cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-45279-9

Changes in human mandibular shape during the Terminal Pleistocene-Holocene Levant
Cited by: 12
Author(s): Ariel Pokhojaev, Hadas Leah Avni, Tatiana Sella Tunis, Rachel Sarig, Hila May
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-46015-z

Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing
Cited by: 122
Author(s): Daniela Numberger, Lars Ganzert, Luca Zoccarato, Kristin Mühldorfer, Sascha Sauer, Hans‐Peter Grossart, Alex D. Greenwood
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-46173-0

Does the endometrial cavity have a molecular microbial signature?
Cited by: 98
Author(s): Andrew D. Winters, Roberto Romero, Maria Teresa Gervasi, Nardhy Gómez-López, Maria Rosa Tran, Valeria Garcia‐Flores, Percy Pacora, Eun-Jung Jung, Sonia S. Hassan, Chaur‐Dong Hsu, Kevin R. Theis
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-47793-2

Human pressures on two estuaries of the Iberian Peninsula are reflected in food web structure
Cited by: 10
Author(s): I. Donázar-Aramendía, J. E. Sánchez-Moyano, I. García-Asencio, J.M. Miró, César Megina, José Carlos García‐Gómez
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-47899-7

Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water
Cited by: 90
Author(s): Luke E. Holman, Mark de Bruyn, Simon Creer, Gary R. Carvalho, Julie Robidart, Marc Rius
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79102-7

Selenization of S. cerevisiae increases its protective potential in experimental autoimmune encephalomyelitis by triggering an intestinal immunomodulatory loop
Cited by: 4
Author(s): Thais Fernanda de Campos Fraga-Silva, Luiza Ayumi Nishiyama Mimura, Larissa Ragozo Cardoso de Oliveira, Juliana Helena dos Santos de Toledo, Patrícia Aparecida Borim, Sofia Fernanda Gonçalves Zorzella-Pezavento, Diego Peres Alonso, Paulo Eduardo Martins Ribolla, Carlos Alberto Ferreira de Oliveira, Denise Morais da Fonseca, Eduardo J. Villablanca, Alexandrina Sartori
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-79647-7

Stoichiometric niche, nutrient partitioning and resource allocation in a solitary bee are sex-specific and phosphorous is allocated mainly to the cocoon
Cited by: 21
Author(s): Michał Filipiak, Michał Woyciechowski, Marcin Czarnołęski
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-80859-0

Differences in the bacteriome of swab, saliva, and tissue biopsies in oral cancer
Cited by: 25
Author(s): Divya Gopinath, Rohit Kunnath Menon, Chun Wie Chong, Moinak Banerjee, Swagatika Panda, Deviprasad Mandal, Paresh Kumar Behera, Susanta Roychoudhury, Supriya Kheur, MG Botelho, Newell W. Johnson
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-80278-1

Neonatal intensive care unit (NICU) exposures exert a sustained influence on the progression of gut microbiota and metabolome in the first year of life
Cited by: 9
Author(s): Polly Soo Xi Yap, Chun Wie Chong, Azanna Ahmad Kamar, Ivan Kok Seng Yap, Yao Mun Choo, Nai Ming Lai, Cindy Shuan Ju Teh
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-81105-x

The relationships between microbiota and the amino acids and organic acids in commercial vegetable pickle fermented in rice-bran beds
Cited by: 8
Author(s): Kazunori Sawada, Hitoshi Koyano, Nozomi Yamamoto, Takuji Yamada
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-82348-4

A synthetic kinematic index of trunk displacement conveying the overall motor condition in Parkinson’s disease
Cited by: 6
Author(s): Emahnuel Troisi Lopez, Roberta Minino, Pierpaolo Sorrentino, Rosaria Rucco, Anna Carotenuto, Valeria Agosti, Domenico Tafuri, Valentino Manzo, Marianna Liparoti, Giuseppe Sorrentino
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-82538-0

Alterations in the gut bacterial microbiome in people with type 2 diabetes mellitus and diabetic retinopathy
Cited by: 83
Author(s): Taraprasad Das, Rajagopalaboopathi Jayasudha, SamaKalyana Chakravarthy, Gumpili Sai Prashanthi, Archana Bhargava, Mudit Tyagi, Padmaja Kumari Rani, Rajeev Reddy Pappuru, Savitri Sharma, Sisinthy Shivaji
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-82482-z

