Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: PERMANOVA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA
Multivariate Analysis of Variance Based on Distances and
Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month
Papers Mentioning PERMANOVA 6,292
10.1126/sciadv.aaz2015
Mapping of host-parasite-microbiome interactions reveals metabolic determinants of tropism and tolerance in Chagas diseaseCited by: 34
Author(s): Ekram Hossain, Shugufta Khanam, Danya A. Dean, Chao‐Yi Wu, Sharon Lostracco-Johnson, Diane Thomas, Shelley S. Kane, Adwaita R. Parab, Karina Flores, Mitchelle Katemauswa, Camil Gosmanov, Susana Hayes, Y. Zhang, D. Li, Christine Woelfel-Monsivais, Krithivasan Sankaranarayanan, Laura-Isobel McCall
Software Mentions: 2
Published: over 4 years ago
10.1038/s41597-019-0077-7
Longitudinal 16S rRNA data derived from limb regenerative tissue samples of axolotl Ambystoma mexicanumCited by: 10
Author(s): Turan Demircan, Ayşe Elif İlhan, Guvanch Ovezmyradov, Gürkan Öztürk, Süleyman Yıldırım
Software Mentions: 2
Published: over 5 years ago
10.1038/s41597-020-00663-3
StableClim, continuous projections of climate stability from 21000 BP to 2100 CE at multiple spatial scalesCited by: 10
Author(s): Stuart C. Brown, T. M. L. Wigley, Bette L. Otto‐Bliesner, Damien A. Fordham
Software Mentions: 2
Published: about 4 years ago
10.1038/srep09316
Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystemCited by: 39
Author(s): Jinbo Xiong, Zhili He, Shaojun Shi, Angela D. Kent, Ye Deng, Liyou Wu, Joy D. Van Nostrand, Jizhong Zhou
Software Mentions: 2
Published: over 9 years ago
10.1038/srep12263
Water regime history drives responses of soil Namib Desert microbial communities to wetting eventsCited by: 48
Author(s): Aline Frossard, Jean‐Baptiste Ramond, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-017-06787-8
The Microbial Ecosystem Distinguishes Chronically Diseased Tissue from Adjacent Tissue in the Sigmoid Colon of Chronic, Recurrent Diverticulitis PatientsCited by: 39
Author(s): Kathleen M. Schieffer, Kate Sabey, Justin Wright, David R. Toole, Rebecca Drucker, Vasily Tokarev, Leonard Harris, Sue Deiling, Melanie A. Eshelman, John P. Hegarty, Gregory S. Yochum, Walter A. Koltun, Regina Lamendella, David B. Stewart
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-09073-9
Correlations of age and growth rate with microbiota composition in Atlantic cod (Gadus morhua) larvaeCited by: 10
Author(s): Ly T. T. Trinh, Ingrid Bakke, Ôlav Vadstein
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-09842-6
Characterization of cervico-vaginal microbiota in women developing persistent high-risk Human Papillomavirus infectionCited by: 154
Author(s): Monica Di Paola, Cristina Sani, Ann Maria Clemente, Anna Iossa, Eloisa Perissi, Giuseppe Castronovo, Michele Tanturli, Damaríz Rivero, Federico Cozzolino, Duccio Cavalieri, Francesca Carozzi, Carlotta De Filippo, Maria Gabriella Torcia
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-11423-6
Assessing the potential for raw meat to influence human colonization with Staphylococcus aureusCited by: 14
Author(s): Margaret Carrel, Zhao Chang, Dipendra Thapaliya, Patrick Bitterman, Ashley E. Kates, Blake Hanson, Tara C. Smith
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-11678-z
Impacts of aquaculture wastewater irrigation on soil microbial functional diversity and community structure in arid regionsCited by: 26
Author(s): Lijuan Chen, Qi Feng, Changsheng Li, Yongping Wei, Yan Zhao, Yongjiu Feng, Hang Zheng, Fengrui Li, Huiya Li
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-12163-3
Short chain fatty acids ameliorate immune-mediated uveitis partially by altering migration of lymphocytes from the intestineCited by: 102
Author(s): Yukiko Nakamura, Cathleen Janowitz, Christina Metea, Mark Asquith, Lisa Karstens, James T. Rosenbaum, Phoebe Lin
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-14075-8
Nutrient Loading Fosters Seagrass Productivity Under Ocean AcidificationCited by: 27
Author(s): Chiara Ravaglioli, Chiara Lauritano, María Cristina Buia, Elena Balestri, Antonella Capocchi, Debora Fontanini, G. Pardi, Laura Tamburello, Gabriele Procaccini, Fabio Bulleri
