cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1155/2020/6639118

Rhizobacteria Communities of Phytoremediation Plant Species in Petroleum Hydrocarbon Contaminated Soil of the Sudd Ecosystem, South Sudan
Cited by: 9
Author(s): J. A. Ruley, John Baptist Tumuhairwe, Alice Amoding, Ola Tveitereid Westengen, Hilde Vinje
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph16081375

Bioaerosols Play a Major Role in the Nasopharyngeal Microbiota Content in Agricultural Environment
Cited by: 25
Author(s): Hamza Mbareche, Marc Veillette, Jonathan Pilote, Valérie Létourneau, Caroline Duchaine
Software Mentions: 2
Published: over 7 years ago

10.3390/ijerph16132335

Major Differences in the Diversity of Mycobiomes Associated with Wheat Processing and Domestic Environments: Significant Findings from High-Throughput Sequencing of Fungal Barcode ITS1
Cited by: 5
Author(s): Erika Yashiro, Dessislava Savova-Bianchi, Hélène Niculita‐Hirzel
Software Mentions: 2
Published: about 7 years ago

10.3390/ijerph16214160

Indoor Microbiome and Antibiotic Resistance on Floor Surfaces: An Exploratory Study in Three Different Building Types
Cited by: 15
Author(s): Mridula Gupta, Seungjun Lee, Michael Bisesi, Jiyoung Lee
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijerph17197081

Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijerph17249157

The Response of Arbuscular Mycorrhizal Fungal Communities to the Soil Environment of Underground Mining Subsidence Area in Northwest China
Cited by: 3
Author(s): Hai Huang, Jing Guo, Yuxiu Zhang
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph18168254

Soy and Frequent Dairy Consumption with Subsequent Equol Production Reveals Decreased Gut Health in a Cohort of Healthy Puerto Rican Women
Cited by: 3
Author(s): Mercedes Lacourt-Ventura, Brayan Vilanova-Cuevas, Delmarie Rivera-Rodríguez, Raysa Rosario-Acevedo, Christine Miranda, Gerónimo Maldonado-Martínez, Johanna Maysonet, Darlene Vargas, Yelitza Ruiz, Robert Hunter-Mellado, Luis A. Cubano, Suranganie Dharmawardhane, Johanna W. Lampe, Abel Baerga‐Ortiz, Filipa Godoy-Vitorino, Michelle M. Martínez-Montemayor
Software Mentions: 2
Published: about 5 years ago

10.1007/s00442-020-04668-y

Regulation of fatty acid composition related to ontogenetic changes and niche differentiation of a common aquatic consumer
Cited by: 17
Author(s): Fernando Chaguaceda, Peter Eklöv, Kristin Scharnweber
Software Mentions: 2
Published: over 6 years ago

10.1007/s00442-020-04746-1

Functional diversity of habitat formers declines scale-dependently across an environmental stress gradient
Cited by: 12
Author(s): Laura Cappelatti, Alizée R. L. Mauffrey, John N. Griffin
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00442-021-04865-3

Plant species- and stage-specific differences in microbial decay of mangrove leaf litter: the older the better?
Cited by: 18
Author(s): Novia Arinda Pradisty, Ahmad Aldrie Amir, Martin Zimmer
Software Mentions: 2
Published: over 5 years ago

10.1002/jia2.25628

Efficacy of silk fibroin biomaterial vehicle for in vivo mucosal delivery of Griffithsin and protection against HIV and SHIV infection ex vivo
Cited by: 13
Author(s): Katti R. Crakes, Carolina Herrera, John D. Morgan, Katie J. Olstad, Ann J. Hessell, Paul Ziprin, Patricia J. LiWang, Satya Dandekar
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.61644

The diversity and function of sourdough starter microbiomes
Cited by: 66
Author(s): Elizabeth A. Landis, Angela M. Oliverio, Erin A. McKenney, Lauren M. Nichols, Nicole Kfoury, Megan N. Biango-Daniels, Leonora Shell, Anne A. Madden, Lori R. Shapiro, Shravya Sakunala, Kinsey Drake, Albert Robbat, Matthew Booker, Robert R. Dunn, Noah Fierer, Benjamin E. Wolfe
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.01104