Meta-analysis cum machine learning approaches address the structure and biogeochemical potential of marine copepod associated bacteriobiomes
Cited by: 9
Author(s): Balamurugan Sadaiappan, Chinnamani PrasannaKumar, V. Uthara Nambiar, Mahendran Subramanian, Mangesh Gauns
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83286-x

Rainfall as a trigger of ecological cascade effects in an Australian groundwater ecosystem
Cited by: 16
Author(s): Mattia Saccò, Alison J. Blyth, William F. Humphreys, Steven J. Cooper, Nicole E. White, Matthew A. Campbell, Mahsa Mousavi‐Derazmahalleh, Quan Hua, Debashish Mazumder, Colin Smith, Christian Griebler, Kliti Grice
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83284-z

Ingestion of probiotic (Lactobacillus helveticus and Bifidobacterium longum) alters intestinal microbial structure and behavioral expression following social defeat stress
Cited by: 29
Author(s): Katherine A. Partrick, Anna M. Rosenhauer, Jérémie Auger, Amanda R. Arnold, Nicole M Ronczkowski, Lanaya M Jackson, Magen N Lord, Sara Abdulla, Benoît Chassaing, Kim L. Huhman
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83866-x

Contrasting multitaxon responses to climate change in Mediterranean mountains
Cited by: 23
Author(s): Luca Di Nuzzo, Chiara Vallese, Renato Benesperi, Paolo Giordani, Alessandro Chiarucci, Valter Di Cecco, Luciano Di Martino, Michele Di Musciano, Gabriele Gheza, Chiara Lelli, Daniel Spitale, Juri Nascimbene
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83846-1

High abundance of sugar metabolisers in saliva of children with caries
Cited by: 10
Author(s): Muhammed A.P. Manzoor, Sohvi Lommi, Jussi Furuholm, Catharina Sarkkola, Elina Engberg, Sajan C. Raju, Heli Viljakainen
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-84783-9

Associations between the gut microbiome and fatigue in cancer patients
Cited by: 19
Author(s): Joud Hajjar, Tito R. Mendoza, Liangliang Zhang, Siqing Fu, Sarina A. Piha-Paul, David S. Hong, Filip Janků, Daniel D. Karp, Alexej Ballhausen, Jing Gong, Abdulrazzak Zarifa, Christine B. Peterson, Funda Meric‐Bernstam, Robert R. Jenq, Aung Naing
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-85538-2

Ant social foraging strategies along a Neotropical gradient of urbanization
Cited by: 10
Author(s): Wesley Dáttilo, Ian MacGregor-Fors
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-84965-5

How mountains and elevations shape the spatial distribution of beetles in Peninsular Malaysia
Cited by: 5
Author(s): Muneeb M. Musthafa, Fauziah Abdullah, Ana Paola Martínez-Falcón, Mark de Bruyn
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-87408-3

Exogenous enzymes and probiotics alter digestion kinetics, volatile fatty acid content and microbial interactions in the gut of Nile tilapia
Cited by: 29
Author(s): Roel M. Maas, Yale Deng, Yueming Dersjant-Li, Jules Petit, M.C.J. Verdegem, J.W. Schrama, Fotini Kokou
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-88495-y

Streptomyces strains modulate dynamics of soil bacterial communities and their efficacy in disease suppression caused by Phytophthora capsici
Cited by: 18
Author(s): Sakineh Abbasi, Aymé Spor, Akram Sadeghi, Naser Safaie
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-88658-x

Uncovering the hidden bacterial ghost communities of yeast and experimental evidences demonstrates yeast as thriving hub for bacteria
Cited by: 3
Author(s): B. Indu, Tallapragada Keertana, Ipsita Sahu, Uppada Jagadeeshwari, Ch. Sasikala, Chintalapati Venkata Ramana
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-88252-1

The airborne mycobiome and associations with mycotoxins and inflammatory markers in the Norwegian grain industry
Cited by: 4
Author(s): Anne Straumfors, Sunil Mundra, Oda A H Foss, Steen Mollerup, Hävard Kauserud
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89308-y

Decrease of α-defensin impairs intestinal metabolite homeostasis via dysbiosis in mouse chronic social defeat stress model
Cited by: 21
Author(s): Kosuke Suzuki, Kiminori Nakamura, Yu Shimizu, Yoshiaki Yokoi, Shuya Ohira, Mizu Hagiwara, Yi Wang, Yuchi Song, Tomoyasu Aizawa, Tokiyoshi Ayabe
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89822-z