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-13249-8
Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)Cited by: 98
Author(s): Carola E. Dehler, Christopher J. Secombes, Samuel Martín
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-15291-y
Juvenile fish assemblages in temperate rocky reefs are shaped by the presence of macro-algae canopy and its three-dimensional structureCited by: 25
Author(s): Adrien Cheminée, Jérémy Pastor, Olivier Bianchimani, Pierre Thiriet, Enric Sala, Jean-Michel Cottalorda, Jean-Marie Dominici, Pierre Lejeune, Patrice Francour
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-14527-1
Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaeaCited by: 29
Author(s): Anna Synnøve Røstad Nordgård, Wenche Hennie Bergland, Ôlav Vadstein, В. А. Миронов, Rune Bakke, Kjetill Østgaard, Ingrid Bakke
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-15375-9
Evaluating the impact of domestication and captivity on the horse gut microbiomeCited by: 87
Author(s): Jessica L. Metcalf, Se Jin Song, James T. Morton, Sophie Weiss, Andaine Seguin-Orlando, Frédéric Joly, Claudia Feh, Pierre Taberlet, Éric Coissac, Amir Almasi‐Hashiani, Eske Willerslev, Rob Knight, Valerie J. McKenzie, Ludovic Orlando
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-17080-z
Legume crop rotation suppressed nitrifying microbial community in a sugarcane cropping soilCited by: 29
Author(s): Chanyarat Paungfoo‐Lonhienne, Weijin Wang, Yun Kit Yeoh, Neil V. Halpin
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-018-23052-8
Environmental DNA filtration techniques affect recovered biodiversityCited by: 72
Author(s): Markus Majaneva, Ola Håvard Diserud, Shannon H. C. Eagle, Erik Boström, Mehrdad Hajibabaei, Torbjørn Ekrem
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-23389-0
Cervical microbiome is altered in cervical intraepithelial neoplasia after loop electrosurgical excision procedure in chinaCited by: 27
Author(s): Hongwei Zhang, Jiaqi Lü, Yingying Lǚ, Qingqing Cai, Haiou Liu, Congjian Xu
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-23437-9
Lactobacillus paracasei CNCM I-3689 reduces vancomycin-resistant Enterococcus persistence and promotes Bacteroidetes resilience in the gut following antibiotic challengeCited by: 28
Author(s): Laureen Crouzet, Muriel Derrien, Claire Cherbuy, Sandra Plancade, Mélanie Foulon, Benjamin Chalin, Johan E. T. van Hylckama Vlieg, Gianfranco Grompone, Lionel Rigottier-Gois, Pascale Serror
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-24207-3
Impact of a vegan diet on the human salivary microbiotaCited by: 76
Author(s): Torben Hansen, Timo Kern, Emilie Glad Bak, Alireza Kashani, Kristine H. Allin, Trine Nielsen, Torben Hansen, Oluf Pedersen
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-24043-5
Dietary supplementation with flaxseed meal and oat hulls modulates intestinal histomorphometric characteristics, digesta- and mucosa-associated microbiota in pigsCited by: 21
Author(s): Saymore Petros Ndou, Hein Min Tun, E. Kiarie, M. C. Walsh, Ehsan Khafipour, C. M. Nyachoti
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-28126-1
A taxonomic signature of obesity in a large study of American adultsCited by: 165
Author(s): Brandilyn A. Peters, Jean A. Shapiro, Timothy R. Church, George Miller, Chau Trinh‐Shevrin, Elizabeth Yuen, Charles Friedlander, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-27980-3
HPV infection and bacterial microbiota in the placenta, uterine cervix and oral mucosaCited by: 53
Author(s): Heidi Tuominen, Samulii Rautava, Stina Syrjänen, María Carmen Collado, Jaana Rautava
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-28150-1
Litter quality drives the differentiation of microbial communities in the litter horizon across an alpine treeline ecotone in the eastern Tibetan PlateauCited by: 19
Author(s): Haifeng Zheng, Yamei Chen, Yang Liu, Jian Zhang, Weiru Yang, Yang Lin, Hongjie Li, Lifeng Wang, Fuzhong Wu, Li Guo
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-28448-0
