10.1128/mSystems.00775-21

Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis
Cited by: 3
Author(s): Yaowen Chen, Pu Liao, Runyan Liu, Shuofeng Hu, Zhen He, Guohua Dong, Chao Feng, Sijing An, Xiaomin Ying
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSystems.00902-21

SubTap, a Versatile 3D Printed Platform for Eavesdropping on Extracellular Interactions
Cited by: 1
Author(s): Caroline Birer-Williams, Rosalie K. Chu, Christopher R. Anderton, Erik S. Wright
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41396-018-0334-3

Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil
Cited by: 34
Author(s): David J. Levy‐Booth, Ian Giesbrecht, Colleen T. E. Kellogg, Thierry J. Heger, D. V. D’Amore, Patrick J. Keeling, Steven J. Hallam, William W. Mohn
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-020-00816-7

Microbial ecology of the newly discovered serpentinite-hosted Old City hydrothermal field (southwest Indian ridge)
Cited by: 23
Author(s): Aurélien Lecoeuvre, Bénédicte Ménèz, Mathilde Cannat, Valérie Chavagnac, Emmanuelle Gérard
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41396-018-0323-6

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
Cited by: 229
Author(s): Phillipe M. Rosado, D. L. Leite, Gabriela Duarte, Ricardo M. Chaloub, Guillaume Jospin, Ulisses Nunes da Rocha, J. Saraiva, Francisco Dini‐Andreote, Jonathan A. Eisen, David G. Bourne, Raquel S. Peixoto
Software Mentions: 2
Published: over 7 years ago

10.1038/ismej.2017.1

Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire
Cited by: 90
Author(s): Sang Hoon Lee, Jackson W Sorensen, Keara L. Grady, Tammy C Tobin, Ashley Shade
Software Mentions: 2
Published: over 9 years ago

10.1038/ismej.2016.139

A family of interaction-adjusted indices of community similarity
Cited by: 36
Author(s): Thomas Sebastian Benedikt Schmidt, João F. Matias Rodrigues, Christian von Mering
Software Mentions: 2
Published: over 9 years ago

10.1038/s41396-020-0646-y

Host-microbiota interaction helps to explain the bottom-up effects of climate change on a small rodent species
Cited by: 26
Author(s): Guoliang Li, Baofa Yin, Jing Li, Jun Wang, Wanhong Wei, Daniel I. Bolnick, Xiaofeng Wan, Baoli Zhu, Zhibin Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/ismej.2017.170

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline
Cited by: 65
Author(s): Sandra Denman, James Doonan, Emma Ransom-Jones, Martin Broberg, Sarah J. Plummer, Susan Kirk, Kelly Scarlett, Andrew R Griffiths, Maciej Kaczmarek, Jack Forster, Andrew Peace, Peter N. Golyshin, Francis Hassard, Nigel L. Brown, John Kenny, James E. McDonald
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41396-021-00978-y

Deep-sea shipwrecks represent island-like ecosystems for marine microbiomes
Cited by: 14
Author(s): Leila J. Hamdan, Justyna J. Hampel, Rachel D. Moseley, Rachel L. Mugge, Anirban Ray, Jennifer L. Salerno, Melanie Damour
Software Mentions: 2
Published: over 5 years ago

10.1038/s41396-019-0375-2

Metabolic regulation of the maize rhizobiome by benzoxazinoids
Cited by: 186
Author(s): T. E. Anne Cotton, Pierre Pétriacq, Duncan D. Cameron, Moaed Al Meselmani, Roland E. Schwarzenbacher, Stephen A. Rolfe, Jurriaan Ton
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-018-0174-1

Gut bacterial and fungal communities of the domesticated silkworm (Bombyx mori) and wild mulberry-feeding relatives
Cited by: 156
Author(s): Bosheng Chen, Kaiqian Du, Chao Sun, Vimalanathan Arunprasanna, Xiaoyu Liang, Yong Li, Baohong Wang, Xin-Jiang Lu, Lanjuan Li, Yongqi Shao
Software Mentions: 2
Published: about 8 years ago

10.1038/s41396-018-0313-8

Linking bacterial community composition to soil salinity along environmental gradients
Cited by: 236
Author(s): Kristin Rath, Noah Fierer, Daniel V. Murphy, Johannes Rousk
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms21217863

Impact of a Model Used to Simulate Chronic Socio-Environmental Stressors Encountered during Spaceflight on Murine Intestinal Microbiota
Cited by: 8
Author(s): Corentine Alauzet, Lisiane Cunat, Maxime Wack, Laurence Lanfumey, Christine Legrand-Frossi, Alain Lozniewski, Nelly Agrinier, Catherine Cailliez‐Grimal, Jean-Pol Frippiat
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21249509