Longitudinal profiling of the burn patient cutaneous and gastrointestinal microbiota: a pilot study
Cited by: 6
Author(s): Kelly M. Lima, Ryan R. Davis, Stephenie Y. Liu, David G. Greenhalgh, Nam K. Tran
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90024-w

The gut microbiome in pancreatogenic diabetes differs from that of Type 1 and Type 2 diabetes
Cited by: 8
Author(s): Rupjyoti Talukdar, Priyanka Sarkar, Aparna Jakkampudi, Subhaleena Sarkar, Mohsin Aslam, Manasa Jandhyala, G. Deepika, Misbah Unnisa, D. Nageshwar Reddy
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90553-4

Identification of mucin degraders of the human gut microbiota
Cited by: 48
Author(s): Stefano Raimondi, Eliana Musmeci, Francesco Candeliere, Alberto Amaretti, Maddalena Rossi
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91182-7

Soil degradation influences soil bacterial and fungal community diversity in overgrazed alpine meadows of the Qinghai-Tibet Plateau
Cited by: 20
Author(s): Lin Dong, Jingjing Li, Juan Sun, Chao Yang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89903-z

Integrating multiple chemical tracers to elucidate the diet and habitat of Cookiecutter Sharks
Cited by: 7
Author(s): Aaron B. Carlisle, Elizabeth Andruszkiewicz Allan, Sora L. Kim, Lauren Meyer, Jesse A. Port, Stephen R. Scherrer, John B. O’Sullivan
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90888-y

Bacteroides uniformis CECT 7771 alleviates inflammation within the gut-adipose tissue axis involving TLR5 signaling in obese mice
Cited by: 27
Author(s): Emanuel Fabersani, Kevin J. Portune, Isabel Campillo, Inmaculada López-Almela, Sergio Montserrat‐de la Paz, Marina Romaní-Pérez, Alfonso Benı́tez-Páez, Yolanda Sanz
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90204-8

Nitrogen fixation and denitrification activity differ between coral- and algae-dominated Red Sea reefs
Cited by: 10
Author(s): Yusuf C. El-Khaled, Florian Roth, Nils Rädecker, Arjen Tilstra, Denis B. Karcher, Benjamin Kürten, Burton H. Jones, Christian R. Voolstra, Christian Wild
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91387-w

Choice of 16S ribosomal RNA primers affects the microbiome analysis in chicken ceca
Cited by: 20
Author(s): Nadia Darwish, Jonathan Shao, Lori L. Schreier, Monika Proszkowiec‐Weglarz
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.02336-20

The Native Microbiome is Crucial for Offspring Generation and Fitness of Aurelia aurita
Cited by: 21
Author(s): Nancy Weiland‐Bräuer, Nicole Pinnow, Daniela Langfeldt, Anna Krystyna Roik, Simon Güllert, Cynthia Maria Chibani, Thorsten B.H. Reusch, Ruth A. Schmitz
Software Mentions: 2
Published: almost 4 years ago

10.1128/mBio.00294-21

Effect of HIV/HAART and Other Clinical Variables on the Oral Mycobiome Using Multivariate Analyses
Cited by: 13
Author(s): Paul L. Fidel, Zach A. Thompson, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Laura Cook, Shahr B. Hashmi, Daniel J. Lisko, Chiranjit Mukherjee, José Antonio Vázquez, Michael E. Hagensee, Ann L. Griffen, Eugene J. Leys, Clifford J. Beall
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.01777-21

Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome
Cited by: 66
Author(s): Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G Cobián-Güemes, Madeline S Merlino, Louis J. Taylor, Abigail Glascock, Kyle Bittinger, Ceylan Tanes, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Shantan Reddy, Amy E. Baxter, Josephine R. Giles, Derek A. Oldridge, Nuala J. Meyer, E. John Wherry, John E. McGinniss, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00327-17

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young
Cited by: 130
Author(s): Gaorui Bian, Gregory B. Gloor, Aihua Gong, Changsheng Jia, Wei Zhang, Jun Hu, Hong Zhang, Yumei Zhang, Zhiyong Zhou, Jiangao Zhang, Jeremy P. Burton, Gregor Reid, Yongliang Xiao, Qiang Zeng, Kaiping Yang, Jiangang Li
Software Mentions: 2
Published: about 7 years ago