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
Cited by: 247
Author(s): Jessica L. Metcalf, Laura Wegener Parfrey, Antonio G. González, Christian L. Lauber, Dan Knights, Gail Ackermann, Gregory Humphrey, Matthew J. Gebert, Will Van Treuren, Donna Berg-Lyons, Kyle G. Keepers, Yan Guo, James W. Bullard, Noah Fierer, David Carter, Rob Knight
Software Mentions: 2
Published: almost 13 years ago

10.7554/eLife.57051

Modeling transfer of vaginal microbiota from mother to infant in early life
Cited by: 30
Author(s): Martin Steen Mortensen, Morten Arendt Rasmussen, Jakob Stokholm, Asker Brejnrod, Christina Balle, Jonathan Thorsen, Karen A. Krogfelt, Hans Bisgaard, Søren J. Sørensen
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20051232

Potential Functions of the Gastrointestinal Microbiome Inhabiting the Length of the Rat Digest Tract
Cited by: 4
Author(s): Dongyao Li, Haiqin Chen, Jianxin Zhao, Hao Zhang
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms21072417

Transcriptomic Profiling in Fins of Atlantic Salmon Parasitized with Sea Lice: Evidence for an Early Imbalance Between Chalimus-Induced Immunomodulation and the Host’s Defense Response
Cited by: 18
Author(s): Navaneethaiyer Umasuthan, Xi Xue, Albert Caballero‐Solares, Surendra Kumar, JD Westcott, Z Chen, Stanko Škugor, Barbara F. Nowak, RG Taylor, ML Rise
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21103434

Unique Gut Microbiome Signatures Depict Diet-Versus Genetically Induced Obesity in Mice
Cited by: 17
Author(s): Ravinder Nagpal, Sidharth Prasad Mishra, Hariom Yadav
Software Mentions: 2
Published: over 6 years ago

10.3390/nu12113408

The Effects of Non-Nutritive Artificial Sweeteners, Aspartame and Sucralose, on the Gut Microbiome in Healthy Adults: Secondary Outcomes of a Randomized Double-Blinded Crossover Clinical Trial
Cited by: 43
Author(s): Samar Y Ahmad, James K. Friel, Dylan MacKay
Software Mentions: 2
Published: almost 6 years ago

10.3390/nu13072446

Administration with Quinoa Protein Reduces the Blood Pressure in Spontaneously Hypertensive Rats and Modifies the Fecal Microbiota
Cited by: 18
Author(s): Huimin Guo, Yuqiong Hao, Xin Fan, Aurore Richel, Nadia Everaert, Xiushi Yang
Software Mentions: 2
Published: about 5 years ago

10.3390/nu12113225

Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats
Cited by: 24
Author(s): Sanna Lensu, Raghunath Pariyani, Elina Mäkinen, Baoru Yang, Wisam Saleem, Eveliina Munukka, Maarit Lehti, Anastasiia Driuchina, Jere Lindén, Marja Tiirola, Leo Lahti, Satu Pekkala
Software Mentions: 2
Published: almost 6 years ago

10.3390/nu12113451

Maternal Linoleic Acid Overconsumption Alters Offspring Gut and Adipose Tissue Homeostasis in Young but Not Older Adult Rats
Cited by: 3
Author(s): Justine Marchix, Charlène Alain, Sandrine Le Gall‐David, Luis A. Amador, Céline Druart, Nathalie M. Delzenne, Frédérique Barloy-Hubler, Philippe Legrand, Gaëlle Boudry
Software Mentions: 2
Published: almost 6 years ago

10.3390/nu12082364

Gut Microbiota Associations with Metabolic Health and Obesity Status in Older Adults
Cited by: 32
Author(s): Xiaozhong Zhong, Janas M. Harrington, Seán Millar, Ivan J. Perry, Paul W. O’Toole, Catherine M. Phillips
Software Mentions: 2
Published: about 6 years ago

10.3390/nu9040393

Differential Effect of Sucrose and Fructose in Combination with a High Fat Diet on Intestinal Microbiota and Kidney Oxidative Stress
Cited by: 64
Author(s): Adriana Rosas-Villegas, Mónica Sánchez‐Tapia, Azalia Ávila-Nava, V Mercy Ramírez, Armando R. Tovar, Nimbe Torres
Software Mentions: 2
Published: over 9 years ago

10.3390/nu13020636

Gut Microbiota Bacterial Species Associated with Mediterranean Diet-Related Food Groups in a Northern Spanish Population
Cited by: 39
Author(s): Carles Rosés, Amelia Marti, Salvador Quintana, José Ignacio Riezu-Boj, Julian Martínez, Fermı́n I. Milagro, Anna Barceló
Software Mentions: 2
Published: over 5 years ago