Comprehensive Analysis Reveals Novel Interactions between Circulating MicroRNAs and Gut Microbiota Composition in Human Obesity
Cited by: 20
Author(s): Taís Silveira Assmann, Amelia Marti, José Ignacio Riezu-Boj, Fermı́n I. Milagro, J. Alfredo Martínéz
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21249735

Gastric Adenocarcinomas and Signet-Ring Cell Carcinoma: Unraveling Gastric Cancer Complexity through Microbiome Analysis—Deepening Heterogeneity for a Personalized Therapy
Cited by: 23
Author(s): Gloria Ravegnini, Bruno Fosso, Viola Di Saverio, Giulia Sammarini, Federica Zanotti, Giulio Rossi, M. Ricci, Federica D’Amico, Giorgia Valori, Antonella Ioli, Silvia Turroni, Patrizia Brigidi, Patrizia Hrelia, Sabrina Angelini
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22041649

Gut Microbiota Profile in Children with IgE-Mediated Cow’s Milk Allergy and Cow’s Milk Sensitization and Probiotic Intestinal Persistence Evaluation
Cited by: 10
Author(s): Maurizio Mennini, Sofia Reddel, Federica Del Chierico, Simone Gardini, Andrea Quagliariello, Pamela Vernocchi, Rocco Valluzzi, Vincenzo Fierro, Carla Riccardi, Tania Napolitano, Alessandro Fiocchi, Lorenza Putignani
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22073343

Lantibiotics Produced by Oral Inhabitants as a Trigger for Dysbiosis of Human Intestinal Microbiota
Cited by: 5
Author(s): Hideo Yonezawa, Mizuho Motegi, Atsushi Oishi, Fuhito Hojo, Seiya Higashi, Eriko Nozaki, Koichiro Oka, Motomichi Takahashi, Takako Osaki, Shigeru Kamiya
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22179626

Increase in Akkermansiaceae in Gut Microbiota of Prostate Cancer-Bearing Mice
Cited by: 12
Author(s): Pin-Yu Huang, Yu Yang, Chun I. Wang, Pei Wen Hsiao, Hung‐Ting Chiang, Ting-Wen Chen
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms221910871

Characterization of the Human Eccrine Sweat Proteome—A Focus on the Biological Variability of Individual Sweat Protein Profiles
Cited by: 7
Author(s): Bastien Burat, A. Reynaerts, Dominique Baiwir, Maximilien Fléron, Gauthier Eppe, Teresinha Leal, Gabriel Mazzucchelli
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12974-021-02122-1

Neuroprotective effect of mitochondrial translocator protein ligand in a mouse model of tauopathy
Cited by: 21
Author(s): Lauren H. Fairley, Naruhiko Sahara, Ichio Aoki, Bin Ji, Tetsuya Suhara, Makoto Higuchi, Anna M. Barron
Software Mentions: 2
Published: over 5 years ago

10.1093/jn/nxz298

Provision of Lipid-Based Nutrient Supplements to Mothers During Pregnancy and 6 Months Postpartum and to Their Infants from 6 to 18 Months Promotes Infant Gut Microbiota Diversity at 18 Months of Age but Not Microbiota Maturation in a Rural Malawian Setting: Secondary Outcomes of a Randomized Trial
Cited by: 19
Author(s): Arox W Kamng’ona, R. T. Young, Charles D. Arnold, Noel Patson, Josh M Jorgensen, Emma Kortekangas, David Chaima, Chikondi Malamba, Ulla Ashorn, Yin Bun Cheung, Per Ashorn, Kenneth Maleta, Kathryn G. Dewey
Software Mentions: 2
Published: over 6 years ago

10.1080/20022727.2018.1551596

Microcosm biofilms cultured from different oral niches in periodontitis patients
Cited by: 35
Author(s): Fabian Cieplik, Egija Zaura, Bernd W. Brandt, Mark J. Buijs, Wolfgang Buchalla, Wim Crielaard, Marja L. Laine, Dongsheng Deng, R.A.M. Exterkate
Software Mentions: 2
Published: almost 8 years ago

10.1080/20002297.2019.1581513

Diversity and functional analysis of salivary microflora of Indian Antarctic expeditionaries
Cited by: 10
Author(s): Brij Bhushan, Anand Prakash Yadav, Shashi Bala Singh, Lilly Ganju
Software Mentions: 2
Published: over 7 years ago

10.1080/20002297.2018.1492316

Characterization of oral microbiota and acetaldehyde production
Cited by: 24
Author(s): Shigeyuki Yokoyama, Kenji Takeuchi, Yukie Shibata, Shinya Kageyama, Rie Matsumi, Toru Takeshita, Yoshihisa Yamashita
Software Mentions: 2
Published: over 8 years ago