10.1128/mSphere.00366-17

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon
Cited by: 8
Author(s): Bruno S. de O. Silva, Felipe H. Coutinho, Gustavo Bueno Gregoracci, Luciana Leomil, Louisi Souza de Oliveira, Adriana M. Fróes, Diogo A. Tschoeke, Ana Carolina Soares, Anderson de Souza Cabral, Nicholas D. Ward, Jeffrey E. Richey, Alex V. Krusche, Patricia L. Yager, Carlos Eduardo de Rezende, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 2
Published: about 7 years ago

10.1128/mSphereDirect.00527-17

Subgingival Microbiome Colonization and Cytokine Production during Early Dental Implant Healing
Cited by: 12
Author(s): Jeffrey B. Payne, Paul G. Johnson, Car Reen Kok, João Carlos Gomes-Neto, Amanda E. Ramer‐Tait, Marian J. Schmid, Robert W. Hutkins
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSphere.00418-17

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish
Cited by: 48
Author(s): Anti Vasemägi, Marko Visse, Veljo Kisand
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSphere.00229-18

Potential Mechanism of Detoxification of Cyanide Compounds by Gut Microbiomes of Bamboo-Eating Pandas
Cited by: 49
Author(s): Lifeng Zhu, Yang Zhang, Ru Yao, Liangliang Xu, Hua Chen, Xun Gu, Tonggui Wu, Xiangdong Yang
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00679-18

Comparison of Subtyping Approaches and the Underlying Drivers of Microbial Signatures for Chronic Rhinosinusitis
Cited by: 16
Author(s): Kristi Biswas, Raewyn Cavubati, Shan Gunaratna, Michael Hoggard, Sharon Waldvogel-Thurlow, Jiwon Hong, Kevin Chang, Brett Wagner Mackenzie, Michael W. Taylor, Richard Douglas
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSphere.00446-19

Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life
Cited by: 4
Author(s): T. M. Royalty, Andrew D. Steen
Software Mentions: 2
Published: over 5 years ago

10.1128/mSphere.00991-20

Effects of Seasonal Anoxia on the Microbial Community Structure in Demosponges in a Marine Lake in Lough Hyne, Ireland
Cited by: 4
Author(s): Astrid Schuster, Brian Strehlow, Lisa K. Eckford-Soper, Rob McAllen, Donald E. Canfield
Software Mentions: 2
Published: almost 4 years ago

10.1128/mSphere.00208-21

Cyanophage Diversity and Community Structure in Dead Zone Sediments
Cited by: 8
Author(s): Elias Broman, Karin Holmfeldt, Stefano Bonaglia, Per Hall, Francisco J. A. Nascimento
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00467-21

Seasonal Dietary Shifts Alter the Gut Microbiota of Avivorous Bats: Implication for Adaptation to Energy Harvest and Nutritional Utilization
Cited by: 9
Author(s): Lixin Gong, Boyu Liu, Hui Wu, Feng Jiang, Tinglei Jiang
Software Mentions: 2
Published: over 3 years ago

10.1128/mSystems.00166-16

Uncovering the Horseshoe Effect in Microbial Analyses
Cited by: 58
Author(s): James T. Morton, Liam Toran, Anna Edlund, Jessica L. Metcalf, Christian L. Lauber, Rob Knight
Software Mentions: 2
Published: almost 8 years ago

10.1128/mSystems.00004-17

Meta-analysis To Define a Core Microbiota in the Swine Gut
Cited by: 197
Author(s): Devin B. Holman, Brian W. Brunelle, Julian Trachsel, Heather K. Allen
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00047-17

Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice
Cited by: 16
Author(s): Koji Yasuda, Tiffany Y. Hsu, Carey Ann Gallini, Lauren J. Mclver, Emma Schwager, Andy Shi, Casey DuLong, Randall Schwager, Galeb Abu-Ali, Eric A. Franzosa, Wendy S. Garrett, Curtis Huttenhower, Xochitl C. Morgan
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00036-17

Development of Inflammatory Bowel Disease Is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice
Cited by: 40
Author(s): Thomas J. Sharpton, Svetlana Lyalina, Julie Luong, Joey Pham, Emily M. Deal, Courtney R. Armour, Christopher A. Gaulke, Shomyseh Sanjabi, Katherine S. Pollard
Software Mentions: 2
Published: about 7 years ago

10.1128/mSystems.00129-17

A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites
Cited by: 55
Author(s): John L. Chodkowski, Ashley Shade
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.00214-17