Development of outbred CD1 mouse colonies with distinct standardized gut microbiota profiles for use in complex microbiota targeted studiesCited by: 28
Author(s): Marcia L. Hart, Aaron C. Ericsson, Kevin C K Lloyd, Kristin N Grimsrud, Allison R. Rogala, Virginia Godfrey, Judith N. Nielsen, Craig L. Franklin
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29173-4
Parkinson’s disease and bacteriophages as its overlooked contributorsCited by: 88
Author(s): George Tetz, Stuart M. Brown, Yuhan Hao, Victor Tetz
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29088-0
Endemic fish species structuring oceanic intertidal reef assemblagesCited by: 15
Author(s): Ryan Andrades, José Amorim Reis‐Filho, Raphael Mariano Macieira, Tommaso Giarrizzo, Jean‐Christophe Joyeux
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29039-9
Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific OceanCited by: 45
Author(s): Hisashi Endo, Hiroyuki Ogata, Koji Suzuki
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29346-1
Vineyard under-vine floor management alters soil microbial composition, while the fruit microbiome shows no corresponding shiftsCited by: 50
Author(s): Ming-Yi Chou, Justine E. Vanden Heuvel, Terrence H. Bell, Kevin Panke-Buisse, Jenny Kao‐Kniffin
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29431-5
Faunal activity rhythms influencing early community succession of an implanted whale carcass offshore Sagami Bay, JapanCited by: 24
Author(s): Jacopo Aguzzi, Emanuela Fanelli, Tiziana Ciuffardi, Antonio Schirone, Fabio C. De Leo, C. Doya, Masaru Kawato, Masaru Miyazaki, Yasuo Furushima, Corrado Costa, Yoshihiro Fujiwara
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29793-w
Nasal microbiota clusters associate with inflammatory response, viral load, and symptom severity in experimental rhinovirus challengeCited by: 48
Author(s): Markus J. Lehtinen, Ashley A. Hibberd, Sofia Männikkö, Nicolas Yeung, Tommi Kauko, Sofia D. Forssten, Liisa Lehtoranta, Sampo J. Lahtinen, Buffy Stahl, Anna Lyra, Ronald B. Turner
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-62919-7
Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systemsCited by: 22
Author(s): Wenjun Tan, Junman Wang, Wenqing Bai, Jiejun Qi, Weimin Chen
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63190-6
Influence of oil, dispersant, and pressure on microbial communities from the Gulf of MexicoCited by: 12
Author(s): Nuttapol Noirungsee, Steffen Hackbusch, Juan Viamonte, Paul Bubenheim, Andreas Liese, Rudolf Müller
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-64227-6
Long-term fertilization alters soil properties and fungal community composition in fluvo-aquic soil of the North China PlainCited by: 42
Author(s): Yanchen Wen, Haiyan Li, Lin Zhifang, Bingqiang Zhao, Zhan‐Bin Sun, Liang Yuan, Jiukai Xu, Yanqing Li
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-64296-7
Maternal H. pylori is associated with differential fecal microbiota in infants born by vaginal deliveryCited by: 2
Author(s): Cherie Hernández, Hakdong Shin, Paula Troncoso, Macarena Vera, Andrea Villagrán, Selena M. Rodriguez-Rivera, Mauricio Ortiz, Carolina Serrano, Arturo Borzutzky, Maria Gloria Domínguez-Bello, Paul Harris
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-64453-y
Soil invertebrate diversity loss and functional changes in temperate forest soils replaced by exotic pine plantationsCited by: 22
Author(s): Camila Cifuentes-Croquevielle, Daniel E. Stanton, Juan J. Armestó
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-64858-9
Environmental DNA can act as a biodiversity barometer of anthropogenic pressures in coastal ecosystemsCited by: 55
Author(s): Joseph D. DiBattista, James Davis Reimer, Michael Stat, Giovanni Diego Masucci, Piera Biondi, Maarten De Brauwer, Shaun P. Wilkinson, Anthony A. Chariton, Michael Bunce
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-65444-9
Priming for welfare: gut microbiota is associated with equitation conditions and behavior in horse athletesCited by: 30
Author(s): Núria Mach, Alice Ruet, Allison Clark, David Bars-Cortina, Yuliaxis Ramayo-Caldas, Elisa Crisci, Samuel Pennarun, Sophie Dhorne–Pollet, Aline Foury, Marie‐Pierre Moisan, Léa Lansade