10.3390/nu13051496

Effects of Whole-Grain and Sugar Content in Infant Cereals on Gut Microbiota at Weaning: A Randomized Trial
Cited by: 8
Author(s): Julio Plaza‐Díaz, María Luisa Bernal, Sophie Schutte, Empar Chenoll, Salvador Genovés, Francisco M. Codoñer, Ángel Gil, Luis Manuel Sánchez-Siles
Software Mentions: 2
Published: over 5 years ago

10.3390/nu12072088

Sex-Specific Differences in the Gut Microbiome in Response to Dietary Fiber Supplementation in IL-10-Deficient Mice
Cited by: 16
Author(s): Zhengxiao Zhang, Jae Eun Hyun, Aducio Thiesen, Heekuk Park, Naomi Hotte, Hikaru Watanabe, Takanobu Higashiyama, Karen Madsen
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2014.00681

Soil bacterial community structure remains stable over a 5-year chronosequence of insect-induced tree mortality
Cited by: 25
Author(s): Scott Ferrenberg, Joseph E. Knelman, Jennifer Jones, Stower C. Beals, William D. Bowman, Diana R. Nemergut
Software Mentions: 2
Published: over 11 years ago

10.1002/ece3.2245

Anthropogenic impacts on Costa Rican bat parasitism are sex specific
Cited by: 20
Author(s): Hannah K. Frank, Chase D. Mendenhall, Seth Judson, Gretchen C. Daily, Elizabeth A. Hadly
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0014354

Patterns of Spatial Variation of Assemblages Associated with Intertidal Rocky Shores: A Global Perspective
Cited by: 34
Author(s): Juan J. Cruz‐Motta, Patricia Miloslavich, Gabriela Palomo, Katrin Iken, Brenda Konar, Gerhard Pohle, Thomas J. Trott, Lisandro Benedetti‐Cecchi, César Herrera, Alejandra Hernández, Adriana E. Sardi, Andrea Bueno, Julio Castillo, Eduardo Salas, Edlin Guerra‐Castro, Judith Gobin, Diana Isabel Gómez, Rafael Riosmena‐Rodríguez, Angela Mead, Gregório Bigatti, Ann L. Knowlton, Yoshihisa Shirayama
Software Mentions: 2
Published: over 15 years ago

10.1002/ece3.7544

Calcicole–calcifuge plant strategies limit restoration potential in a regional semi‐arid flora
Cited by: 9
Author(s): Adam T. Cross, Hans Lambers
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.7857

Effects of natural and seminatural elements on the composition and dispersion of carabid beetles inhabiting an agroecosystem in Northern Italy
Cited by: 2
Author(s): Francesca Della Rocca, Alfredo Venturo, Pietro Milanesi, Francesco Bracco
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0221980

The intensity of male-male competition may affect chemical scent constituents in the dark ventral patch of male Iberian red deer
Cited by: 10
Author(s): Eva de la Peña, José Martı́n, Juan Carranza
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0093893

Fungal Community Structure in Disease Suppressive Soils Assessed by 28S LSU Gene Sequencing
Cited by: 110
Author(s): C. Ryan Penton, V. V. S. R. Gupta, James M. Tiedje, Stephen M. Neate, K. Ophel-Keller, Michael R. Gillings, Paul R. Harvey, Amanda Pham, David Roget
Software Mentions: 2
Published: over 12 years ago

10.1002/ecy.2815

Traits of litter‐dwelling forest arthropod predators and detritivores covary spatially with traits of their resources
Cited by: 23
Author(s): Pierre‐Marc Brousseau, Dominique Gravel, I. Tanya Handa
Software Mentions: 2
Published: about 7 years ago

10.1002/ecy.2482

Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes
Cited by: 167
Author(s): Andrew T. Nottingham, Noah Fierer, Benjamín L. Turner, Jeanette Whitaker, Nicholas J. Ostle, Niall P. McNamara, Richard D. Bardgett, Jonathan W. Leff, Norma Salinas, Miles R. Silman, Loeske E. B. Kruuk, Patrick Meir
Software Mentions: 2
Published: almost 8 years ago

10.1080/22221751.2020.1783188

Metagenomic analysis of the lung microbiome in pulmonary tuberculosis - a pilot study
Cited by: 15
Author(s): Yongfeng Hu, Min Cheng, Bo Liu, Jie Dong, Lu Sun, Jian Yang, Fan Yang, Xinchun Chen, Qi Jin
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0068313