Linking Nitrogen Load to the Structure and Function of Wetland Soil and Rhizosphere Microbial Communities
Cited by: 50
Author(s): Eric R. Hester, Sarah F. Harpenslager, J.M.H. van Diggelen, Leon L. Lamers, Mike S. M. Jetten, Claudia Lüke, Sebastian Lücker, Cornelia U. Welte
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.00020-18

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome
Cited by: 86
Author(s): Anupriya Tripathi, Alexey V. Melnik, Jin Xue, Orit Poulsen, Michael J. Meehan, Gregory Humphrey, Lingjing Jiang, Gail Ackermann, Daniel McDonald, Dan Zhou, Rob Knight, Pieter C. Dorrestein, Gabriel G. Haddad
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00113-18

Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge
Cited by: 13
Author(s): Sean Ting Shyang Wei, Yu Wei Wu, Tzong‐Huei Lee, Yi Huang, Cheng Yu Yang, Yi Lung Chen, Yin-Ru Chiang
Software Mentions: 2
Published: about 6 years ago

10.1038/s41396-019-0436-6

Microbial succession on decomposing root litter in a drought-prone Scots pine forest
Cited by: 67
Author(s): Claude Herzog, Martin Hartmann, Beat Frey, Beat Stierli, Cornélia Rumpel, Nina Buchmann, Ivano Brunner
Software Mentions: 2
Published: over 5 years ago

10.1038/s41396-018-0326-3

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation
Cited by: 83
Author(s): Greta Reintjes, Carol Arnosti, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41396-021-00925-x

Host genetics exerts lifelong effects upon hindgut microbiota and its association with bovine growth and immunity
Cited by: 34
Author(s): Peixin Fan, Corwin D. Nelson, Joseph Driver, Mauricio A. Elzo, Francisco Peñagaricano, KwangCheol Casey Jeong
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41396-019-0438-4

Unveiled feather microcosm: feather microbiota of passerine birds is closely associated with host species identity and bacteriocin-producing bacteria
Cited by: 23
Author(s): Veronika Javůrková, Jakub Kreisinger, Petr Procházka, Milica Požgayová, Kateřina Ševčíková, Vojtěch Brlík, Peter Adamík, Petr Heneberg, Jiří Porkert
Software Mentions: 2
Published: over 5 years ago

10.1111/jfb.12998

An assessment of juvenile Atlantic cod Gadus morhua distribution and growth using diver operated stereo‐video surveys
Cited by: 3
Author(s): Sophie Elliott, Pauliina A. Ahti, Michael R. Heath, W.R. Turrell, David M. Bailey
Software Mentions: 2
Published: over 8 years ago

10.3390/jof5010015

High-Throughput Sequencing to Investigate Phytopathogenic Fungal Propagules Caught in Baited Insect Traps
Cited by: 11
Author(s): Émilie D. Tremblay, Troy Kimoto, Jean A. Bérubé, Guillaume J. Bilodeau
Software Mentions: 2
Published: almost 6 years ago

10.3390/jof7050321

Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts
Cited by: 5
Author(s): A. Ayed, Geoffroy Saint-Genis, Laurent Vallon, Dolores Linde, Annick Turbé-Doan, Mireille Haon, Mariane Daou, Emmanuel Bertrand, Craig B. Faulds, Giuliano Sciara, Martino Adamo, Roland Marmeisse, Sophie Comtet-Marre, Pierre Peyret, Danis Abrouk, Francisco J. Ruíz-Dueñas, Cyril Marchand, Mylène Hugoni, Patricia Luis, Tahar Mechichi, Éric Record
Software Mentions: 2
Published: over 3 years ago

10.3390/jof7070578

Fungal Endophytic Community and Diversity Associated with Desert Shrubs Driven by Plant Identity and Organ Differentiation in Extremely Arid Desert Ecosystem
Cited by: 19
Author(s): Yiling Zuo, Li Xia, Jingya Yang, Jiaqiang Liu, Lili Zhao, Xueli He
Software Mentions: 2
Published: over 3 years ago

10.3390/jof7090751

Effect of a Wood-Based Carrier of Trichoderma atroviride SC1 on the Microorganisms of the Soil
Cited by: 4
Author(s): Hamza Chammem, Livio Antonielli, Andrea Nesler, Massimo Pindo, I. Pertot
Software Mentions: 2
Published: about 3 years ago

10.3390/jof7090775

Macrofungi Cultivation in Shady Forest Areas Significantly Increases Microbiome Diversity, Abundance and Functional Capacity in Soil Furrows
Cited by: 6
Author(s): Dong Liu, Yanliang Wang, Peng Zhang, Fuqiang Yu, Jesús Pérez‐Moreno
Software Mentions: 2
Published: about 3 years ago