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-65314-4
Metabolomic effects of the colonization of Medicago truncatula by the facultative endophyte Arthrobacter agilis UMCV2 in a foliar inoculation systemCited by: 13
Author(s): Arturo Ramírez-Ordorica, Eduardo Valencia-Cantero, Idolina Flores-Cortez, María Teresa Carrillo-Rayas, Ma. Isabel Cristina Elizarraraz-Anaya, Josaphat Miguel Montero-Vargas, Robert Winkler, Lourdes Macías‐Rodríguez
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-65740-4
Host genotype and exercise exhibit species-level selection for members of the gut bacterial communities in the mouse digestive systemCited by: 11
Author(s): Robert A. Dowden, Lora R. McGuinness, Paul Wisniewski, Sara C. Campbell, John J. Guers, Marko Oydanich, Stephen F. Vatner, Max M. Häggblom, Lee J. Kerkhof
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-65891-4
Comparative assessment of faecal microbial composition and metabonome of swine, farmers and human controlCited by: 12
Author(s): Shiang Chiet Tan, Chun Wie Chong, Ivan Kok Seng Yap, Kwai Lin Thong, Cindy Shuan Ju Teh
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-66056-z
The microbial biogeography of the gastrointestinal tract of preterm and term lambsCited by: 8
Author(s): Clara Yieh Lin Chong, Tommi Vatanen, Mark Oliver, Frank H. Bloomfield, Justin M. O’Sullivan
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-66598-2
Revealing links between gut microbiome and its fungal community in Type 2 Diabetes Mellitus among Emirati subjects: A pilot studyCited by: 31
Author(s): Mohammad Tahseen Al Bataineh, Nihar Ranjan Dash, Pierre Bel Lassen, Bayan Hassan Banimfreg, Aml Mohamed Nada, Eugeni Belda, Karine Clément
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-66607-4
Taxonomic and Functional Differences in Cervical Microbiome Associated with Cervical Cancer DevelopmentCited by: 31
Author(s): Charles Nkufi Tango, Seung‐Woo Seo, Minji Kwon, Dong-Ock Lee, Ha Kyun Chang, Mi Kyung Kim
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-66093-8
Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphereCited by: 7
Author(s): Vanessa Oliveira, Patrícia Martins, Bruna Marques, Daniel F. R. Cleary, Ana I. Lillebø, Ricardo Calado
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-67443-2
Bladder cancer-related microbiota: examining differences in urine and tissue samplesCited by: 57
Author(s): Bassel Mansour, Ádám Monyók, Nóra Makra, Márió Gajdács, István Vadnay, Balázs Ligeti, János Juhász, Dóra Szabó, Eszter Ostorházi
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-68386-4
Seasonal and environmental variation in volatile emissions of the New Zealand native plant Leptospermum scoparium in weed-invaded and non-invaded sitesCited by: 10
Author(s): Evans Effah, D. Paul Barrett, Paul G. Peterson, Murray A. Potter, Jarmo K. Holopainen, Andrea Clavijo McCormick
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-69295-2
NOD1 deficiency promotes an imbalance of thyroid hormones and microbiota homeostasis in mice fed high fat dietCited by: 13
Author(s): Silvia González-Ramos, Marta Paz-García, Victoria Fernández-García, Kevin J. Portune, Emilio Felino Acosta-Medina, Yolanda Sanz, Antonio Castrillo, Paloma Martı́n-Sanz, Marı́a Jesús Obregón, Lisardo Boscá
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-70307-4
Monitoring of biofouling communities in a Portuguese port using a combined morphological and metabarcoding approachCited by: 19
Author(s): Joana Azevedo, Jorge T. Antunes, André M. Machado, Vítor Vasconcelos, Pedro N. Leão, Elsa Froufe
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-70141-8
Influence of 16S rRNA target region on the outcome of microbiome studies in soil and saliva samplesCited by: 20
Author(s): Ana Soriano‐Lerma, Virginia Pérez-Carrasco, M. Sánchez‐Marañón, Matilde Ortiz-González, Victoria Sánchez-Martín, J Gijón, José María Navarro-Marí, José A. García‐Salcedo, Miguel Soriano
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-71422-y
Ethnic variation of oral microbiota in childrenCited by: 13