Changes in Benthos Associated with Mussel (Mytilus edulis L.) Farms on the West-Coast of Scotland
Cited by: 30
Author(s): Thomas A. Wilding, Thom Nickell
Software Mentions: 2
Published: about 13 years ago

10.1007/s00267-017-0833-4

Specific Vicariance of Two Primeval Lowland Forest Lichen Indicators
Cited by: 7
Author(s): Dariusz Kubiak, Piotr Osyczka
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0164735

Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens
Cited by: 34
Author(s): Bruno Tilocca, Maren Witzig, M. Rodehutscord, Jana Seifert
Software Mentions: 2
Published: almost 10 years ago

10.1128/mSystems.00775-21

Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis
Cited by: 3
Author(s): Yaowen Chen, Pu Liao, Runyan Liu, Shuofeng Hu, Zhen He, Guohua Dong, Chao Feng, Sijing An, Xiaomin Ying
Software Mentions: 2
Published: almost 5 years ago

10.3390/nu12030732

α-Linolenic Acid-Rich Diet Influences Microbiota Composition and Villus Morphology of the Mouse Small Intestine
Cited by: 21
Author(s): Hristo Todorov, Bettina Kollar, Franziska Bayer, Inês Brandão, Amrit Mann, Julia Mohr, Giulia Pontarollo, Henning Formes, Roland H. Stauber, Jens M. Kittner, Kristina Endres, Bernhard Watzer, Wolfgang Andreas Nockher, Felix Sommer, Susanne Gerber, Carsten Reinhardt
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0250162

Water pre-filtration methods to improve environmental DNA detection by real-time PCR and metabarcoding
Cited by: 18
Author(s): Kazuto Takasaki, Hiroki Aihara, Toshinobu Imanaka, Takahiro Matsudaira, Keita Tsukahara, Atsuko Usui, Sora Osaki, Hideyuki Doi
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00902-21

SubTap, a Versatile 3D Printed Platform for Eavesdropping on Extracellular Interactions
Cited by: 1
Author(s): Caroline Birer-Williams, Rosalie K. Chu, Christopher R. Anderton, Erik S. Wright
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0101204

Coral Reef Community Composition in the Context of Disturbance History on the Great Barrier Reef, Australia
Cited by: 49
Author(s): Nicholas A. J. Graham, Karen M. Chong‐Seng, Cindy Huchery, Fraser A. Januchowski‐Hartley, Kirsty L. Nash
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0235389

Damselfish face climate change: Impact of temperature and habitat structure on agonistic behavior
Cited by: 7
Author(s): Thalles da Silva-Pinto, Mayara M. Silveira, Jéssica Ferreira de Souza, Ana Luisa Pires Moreira, Edson A. Vieira, Guilherme O. Longo, Ana Carolina Luchiari
Software Mentions: 2
Published: about 6 years ago

10.1186/s40793-019-0350-6

Characterization of the microbiome associated with in situ earthen materials
Cited by: 1
Author(s): Alexis Simons, Alexandra Bertron, Jean‐Emmanuel Aubert, Christophe Roux, Christine Roques
Software Mentions: 2
Published: over 6 years ago

10.1186/s40793-020-00370-x

Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria
Cited by: 17
Author(s): Sean M. Kearney, Elaina Thomas, Allison Coe, Sallie W. Chisholm
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0235441

Host and environmental determinants of microbial community structure in the marine phyllosphere
Cited by: 10
Author(s): Margaret A. Vogel, Olivia U. Mason, Thomas E. Miller
Software Mentions: 2
Published: about 6 years ago

10.1186/s40793-020-00368-5

The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania
Cited by: 8
Author(s): Dipti Pitta, Nagaraju Indugu, John D. Toth, Joseph S. Bender, Linda D. Baker, Meagan L. Hennessy, Bonnie Vecchiarelli, Helen Aceto, Zhengxia Dou
Software Mentions: 2
Published: over 5 years ago

10.3390/nu13072269

Oral Ferric Maltol Does Not Adversely Affect the Intestinal Microbiome of Patients or Mice, but Ferrous Sulphate Does
Cited by: 9
Author(s): Awad Mahalhal, Alessandra Frau, Michael D. Burkitt, Umer Zeeshan Ijaz, Christopher A Lamb, John C. Mansfield, Stephen J. Lewis, D. Mark Pritchard, Chris Probert
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0231641

