cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/nu9040393

Differential Effect of Sucrose and Fructose in Combination with a High Fat Diet on Intestinal Microbiota and Kidney Oxidative Stress
Cited by: 64
Author(s): Adriana Rosas-Villegas, Mónica Sánchez‐Tapia, Azalia Ávila-Nava, V Mercy Ramírez, Armando R. Tovar, Nimbe Torres
Software Mentions: 2
Published: over 7 years ago

10.3390/nu13020636

Gut Microbiota Bacterial Species Associated with Mediterranean Diet-Related Food Groups in a Northern Spanish Population
Cited by: 39
Author(s): Carles Rosés, Amelia Marti, Salvador Quintana, José Ignacio Riezu-Boj, Julian Martínez, Fermı́n I. Milagro, Anna Barceló
Software Mentions: 2
Published: almost 4 years ago

10.3390/nu13051496

Effects of Whole-Grain and Sugar Content in Infant Cereals on Gut Microbiota at Weaning: A Randomized Trial
Cited by: 8
Author(s): Julio Plaza‐Díaz, María Luisa Bernal, Sophie Schutte, Empar Chenoll, Salvador Genovés, Francisco M. Codoñer, Ángel Gil, Luis Manuel Sánchez-Siles
Software Mentions: 2
Published: over 3 years ago

10.3390/nu12072088

Sex-Specific Differences in the Gut Microbiome in Response to Dietary Fiber Supplementation in IL-10-Deficient Mice
Cited by: 16
Author(s): Zhengxiao Zhang, Jae Eun Hyun, Aducio Thiesen, Heekuk Park, Naomi Hotte, Hikaru Watanabe, Takanobu Higashiyama, Karen Madsen
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-59104-1

Toxic tall fescue grazing increases susceptibility of the Angus steer fecal microbiota and plasma/urine metabolome to environmental effects
Cited by: 10
Author(s): Ryan S. Mote, Nicholas S. Hill, Joseph H. Skarlupka, ViLinh Tran, Douglas I. Walker, Zachary B. Turner, Zachary P. Sanders, Dean P. Jones, Garret Suen, Nikolay M. Filipov
Software Mentions: 2
Published: almost 5 years ago

10.1111/1755-0998.12943

Using metabarcoding to compare the suitability of two blood‐feeding leech species for sampling mammalian diversity in North Borneo
Cited by: 28
Author(s): Rosie Drinkwater, Ida Bærholm Schnell, Kristine Bohmann, Henry Bernard, Géraldine Veron, Elizabeth L. Clare, M. Thomas P. Gilbert, Stephen J. Rossiter
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules21121672

Extraction and Quantification of Bioactive Tyrian Purple Precursors: A Comparative and Validation Study from the Hypobranchial Gland of a Muricid Dicathais orbita
Cited by: 11
Author(s): Roselyn Valles-Regino, Peter Mouatt, David Rudd, Lachlan H Yee, Kirsten Benkendorff
Software Mentions: 2
Published: almost 8 years ago

10.3390/molecules25143200

Herbivory and Attenuated UV Radiation Affect Volatile Emissions of the Invasive Weed Calluna vulgaris
Cited by: 8
Author(s): Evans Effah, D. Paul Barrett, Paul G. Peterson, Jason J. Wargent, Murray A. Potter, Jarmo K. Holopainen, Andrea Clavijo McCormick
Software Mentions: 2
Published: over 4 years ago

10.1002/mnfr.201900403

A Two‐Week Treatment with Plant Extracts Changes Gut Microbiota, Caecum Metabolome, and Markers of Lipid Metabolism in ob/ob Mice
Cited by: 14
Author(s): Amandine Brochot, Vincent Azalbert, Jean‐François Landrier, Franck Tourniaire, Matteo Sérino
Software Mentions: 2
Published: over 5 years ago

10.1002/mnfr.202000455

Fermentation Kinetics of Selected Dietary Fibers by Human Small Intestinal Microbiota Depend on the Type of Fiber and Subject
Cited by: 12
Author(s): Mara P.H. van Trijp, Christiane Rösch, Ran An, Shohreh Keshtkar, Madelon J Logtenberg, Gerben D. A. Hermes, Erwin G. Zoetendal, Henk A. Schols, Guido Hooiveld
Software Mentions: 2
Published: about 4 years ago