Author(s): Thyagaseely Sheela Premaraj, Raven Vella, Jennifer Chung, Qingqi Lin, Hunter Panier, Kori Underwood, Sundaralingam Premaraj, Yanjiao Zhou
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72011-9
Influence of host genetics in shaping the rumen bacterial community in beef cattleCited by: 31
Author(s): Waseem Abbas, Jeremy Howard, Henry A. Paz, Kristin E Hales, John W. Wells, L. A. Kuehn, Galen E. Erickson, Matthew L Spangler, Samodha C. Fernando
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72032-4
Host phylogeny and life history stage shape the gut microbiome in dwarf (Kogia sima) and pygmy (Kogia breviceps) sperm whalesCited by: 4
Author(s): Elizabeth R Denison, Ryan G. Rhodes, William A. McLellan, D. Ann Pabst, Patrick M. Erwin
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-71458-0
Investigation into the effect of divergent feed efficiency phenotype on the bovine rumen microbiota across diet and breedCited by: 18
Author(s): Emily McGovern, M. McGee, C.J. Byrne, David A. Kenny, A. K. Kelly, Sinéad M. Waters
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72286-y
Contrasting microbiota profiles observed in children carrying either Blastocystis spp. or the commensal amoebas Entamoeba coli or Endolimax nanaCited by: 18
Author(s): Juan F. Alzate, Miguel Toro-Londoño, Felipe Cabarcas, Gisela María García-Montoya, Ana Luz Galván-Díaz
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72679-z
Edaphic factors and plants influence denitrification in soils from a long-term arable experimentCited by: 1
Author(s): Ian M. Clark, Qingling Fu, Maïder Abadie, E. R. Dixon, Aimeric Blaud, P. R. Hirsch
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-73085-1
Distinct lung microbiota associate with HIV-associated chronic lung disease in childrenCited by: 8
Author(s): Sudha Bhadriraju, Douglas Fadrosh, Meera K. Shenoy, David L. Lin, Kole Lynch, Kathryn McCauley, Rashida A Ferrand, Edith Majonga, Grace McHugh, Laurence Huang, Susan V. Lynch, John Metcalfe
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-74122-9
The influences of low protein diet on the intestinal microbiota of miceCited by: 18
Author(s): Hiroaki Masuoka, Wataru Suda, Eriko Tomitsuka, Chie Shindo, Lena Takayasu, Paul F. Horwood, Andrew R. Greenhill, Masahira Hattori, Masahiro Umezaki, Kazuhiro Hirayama
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-74193-8
Different types of agricultural land use drive distinct soil bacterial communitiesCited by: 15
Author(s): Shin Ae Lee, Jeong Myeong Kim, Yiseul Kim, Jae–Ho Joa, Seong-Soo Kang, Jae-Hyung Ahn, Min‐Cheol Kim, Jaekyeong Song, Hang-Yeon Weon
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-74678-6
Risk factors for type 1 diabetes, including environmental, behavioural and gut microbial factors: a case–control studyCited by: 16
Author(s): Deborah Traversi, Ivana Rabbone, Giacomo Scaioli, Camilla Vallini, Giulia Carletto, Irene Racca, Ugo Ala, Marilena Durazzo, Alessandro Collo, Arianna Ferro, Deborah Carrera, Silvia Savastio, Francesco Cadario, Roberta Siliquini, Fránco Cerutti
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-75786-z
Desacetyl-α-MSH and α-MSH have sex specific interactions with diet to influence mouse gut morphology, metabolites and microbiotaCited by: 2
Author(s): Bo Sun, Tommi Vatanen, Thilini N. Jayasinghe, Elizabeth McKenzie, Rinki Murphy, Justin M. O’Sullivan
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-76072-8
Effect of the similarity of gut microbiota composition between donor and recipient on graft function after living donor kidney transplantationCited by: 7
Author(s): Ji Eun Kim, Hyo Eun Kim, Hyun-Jeong Cho, Ji In Park, Min Jung Kwak, Byung Yong Kim, Seung Hee Yang, Jung Pyo Lee, Yon Su Kim, Kwon Wook Joo, Yon Su Kim, Bong Soo Kim, Hajeong Lee
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-76590-5
Seasonal impact of grazing, viral mortality, resource availability and light on the group-specific growth rates of coastal Mediterranean bacterioplanktonCited by: 9
Author(s): Olga Sánchez, Isabel Ferrera, Isabel Mabrito, Carlota R. Gazulla, Marta Sebastián, Adrià Auladell, Carolina Marín-Vindas, Clara Cardelús, Isabel Sanz-Sáez, Massimo C. Pernice, Cèlia Marrasé, M. Montserrat Sala, Josep M. Gasol