10.7189/jogh-09-010431

Software Mentions: 2

10.1155/2020/6639118

Rhizobacteria Communities of Phytoremediation Plant Species in Petroleum Hydrocarbon Contaminated Soil of the Sudd Ecosystem, South Sudan
Cited by: 9
Author(s): J. A. Ruley, John Baptist Tumuhairwe, Alice Amoding, Ola Tveitereid Westengen, Hilde Vinje
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijerph16081375

Bioaerosols Play a Major Role in the Nasopharyngeal Microbiota Content in Agricultural Environment
Cited by: 25
Author(s): Hamza Mbareche, Marc Veillette, Jonathan Pilote, Valérie Létourneau, Caroline Duchaine
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph16132335

Major Differences in the Diversity of Mycobiomes Associated with Wheat Processing and Domestic Environments: Significant Findings from High-Throughput Sequencing of Fungal Barcode ITS1
Cited by: 5
Author(s): Erika Yashiro, Dessislava Savova-Bianchi, Hélène Niculita‐Hirzel
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph16214160

Indoor Microbiome and Antibiotic Resistance on Floor Surfaces: An Exploratory Study in Three Different Building Types
Cited by: 15
Author(s): Mridula Gupta, Seungjun Lee, Michael Bisesi, Jiyoung Lee
Software Mentions: 2
Published: about 5 years ago

10.3390/ijerph17197081

Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: about 4 years ago

10.3390/ijerph17249157

The Response of Arbuscular Mycorrhizal Fungal Communities to the Soil Environment of Underground Mining Subsidence Area in Northwest China
Cited by: 3
Author(s): Hai Huang, Jing Guo, Yuxiu Zhang
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijerph18168254

Soy and Frequent Dairy Consumption with Subsequent Equol Production Reveals Decreased Gut Health in a Cohort of Healthy Puerto Rican Women
Cited by: 3
Author(s): Mercedes Lacourt-Ventura, Brayan Vilanova-Cuevas, Delmarie Rivera-Rodríguez, Raysa Rosario-Acevedo, Christine Miranda, Gerónimo Maldonado-Martínez, Johanna Maysonet, Darlene Vargas, Yelitza Ruiz, Robert Hunter-Mellado, Luis A. Cubano, Suranganie Dharmawardhane, Johanna W. Lampe, Abel Baerga‐Ortiz, Filipa Godoy-Vitorino, Michelle M. Martínez-Montemayor
Software Mentions: 2
Published: over 3 years ago

10.1007/s00442-020-04668-y

Regulation of fatty acid composition related to ontogenetic changes and niche differentiation of a common aquatic consumer
Cited by: 17
Author(s): Fernando Chaguaceda, Peter Eklöv, Kristin Scharnweber
Software Mentions: 2
Published: over 4 years ago

10.1007/s00442-020-04746-1

Functional diversity of habitat formers declines scale-dependently across an environmental stress gradient
Cited by: 12
Author(s): Laura Cappelatti, Alizée R. L. Mauffrey, John N. Griffin
Software Mentions: 2
Published: about 4 years ago

10.1007/s00442-021-04865-3

Plant species- and stage-specific differences in microbial decay of mangrove leaf litter: the older the better?
Cited by: 18
Author(s): Novia Arinda Pradisty, Ahmad Aldrie Amir, Martin Zimmer
Software Mentions: 2
Published: almost 4 years ago

10.1002/jia2.25628

Efficacy of silk fibroin biomaterial vehicle for in vivo mucosal delivery of Griffithsin and protection against HIV and SHIV infection ex vivo
Cited by: 13
Author(s): Katti R. Crakes, Carolina Herrera, John D. Morgan, Katie J. Olstad, Ann J. Hessell, Paul Ziprin, Patricia J. LiWang, Satya Dandekar
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.61644

The diversity and function of sourdough starter microbiomes
Cited by: 66
Author(s): Elizabeth A. Landis, Angela M. Oliverio, Erin A. McKenney, Lauren M. Nichols, Nicole Kfoury, Megan N. Biango-Daniels, Leonora Shell, Anne A. Madden, Lori R. Shapiro, Shravya Sakunala, Kinsey Drake, Albert Robbat, Matthew Booker, Robert R. Dunn, Noah Fierer, Benjamin E. Wolfe
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.01104