Detect coastal disturbances and climate change effects in coralligenous community through sentinel stations
Cited by: 12
Author(s): José Carlos García‐Gómez, A. R. González, Manuel Maestre, Free Espinosa
Software Mentions: 2
Published: over 6 years ago

10.1038/s41396-018-0334-3

Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil
Cited by: 34
Author(s): David J. Levy‐Booth, Ian Giesbrecht, Colleen T. E. Kellogg, Thierry J. Heger, D. V. D’Amore, Patrick J. Keeling, Steven J. Hallam, William W. Mohn
Software Mentions: 2
Published: over 7 years ago

10.1186/s40793-019-0349-z

Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research
Cited by: 25
Author(s): Kari Oline Bøifot, Jostein Gohli, Line Victoria Moen, Marius Dybwad
Software Mentions: 2
Published: over 6 years ago

10.1007/s10661-017-6135-8

Trace element concentrations in livers of Common Buzzards Buteo buteo from eastern Poland
Cited by: 5
Author(s): Ignacy Kitowski, Dariusz Jakubas, Dariusz Wiącek, Agnieszka Sujak, Grzegorz Pitucha
Software Mentions: 2
Published: about 9 years ago

10.1007/s11356-020-10159-7

Bacterial community structure upstream and downstream of cascade dams along the Lancang River in southwestern China
Cited by: 17
Author(s): Xia Luo, Xinyi Xiang, Guoyi Huang, Xiaorui Song, Peijia Wang, Yuanhao Yang, Kaidao Fu, Rongxiao Che
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0118632

Longitudinal Analysis of the Premature Infant Intestinal Microbiome Prior to Necrotizing Enterocolitis: A Case-Control Study
Cited by: 134
Author(s): Yanjiao Zhou, Gururaj Shan, Erica Sodergren, George M. Weinstock, W. Allan Walker, Katherine E. Gregory
Software Mentions: 2
Published: over 11 years ago

10.1021/acs.est.0c07262

Responses of Coastal Marine Microbiomes Exposed to Anthropogenic Dissolved Organic Carbon
Cited by: 14
Author(s): Elena Cerro‐Gálvez, Jordi Dachs, Daniel Lundin, María-Carmen Fernández-Pinos, Marta Sebastián, Maria Vila‐Costa
Software Mentions: 2
Published: over 5 years ago

10.1021/acs.est.9b07705

Benthic Crustacean Digestion Can Modulate the Environmental Fate of Microplastics in the Deep Sea
Cited by: 82
Author(s): Alessandro Cau, Carlo Giacomo Avio, Claudia Dessì, Davide Moccia, Antonio Pusceddu, Francesco Regoli, Rita Cannas, María Cristina Follesa
Software Mentions: 2
Published: over 6 years ago

10.1007/s00394-020-02190-8

Diet change affects intestinal microbiota restoration and improves vertical sleeve gastrectomy outcome in diet-induced obese rats
Cited by: 6
Author(s): Joana Rossell, Björn Brindefalk, Juan Antonio Baena‐Fustegueras, Júlia Peinado-Onsurbe, Klas I. Udekwu
Software Mentions: 2
Published: over 6 years ago

10.1183/13993003.01909-2019

Dissimilarity of the gut–lung axis and dysbiosis of the lower airways in ventilated preterm infants
Cited by: 21
Author(s): David J. Gallacher, Emma Mitchell, Dagmar Alber, Richard Wach, Nigel Klein, Julian R. Marchesi, Sailesh Kotecha
Software Mentions: 2
Published: over 6 years ago

10.1155/2019/6976394

The Chinese Herbal Formula Shenzhu Tiaopi Granule Results in Metabolic Improvement in Type 2 Diabetic Rats by Modulating the Gut Microbiota
Cited by: 16
Author(s): Jindong Zhao, Yan Li, Min Sun, Ling Xin, Tianming Wang, Liangbing Wei, Chanjuan Yu, Mengmeng Liu, Yuan Ni, Ruimin Lu, Taotao Bao, Lu Zhang, Yuanyuan Wu, Zhaohui Fang
Software Mentions: 2
Published: about 7 years ago

10.1111/eva.12473

Trans-generational plasticity in response to immune challenge is constrained by heat stress
Cited by: 10
Author(s): Olivia Roth, Susanne H. Landis
Software Mentions: 2
Published: over 9 years ago