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-77313-6
Feed additives for the control of post-weaning Streptococcus suis disease and the effect on the faecal and nasal microbiotaCited by: 13
Author(s): Florencia Correa‐Fiz, Carlos Neila‐Ibáñez, Sergio López-Soria, Sebastián Napp, Blanca Edelia González Martínez, Laia Sobrevia, Simon Tibble, Virginia Aragón, Lourdes Migura-García
Software Mentions: 2
Published: about 4 years ago
10.1128/mBio.02336-20
The Native Microbiome is Crucial for Offspring Generation and Fitness of <i>Aurelia aurita</i>Cited by: 21
Author(s): Nancy Weiland‐Bräuer, Nicole Pinnow, Daniela Langfeldt, Anna Krystyna Roik, Simon Güllert, Cynthia Maria Chibani, Thorsten B.H. Reusch, Ruth A. Schmitz
Software Mentions: 2
Published: almost 4 years ago
10.1128/mBio.00294-21
Effect of HIV/HAART and Other Clinical Variables on the Oral Mycobiome Using Multivariate AnalysesCited by: 13
Author(s): Paul L. Fidel, Zach A. Thompson, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Laura Cook, Shahr B. Hashmi, Daniel J. Lisko, Chiranjit Mukherjee, José Antonio Vázquez, Michael E. Hagensee, Ann L. Griffen, Eugene J. Leys, Clifford J. Beall
Software Mentions: 2
Published: over 3 years ago
10.1128/mBio.01777-21
Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract MicrobiomeCited by: 66
Author(s): Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G Cobián-Güemes, Madeline S Merlino, Louis J. Taylor, Abigail Glascock, Kyle Bittinger, Ceylan Tanes, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Shantan Reddy, Amy E. Baxter, Josephine R. Giles, Derek A. Oldridge, Nuala J. Meyer, E. John Wherry, John E. McGinniss, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 2
Published: over 3 years ago
10.1128/mSphere.00327-17
The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy YoungCited by: 130
Author(s): Gaorui Bian, Gregory B. Gloor, Aihua Gong, Changsheng Jia, Wei Zhang, Jun Hu, Hong Zhang, Yumei Zhang, Zhiyong Zhou, Jiangao Zhang, Jeremy P. Burton, Gregor Reid, Yongliang Xiao, Qiang Zeng, Kaiping Yang, Jiangang Li
Software Mentions: 2
Published: about 7 years ago
10.1128/mSphere.00366-17
Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the AmazonCited by: 8
Author(s): Bruno S. de O. Silva, Felipe H. Coutinho, Gustavo Bueno Gregoracci, Luciana Leomil, Louisi Souza de Oliveira, Adriana M. Fróes, Diogo A. Tschoeke, Ana Carolina Soares, Anderson de Souza Cabral, Nicholas D. Ward, Jeffrey E. Richey, Alex V. Krusche, Patricia L. Yager, Carlos Eduardo de Rezende, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 2
Published: about 7 years ago
10.1128/mSphereDirect.00527-17
Subgingival Microbiome Colonization and Cytokine Production during Early Dental Implant HealingCited by: 12
Author(s): Jeffrey B. Payne, Paul G. Johnson, Car Reen Kok, João Carlos Gomes-Neto, Amanda E. Ramer‐Tait, Marian J. Schmid, Robert W. Hutkins
Software Mentions: 2
Published: almost 7 years ago
10.1128/mSphere.00418-17
Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid FishCited by: 48
Author(s): Anti Vasemägi, Marko Visse, Veljo Kisand
Software Mentions: 2
Published: almost 7 years ago
10.1128/mSphere.00229-18
Potential Mechanism of Detoxification of Cyanide Compounds by Gut Microbiomes of Bamboo-Eating PandasCited by: 49
Author(s): Lifeng Zhu, Yang Zhang, Ru Yao, Liangliang Xu, Hua Chen, Xun Gu, Tonggui Wu, Xiangdong Yang
Software Mentions: 2
Published: over 6 years ago
10.1128/mSphere.00679-18
Comparison of Subtyping Approaches and the Underlying Drivers of Microbial Signatures for Chronic RhinosinusitisCited by: 16
Author(s): Kristi Biswas, Raewyn Cavubati, Shan Gunaratna, Michael Hoggard, Sharon Waldvogel-Thurlow, Jiwon Hong, Kevin Chang, Brett Wagner Mackenzie, Michael W. Taylor, Richard Douglas
Software Mentions: 2
Published: almost 6 years ago
10.1128/mSphere.00446-19
Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of LifeCited by: 4
Author(s): T. M. Royalty, Andrew D. Steen
Software Mentions: 2
Published: over 5 years ago
10.1128/mSphere.00991-20
