
Cited by: 4
Author(s): Adwaita R. Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L. Siqueira-Neto, James H. McKerrow, Pieter C. Dorrestein, Laura-Isobel McCall
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms9051037

The Influence of Diet and Sex on the Gut Microbiota of Lean and Obese JCR:LA-cp Rats
Cited by: 5
Author(s): Craig T. Resch, Mihir Parikh, J. Alejandro Austria, Spencer Proctor, Thomas Netticadan, Heather Blewett, Grant N. Pierce
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-72679-z

Edaphic factors and plants influence denitrification in soils from a long-term arable experiment
Cited by: 1
Author(s): Ian M. Clark, Qingling Fu, Maïder Abadie, E. R. Dixon, Aimeric Blaud, P. R. Hirsch
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-73085-1

Distinct lung microbiota associate with HIV-associated chronic lung disease in children
Cited by: 8
Author(s): Sudha Bhadriraju, Douglas Fadrosh, Meera K. Shenoy, David L. Lin, Kole Lynch, Kathryn McCauley, Rashida A Ferrand, Edith Majonga, Grace McHugh, Laurence Huang, Susan V. Lynch, John Metcalfe
Software Mentions: 2
Published: almost 6 years ago

10.1186/s42523-021-00107-2

Sustainable plant-based diets promote rainbow trout gut microbiota richness and do not alter resistance to bacterial infection
Cited by: 13
Author(s): David Pérez-Pascual, Ana Elena Pérez‐Cobas, Dimitri Rigaudeau, Tatiana Rochat, Jean‐François Bernardet, Sandrine Skiba‐Cassy, Yann Marchand, Éric Duchaud, Jean‐Marc Ghigo
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.10757

Longitudinal metabarcode analysis of karst bacterioplankton microbiomes provide evidence of epikarst to cave transport and community succession
Cited by: 7
Author(s): Kendall V Morse, Dylan R Richardson, Teresa L. Brown, Robert D. VanGundy, A. Bruce Cahoon
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22041649

Gut Microbiota Profile in Children with IgE-Mediated Cow’s Milk Allergy and Cow’s Milk Sensitization and Probiotic Intestinal Persistence Evaluation
Cited by: 10
Author(s): Maurizio Mennini, Sofia Reddel, Federica Del Chierico, Simone Gardini, Andrea Quagliariello, Pamela Vernocchi, Rocco Valluzzi, Vincenzo Fierro, Carla Riccardi, Tania Napolitano, Alessandro Fiocchi, Lorenza Putignani
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-74122-9

The influences of low protein diet on the intestinal microbiota of mice
Cited by: 18
Author(s): Hiroaki Masuoka, Wataru Suda, Eriko Tomitsuka, Chie Shindo, Lena Takayasu, Paul F. Horwood, Andrew R. Greenhill, Masahira Hattori, Masahiro Umezaki, Kazuhiro Hirayama
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.6414

Evaluation of DESS as a storage medium for microbial community analysis
Cited by: 17
Author(s): Kevin M Lee, Madison Adams, Jonathan L. Klassen
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-74193-8

Different types of agricultural land use drive distinct soil bacterial communities
Cited by: 15
Author(s): Shin Ae Lee, Jeong Myeong Kim, Yiseul Kim, Jae–Ho Joa, Seong-Soo Kang, Jae-Hyung Ahn, Min‐Cheol Kim, Jaekyeong Song, Hang-Yeon Weon
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12916-021-01991-w

Gestational diabetes mellitus is associated with the neonatal gut microbiota and metabolome
Cited by: 32
Author(s): Ting Chen, Yufeng Qin, Minjian Chen, Yuqing Zhang, Xu Wang, Tianyu Dong, Guanglin Chen, Xian Sun, Ting Lu, Richard Allen White, Ye Peng, Hein Min Tun, Yankai Xia
Software Mentions: 2
Published: over 5 years ago

10.1152/ajpgi.00046.2020

Ridinilazole, a narrow spectrum antibiotic for treatment of <i>Clostridioides difficile</i> infection, enhances preservation of microbiota-dependent bile acids
Cited by: 24
Author(s): Xi Qian, Karin Yanagi, Anne Kane, Nicholas Alden, Ming Lei, David R. Snydman, Richard Vickers, Kyongbum Lee, Cheleste M. Thorpe
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-74678-6