10.1038/s41385-021-00399-2

Emc3 maintains intestinal homeostasis by preserving secretory lineages
Cited by: 9
Author(s): Meina Huang, Yang Li, Ning Jiang, Quanhui Dai, Li R, Zhaocai Zhou, Bing Zhao, Xinhua Lin
Software Mentions: 2
Published: over 3 years ago

10.1038/s41385-021-00375-w

Epithelial production of elastase is increased in inflammatory bowel disease and causes mucosal inflammation
Cited by: 17
Author(s): Jean-Paul Motta, Corinne Rolland, Anissa Edir, Ana-Carolina Florence, David Sagnat, Chrystelle Bonnart, Perrine Rousset, Laura Guiraud, Muriel Quaranta-Nicaise, Emmanuel Mas, Delphine Bonnet, Elena F. Verdú, Derek M. McKay, Étienne Buscail, Laurent Alric, Nathalie Vergnolle, Céline Deraison
Software Mentions: 2
Published: over 3 years ago

10.1186/s13567-016-0333-1

The microbiome associated with equine periodontitis and oral health
Cited by: 56
Author(s): Rebekah C. Kennedy, David F. Lappin, Padraic Dixon, Mark J. Buijs, Egija Zaura, Wim Crielaard, Lindsay E. O’Donnell, David Bennett, Bernd W. Brandt, Marcello P. Riggio
Software Mentions: 2
Published: over 8 years ago

10.1186/s13567-019-0701-8

Influence of pig gut microbiota on Mycoplasma hyopneumoniae susceptibility
Cited by: 12
Author(s): Meera Surendran Nair, Tyson P. Eucker, Brian Martinson, Axel Neubauer, Joseph Victoria, Bryon A. Nicholson, Maria Pieters
Software Mentions: 2
Published: about 5 years ago

10.1186/s13567-020-00769-x

Analysis of the lung microbiota in dogs with Bordetella bronchiseptica infection and correlation with culture and quantitative polymerase chain reaction
Cited by: 6
Author(s): Aline Fastrès, Morgane A. Canonne, Bernard Taminiau, Frédéric Billen, Mutien-Marie Garigliany, Georges Daube, Cécile Clercx
Software Mentions: 2
Published: over 4 years ago

10.3390/vetsci8060096

Different Non-Structural Carbohydrates/Crude Proteins (NCS/CP) Ratios in Diet Shape the Gastrointestinal Microbiota of Water Buffalo
Cited by: 1
Author(s): Rubina Paradiso, Giorgia Borriello, Sergio Bolletti Censi, Angela Salzano, Roberta Cimmino, Giorgio Galiero, Giovanna Fusco, Esterina De Carlo, Giuseppe Campanile
Software Mentions: 2
Published: over 3 years ago

10.3390/v13081567

Gut Microbiome Changes Associated with Epithelial Barrier Damage and Systemic Inflammation during Antiretroviral Therapy of Chronic SIV Infection
Cited by: 8
Author(s): Ceylan Tanes, Edith Walker, Nadia Slisarenko, Giovanni L. Gerrets, Brooke Grasperge, Xuebin Qin, S. Michal Jazwinski, Frederic D. Bushman, Kyle Bittinger, Namita Rout
Software Mentions: 2
Published: over 3 years ago

10.1007/s11274-020-2806-7

Preparation and characterization of site-specific dechlorinating microbial inocula capable of complete dechlorination enriched in anaerobic microcosms amended with clay mineral
Cited by: 4
Author(s): Zsuzsanna Nagymáté, Laura Jurecska, Csaba Romsics, Ferenc Tóth, Viktória Bódai, Éva Mészáros, Attila Szabó, Balázs Erdélyi, Károly Màrialigeti
Software Mentions: 2
Published: almost 5 years ago

10.3897/zookeys.611.9608

Faunistic patterns of leaf beetles (Coleoptera, Chrysomelidae) within elevational and temporal gradients in Sierra de San Carlos, Mexico
Cited by: 14
Author(s): Uriel Jeshua Sánchez-Reyes, Santiago Niño-Maldonado, Ludivina Barrientos‐Lozano, Shawn M. Clark, Robert W. Jones
Software Mentions: 2
Published: over 8 years ago

10.1186/s13071-019-3402-2

The composition and abundance of bacterial communities residing in the gut of Glossina palpalis palpalis captured in two sites of southern Cameroon
Cited by: 17
Author(s): Jean Marc Tsagmo Ngoune, Julie Réveillaud, Guilhem Sempéré, Flobert Njiokou, Tresor Tito Tanekou Melachio, Luc Abate, Majoline T. Tchioffo, Anne Geiger
Software Mentions: 2
Published: over 5 years ago