10.3390/microorganisms8040581

Effect of Inoculum Pretreatment on the Composition of Microbial Communities in Anaerobic Digesters Producing Volatile Fatty Acids
Cited by: 26
Author(s): Lucía Blasco, Minna Kahala, Elina Tampio, Markku Vainio, Satu Ervasti, Saija Rasi
Software Mentions: 2
Published: over 6 years ago

10.1111/eva.12956

Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?
Cited by: 16
Author(s): Ian Kaplan, Nicholas A. Bokulich, J. Gregory Caporaso, Laramy Enders, Wadih Ghanem, Kathryn S. Ingerslew
Software Mentions: 2
Published: over 6 years ago

10.1038/s41396-020-00816-7

Microbial ecology of the newly discovered serpentinite-hosted Old City hydrothermal field (southwest Indian ridge)
Cited by: 23
Author(s): Aurélien Lecoeuvre, Bénédicte Ménèz, Mathilde Cannat, Valérie Chavagnac, Emmanuelle Gérard
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41396-018-0323-6

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
Cited by: 229
Author(s): Phillipe M. Rosado, D. L. Leite, Gabriela Duarte, Ricardo M. Chaloub, Guillaume Jospin, Ulisses Nunes da Rocha, J. Saraiva, Francisco Dini‐Andreote, Jonathan A. Eisen, David G. Bourne, Raquel S. Peixoto
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0142370

Temporal Patterns and Environmental Correlates of Macroinvertebrate Communities in Temporary Streams
Cited by: 10
Author(s): Paul K. Botwe, Leon A. Barmuta, Regina H. Magierowski, Paul McEvoy, Peter Goonan, Scott Carver
Software Mentions: 2
Published: almost 11 years ago

10.1096/fj.202000042R

The early life microbiota protects neonatal mice from pathological small intestinal epithelial cell shedding
Cited by: 23
Author(s): Kevin R. Hughes, Zoe Schofield, Matthew J. Dalby, Shabhonam Caim, Lisa Chalklen, Federico Bernuzzi, Cristina Alcon-Giner, Gwénaëlle Le Gall, Alastair Watson, Lindsay J. Hall
Software Mentions: 2
Published: over 6 years ago

10.1096/fj.201900071R

APOEgenotype influences the gut microbiome structure and function in humans and mice: relevance for Alzheimer's disease pathophysiology
Cited by: 114
Author(s): Tam Tran, Simone Corsini, Lee Kellingray, Claire Hegarty, Gwénaëlle Le Gall, Arjan Narbad, Michael Müller, Noemı́ Tejera, Paul W. O’Toole, Anne‐Marie Minihane, David Vauzour
Software Mentions: 2
Published: over 7 years ago

10.1002/2211-5463.12516

Reduced colonic mucin degradation in breastfed infants colonized by Bifidobacterium longum subsp . infantis EVC001
Cited by: 36
Author(s): Sercan Karav, Giorgio Casaburi, Steven A. Frese
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0222449

Sputum microbiota and inflammation at stable state and during exacerbations in a cohort of chronic obstructive pulmonary disease (COPD) patients
Cited by: 18
Author(s): Solveig Tangedal, Rune Nielsen, Marianne Aanerud, Louise Jeanette Pauline Persson, Harald G. Wiker, Per Bakke, Pieter S. Hiemstra, Tomas Mikal Eagan
Software Mentions: 2
Published: almost 7 years ago

10.1093/femsec/fiab131

Apple endophyte community in relation to location, scion and rootstock genotypes and susceptibility to European canker
Cited by: 10
Author(s): Leone Olivieri, Robert Saville, Alan C. Gange, Xiangming Xu
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0239198

Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action
Cited by: 13
Author(s): Sarah A. Morley, Melissa M. Foley, Jeffrey J. Duda, Mathew M Beirne, Rebecca Paradis, Rachelle C. Johnson, Michael L. McHenry, Mel Elofson, Earnest M. Sampson, Randall E. McCoy, Justin Stapleton, George R. Pess
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms8111773

Microbial Shifts Following Five Years of Cover Cropping and Tillage Practices in Fertile Agroecosystems
Cited by: 8
Author(s): Nakian Kim, María Celina Zabaloy, Chance W. Riggins, Sandra L. Rodriguez‐Zas, María B. Villamil
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0209549

Lack of conspecific visual discrimination between second-year males and females in the Saffron Finch
Cited by: 7
Author(s): María Juliana Benítez Saldívar, Viviana Massoni
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms9020226