Risk factors for type 1 diabetes, including environmental, behavioural and gut microbial factors: a case–control study
Cited by: 16
Author(s): Deborah Traversi, Ivana Rabbone, Giacomo Scaioli, Camilla Vallini, Giulia Carletto, Irene Racca, Ugo Ala, Marilena Durazzo, Alessandro Collo, Arianna Ferro, Deborah Carrera, Silvia Savastio, Francesco Cadario, Roberta Siliquini, Fránco Cerutti
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12903-019-0747-z

Impact of polyols on Oral microbiome of Estonian schoolchildren
Cited by: 21
Author(s): Jelena Štšepetova, Jaak Truu, Riina Runnel, Rita Nõmmela, Mare Saag, Jana Olak, Hiie Nõlvak, Jens‐Konrad Preem, Kristjan Oopkaup, Kaarel Krjutškov, Eino Honkala, Sisko Honkala, Kauko K. Mäkinen, Pirkko‐Liisa Mäkinen, Tero Vahlberg, Joan Vermeiren, Douwina Bosscher, Peter de Cock, Reet Mändar
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.621879

Changes in Gastric Corpus Microbiota With Age and After Helicobacter pylori Eradication: A Long-Term Follow-Up Study
Cited by: 13
Author(s): Cheol Min Shin, Nayoung Kim, Ji Hyun Park, Dong Hoon Lee
Software Mentions: 2
Published: over 5 years ago

10.1186/s12879-020-05427-3

Altered respiratory microbiota composition and functionality associated with asthma early in life
Cited by: 11
Author(s): Mohammad Tahseen Al Bataineh, Rifat Hamoudi, Nihar Ranjan Dash, Rakhee K. Ramakrishnan, Mohamad A. Almasalmeh, Hanan Abdulgader Sharif, Mohamed S. Al-Hajjaj, Qutayba Hamid
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.02515

Chinese Black Truffle-Associated Bacterial Communities of Tuber indicum From Different Geographical Regions With Nitrogen Fixing Bioactivity
Cited by: 27
Author(s): Carlos Juan, Jiamei Li, Yang-Jing Tang, Yong-Mei Xing, Panzhe Qiao, Yang Li, Pei‐Gui Liu, Shun‐Xing Guo
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0193652

Next generation sequencing for gut microbiome characterization in rainbow trout (Oncorhynchus mykiss) fed animal by-product meals as an alternative to fishmeal protein sources
Cited by: 98
Author(s): Simona Rimoldi, Genciana Terova, Chiara Ascione, Riccardo Giannico, Fabio Brambilla
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-75786-z

Desacetyl-α-MSH and α-MSH have sex specific interactions with diet to influence mouse gut morphology, metabolites and microbiota
Cited by: 2
Author(s): Bo Sun, Tommi Vatanen, Thilini N. Jayasinghe, Elizabeth McKenzie, Rinki Murphy, Justin M. O’Sullivan
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-76072-8

Effect of the similarity of gut microbiota composition between donor and recipient on graft function after living donor kidney transplantation
Cited by: 7
Author(s): Ji Eun Kim, Hyo Eun Kim, Hyun-Jeong Cho, Ji In Park, Min Jung Kwak, Byung Yong Kim, Seung Hee Yang, Jung Pyo Lee, Yon Su Kim, Kwon Wook Joo, Yon Su Kim, Bong Soo Kim, Hajeong Lee
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.862

Effect of different heterotrophic plate count methods on the estimation of the composition of the culturable microbial community
Cited by: 24
Author(s): Eva Theres Gensberger, Eva-Maria Gössl, Livio Antonielli, Angela Sessitsch, Tanja Kostić
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2020.602010

Metagenomic Insights Into the Microbial Assemblage Capable of Quorum Sensing and Quorum Quenching in Particulate Organic Matter in the Yellow Sea
Cited by: 7
Author(s): Ying Su, Yunxia Yang, Xiaoyu Zhu, Xiao-Hua Zhang, Min Yu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-76590-5

Seasonal impact of grazing, viral mortality, resource availability and light on the group-specific growth rates of coastal Mediterranean bacterioplankton
Cited by: 9
Author(s): Olga Sánchez, Isabel Ferrera, Isabel Mabrito, Carlota R. Gazulla, Marta Sebastián, Adrià Auladell, Carolina Marín-Vindas, Clara Cardelús, Isabel Sanz-Sáez, Massimo C. Pernice, Cèlia Marrasé, M. Montserrat Sala, Josep M. Gasol
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0195967

Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout
Cited by: 18
Author(s): Omolola C. Betiku, Carl J. Yeoman, T. Gibson Gaylord, Benjamin Americus, Sarah K. Olivo, G. C. Duff, Wendy M. Sealey
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0202863

Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: Biological inventory, latitudinal variation and species turnover
Cited by: 6
Author(s): Omar Valencia‐Méndez, Fabián Alejandro Rodríguez‐Zaragoza, Luis E. Calderón-Aguilera, Omár Domínguez-Domínguez, Andrés López‐Pérez
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0207703

The influence of depth and a subsea pipeline on fish assemblages and commercially fished species
Cited by: 29
Author(s): Todd Bond, Julian C. Partridge, Michael D. Taylor, Tim F. Cooper, Dianne L. McLean
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0141373

Hybridization between Yellowstone Cutthroat Trout and Rainbow Trout Alters the Expression of Muscle Growth-Related Genes and Their Relationships with Growth Patterns
Cited by: 5
Author(s): Carl O. Ostberg, Dorothy M. Chase, Lorenz Hauser
Software Mentions: 2
Published: almost 11 years ago

10.7717/peerj.10103

The role of geomorphic zonation in long-term changes in coral-community structure on a Caribbean fringing reef
Cited by: 5
Author(s): Alexis Enrique Medina-Valmaseda, Rosa E. Rodríguez-Martínez, Lorenzo Álvarez‐Filip, Eric Jordán-Dahlgren, Paul Blanchon
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0192772

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption
Cited by: 79
Author(s): Jeremiah J. Minich, Megan M. Morris, Matt Brown, Michael P. Doane, Matthew S. Edwards, Todd P. Michael, Elizabeth A. Dinsdale
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0223026

The responses of extracellular enzyme activities and microbial community composition under nitrogen addition in an upland soil
Cited by: 37
Author(s): Sami Ullah, Chao Ai, Shaohui Huang, Jiajia Zhang, Jia Liu, Jinlong Ma, Wei Zhou, Ping He
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0234830

Climate gradients, and patterns of biodiversity and biotic homogenization in urban residential yards
Cited by: 5
Author(s): Elizabeth A. Bergey, Benjamin E. Whipkey
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0233065

Single-cell amplicon sequencing reveals community structures and transmission trends of protist-associated bacteria in a termite host
Cited by: 6
Author(s): M. A. Stephens, Daniel J. Gage
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.4441

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil
Cited by: 29
Author(s): Lorena B Bissoli, Ângelo F. Bernardino
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0145191

Warming and Elevated CO2 Interact to Drive Rapid Shifts in Marine Community Production
Cited by: 17
Author(s): Cascade J. B. Sorte, Matthew E. S. Bracken
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0077527

Availability of Ectomycorrhizal Fungi to Black Spruce above the Present Treeline in Eastern Labrador
Cited by: 19
Author(s): Laura Reithmeier, Gavin Kernaghan
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0123943

Passive Acoustic Monitoring of the Temporal Variability of Odontocete Tonal Sounds from a Long-Term Marine Observatory
Cited by: 18
Author(s): Tzu‐Hao Lin, Hon‐Tsen Yu, Chi‐Fang Chen, Lien‐Siang Chou
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0123216

Sinonasal Microbiome Sampling: A Comparison of Techniques
Cited by: 47
Author(s): Ahmed Bassiouni, Edward John Cleland, Alkis J. Psaltis, Sarah Vreugde, Peter‐John Wormald
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0250975

Genomics of Staphylococcus aureus ocular isolates
Cited by: 9
Author(s): William L. Johnson, Michael B. Sohn, Samantha M. Taffner, Payel Chatterjee, Paul M. Dunman, Nicole Pecora, Rachel A. F. Wozniak
Software Mentions: 2
Published: over 5 years ago

10.3390/jof7070578

Fungal Endophytic Community and Diversity Associated with Desert Shrubs Driven by Plant Identity and Organ Differentiation in Extremely Arid Desert Ecosystem
Cited by: 19
Author(s): Yiling Zuo, Li Xia, Jingya Yang, Jiaqiang Liu, Lili Zhao, Xueli He
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0186929