10.1186/s13071-016-1495-4

Ecological characterization and molecular differentiation of Culex pipiens complex taxa and Culex torrentium in eastern Austria
Cited by: 49
Author(s): Carina Zittra, Eva Flechl, Michael Kothmayer, Simon Vitecek, Heidemarie Rossiter, Thomas Zechmeister, Hans‐Peter Fuehrer
Software Mentions: 2
Published: over 8 years ago

10.1186/s13071-019-3510-z

Effect of intestinal tapeworms on the gut microbiota of the common carp, Cyprinus carpio
Cited by: 19
Author(s): Pei P. Fu, Fan Xiong, Wen W. Feng, Hong Zou, Shan Wu, Ming Li, Gui T. Wang, Wen X. Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s13071-019-3636-z

Microbiota and gut ultrastructure of Anisakis pegreffii isolated from stranded cetaceans in the Adriatic Sea
Cited by: 6
Author(s): Ivona Mladineo, Jerko Hrabar, Anamarija Vrbatović, Sanja Duvnjak, Tomislav Gomerčić, Martina Đuras
Software Mentions: 2
Published: over 5 years ago

10.1186/s13071-016-1926-2

Triatomine bugs, their microbiota and Trypanosoma cruzi: asymmetric responses of bacteria to an infected blood meal
Cited by: 44
Author(s): Sebastián Pérez Díaz, Bianca Villavicencio, Nathália Cordeiro Correia, Jane Costa, Karen Luisa Haag
Software Mentions: 2
Published: about 8 years ago

10.1186/s13071-021-04580-1

Dissection of the gut microbiota in mothers and children with chronic Trichuris trichiura infection in Pemba Island, Tanzania
Cited by: 12
Author(s): Hongliang Chen, Matteo Mozzicafreddo, Elisa Pierella, Vanessa Carletti, Angela Piersanti, Said M. Ali, M. Shaali, Chunfeng Wang, Cristina Miceli
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13071-019-3724-0

Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites
Cited by: 21
Author(s): Alexandra L. DeCandia, Kennedy N. Leverett, Bridgett M. vonHoldt
Software Mentions: 2
Published: about 5 years ago

10.3390/pathogens10050593

Dysregulation of Glycerophosphocholines in the Cutaneous Lesion Caused by Leishmania major in Experimental Murine Models
Cited by: 4
Author(s): Adwaita R. Parab, Diane Thomas, Sharon Lostracco-Johnson, Jair L. Siqueira-Neto, James H. McKerrow, Pieter C. Dorrestein, Laura-Isobel McCall
Software Mentions: 2
Published: over 3 years ago

10.3390/pathogens10081068

Comparison of Chicken Cecal Microbiota after Metaphylactic Treatment or Following Administration of Feed Additives in a Broiler Farm with Enterococcal Spondylitis History
Cited by: 3
Author(s): Julia Hankel, Björn Bodmann, Matthias Todte, Eric Galvez, Till Strowig, Dimitri Radko, Ali Antakli, Christian Visscher
Software Mentions: 2
Published: over 3 years ago

10.3390/pathogens9060440

Cartography of Free-Living Amoebae in Soil in Guadeloupe (French West Indies) Using DNA Metabarcoding
Cited by: 5
Author(s): Yann Reynaud, Célia Ducat, Antoine Talarmin, Isabel Marcelino
Software Mentions: 2
Published: over 4 years ago

10.3390/pathogens10060761

Profiling of Intestinal Microbiota in Patients Infected with Respiratory Influenza A and B Viruses
Cited by: 10
Author(s): Hebah A. Al-Khatib, Shilu Mathew, Maria K. Smatti, Nahla O. Eltai, Sameer A. Pathan, Asmaa A. Al Thani, Peter Coyle, Muna Al Maslamani, Hadi M. Yassine
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.6854

Comparison of microbial community structures in soils with woody organic amendments and soils with traditional local organic amendments in Ningxia of Northern China
Cited by: 7
Author(s): Zhigang Li, Kaiyang Qiu, Rebecca L. Schneider, Stephen J. Morreale, Yi Xie
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.7588

Long-term studies reveal major environmental factors driving zooplankton dynamics and periodicities in the Black Sea coastal zooplankton
Cited by: 2
Author(s): Alexander L. Vereshchaka, L. L. Anokhina, T. A. Lukasheva, Anastasia A. Lunina
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.8903