10.1080/20002297.2018.1563409

Tongue coating microbiome data distinguish patients with pancreatic head cancer from healthy controls
Cited by: 83
Author(s): Haifeng Lü, Zhigang Ren, Ang Li, Shaoyan Xu, Hua Zhang, Jianwen Jiang, Jiezuan Yang, Qixia Luo, Kai Zhou, Shusen Zheng
Software Mentions: 2
Published: over 7 years ago

10.1080/20002297.2019.1663084

Composition and maternal origin of the neonatal oral cavity microbiota
Cited by: 25
Author(s): Heidi Tuominen, María Carmen Collado, Jaana Rautava, Stina Syrjänen, Samuli Rautava
Software Mentions: 2
Published: over 7 years ago

10.1016/j.isci.2021.102049

Establishment of murine gut microbiota in gnotobiotic mice
Cited by: 10
Author(s): Jocelyn M. Choo, Geraint B. Rogers
Software Mentions: 2
Published: over 5 years ago

10.1007/s13127-019-00416-0

The Caribbean enigma: the presence of unusual cryptic diversity in intertidal mites (Arachnida, Acari, Oribatida)
Cited by: 13
Author(s): Tobias Pfingstl, Julia Baumann, Andrea Lienhard
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12967-021-02882-7

The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing
Cited by: 29
Author(s): Wenli Zhou, Zhang De, Zhengpeng Li, Huiqing Jiang, Jingnan Li, Rongrong Ren, Xuefeng Gao, Jianfeng Li, Xin Wang, Weifeng Wang, Yunsheng Yang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12967-020-02642-z

Respiratory microbiome profiles differ by recent hospitalization and nursing home residence in patients on mechanical ventilation
Cited by: 6
Author(s): Min Gyung Baek, Seong Ji Woo, Nameun Kim, Chaeyun Baek, Sungho Won, Youngmi Kim, Jae Jun Lee, Hana Yi, Ji Young Hong
Software Mentions: 2
Published: over 5 years ago

10.1186/s12937-019-0475-x

The study evaluating the effect of probiotic supplementation on the mental status, inflammation, and intestinal barrier in major depressive disorder patients using gluten-free or gluten-containing diet (SANGUT study): a 12-week, randomized, double-blind, and placebo-controlled clinical study protocol
Cited by: 40
Author(s): Hanna Karakuła-Juchnowicz, Joanna Róg, Dariusz Juchnowicz, Igor Łoniewski, Karolina Skonieczna-Żydecka, Paweł Krukow, Małgorzata Futyma-Jędrzejewska, Mariusz Kaczmarczyk
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12986-020-00492-6

Treadmill exercise has minimal impact on obesogenic diet-related gut microbiome changes but alters adipose and hypothalamic gene expression in rats
Cited by: 8
Author(s): Sarah‐Jane Leigh, Nadeem O. Kaakoush, Rosa M. Escorihuela, R. Frederick Westbrook, Margaret J. Morris
Software Mentions: 2
Published: about 6 years ago

10.3390/nu13093290

Gut Microbiota Predicts Healthy Late-Life Aging in Male Mice
Cited by: 5
Author(s): Shanlin Ke, Sarah J. Mitchell, Michael R. MacArthur, Alice E. Kane, David Sinclair, Emily M. Venable, Katia S. Chadaideh, Rachel N. Carmody, Francine Grodstein, James R. Mitchell, Yangyu Liu
Software Mentions: 2
Published: almost 5 years ago

10.3390/nu11081853

Cooked Red Lentils Dose-Dependently Modulate the Colonic Microenvironment in Healthy C57Bl/6 Male Mice
Cited by: 12
Author(s): Daniela Gräf, Jennifer M. Monk, Dion Lepp, Wenqing Wu, Laurel McGillis, Kyle Roberton, Yolanda Brummer, Susan M. Tosh, Krista A. Power
Software Mentions: 2
Published: about 7 years ago

10.3390/nu12030732

α-Linolenic Acid-Rich Diet Influences Microbiota Composition and Villus Morphology of the Mouse Small Intestine
Cited by: 21
Author(s): Hristo Todorov, Bettina Kollar, Franziska Bayer, Inês Brandão, Amrit Mann, Julia Mohr, Giulia Pontarollo, Henning Formes, Roland H. Stauber, Jens M. Kittner, Kristina Endres, Bernhard Watzer, Wolfgang Andreas Nockher, Felix Sommer, Susanne Gerber, Carsten Reinhardt
Software Mentions: 2
Published: over 6 years ago

10.3390/nu13072269

Oral Ferric Maltol Does Not Adversely Affect the Intestinal Microbiome of Patients or Mice, but Ferrous Sulphate Does
Cited by: 9
Author(s): Awad Mahalhal, Alessandra Frau, Michael D. Burkitt, Umer Zeeshan Ijaz, Christopher A Lamb, John C. Mansfield, Stephen J. Lewis, D. Mark Pritchard, Chris Probert
Software Mentions: 2
Published: about 5 years ago