DNA metabarcoding reveals diverse diet of the three-spined stickleback in a coastal ecosystem
Cited by: 56
Author(s): Eglė Jakubavičiūtė, Ulf Bergström, Johan Eklöf, Quiterie Haenel, Sarah J. Bourlat
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0038073

Organic Farming and Landscape Structure: Effects on Insect-Pollinated Plant Diversity in Intensively Managed Grasslands
Cited by: 48
Author(s): Eileen F. Power, Daniel L. Kelly, Jane C. Stout
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0184611

Long-term no-till: A major driver of fungal communities in dryland wheat cropping systems
Cited by: 54
Author(s): Dipak Sharma‐Poudyal, Daniel Schlatter, Chuntao Yin, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0229259

Kelp forests at the end of the earth: 45 years later
Cited by: 34
Author(s): Alan M. Friedlander, Enric Ballesteros, Tom W. Bell, Jennifer E. Caselle, Claudio Campagna, Whitney Goodell, Mathias Hüne, Alex Muñoz, Pelayo Salinas‐de‐León, Enric Sala, Paul K. Dayton
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0167405

Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach
Cited by: 47
Author(s): Véronique Gourmelon, Laurent Maggia, Jeff R. Powell, Sarah Gigante, Sara Hortal, Claire Gueunier, Kelly Letellier, Fabian Carriconde
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0106764

Helicobacter hepaticus Infection Promotes Hepatitis and Preneoplastic Foci in Farnesoid X Receptor (FXR) Deficient Mice
Cited by: 12
Author(s): Alton G. Swennes, Alexander Sheh, N. Parry, Sureshkumar Muthupalani, Kvin Lertpiriyapong, Alexis García, James G. Fox
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0227967

Microbiome signatures in neonatal central line associated bloodstream infections
Cited by: 13
Author(s): Mohan Pammi, Santosh Thapa, Miriam Balderas, Jessica K. Runge, Alamelu Venkatachalam, Ruth Ann Luna
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21072417

Transcriptomic Profiling in Fins of Atlantic Salmon Parasitized with Sea Lice: Evidence for an Early Imbalance Between Chalimus-Induced Immunomodulation and the Host’s Defense Response
Cited by: 18
Author(s): Navaneethaiyer Umasuthan, Xi Xue, Albert Caballero‐Solares, Surendra Kumar, JD Westcott, Z Chen, Stanko Škugor, Barbara F. Nowak, RG Taylor, ML Rise
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0109276

Sensitivity and Tolerance of Riparian Arthropod Communities to Altered Water Resources along a Drying River
Cited by: 9
Author(s): Kevin E. McCluney, John L. Sabo
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0211271

Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
Cited by: 19
Author(s): Pablo de Jesús Suárez-Moo, Andrew P. Vovides, M. Patrick Griffith, Francisco Barona‐Gómez, Angélica Cibrián-Jaramillo
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0192391

The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: Distribution, diversity and composition of nosZ gene
Cited by: 11
Author(s): Maryam Yazdani Foshtomi, Frédérik Leliaert, Sofie Derycke, Anne Willems, Magda Vincx, Jan Vanaverbeke
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0204612

Habitat-specific variation in gut microbial communities and pathogen prevalence in bumblebee queens (Bombus terrestris)
Cited by: 33
Author(s): Lien Bosmans, María I. Pozo, Christel Verreth, Sam Crauwels, Liesbet Wilberts, Islam S. Sobhy, Félix Wäckers, Hans Jacquemyn, Bart Lievens
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0155239

Effects of Dispersal and Initial Diversity on the Composition and Functional Performance of Bacterial Communities
Cited by: 22
Author(s): Yinghua Zha, Mercè Berga, Jérôme Comte, Silke Langenheder
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0194881

Variation in the microbiome of the urogenital tract of Chlamydia-free female koalas (Phascolarctos cinereus) with and without ‘wet bottom’
Cited by: 7
Author(s): Alistair R. Legione, Jemima Amery-Gale, Michael Lynch, Leesa Haynes, James R. Gilkerson, Fiona M. Sansom, Joanne M. Devlin
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0167161

Few Ant Species Play a Central Role Linking Different Plant Resources in a Network in Rupestrian Grasslands
Cited by: 34
Author(s): Fernanda Vieira da Costa, Marco A. R. Mello, Judith L. Bronstein, Tadeu J. Guerra, Renata L. Muylaert, Alice Carvalho Leite, Frederico S. Neves
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0232181