Palustrine forested wetland vegetation communities change across an elevation gradient, Washington State, USA
Cited by: 2
Author(s): Nate Hough‐Snee
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.10080

Spatial benthic community analysis of shallow coral reefs to support coastal management in Culebra Island, Puerto Rico
Cited by: 3
Author(s): Nicolás X. Gómez-Andújar, Edwin A. Hernández-Delgado
Software Mentions: 2
Published: about 4 years ago

10.7717/peerj.4060

Evaluating the role of wild songbirds or rodents in spreading avian influenza virus across an agricultural landscape
Cited by: 5
Author(s): Derek D. Houston, Shahan Azeem, Coady W. Lundy, Yuko Sato, Baoqing Guo, Julie A. Blanchong, Phillip C. Gauger, David R. Marks, Kyoung‐Jin Yoon, James S. Adelman
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.1434

Dynamics in benthic community composition and influencing factors in an upwelling-exposed coral reef on the Pacific coast of Costa Rica
Cited by: 11
Author(s): Ines Stuhldreier, Celeste Sánchez-Noguera, Florian Roth, Carlos Jiménez, Tim Rixen, Jorge Cortés, Christian Wild
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.11576

Dumpster diving for diatom plastid 16S rRNA genes
Cited by: 2
Author(s): Krista L Bonfantine, Stacey M. Trevathan‐Tackett, Ty G. Matthews, Ana Neckovic, Han Ming Gan
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.2538

Deer herbivory reduces web-building spider abundance by simplifying forest vegetation structure
Cited by: 17
Author(s): Elizabeth J Roberson, Michael J. Chips, Walter P. Carson, Thomas P. Rooney
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.7040

Composition and dynamics of the bacterial communities present in the post-slaughter environment of farmed Atlantic salmon (Salmo salarL.) and correlations to gelatin degrading activity
Cited by: 2
Author(s): Ása Jacobsen, Svein‐Ole Mikalsen, Hóraldur Joensen, Jonhard Eysturskarð
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.4898

Do latitudinal gradients exist in New Zealand stream invertebrate metacommunities?
Cited by: 8
Author(s): Jonathan D. Tonkin, Russell G. Death, Timo Muotka, Anna Astorga, David A. Lytle
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.9927

Connectivity of bacterial assemblages along the Loa River in the Atacama Desert, Chile
Cited by: 7
Author(s): Ana Zárate, Cristina Dorador, Rubén Araya, Mariela Guajardo, July Z. Florez, Gonzalo Icaza, Diego Cornejo, Jorge Valdés
Software Mentions: 2
Published: about 4 years ago

10.7717/peerj.8701

Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya
Cited by: 33
Author(s): Joseph Gichuhi, Sevgan Subramanian, Fathiya M. Khamis, J. van den Berg, Hannalene du Plessis, Sunday Ekesi, Jeremy K. Herren
Software Mentions: 2
Published: over 4 years ago

10.3390/plants9080985

Distribution and Characterization of Deep Rhodolith Beds off the Campania coast (SW Italy, Mediterranean Sea)
Cited by: 16
Author(s): Francesco Rendina, Sara Kaleb, Annalisa Caragnano, Federica Ferrigno, Luca Appolloni, Luigia Donnarumma, Gìovanni Fulvio Russo, Roberto Sandulli, Valentina Roviello, Annalisa Falace
Software Mentions: 2
Published: over 4 years ago

10.1007/s11104-017-3324-8

Chemical changes in organic matter after fungal colonization in a nitrogen fertilized and unfertilized Norway spruce forest
Cited by: 10
Author(s): César Nicolás, Juan Pablo Almeida, Magnus Ellström, Adam Bahr, Sharon E. Bone, Nicholas P. Rosenstock, John R. Bargar, Anders Tunlid, Per Persson, Håkan Wallander
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pbio.3001182

Glyphosate inhibits melanization and increases susceptibility to infection in insects
Cited by: 32
Author(s): Daniel F. Q. Smith, Emma Camacho, Raviraj Thakur, Alexander J. Barron, Yuemei Dong, George Dimopoulos, Nichole A. Broderick, Arturo Casadevall
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pbio.2006842

Gut microbiota diversity across ethnicities in the United States
Cited by: 196
Author(s): Andrew Brooks, Sambhawa Priya, Ran Blekhman, Seth R. Bordenstein
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1006102

Correcting for batch effects in case-control microbiome studies
Cited by: 99
Author(s): Sean M. Gibbons, Claire Duvallet, Eric J. Alm
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1007943