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
Cited by: 247
Author(s): Jessica L. Metcalf, Laura Wegener Parfrey, Antonio G. González, Christian L. Lauber, Dan Knights, Gail Ackermann, Gregory Humphrey, Matthew J. Gebert, Will Van Treuren, Donna Berg-Lyons, Kyle G. Keepers, Yan Guo, James W. Bullard, Noah Fierer, David Carter, Rob Knight
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.57051

Modeling transfer of vaginal microbiota from mother to infant in early life
Cited by: 30
Author(s): Martin Steen Mortensen, Morten Arendt Rasmussen, Jakob Stokholm, Asker Brejnrod, Christina Balle, Jonathan Thorsen, Karen A. Krogfelt, Hans Bisgaard, Søren J. Sørensen
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms20051232

Potential Functions of the Gastrointestinal Microbiome Inhabiting the Length of the Rat Digest Tract
Cited by: 4
Author(s): Dongyao Li, Haiqin Chen, Jianxin Zhao, Hao Zhang
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21072417

Transcriptomic Profiling in Fins of Atlantic Salmon Parasitized with Sea Lice: Evidence for an Early Imbalance Between Chalimus-Induced Immunomodulation and the Host’s Defense Response
Cited by: 18
Author(s): Navaneethaiyer Umasuthan, Xi Xue, Albert Caballero‐Solares, Surendra Kumar, JD Westcott, Z Chen, Stanko Škugor, Barbara F. Nowak, RG Taylor, ML Rise
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21103434

Unique Gut Microbiome Signatures Depict Diet-Versus Genetically Induced Obesity in Mice
Cited by: 17
Author(s): Ravinder Nagpal, Sidharth Prasad Mishra, Hariom Yadav
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0211328

SLC39A8 missense variant is associated with Crohn's disease but does not have a major impact on gut microbiome composition in healthy subjects
Cited by: 9
Author(s): Valerie Collij, Floris Imhann, Arnau Vich Vila, Jingyuan Fu, Gerard Dijkstra, Eleonora A. M. Festen, Michiel Voskuil, Mark J. Daly, Ramnik J. Xavier, Cisca Wijmenga, Alexandra Zhernakova, Rinse K. Weersma
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0018606

Aspects of Benthic Decapod Diversity and Distribution from Rocky Nearshore Habitat at Geographically Widely Dispersed Sites
Cited by: 13
Author(s): Gerhard Pohle, Katrin Iken, K.R. Clarke, Thomas J. Trott, Brenda Konar, Juan J. Cruz‐Motta, Melisa C. Wong, Lisandro Benedetti‐Cecchi, Angela Mead, Patricia Miloslavich, Nova Mieszkowska, Rebecca Milne, Laura Tamburello, Ann L. Knowlton, Edward Kimani, Yoshihisa Shirayama
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0254936

Dietary supplementation of alpha-lipoic acid mitigates the negative effects of heat stress in broilers
Cited by: 4
Author(s): S. S. Wasti, Nirvay Sah, Chin N. Lee, Rajesh Jha, Birendra Mishra
Software Mentions: 2
Published: over 3 years ago

10.3390/genes12020309

The Postmedieval Latvian Oral Microbiome in the Context of Modern Dental Calculus and Modern Dental Plaque Microbial Profiles
Cited by: 8
Author(s): Alisa Kazarina, Elīna Pētersone-Gordina, Jānis Ķimsis, Jevgenija Kuzmicka, Pawel Zayakin, Žans Griškjans, Guntis Gerhards, Renāte Ranka
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41396-018-0323-6

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
Cited by: 229
Author(s): Phillipe M. Rosado, D. L. Leite, Gabriela Duarte, Ricardo M. Chaloub, Guillaume Jospin, Ulisses Nunes da Rocha, J. Saraiva, Francisco Dini‐Andreote, Jonathan A. Eisen, David G. Bourne, Raquel S. Peixoto
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-016-1086-x

Tiny microbes, enormous impacts: what matters in gut microbiome studies?
Cited by: 112
Author(s): Justine W. Debelius, Se Jin Song, Yoshiki Vázquez-Baeza, Zhenjiang Xu, Antonio González, Rob Knight
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2015.00223

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities
Cited by: 56
Author(s): Markus V. Lindh, Daniela Figueroa, Johanna Sjöstedt, Federico Baltar, Daniel Lundin, Agneta Andersson, Catherine Legrand, Jarone Pinhassi
Software Mentions: 2
Published: over 9 years ago