Effects of Seasonal Anoxia on the Microbial Community Structure in Demosponges in a Marine Lake in Lough Hyne, IrelandCited by: 4
Author(s): Astrid Schuster, Brian Strehlow, Lisa K. Eckford-Soper, Rob McAllen, Donald E. Canfield
Software Mentions: 2
Published: almost 4 years ago
10.1128/mSphere.00208-21
Cyanophage Diversity and Community Structure in Dead Zone SedimentsCited by: 8
Author(s): Elias Broman, Karin Holmfeldt, Stefano Bonaglia, Per Hall, Francisco J. A. Nascimento
Software Mentions: 2
Published: over 3 years ago
10.1128/mSphere.00467-21
Seasonal Dietary Shifts Alter the Gut Microbiota of Avivorous Bats: Implication for Adaptation to Energy Harvest and Nutritional UtilizationCited by: 9
Author(s): Lixin Gong, Boyu Liu, Hui Wu, Feng Jiang, Tinglei Jiang
Software Mentions: 2
Published: over 3 years ago
10.1128/mSystems.00166-16
Uncovering the Horseshoe Effect in Microbial AnalysesCited by: 58
Author(s): James T. Morton, Liam Toran, Anna Edlund, Jessica L. Metcalf, Christian L. Lauber, Rob Knight
Software Mentions: 2
Published: almost 8 years ago
10.1128/mSystems.00004-17
Meta-analysis To Define a Core Microbiota in the Swine GutCited by: 197
Author(s): Devin B. Holman, Brian W. Brunelle, Julian Trachsel, Heather K. Allen
Software Mentions: 2
Published: over 7 years ago
10.1128/mSystems.00047-17
Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in MiceCited by: 16
Author(s): Koji Yasuda, Tiffany Y. Hsu, Carey Ann Gallini, Lauren J. Mclver, Emma Schwager, Andy Shi, Casey DuLong, Randall Schwager, Galeb Abu-Ali, Eric A. Franzosa, Wendy S. Garrett, Curtis Huttenhower, Xochitl C. Morgan
Software Mentions: 2
Published: over 7 years ago
10.1128/mSystems.00036-17
Development of Inflammatory Bowel Disease Is Linked to a Longitudinal Restructuring of the Gut Metagenome in MiceCited by: 40
Author(s): Thomas J. Sharpton, Svetlana Lyalina, Julie Luong, Joey Pham, Emily M. Deal, Courtney R. Armour, Christopher A. Gaulke, Shomyseh Sanjabi, Katherine S. Pollard
Software Mentions: 2
Published: about 7 years ago
10.1128/mSystems.00129-17
A Synthetic Community System for Probing Microbial Interactions Driven by ExometabolitesCited by: 55
Author(s): John L. Chodkowski, Ashley Shade
Software Mentions: 2
Published: almost 7 years ago
10.1128/mSystems.00214-17
Linking Nitrogen Load to the Structure and Function of Wetland Soil and Rhizosphere Microbial CommunitiesCited by: 50
Author(s): Eric R. Hester, Sarah F. Harpenslager, J.M.H. van Diggelen, Leon L. Lamers, Mike S. M. Jetten, Claudia Lüke, Sebastian Lücker, Cornelia U. Welte
Software Mentions: 2
Published: almost 7 years ago
10.1128/mSystems.00020-18
Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and MetabolomeCited by: 86
Author(s): Anupriya Tripathi, Alexey V. Melnik, Jin Xue, Orit Poulsen, Michael J. Meehan, Gregory Humphrey, Lingjing Jiang, Gail Ackermann, Daniel McDonald, Dan Zhou, Rob Knight, Pieter C. Dorrestein, Gabriel G. Haddad
Software Mentions: 2
Published: over 6 years ago
10.1128/mSystems.00113-18
Microbial Functional Responses to Cholesterol Catabolism in Denitrifying SludgeCited by: 13
Author(s): Sean Ting Shyang Wei, Yu Wei Wu, Tzong‐Huei Lee, Yi Huang, Cheng Yu Yang, Yi Lung Chen, Yin-Ru Chiang
Software Mentions: 2
Published: about 6 years ago
10.1128/mSystems.00261-18
Feed Restriction Modifies Intestinal Microbiota-Host Mucosal Networking in Chickens Divergent in Residual Feed IntakeCited by: 26
Author(s): Barbara U. Metzler‐Zebeli, Sina-Catherine Siegerstetter, Elizabeth Magowan, Peadar G. Lawlor, Renée M. Petri, Niamh E. O ́Connell, Qendrim Zebeli
Software Mentions: 2
Published: almost 6 years ago
10.1128/mSystems.00169-18
The Adenoids but Not the Palatine Tonsils Serve as a Reservoir for Bacteria Associated with Secretory Otitis Media in Small ChildrenCited by: 19
Author(s): Helena Fagö-Olsen, Laura Marie Dines, Christian Hjort Sørensen, A. S. Jensen
Software Mentions: 2
Published: almost 6 years ago
10.1128/mSystems.00271-18
Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota ProfilingCited by: 99
Author(s): Zigui Chen, Pak Chun Hui, Michael K. Hui, Yun Kit Yeoh, Pak-Kin Wong, Max Kam-Kwan Chan, Martin Cs Wong, Siew C. Ng, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 2