10.3390/nu13041141

Adherence to a Supplemented Mediterranean Diet Drives Changes in the Gut Microbiota of HIV-1-Infected Individuals
Cited by: 11
Author(s): Roque Pastor-Ibáñez, Juan Blanco-Heredia, Florencia Etcheverry, Sonsoles Sánchez-Palomino, Francisco Díez-Fuertes, Rosa Casas, María A Navarrete-Muñoz, Sara Castro‐Barquero, Claudia Lucero, Irene Fernández, Lorna Leal, José María Sánchez Benito, Marc Noguera-Julián, Roger Paredes, Norma Rallón, Ramón Estruch, David Torrents, Felipe García
Software Mentions: 2
Published: over 5 years ago

10.3390/nu11030664

Procyanidin—Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro
Cited by: 39
Author(s): Carine Le Bourvellec, Priscilla Bagano Vilas Boas, Pascale Lepercq, Sophie Comtet-Marre, Pauline Auffret, Philippe Ruiz, Raoul Bott, Cathérine M.G.C. Renard, Claire Dufour, Jean‐Marc Chatel, Pascale Mosoni
Software Mentions: 2
Published: over 7 years ago

10.3390/nu13030713

Multiple Selection Criteria for Probiotic Strains with High Potential for Obesity Management
Cited by: 16
Author(s): Jeanne Alard, Benoît Cudennec, Denise Boutillier, Véronique Peucelle, Amandine Descat, Raphael Decoin, Sarah Kuylle, Amin Jablaoui, Moez Rhimi, Isabelle Wolowczuk, Bruno Pot, Anne Tailleux, Emmanuelle Maguin, Sophie Holowacz, Corinne Grangette
Software Mentions: 2
Published: over 5 years ago

10.3390/nu12082193

Dynamics of Structural and Functional Changes in Gut Microbiota during Treatment with a Microalgal β-Glucan, Paramylon and the Impact on Gut Inflammation
Cited by: 12
Author(s): Harrison B. Taylor, Radhika Gudi, Robert R. Brown, Chenthamarakshan Vasu
Software Mentions: 2
Published: about 6 years ago

10.3390/nu13041066

Analysis of the Gut Mycobiome in Adult Patients with Type 1 and Type 2 Diabetes Using Next-Generation Sequencing (NGS) with Increased Sensitivity—Pilot Study
Cited by: 14
Author(s): Dominika Salamon, Agnieszka Sroka-Oleksiak, Artur Gurgul, Zbigniew Arent, Magdalena Szopa, Małgorzata Bulanda, Maciej Małecki, Tomasz Gosiewski
Software Mentions: 2
Published: over 5 years ago

10.3390/nu11030547

Human Gut Microbiome Response Induced by Fermented Dairy Product Intake in Healthy Volunteers
Cited by: 50
Author(s): Olesya Volokh, Natalia Klimenko, Yulia Berezhnaya, Alexander Tyakht, Polina Nesterova, Anna Popenko, Dmitry Alexeev
Software Mentions: 2
Published: over 7 years ago

10.3390/nu12020373

Dietary Synbiotic Supplementation Protects Barrier Integrity of Hepatocytes and Liver Sinusoidal Endothelium in a Mouse Model of Chronic-Binge Ethanol Exposure
Cited by: 16
Author(s): Yingchun Han, Bryan Glueck, David Shapiro, Aaron W. Miller, Sanjoy Roychowdhury, Gail Cresci
Software Mentions: 2
Published: over 6 years ago

10.3390/nu8110684

Dietary Gluten-Induced Gut Dysbiosis Is Accompanied by Selective Upregulation of microRNAs with Intestinal Tight Junction and Bacteria-Binding Motifs in Rhesus Macaque Model of Celiac Disease
Cited by: 46
Author(s): Mahesh Mohan, Cheryl-Emiliane T. Chow, Caitlin N. Ryan, Luisa Chan, Jason Dufour, Pyone P. Aye, James Blanchard, Charles P. Moehs, Karol Sestak
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2019.01579

The Seasonal Dynamics and the Influence of Human Activities on Campus Outdoor Microbial Communities
Cited by: 5
Author(s): Chaoyun Chen, Ruiqiao He, Zhangyu Cheng, Maozhen Han, Yuguo Zha, Pengshuo Yang, Qi Yao, Hao Zhou, Chunrong Zhong, Kang Ning
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms21072417