Helminth Interactions with Bacteria in the Host Gut Are Essential for Its Immunomodulatory Effect
Cited by: 3
Author(s): Milan Jirků, Zuzana Lhotská, Lucia Frgelecová, O Kadlecová, Klára J. Petrželková, Evan Morien, Kateřina Jirků-Pomajbíková
Software Mentions: 2
Published: over 5 years ago

10.1007/s12223-020-00828-y

Denaturing gradient gel electrophoresis and multi-SIR profiles of soil microbial communities from a karst doline at Aggtelek National Park, Hungary
Cited by: 3
Author(s): Márton Mucsi, Gergely Krett, Tibor Szili‐Kovács, János Móga, Andrea K. Borsodi
Software Mentions: 2
Published: almost 6 years ago

10.3390/foods9050595

Molecular Characterization and Enological Potential of A High Lactic Acid-Producing Lachancea thermotolerans Vineyard Strain
Cited by: 27
Author(s): Georgios Sgouros, Athanasios Mallouchos, Maria-Evangelia Filippousi, Georgios Banilas, Aspasia Nisiotou
Software Mentions: 2
Published: over 6 years ago

10.3390/foods9101381

Qualitative Factor-Based Comparison of NMR, Targeted and Untargeted GC-MS and LC-MS on the Metabolomic Profiles of Rioja and Priorat Red Wines
Cited by: 6
Author(s): Dimitrios Kioroglou, Albert Mas, María del Carmen Portillo Guisado
Software Mentions: 2
Published: almost 6 years ago

10.3390/foods10061271

Combining Culture-Dependent and Culture-Independent Methods: New Methodology Insight on the Vibrio Community of Ruditapes philippinarum
Cited by: 8
Author(s): Angela Zampieri, Massimiliano Babbucci, Lisa Carraro, Massimo Milan, Luca Fasolato, Barbara Cardazzo
Software Mentions: 2
Published: about 5 years ago

10.3390/foods9121792

Highly Branched Neo-Fructans (Agavins) Attenuate Metabolic Endotoxemia and Low-Grade Inflammation in Association with Gut Microbiota Modulation on High-Fat Diet-Fed Mice
Cited by: 16
Author(s): Alicia Huazano-García, María Blanca Silva-Adame, Juan Vázquez-Martínez, Argel Gastélum-Arellánez, Lino Sánchez-Segura, Mercedes G. López
Software Mentions: 2
Published: over 5 years ago

10.3390/foods10061259

Amaranth Supplementation Improves Hepatic Lipid Dysmetabolism and Modulates Gut Microbiota in Mice Fed a High-Fat Diet
Cited by: 4
Author(s): Yongshou Yang, Rikako Fukui, Huijuan Jia, Harubumi Kato
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0118580

Natural Shorelines Promote the Stability of Fish Communities in an Urbanized Coastal System
Cited by: 23
Author(s): Steven B. Scyphers, Tarik C. Gouhier, Jonathan H. Grabowski, Michael W. Beck, John F. Mareska, Sean P. Powers
Software Mentions: 2
Published: about 11 years ago

10.3389/fmicb.2015.00845

Namib Desert dune/interdune transects exhibit habitat-specific edaphic bacterial communities
Cited by: 37
Author(s): Sandra Ronca, Jean‐Baptiste Ramond, Brian E. Jones, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2018.00279

Cultivation-Independent and Cultivation-Dependent Analysis of Microbes in the Shallow-Sea Hydrothermal System Off Kueishantao Island, Taiwan: Unmasking Heterotrophic Bacterial Diversity and Functional Capacity
Cited by: 23
Author(s): Kai Tang, Yao Zhang, Dan Lin, Han Yu, Chen‐Tung Arthur Chen, Deli Wang, Yu‐Shih Lin, Jia Sun, Qiang Zheng, Nianzhi Jiao
Software Mentions: 2
Published: over 8 years ago

10.1038/ismej.2017.1

Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire
Cited by: 90
Author(s): Sang Hoon Lee, Jackson W Sorensen, Keara L. Grady, Tammy C Tobin, Ashley Shade
Software Mentions: 2
Published: over 9 years ago

10.3390/microorganisms8091290

Effects of Lentil Genotype on the Colonization of Beneficial Trichoderma Species and Biocontrol of Aphanomyces Root Rot
Cited by: 15
Author(s): Navid Bazghaleh, Pratibha Prashar, Sheridan L. Woo, Albert Vandenberg
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0087093