Published: almost 6 years ago
10.1128/mSystems.00209-19
A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight HumansCited by: 56
Author(s): Alfonso Benı́tez-Páez, Louise Kjølbæk, Eva M. Gómez del Pulgar, Lena K. Brahe, Arne Astrup, Silke Matysik, Hans-Frieder Schött, Sabrina Krautbauer, Gerhard Liebisch, Joanna Boberska, Sandrine P. Claus, Simone Rampelli, Patrizia Brigidi, Lesli H. Larsen, Yolanda Sanz
Software Mentions: 2
Published: over 5 years ago
10.1128/mSystems.00148-19
Multipartner Symbiosis across Biological Domains: Looking at the Eukaryotic Associations from a Microbial PerspectiveCited by: 6
Author(s): Marta Turon, María Jesús Uriz, Daniel Martín
Software Mentions: 2
Published: over 5 years ago
10.1128/mSystems.00375-19
Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic FibrosisCited by: 23
Author(s): Alexey V. Melnik, Yoshiki Vázquez-Baeza, Alexander A. Aksenov, Embriette R. Hyde, Andrew C. McAvoy, Mingxun Wang, Ricardo R. da Silva, Ivan Protsyuk, Jason V. Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A. Quinn, Richard L. Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S. Brouha, Nuno Bandeira, Grace Lin, Forest Rohwer, Douglas Conrad, Theodore Alexandrov, Rob Knight, Pieter C. Dorrestein, Neha Garg
Software Mentions: 2
Published: about 5 years ago
10.1128/mSystems.00374-19
Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental ChangesCited by: 12
Author(s): Ximei Zhang, Eric R. Johnston, Yaosheng Wang, Qiang Yu, Dashuan Tian, Zhiping Wang, Yanqing Zhang, Daozhi Gong, Chun Luo, Wei Liu, Junjie Yang, Xingguo Han
Software Mentions: 2
Published: about 5 years ago
10.1128/mSystems.00348-19
Timing of Calorie Restriction in Mice Impacts Host Metabolic Phenotype with Correlative Changes in Gut MicrobiotaCited by: 26
Author(s): Liying Zhang, Xinhe Xue, Rui Zhai, Xin Yang, Hui Li, Liping Zhao, Chenhong Zhang
Software Mentions: 2
Published: almost 5 years ago
10.1128/mSystems.00055-20
Mucosal Microbiota and Metabolome along the Intestinal Tract Reveal a Location-Specific RelationshipCited by: 23
Author(s): Ce Yuan, Melanie L. Graham, Christopher Staley, Subbaya Subramanian
Software Mentions: 2
Published: over 4 years ago
10.1128/mSystems.00901-19
Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and MetabolomeCited by: 68
Author(s): Bryn C. Taylor, Franck Lejzerowicz, Marion Poirel, Justin P. Shaffer, Lingjing Jiang, Alexander A. Aksenov, Nicole S. Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller‐Montgomery, Pieter C. Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Software Mentions: 2
Published: over 4 years ago
10.1128/mSystems.00626-20
The Behavior of Amphibians Shapes Their Symbiotic MicrobiomesCited by: 17
Author(s): Liangliang Xu, Mengmeng Xiang, Wei Zhu, Mengjie Zhang, Hua Chen, Jin Huang, Youhua Chen, Qing Chang, Jianping Jiang, Lifeng Zhu
Software Mentions: 2
Published: over 4 years ago
10.1128/mSystems.00782-20
Marine Sediments Hold an Untapped Potential for Novel Taxonomic and Bioactive Bacterial DiversityCited by: 21
Author(s): Pernille Kjersgaard Bech, Klaus Lars Lysdal, Lone Gram, Mikkel Bentzon-Tilia, Mikael Lenz Strube
Software Mentions: 2
Published: about 4 years ago
10.1128/mSystems.00542-20
Phages versus Antibiotics To Treat Infected Diabetic Wounds in a Mouse Model: a Microbiological and Microbiotic EvaluationCited by: 12
Author(s): Jean‐François Huon, Emmanuel Montassier, Anne-Gaëlle Leroy, Matthieu Grégoire, Marie-Anne Vibet, Jocelyne Caillon, David Boutoille, Dominique Navas
Software Mentions: 2
Published: almost 4 years ago
10.1128/mSystems.01249-20
Insights into the Cultured Bacterial Fraction of CoralsCited by: 40
Author(s): Michael Sweet, Helena Villela, Tina Keller‐Costa, Rodrigo Costa, Stefano Romano, David G. Bourne, Anny Cárdenas, Megan J. Huggett, Allison H. Kerwin, Felicity Kuek, Mónica Medina, Julie Meyer, Moritz Müller, F. Joseph Pollock, Michael S. Rappé, Mathieu G. Séré, Koty Sharp, Christian R. Voolstra, Nathan J Zaccardi, Maren Ziegler, Raquel S. Peixoto
Software Mentions: 2
Published: over 3 years ago