Transcriptomic Profiling in Fins of Atlantic Salmon Parasitized with Sea Lice: Evidence for an Early Imbalance Between Chalimus-Induced Immunomodulation and the Host’s Defense Response
Cited by: 18
Author(s): Navaneethaiyer Umasuthan, Xi Xue, Albert Caballero‐Solares, Surendra Kumar, JD Westcott, Z Chen, Stanko Škugor, Barbara F. Nowak, RG Taylor, ML Rise
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0222449

Sputum microbiota and inflammation at stable state and during exacerbations in a cohort of chronic obstructive pulmonary disease (COPD) patients
Cited by: 18
Author(s): Solveig Tangedal, Rune Nielsen, Marianne Aanerud, Louise Jeanette Pauline Persson, Harald G. Wiker, Per Bakke, Pieter S. Hiemstra, Tomas Mikal Eagan
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0239198

Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action
Cited by: 13
Author(s): Sarah A. Morley, Melissa M. Foley, Jeffrey J. Duda, Mathew M Beirne, Rebecca Paradis, Rachelle C. Johnson, Michael L. McHenry, Mel Elofson, Earnest M. Sampson, Randall E. McCoy, Justin Stapleton, George R. Pess
Software Mentions: 2
Published: almost 6 years ago

10.3389/fnut.2021.707763

In vitro Colon Fermentation of Soluble Arabinoxylan Is Modified Through Milling and Extrusion
Cited by: 9
Author(s): Teresa Demuth, Veronica Edwards, Lea Bircher, Christophe Lacroix, Laura Nyström, Annelies Geirnaert
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.7526

Seasonal dynamics of microbial diversity in the rhizosphere of <i>Ulmus pumila</i> L. var. <i>sabulosa</i> in a steppe desert area of Northern China
Cited by: 12
Author(s): Tianyu Liang, Guang Yang, Yunxia Ma, Quan‐Hong Yao, Yongxiang Ma, Hao Ma, Yang Hu, Ying Yang, Shaoxiong Wang, Yiyong Pan, Gangtie Li
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0243848

Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
Cited by: 13
Author(s): Mónica Oyuela Aguilar, Alex Gobbi, Patrick Browne, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen, Liliana Semorile, Mariano Pistorio
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20051232

Potential Functions of the Gastrointestinal Microbiome Inhabiting the Length of the Rat Digest Tract
Cited by: 4
Author(s): Dongyao Li, Haiqin Chen, Jianxin Zhao, Hao Zhang
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0110430

Evaluating the Spatio-Temporal Factors that Structure Network Parameters of Plant-Herbivore Interactions
Cited by: 48
Author(s): Antonio López‐Carretero, Cecilia Díaz‐Castelazo, Karina Boege, Victor Rico‐Gray
Software Mentions: 2
Published: almost 12 years ago

10.7554/eLife.57051

Modeling transfer of vaginal microbiota from mother to infant in early life
Cited by: 30
Author(s): Martin Steen Mortensen, Morten Arendt Rasmussen, Jakob Stokholm, Asker Brejnrod, Christina Balle, Jonathan Thorsen, Karen A. Krogfelt, Hans Bisgaard, Søren J. Sørensen
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm8020164

Fecal Microbiota Analysis in Patients Going through a Depressive Episode during Treatment in a Psychiatric Hospital Setting
Cited by: 26
Author(s): Paweł Liśkiewicz, Justyna Pełka-Wysiecka, Mariusz Kaczmarczyk, Igor Łoniewski, Michał Wroński, Agata Bąba-Kubiś, Karolina Skonieczna-Żydecka, Wojciech Marlicz, Błażej Misiak, Jerzy Samochowiec
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.01104

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
Cited by: 247
Author(s): Jessica L. Metcalf, Laura Wegener Parfrey, Antonio G. González, Christian L. Lauber, Dan Knights, Gail Ackermann, Gregory Humphrey, Matthew J. Gebert, Will Van Treuren, Donna Berg-Lyons, Kyle G. Keepers, Yan Guo, James W. Bullard, Noah Fierer, David Carter, Rob Knight
Software Mentions: 2
Published: almost 13 years ago

10.7554/eLife.61644

The diversity and function of sourdough starter microbiomes
Cited by: 66
Author(s): Elizabeth A. Landis, Angela M. Oliverio, Erin A. McKenney, Lauren M. Nichols, Nicole Kfoury, Megan N. Biango-Daniels, Leonora Shell, Anne A. Madden, Lori R. Shapiro, Shravya Sakunala, Kinsey Drake, Albert Robbat, Matthew Booker, Robert R. Dunn, Noah Fierer, Benjamin E. Wolfe
Software Mentions: 2
Published: over 5 years ago

10.1002/jia2.25628

Efficacy of silk fibroin biomaterial vehicle for <i>in vivo</i> mucosal delivery of Griffithsin and protection against HIV and SHIV infection <i>ex vivo</i>
Cited by: 13
Author(s): Katti R. Crakes, Carolina Herrera, John D. Morgan, Katie J. Olstad, Ann J. Hessell, Paul Ziprin, Patricia J. LiWang, Satya Dandekar
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0209549