Microbiome profile associated with malignant pleural effusion
Cited by: 6
Author(s): Samira Shojaee, Anukriti Sharma, Neil Gottel, Trinidad Sánchez, Jack A. Gilbert, Najib M. Rahman
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0225369

Normal and altered masticatory load impact on the range of craniofacial shape variation: An analysis of pre-Hispanic and modern populations of the American Southern Cone
Cited by: 12
Author(s): Andrea Eyquem, Susan Kuzminsky, J. Tor Aguilera, Williams Astudillo, Viviana Toro‐Ibacache
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0215859

The Plastisphere – Uncovering tightly attached plastic “specific” microorganisms
Cited by: 139
Author(s): Inga V. Kirstein, Antje Wichels, Elisabeth Gullans, Georg Krohne, Gunnar Gerdts
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0042651

Assembly-History Dynamics of a Pitcher-Plant Protozoan Community in Experimental Microcosms
Cited by: 15
Author(s): Kohmei Kadowaki, Brian D. Inouye, Thomas E. Miller
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0189423

Analysis of the tonsillar microbiome in young adults with sore throat reveals a high relative abundance of Fusobacterium necrophorum with low diversity
Cited by: 15
Author(s): T. Prescott Atkinson, Robert M. Centor, Li Xiao, Fuchenchu Wang, Xiangqin Cui, William Van Der Pol, Casey D. Morrow, Amy E. Ratliff, Donna M. Crabb, Arthur H. Totten, Carlos A. Estrada, Michael B. Faircloth, Ken B. Waites
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0235388

Thermal traits for reproduction and recruitment differ between Arctic and Atlantic kelp Laminaria digitata
Cited by: 18
Author(s): Neusa Martins, Gareth A. Pearson, Julien Bernard, Ester Á. Serrão, Inka Bartsch
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0221868

Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal
Cited by: 11
Author(s): Dibesh Karmacharya, Prajwol Manandhar, Sulochana Manandhar, Adarsh Man Sherchan, Ajay Sharma, Jyoti Joshi, Manisha Bista, Shailendra Bajracharya, Nagendra Awasthi, Netra Prasad Sharma, Bronwyn Llewellyn, Lisette P. Waits, Kanchan Thapa, Marcella J. Kelly, Momchilo Vuyisich, Shawn R. Starkenburg, Jean‐Marc Hero, Jane Hughes, Claudia Wultsch, Laura D. Bertola, Nicholas M. Fountain-Jones, Amit Kumar Sinha
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0245030

Response of benthic macroinvertebrates to dam removal in the restoration of the Boardman River, Michigan, USA
Cited by: 6
Author(s): David C. Mahan, Joel T. Betts, Eric A. Nord, Fred Van Dyke, Jessica M. Outcalt
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0141707

Contemporary Land Change Alters Fish Communities in a San Francisco Bay Watershed, California, U.S.A.
Cited by: 3
Author(s): Kristina Cervantes-Yoshida, Robert A. Leidy, Stephanie M. Carlson
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0103581

Daily Rhythm of Mutualistic Pollinator Activity and Scent Emission in Ficus septica: Ecological Differentiation between Co-Occurring Pollinators and Potential Consequences for Chemical Communication and Facilitation of Host Speciation
Cited by: 18
Author(s): Lucie Conchou, Léa Cabioch, Lillian Jennifer Rodriguez, Finn Kjellberg
Software Mentions: 2
Published: about 12 years ago

10.3390/jof7090751

Effect of a Wood-Based Carrier of Trichoderma atroviride SC1 on the Microorganisms of the Soil
Cited by: 4
Author(s): Hamza Chammem, Livio Antonielli, Andrea Nesler, Massimo Pindo, I. Pertot
Software Mentions: 2
Published: almost 5 years ago

10.3390/jof7090775

Macrofungi Cultivation in Shady Forest Areas Significantly Increases Microbiome Diversity, Abundance and Functional Capacity in Soil Furrows
Cited by: 6
Author(s): Dong Liu, Yanliang Wang, Peng Zhang, Fuqiang Yu, Jesús Pérez‐Moreno
Software Mentions: 2
Published: almost 5 years ago