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events
Cited by: 92
Author(s): Tina E. Berry, Benjamin J. Saunders, Megan L. Coghlan, Michael Stat, Simon Jarman, Anthony J. Richardson, Claire Davies, Oliver Berry, Euan S. Harvey, Michael Bunce
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pntd.0006739

Bacterial community composition in the salivary glands of triatomines (Hemiptera: Reduviidae)
Cited by: 15
Author(s): Michele S. Lima, Marinella Silva Laport, Elias Seixas Lorosa, José Jurberg, Kátia Regina Netto dos Santos, Mário Alberto Cardoso da Silva Neto, Caio Tavora Coelho da Costa Rachid, Geórgia C. Atella
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pntd.0007697

Systems analysis-based assessment of post-treatment adverse events in lymphatic filariasis
Cited by: 11
Author(s): Britt Andersen, Bruce A. Rosa, Jonah Kupritz, Aboulaye Meïté, Traye Serge, Marla I. Hertz, Kurt C. Curtis, Christopher L. King, Makedonka Mitreva, Peter Fischer, Gary J. Weil
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pntd.0007672

Opportunistic pathogens and large microbial diversity detected in source-to-distribution drinking water of three remote communities in Northern Australia
Cited by: 10
Author(s): Mirjam Kaestli, Michelle O’Donnell, Alea Rose, Jessica R. Webb, Mark Mayo, Bart J. Currie, Karen S. Gibb
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0159402

Reappraisal of the Trophic Ecology of One of the World’s Most Threatened Spheniscids, the African Penguin
Cited by: 17
Author(s): Maëlle Connan, G. J. G. Hofmeyr, Pierre A. Pistorius
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0177374

Drivers of abundance and spatial distribution of reef-associated sharks in an isolated atoll reef system
Cited by: 21
Author(s): David Tickler, Tom B. Letessier, Heather J. Koldewey, Jessica J. Meeuwig
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0253213

Deep-sea biodiversity at the extremes of the Salas y Gómez and Nazca ridges with implications for conservation
Cited by: 9
Author(s): Alan M. Friedlander, Whitney Goodell, Jonatha Giddens, Erin E. Easton, Daniel Wagner
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0247392

The porcine corneal surface bacterial microbiome: A distinctive niche within the ocular surface
Cited by: 6
Author(s): Marina L. Leis, Gabriela Morais Madruga, Matheus O. Costa
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0182205

A benign helminth alters the host immune system and the gut microbiota in a rat model system
Cited by: 30
Author(s): Laura Wegener Parfrey, Milan Jirků, Radek Šíma, Marie Jalovecká, Bohumil Sak, Karina Grigore, Kateřina Jirků-Pomajbíková
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0107460

Phylogenetic and Metagenomic Analyses of Substrate-Dependent Bacterial Temporal Dynamics in Microbial Fuel Cells
Cited by: 16
Author(s): Husen Zhang, Xi Chen, Daniel T. Braithwaite, Zhen He
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0142097

Lung Microbiota Changes Associated with Chronic Pseudomonas aeruginosa Lung Infection and the Impact of Intravenous Colistimethate Sodium
Cited by: 10
Author(s): David Collie, Laura Glendinning, John R. W. Govan, Steven H. Wright, Elisabeth M. Thornton, Peter Tennant, C. Doherty, Gerry McLachlan
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0154632

Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish
Cited by: 105
Author(s): Christopher A. Gaulke, Carrie L. Barton, Sarah Proffitt, Robert L. Tanguay, Thomas J. Sharpton
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0118566

Deep Sequencing and Ecological Characterization of Gut Microbial Communities of Diverse Bumble Bee Species
Cited by: 20
Author(s): Haw Chuan Lim, Chia‐Ching Chu, Manfredo J. Seufferheld, Sydney A. Cameron
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0052694

Prey Distribution, Physical Habitat Features, and Guild Traits Interact to Produce Contrasting Shorebird Assemblages among Foraging Patches
Cited by: 23
Author(s): Beth M. VanDusen, Stephen R. Fegley, Charles H. Peterson
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0212355

Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California
Cited by: 42
Author(s): Sabah Ul-Hasan, Robert M. Bowers, Andrea Figueroa-Montiel, Alexei F. Licea-Navarro, J. Michael Beman, Tanja Woyke, Clarissa J. Nobile
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0182017

Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination
Cited by: 34
Author(s): William Pietro-Souza, Ivani Souza Mello, Suzana Junges Vendruscullo, Gilvan Ferreira da Silva, Cátia Nunes da Cunha, James F. White, Marcos Antônio Soares
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0080365

Augmentative Biocontrol in Natural Marine Habitats: Persistence, Spread and Non-Target Effects of the Sea Urchin Evechinus chloroticus
Cited by: 20
Author(s): Javier Atalah, Grant A. Hopkins, Barrie M. Forrest
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0143838

Comparative Allometric Growth of the Mimetic Ephippid Reef Fishes Chaetodipterus faber and Platax orbicularis
Cited by: 5
Author(s): Breno Barros, Yoichi Sakai, Pedro Henrique Cipresso Pereira, Eric Gasset, Vincent Buchet, Moana Maamaatuaiahutapu, Jonathan Stuart Ready, Yrlan Oliveira, Tommaso Giarrizzo, Marcelo Vallinoto
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0162470

Decrease of Population Divergence in Eurasian Perch (Perca fluviatilis) in Browning Waters: Role of Fatty Acids and Foraging Efficiency
Cited by: 12
Author(s): Kristin Scharnweber, Ursula Strandberg, Konrad Karlsson, Peter Eklöv
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0102130

Characterization of the Bacterial Communities of Life Stages of Free Living Lone Star Ticks (Amblyomma americanum)
Cited by: 77
Author(s): Amanda Jo Williams-Newkirk, Lori A. Rowe, Tonya Mixson‐Hayden, Gregory A. Dasch
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0207940

Seasonal changes in diet and chemical defense in the Climbing Mantella frog (Mantella laevigata)
Cited by: 16
Author(s): Nora A. Moskowitz, Alexandre B. Roland, Eva K. Fischer, Ndimbintsoa Ranaivorazo, Charles Vidoudez, Marianne T. Aguilar, Sophia Caldera, Jacqueline Chea, Miruna G. Cristus, Jett Crowdis, Bluyé DeMessie, Caroline R. DesJardins-Park, Audrey H. Effenberger, Felipe N. Flores, M. A. Giles, Emma Y. He, Nike S. Izmaylov, ChangWon C. Lee, Nicholas A. Pagel, Krystal K Phu, Leah U. Rosen, Danielle A. Seda, Yong Shen, Santiago Vargas, Andrew W. Murray, Eden Abebe, Sunia A. Trauger, David A. Donoso, Miguel Vences, Lauren A. O’Connell
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0241732

Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types
Cited by: 7
Author(s): Michael Edward C Abundo, John M. Ngunjiri, Kara Taylor, Hana Ji, Amir Ghorbani, Mahesh Kc, Bonnie Weber, Timothy J. Johnson, Chang-Won Lee
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0224641

Effects of initial microbial biomass abundance on respiration during pine litter decomposition
Cited by: 7
Author(s): Michaeline B. N. Albright, Andreas Runde, Deanna Lopez, Jason Gans, Sanna Sevanto, Dominic Woolf, John Dunbar
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0223067

Prokaryotic and eukaryotic microbiomes associated with blooms of the ichthyotoxic dinoflagellate Cochlodinium (Margalefidinium) polykrikoides in New York, USA, estuaries
Cited by: 13
Author(s): Theresa K. Hattenrath-Lehmann, Jennifer G. Jankowiak, Florian Koch, Christopher J. Gobler
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0214316

Dynamic and diverse amphibian assemblages: Can we differentiate natural processes from human induced changes?
Cited by: 5
Author(s): Nathália G. S. Lima, Ubirajara Oliveira, Rafael Cerqueira Castro de Souza, Paula Cabral Eterovick
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0142040

Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming
Cited by: 5
Author(s): Javiera N. Benavente, Lisa W. Seeb, James E. Seeb, Iván Arisméndi, Cristián E. Hernández, Gonzalo Gajardo, Ricardo Galleguillos, María I. Cádiz, Selim Musleh, Daniel Gómez-Uchida
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0142825

Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time
Cited by: 62
Author(s): Yana Emmy Hoy, Elisabeth M. Bik, Trevor D. Lawley, Susan Holmes, Denise M. Monack, Julie A. Theriot, David A. Relman
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0052448

Growth Attenuation with Developmental Schedule Progression in Embryos and Early Larvae of Sterechinus neumayeri Raised under Elevated CO2
Cited by: 39
Author(s): Pauline C. Yu, Mary A. Sewell, Paul G. Matson, Emily B. Rivest, Lydia Kapsenberg, Gretchen E. Hofmann
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0202278