Lack of conspecific visual discrimination between second-year males and females in the Saffron Finch
Cited by: 7
Author(s): María Juliana Benítez Saldívar, Viviana Massoni
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-12163-3

Short chain fatty acids ameliorate immune-mediated uveitis partially by altering migration of lymphocytes from the intestine
Cited by: 102
Author(s): Yukiko Nakamura, Cathleen Janowitz, Christina Metea, Mark Asquith, Lisa Karstens, James T. Rosenbaum, Phoebe Lin
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2020.01835

Effects of Gut Microbiome and Short-Chain Fatty Acids (SCFAs) on Finishing Weight of Meat Rabbits
Cited by: 25
Author(s): Shouguo Fang, Xuan Chen, Xiaoxing Ye, Liwen Zhou, Shuaishuai Xue, Qianfu Gan
Software Mentions: 2
Published: about 6 years ago

10.1098/rsos.191808

Commodity-specific punishment for experimentally induced defection in cooperatively breeding fish
Cited by: 16
Author(s): Jan Naef, Michael Taborsky
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.02708

Roots and Panicles of the C4 Model Grasses Setaria viridis (L). and S. pumila Host Distinct Bacterial Assemblages With Core Taxa Conserved Across Host Genotypes and Sampling Sites
Cited by: 11
Author(s): Carolina Escobar Rodríguez, Birgit Mitter, Livio Antonielli, Friederike Trognitz, Stéphane Compant, Angela Sessitsch
Software Mentions: 2
Published: almost 8 years ago

10.1007/s13238-020-00774-y

Is oral microbiome of children able to maintain resistance and functional stability in response to short-term interference of ingesta?
Cited by: 6
Author(s): Fangqiao Wei, Xiangyu Sun, Yufeng Gao, Haoyu Dou, Liu Yang, Lili Song, H. Luo, Ce Zhu, Qian Zhang, Peiyuan Tong, Wen Ren, Zhe Xun, Ruochun Guo, Yuanlin Guan, Shenghui Li, Yongwen Qi, Junjie Qin, Feng Chen, Shu Guo Zheng
Software Mentions: 2
Published: about 6 years ago

10.1007/s00442-021-04865-3

Plant species- and stage-specific differences in microbial decay of mangrove leaf litter: the older the better?
Cited by: 18
Author(s): Novia Arinda Pradisty, Ahmad Aldrie Amir, Martin Zimmer
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm8081089

Gut Microbiota and Risk of Persistent Nonalcoholic Fatty Liver Diseases
Cited by: 37
Author(s): Hanna Kim, Eun-Jeong Joo, Hae Suk Cheong, Yejin Kim, Hyung-Lae Kim, Hocheol Shin, Yoosoo Chang, Seungho Ryu
Software Mentions: 2
Published: about 7 years ago

10.1007/s00442-020-04746-1

Functional diversity of habitat formers declines scale-dependently across an environmental stress gradient
Cited by: 12
Author(s): Laura Cappelatti, Alizée R. L. Mauffrey, John N. Griffin
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.635881

Organic Waste Substrates Induce Important Shifts in Gut Microbiota of Black Soldier Fly (Hermetia illucens L.): Coexistence of Conserved, Variable, and Potential Pathogenic Microbes
Cited by: 42
Author(s): Chrysantus M. Tanga, Jacqueline Wahura Waweru, Yosef Hamba Tola, Abel Anyega Onyoni, Fathiya M. Khamis, Sunday Ekesi, Juan C. Paredes
Software Mentions: 2
Published: over 5 years ago

10.1007/s00442-020-04668-y

Regulation of fatty acid composition related to ontogenetic changes and niche differentiation of a common aquatic consumer
Cited by: 17
Author(s): Fernando Chaguaceda, Peter Eklöv, Kristin Scharnweber
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0102498

Sediment and Turbidity Associated with Offshore Dredging Increase Coral Disease Prevalence on Nearby Reefs
Cited by: 166
Author(s): F. Joseph Pollock, Joleah B. Lamb, Stuart N. Field, Scott F. Heron, Britta Schaffelke, George Shedrawi, David G. Bourne, Bette L. Willis
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2019.00537

Fungal Community Structural and Microbial Functional Pattern Changes After Soil Amendments by Oilseed Meals of Jatropha curcas and Camelina sativa: A Microcosm Study
Cited by: 10
Author(s): Ping Hu, Liangjun Wu, Emily B. Hollister, Autumn S. Wang, Anilkumar C. Somenahally, Frank M. Hons, Terry J. Gentry
Software Mentions: 2
Published: over 7 years ago