Architectural Design Drives the Biogeography of Indoor Bacterial Communities
Cited by: 172
Author(s): Steven W. Kembel, James F. Meadow, Timothy K. O’Connor, Gwynne Mhuireach, Dale Northcutt, Jeff Kline, Maxwell Moriyama, Glen Brown, Brendan J. M. Bohannan, Jessica L. Green
Software Mentions: 2
Published: over 12 years ago

10.1038/ismej.2016.139

A family of interaction-adjusted indices of community similarity
Cited by: 36
Author(s): Thomas Sebastian Benedikt Schmidt, João F. Matias Rodrigues, Christian von Mering
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2019.00052

Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs
Cited by: 50
Author(s): Jianping Quan, Guangyan Cai, Ming Yang, Zhonghua Zeng, Rongrong Ding, Xingwang Wang, Zhanwei Zhuang, Shenping Zhou, Shaoyun Li, Huaqiang Yang, Zicong Li, Enqin Zheng, Wen Huang, Jie Yang, Zhenfang Wu
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.02903

Water Quality and Total Microbial Load: A Double-Threshold Identification Procedure Intended for Space Applications
Cited by: 6
Author(s): Stefano Amalfitano, Caterina Levantesi, Laurent Garrelly, D. Giacosa, Francesca Bersani, Simona Rossetti
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.679729

Disruption of Traditional Grazing and Fire Regimes Shape the Fungal Endophyte Assemblages of the Tall-Grass Brachypodium rupestre
Cited by: 1
Author(s): María Teresa Machado Durán, Leticia San Emeterio, Leire Múgica, Íñigo Zabalgogeazcoa, Beatriz R. Vázquez de Aldana, R. M. Canals
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.00442

Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea
Cited by: 10
Author(s): Lars Wöhlbrand, Bernd Wemheuer, Christoph Feenders, Hanna S. Ruppersberg, Christina Hinrichs, Bernd Blasius, Rolf Daniel, Ralf Rabus
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2019.02252

Resistance Breeding of Common Bean Shapes the Physiology of the Rhizosphere Microbiome
Cited by: 34
Author(s): Lucas William Mendes, Maria Luíza Morais Barreto de Chaves, Mariley de Cássia da Fonseca, Rodrigo Mendes, Jos M. Raaijmakers, Siu Mui Tsai
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2016.01949

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism
Cited by: 75
Author(s): Emily B. Graham, Alex R. Crump, Charles T. Resch, Sarah Fansler, Evan Arntzen, David W. Kennedy, Jim K. Fredrickson, James C. Stegen
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.674160

Deep Soil Layers of Drought-Exposed Forests Harbor Poorly Known Bacterial and Fungal Communities
Cited by: 35
Author(s): Beat Frey, Lorenz Walthert, Carla Perez-Mon, Beat Stierli, Roger Köchli, Alexander Dharmarajah, Ivano Brunner
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.02598

Characterization of Bacterial Communities in Mexican Artisanal Raw Milk “Bola de Ocosingo” Cheese by High-Throughput Sequencing
Cited by: 11
Author(s): Jesús Alejandro Aldrete-Tapia, Claudia Meyli Escobar-Ramírez, Mark L. Tamplin, Montserrat Hernández‐Iturriaga
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2015.00134

The nasal microbiota in health and disease: variation within and between subjects
Cited by: 126
Author(s): Kristi Biswas, Michael Hoggard, Ravi Jain, Michael W. Taylor, Richard Douglas
Software Mentions: 2
Published: over 11 years ago

10.3390/microorganisms9050987

The Effect of Antimicrobial Treatment upon the Gill Bacteriome of Atlantic Salmon (Salmo salar L.) and Progression of Amoebic Gill Disease (AGD) In Vivo
Cited by: 8
Author(s): Joel Slinger, Mark B. Adams, Chris Stratford, Megan Rigby, James W. Wynne
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms9071406

Effects of the Denitrification Inhibitor “Procyanidins” on the Diversity, Interactions, and Potential Functions of Rhizosphere-Associated Microbiome
Cited by: 2
Author(s): Mylène Hugoni, William Galland, Solène Lecomte, Maxime Bruto, Mohamed Barakat, Florence Piola, Wafa Achouak, Feth el Zahar Haichar
Software Mentions: 2
Published: about 5 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning PERMANOVA 6,292