10.1186/s13059-018-1501-6

Interaction between the microbiome and TP53 in human lung cancer
Cited by: 222
Author(s): K. Leigh Greathouse, James R. White, Ashley J. Vargas, Valery Bliskovsky, Jessica Beck, Natalia von Muhlinen, Eric C. Polley, Elise D. Bowman, Mohammed A. Khan, Ana I. Robles, Tomer Cooks, Bríd M. Ryan, R. Noah Padgett, Amiran Dzutsev, Giorgio Trinchieri, Marbin Pineda, Sven Bilke, Paul S. Meltzer, Alexis N. Hokenstad, Tricia M. Stickrod, Marina Walther-Antonio, Joshua P. Earl, Joshua Chang Mell, Jarosław Król, Sergey Balashov, Archana Bhat, Garth D. Ehrlich, Alex M. Valm, Clay Deming, Sean Conlan, Julia Oh, Julie Segre, Curtis C. Harris
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0208852

Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem
Cited by: 47
Author(s): Eneas Aguirre‐von‐Wobeser, Jorge Rocha, Lori R. Shapiro, Mayra de la Torre
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-019-1789-x

Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease
Cited by: 36
Author(s): Nicholas S Rhoades, Tasha Barr, Sara M Hendrickson, Kamm Prongay, Andrew J Haertel, Leanne Gill, Laura Garzel, Katrine Whiteson, Mark K. Slifka, Ilhem Messaoudi
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.6984

Changes in vegetation structure and composition of a lowland mire over a sixty‐five‐year interval
Cited by: 1
Author(s): Alexander Lovegrove, Adrian C. Newton, Paul M. Evans, Anita Díaz, Arthur C Newton, Lynn Davy, P. J. Newbould
Software Mentions: 2
Published: about 4 years ago

10.1002/ece3.4883

Environmental filtering predicts plant-community trait distribution and diversity: Kettle holes as models of meta-community systems
Cited by: 21
Author(s): Sissi Lozada‐Gobilard, Susanne Stang, Karin Pirhofer‐Walzl, Thomas Kalettka, Thilo Heinken, Boris Schröder, Jana A. Eccard, Jasmin Joshi
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.4111

Long‐term regeneration of a tropical plant community after sand mining
Cited by: 8
Author(s): Mário Luís Garbin, Flora Misaki, Poliana F. Ferreira, Karlo Gregório Guidoni‐Martins, Rayara B. Soares, Pierre Mariotte, Jerônimo Boelsums Barreto Sansevero, Patryck Gouvea Rocha, Ary G Silva
Software Mentions: 2
Published: over 6 years ago

10.3390/nu13020636

Gut Microbiota Bacterial Species Associated with Mediterranean Diet-Related Food Groups in a Northern Spanish Population
Cited by: 39
Author(s): Carles Rosés, Amelia Marti, Salvador Quintana, José Ignacio Riezu-Boj, Julian Martínez, Fermı́n I. Milagro, Anna Barceló
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13059-020-1933-7

Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads
Cited by: 13
Author(s): Sumaiya Nazeen, Yun William Yu, Bonnie Berger
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2019.00982

Green Infrastructure Design Influences Communities of Urban Soil Bacteria
Cited by: 34
Author(s): Jessica Joyner, Jordan Kerwin, Maha Deeb, George Lozefski, Bharath Prithiviraj, Anna Paltseva, John L. McLaughlin, Peter M. Groffman, Zhongqi Cheng, Theodore R. Muth
Software Mentions: 2
Published: over 5 years ago

10.1186/s13059-020-01999-0

The preceding root system drives the composition and function of the rhizosphere microbiome
Cited by: 42
Author(s): Yi Zhou, David Coventry, Vadakattu V. S. R. Gupta, David Fuentes, Andrew Merchant, Brent N. Kaiser, Jishun Li, Yanli Wei, Huan Liu, Yayu Wang, Shuheng Gan, Matthew D. Denton
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0208327

Bacterial microbiome of the chigger mite Leptotrombidium imphalum varies by life stage and infection with the scrub typhus pathogen Orientia tsutsugamushi
Cited by: 13
Author(s): Loganathan Ponnusamy, Alexandra C Willcox, R. Michael Roe, Silas A. Davidson, Piyada Linsuwanon, Anthony L. Schuster, Allen L. Richards, Steven R. Meshnick, Charles S. Apperson
Software Mentions: 2
Published: almost 6 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292