10.3390/jcm8111770

An Association of Gut Microbiota with Different Phenotypes in Chinese Patients with Rheumatoid Arthritis
Cited by: 59
Author(s): Hung‐Ting Chiang, Jiànróng Lǐ, Chun-Chi Liu, Po‐Yu Liu, Hsin‐Hua Chen, Yiming Chen, Joung‐Liang Lan, Der‐Yuan Chen
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.5808

Distinguishing Anuran species by high‐resolution melting analysis of the COI barcode (COI‐HRM)
Cited by: 6
Author(s): Steven Everman, Shiao Y. Wang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0178559

Distribution and diversity of aquatic macroinvertebrate assemblages in a semi-arid region earmarked for shale gas exploration (Eastern Cape Karoo, South Africa)
Cited by: 28
Author(s): Annah Mabidi, Matthew S. Bird, Renzo Perissinotto
Software Mentions: 2
Published: about 9 years ago

10.1002/ece3.4667

Contrasting patterns of neutral and functional genetic diversity in stable and disturbed environments
Cited by: 15
Author(s): Yeşerin Yıldırım, Jon Tinnert, Anders Forsman
Software Mentions: 2
Published: almost 8 years ago

10.3390/jcm9051589

Major Lipids, Apolipoproteins, and Alterations of Gut Microbiota
Cited by: 18
Author(s): Kyung Eun Yun, Jimin Kim, Mi‐Hyun Kim, Eunkyo Park, Hyung-Lae Kim, Yoosoo Chang, Seungho Ryu, Hanna Kim
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0168391

The Roles of Sea-Ice, Light and Sedimentation in Structuring Shallow Antarctic Benthic Communities
Cited by: 41
Author(s): Graeme F. Clark, Jonathan S. Stark, Anne S. Palmer, Martin J. Riddle, Emma L. Johnston
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.4809

A quantitative approach to determine the taxonomic identity and ontogeny of the pycnodontiform fish<i>Pycnodus</i>(Neopterygii, Actinopterygii) from the Eocene of Bolca Lagerstätte, Italy
Cited by: 7
Author(s): John Joseph Cawley, Giuseppe Marramà, Giorgio Carnevale, Jürgen Kriwet
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.8735

Contemporary diets of walruses in Bristol Bay, Alaska suggest temporal variability in benthic community structure
Cited by: 6
Author(s): John M. Maniscalco, Alan M. Springer, Katrina L. Counihan, Tuula E. Hollmén, Helen Aderman, Moses Toyukak
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.02004

Taxonomy, Diet, and Developmental Stage Contribute to the Structuring of Gut-Associated Bacterial Communities in Tephritid Pest Species
Cited by: 24
Author(s): Antonios A. Augustinos, George Tsiamis, Carlos Cáceres, Adly M. M. Abd-Alla, Kostas Bourtzis
Software Mentions: 2
Published: about 7 years ago

10.1002/prca.201900058

Dysbiosis of the Oral Ecosystem in Severe Congenital Neutropenia Patients
Cited by: 5
Author(s): Egija Zaura, Bernd W. Brandt, Mark J. Buijs, Gülnur Emingil, Merve Ergüz, Deniz Yılmaz Karapınar, Burç Pekpinarli, Kai Bao, Georgios N. Belibasakis, Nagihan Bostancı
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.01312

Eelgrass Leaf Surface Microbiomes Are Locally Variable and Highly Correlated with Epibiotic Eukaryotes
Cited by: 37
Author(s): Mia M. Bengtsson, Anton Bühler, Anne Bräuer, Sven Dahlke, Hendrik Schubert, Irmgard Blindow
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2018.01967

Butyrate Protects Mice Against Methionine–Choline-Deficient Diet-Induced Non-alcoholic Steatohepatitis by Improving Gut Barrier Function, Attenuating Inflammation and Reducing Endotoxin Levels
Cited by: 128
Author(s): Jianzhong Ye, Longxian Lv, Wenshuai Wu, Yating Li, Ding Shi, Daiqiong Fang, Feifei Guo, Huiyong Jiang, Yan Ren, Wanchun Ye
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0201269

Variation in species diversity of deep-water megafauna assemblages in the Caribbean across depth and ecoregions
Cited by: 9
Author(s): Iván Hernández-Ávila, Edlin Guerra‐Castro, Carolina Bracho, Martín Rada, Frank A. Ocaña, Daniel Pech
Software Mentions: 2
Published: about 8 years ago