Subgingival microbiome of rheumatoid arthritis patients in relation to their disease status and periodontal health
Cited by: 40
Author(s): Kathrin Beyer, Egija Zaura, Bernd W. Brandt, M.J. Buijs, Johan G. Brun, Wim Crielaard, Anne Isine Bolstad
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0115798

Water Content Differences Have Stronger Effects than Plant Functional Groups on Soil Bacteria in a Steppe Ecosystem
Cited by: 10
Author(s): Ximei Zhang, Albert Barberán, Xinghua Zhu, Guangming Zhang, Xingguo Han
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0245995

Rebamipide ameliorates indomethacin-induced small intestinal damage and proton pump inhibitor-induced exacerbation of this damage by modulation of small intestinal microbiota
Cited by: 8
Author(s): Tetsuya Tanigawa, Toshio Watanabe, Akira Higashimori, Sunao Shimada, Hiroyuki Kitamura, Takuya Kuzumoto, Yuji Nadatani, Koji Otani, Shusei Fukunaga, Shuhei Hosomi, Fumio Tanaka, Noriko Kamata, Yasuaki Nagami, Koichi Taira, Masatsugu Shiba, Wataru Suda, Masahira Hattori, Yasuhiro Fujiwara
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0208327

Bacterial microbiome of the chigger mite Leptotrombidium imphalum varies by life stage and infection with the scrub typhus pathogen Orientia tsutsugamushi
Cited by: 13
Author(s): Loganathan Ponnusamy, Alexandra C Willcox, R. Michael Roe, Silas A. Davidson, Piyada Linsuwanon, Anthony L. Schuster, Allen L. Richards, Steven R. Meshnick, Charles S. Apperson
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0251499

Trophic ecology of yellowtail rockfish (Sebastes flavidus) during a marine heat wave off central California, USA
Cited by: 3
Author(s): Jennifer A. Chiu, Joseph J. Bizzarro, Richard M. Starr
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0136157

Impacts of Rotational Grazing on Soil Carbon in Native Grass-Based Pastures in Southern Australia
Cited by: 41
Author(s): Jonathan Sanderman, Reseigh Jodie, Michael Wurst, Young Mary-Anne, Jenet Austin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0178559

Distribution and diversity of aquatic macroinvertebrate assemblages in a semi-arid region earmarked for shale gas exploration (Eastern Cape Karoo, South Africa)
Cited by: 28
Author(s): Annah Mabidi, Matthew S. Bird, Renzo Perissinotto
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0121272

Impacts and Recovery from Severe Tropical Cyclone Yasi on the Great Barrier Reef
Cited by: 61
Author(s): Roger Beeden, Jeffrey Maynard, Marji Puotinen, Paul Marshall, Dryden Jen, Jeremy Goldberg, Gareth J. Williams
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0102498

Sediment and Turbidity Associated with Offshore Dredging Increase Coral Disease Prevalence on Nearby Reefs
Cited by: 166
Author(s): F. Joseph Pollock, Joleah B. Lamb, Stuart N. Field, Scott F. Heron, Britta Schaffelke, George Shedrawi, David G. Bourne, Bette L. Willis
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0233878

Different wheat cultivars exhibit variable responses to inoculation with arbuscular mycorrhizal fungi from organic and conventional farms
Cited by: 27
Author(s): David García de León, Tanel Vahter, Martin Zobel, Mati Koppel, Liina Edesi, John Davison, Saleh Al‐Quraishy, Wael N. Hozzein, Mari Moora, Jane Oja, Martti Vasar, Maarja Öpik
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0197753

Oyster aquaculture impacts Zostera marina epibiont community composition in Akkeshi-ko estuary, Japan
Cited by: 10
Author(s): Charles S. Smith, Minako Ito, Mizuho Namba, Masahiro Nakaoka
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0245936

A DNA metabarcoding approach for recovering plankton communities from archived samples fixed in formalin
Cited by: 9
Author(s): Takuhei Shiozaki, Fumihiro Itoh, Yuu Hirose, Jonaotaro Onodera, Akira Kuwata, Naomi Harada
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0106520

Seasonality Affects Macroalgal Community Response to Increases in pCO2
Cited by: 53
Author(s): Cecilia Baggini, Maria Salomidi, Emanuela Voutsinas, Laura Bray, Ε. Κρασακοπούλου, Jason M. Hall-Spencer
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0078761

Additive Partitioning of Coral Reef Fish Diversity across Hierarchical Spatial Scales throughout the Caribbean
Cited by: 20
Author(s): Vanessa Francisco, Jesús Ernesto Arias‐González
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0096363

Spatial Segregation and Aggregation of Ectomycorrhizal and Root-Endophytic Fungi in the Seedlings of Two Quercus Species
Cited by: 28
Author(s): Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe, Amane Hidaka, Kohmei Kadowaki, Hirokazu Toju
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0168261

Recovery of Coastal Fauna after the 2011 Tsunami in Japan as Determined by Bimonthly Underwater Visual Censuses Conducted over Five Years
Cited by: 17
Author(s): Reiji Masuda, Makoto Hatakeyama, Katsuhide Yokoyama, Masaru Tanaka
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0149253

The Challenge of Planning Conservation Strategies in Threatened Seascapes: Understanding the Role of Fine Scale Assessments of Community Response to Cumulative Human Pressures
Cited by: 24
Author(s): Giuseppe Guarnieri, Stanislao Bevilacqua, Francesco De Leo, Giulio Farella, Anna Maffia, Antonio Terlizzi, Simonetta Fraschetti
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0193011

Ex situ cultivation protocol for Cystoseira amentacea var. stricta (Fucales, Phaeophyceae) from a restoration perspective
Cited by: 42
Author(s): Annalisa Falace, Sara Kaleb, Gina De La Fuente, Valentina Asnaghi, Mariachiara Chiantore
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0214582

Hepatic glycogen storage diseases are associated to microbial dysbiosis
Cited by: 16
Author(s): Karina Colonetti, Bruna Bento dos Santos, Tatiéle Nalin, Carolina Fischinger Moura de Souza, Eric W. Triplett, Priscila Caroline Thiago Dobbler, Ida Vanessa Döederlein Schwartz, Luiz Fernando Würdig Roesch
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0243848

Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
Cited by: 13
Author(s): Mónica Oyuela Aguilar, Alex Gobbi, Patrick Browne, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen, Liliana Semorile, Mariano Pistorio
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0059807

Aridity Modulates N Availability in Arid and Semiarid Mediterranean Grasslands
Cited by: 40
Author(s): Manuel Delgado‐Baquerizo, Fernando T. Maestre, Antonio Gallardo, José L. Quero, Victoria Ochoa, Miguel García‐Gómez, Cristina Escolar, Pablo García‐Palacios, Miguel Berdugo, Enrique Valencia, Beatriz Gozalo, Zouhaier Noumi, Mchich Derak, Matthew D. Wallenstein
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0241338

Baseline gut microbiome composition predicts metformin therapy short-term efficacy in newly diagnosed type 2 diabetes patients
Cited by: 27
Author(s): Ilze Elbere, Ivars Silamiķelis, Ilze Izabella Dindune, Ineta Kalniņa, Monta Ustinova, Linda Zaharenko, Laila Silamiķele, Vita Rovīte, Dita Gudrā, Ilze Konrāde, Jeļizaveta Sokolovska, Valdis Pīrāgs, Jānis Kloviņš
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0036866

A Proposed Taxonomy of Anaerobic Fungi (Class Neocallimastigomycetes) Suitable for Large-Scale Sequence-Based Community Structure Analysis
Cited by: 95
Author(s): Sandra Kittelmann, Graham E. Naylor, J. Koolaard, Peter H. Janssen
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0211328

SLC39A8 missense variant is associated with Crohn's disease but does not have a major impact on gut microbiome composition in healthy subjects
Cited by: 9
Author(s): Valerie Collij, Floris Imhann, Arnau Vich Vila, Jingyuan Fu, Gerard Dijkstra, Eleonora A. M. Festen, Michiel Voskuil, Mark J. Daly, Ramnik J. Xavier, Cisca Wijmenga, Alexandra Zhernakova, Rinse K. Weersma
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0018606

Aspects of Benthic Decapod Diversity and Distribution from Rocky Nearshore Habitat at Geographically Widely Dispersed Sites
Cited by: 13
Author(s): Gerhard Pohle, Katrin Iken, K.R. Clarke, Thomas J. Trott, Brenda Konar, Juan J. Cruz‐Motta, Melisa C. Wong, Lisandro Benedetti‐Cecchi, Angela Mead, Patricia Miloslavich, Nova Mieszkowska, Rebecca Milne, Laura Tamburello, Ann L. Knowlton, Edward Kimani, Yoshihisa Shirayama
Software Mentions: 2
Published: over 13 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292