10.3390/ijerph18168254

Soy and Frequent Dairy Consumption with Subsequent Equol Production Reveals Decreased Gut Health in a Cohort of Healthy Puerto Rican Women
Cited by: 3
Author(s): Mercedes Lacourt-Ventura, Brayan Vilanova-Cuevas, Delmarie Rivera-Rodríguez, Raysa Rosario-Acevedo, Christine Miranda, Gerónimo Maldonado-Martínez, Johanna Maysonet, Darlene Vargas, Yelitza Ruiz, Robert Hunter-Mellado, Luis A. Cubano, Suranganie Dharmawardhane, Johanna W. Lampe, Abel Baerga‐Ortiz, Filipa Godoy-Vitorino, Michelle M. Martínez-Montemayor
Software Mentions: 2
Published: about 5 years ago

10.3390/ijerph17249157

The Response of Arbuscular Mycorrhizal Fungal Communities to the Soil Environment of Underground Mining Subsidence Area in Northwest China
Cited by: 3
Author(s): Hai Huang, Jing Guo, Yuxiu Zhang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-11678-z

Impacts of aquaculture wastewater irrigation on soil microbial functional diversity and community structure in arid regions
Cited by: 26
Author(s): Lijuan Chen, Qi Feng, Changsheng Li, Yongping Wei, Yan Zhao, Yongjiu Feng, Hang Zheng, Fengrui Li, Huiya Li
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.01529

Establishment of Coral-Bacteria Symbioses Reveal Changes in the Core Bacterial Community With Host Ontogeny
Cited by: 43
Author(s): Rachele Bernasconi, Michael Stat, Annette Koenders, Andrea Paparini, Michael Bunce, Megan J. Huggett
Software Mentions: 2
Published: about 7 years ago

10.3390/ijerph17197081

Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.01923

Genetic and Functional Diversity of Bacterial Microbiome in Soils With Long Term Impacts of Petroleum Hydrocarbons
Cited by: 64
Author(s): Anna Gałązka, Jarosław Grządziel, Rafał Gałązka, Aleksandra Ukalska‐Jaruga, Joanna Strzelecka, Bożena Smreczak
Software Mentions: 2
Published: about 8 years ago

10.3390/ijerph16214160

Indoor Microbiome and Antibiotic Resistance on Floor Surfaces: An Exploratory Study in Three Different Building Types
Cited by: 15
Author(s): Mridula Gupta, Seungjun Lee, Michael Bisesi, Jiyoung Lee
Software Mentions: 2
Published: almost 7 years ago

10.3390/jcm9082411

Effect of Manual Therapy and Splint Therapy in People with Temporomandibular Disorders: A Preliminary Study
Cited by: 14
Author(s): Gemma Victoria Espí-López, Anna Arnal‐Gómez, Alba Cuerda Del Pino, José Benavent-Corai, Pilar Serra-Añó, Marta Inglés
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0214582

Hepatic glycogen storage diseases are associated to microbial dysbiosis
Cited by: 16
Author(s): Karina Colonetti, Bruna Bento dos Santos, Tatiéle Nalin, Carolina Fischinger Moura de Souza, Eric W. Triplett, Priscila Caroline Thiago Dobbler, Ida Vanessa Döederlein Schwartz, Luiz Fernando Würdig Roesch
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-11423-6

Assessing the potential for raw meat to influence human colonization with Staphylococcus aureus
Cited by: 14
Author(s): Margaret Carrel, Zhao Chang, Dipendra Thapaliya, Patrick Bitterman, Ashley E. Kates, Blake Hanson, Tara C. Smith
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0118580

Natural Shorelines Promote the Stability of Fish Communities in an Urbanized Coastal System
Cited by: 23
Author(s): Steven B. Scyphers, Tarik C. Gouhier, Jonathan H. Grabowski, Michael W. Beck, John F. Mareska, Sean P. Powers
Software Mentions: 2
Published: about 11 years ago

10.3390/jcm9123877

New Insights into the Microbial Profiles of Infected Root Canals in Traumatized Teeth
Cited by: 10
Author(s): Lokeshwaran Manoharan, Malin Brundin, Olena Rakhimova, Luis Chávez de Paz, Nelly Romani Vestman
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.00491

Mineral Ecology: Surface Specific Colonization and Geochemical Drivers of Biofilm Accumulation, Composition, and Phylogeny
Cited by: 33
Author(s): A. A. Jones, Philip C. Bennett
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.653027

Impact of Olive Saplings and Organic Amendments on Soil Microbial Communities and Effects of Mineral Fertilization
Cited by: 6
Author(s): Miquel Llimós, Guillem Segarra, Marc Sancho-Adamson, M.I. Trillas, Joan Romanyà
Software Mentions: 2
Published: about 5 years ago

10.3390/jcm9124068

Oral Microbiome Signatures in Hematological Cancers Reveal Predominance of Actinomyces and Rothia Species
Cited by: 11
Author(s): Jean-Luc Mougeot, Micaela F. Beckman, Holden C. Langdon, Michael T. Brennan, Farah Bahrani Mougeot
Software Mentions: 2
Published: over 5 years ago