cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1038/srep23027

Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status
Cited by: 56
Author(s): Angela B. Javurek, William G. Spollen, Amber M. Mann Ali, Sarah A. Johnson, Dennis B. Lubahn, Nathan J. Bivens, Karen Bromert, Mark R. Ellersieck, Scott A. Givan, Cheryl S. Rosenfeld
Software Mentions: 2
Published: over 8 years ago

10.1038/srep25945

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study
Cited by: 173
Author(s): Christian Milani, Andrea Ticinesi, J. Gerritsen, Antonio Nouvenne, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Sabrina Duranti, Marta Mangifesta, Alice Viappiani, Chiara Ferrario, Marcello Maggio, Fulvio Lauretani, Willem M. de Vos, Douwe van Sinderen, Tiziana Meschi, Marco Ventura
Software Mentions: 2
Published: over 8 years ago

10.1038/srep26513

Elevational sensitivity in an Asian ‘hotspot’: moth diversity across elevational gradients in tropical, sub-tropical and sub-alpine China
Cited by: 8
Author(s): Louise A. Ashton, Akihiro Nakamura, Chris J. Burwell, Yong Tang, Min Cao, T. Whitaker, Zhenhua Sun, Han Huang, R. L. Kitching
Software Mentions: 2
Published: over 8 years ago

10.1038/srep28904

Dynamics of dental evolution in ornithopod dinosaurs
Cited by: 17
Author(s): Edward Strickson, Albert Prieto‐Márquez, Michael J. Benton, Thomas L. Stubbs
Software Mentions: 2
Published: over 8 years ago

10.1038/srep30930

Extremely heat tolerant photo-symbiosis in a shallow marine benthic foraminifera
Cited by: 32
Author(s): Christiane Schmidt, Danna Titelboim, J. Brandt, Barak Herut, Sigal Abramovich, Ahuva Almogi‐Labin, Michal Kučera
Software Mentions: 2
Published: over 8 years ago

10.1038/srep31519

Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data
Cited by: 56
Author(s): Ran Blekhman, Karen Tang, Elizabeth A. Archie, Luis B. Barreiro, Zachary P. Johnson, Mark Wilson, Jaden R. Kohn, Michael L. Yuan, Laurence R. Gesquiere, Laura Grieneisen, Jenny Tung
Software Mentions: 2
Published: over 8 years ago

10.1038/srep30607

Climate extremes can drive biological assemblages to early successional stages compared to several mild disturbances
Cited by: 19
Author(s): Carlos Sanz‐Lázaro
Software Mentions: 2
Published: over 8 years ago

10.1038/srep31447

Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea
Cited by: 21
Author(s): Hanna Schade, Lisa Mevenkamp, Katja Guilini, Stefanie Meyer, Stanislav N. Gorb, Doris Abele, Alexandra Vanreusel, Frank Melzner
Software Mentions: 2
Published: over 8 years ago

10.1038/srep32411

Bacterial community structure and function shift across a northern boreal forest fire chronosequence
Cited by: 33
Author(s): Hui Sun, Minna Santalahti, Jukka Pumpanen, Egle Köster, Frank Berninger, Tommaso Raffaello, Fred O. Asiegbu, Jussi Heinonsalo
Software Mentions: 2
Published: over 8 years ago

10.1038/srep35882

The human laryngeal microbiome: effects of cigarette smoke and reflux
Cited by: 34
Author(s): Marie E. Jetté, Kimberly A. Dill‐McFarland, Alissa S. Hanshew, Garret Suen, Susan L. Thibeault
Software Mentions: 2
Published: about 8 years ago

10.1038/srep36271

Coral symbioses under prolonged environmental change: living near tolerance range limits
Cited by: 39
Author(s): Eugenia M. Sampayo, Tyrone Ridgway, Lorenzo Franceschinis, George Roff, Ove Høegh-Guldberg, Sophie Dove
Software Mentions: 2
Published: about 8 years ago

10.1038/srep36260

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore
Cited by: 101
Author(s): James R. Guest, Karenne Tun, Jeffrey Low, Adriana Vergés, Ezequiel M. Marzinelli, Alexandra H. Campbell, Andrew G. Bauman, David A. Feary, Loke Ming Chou, Peter D. Steinberg
Software Mentions: 2
Published: about 8 years ago

10.1038/srep36672

Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest
Cited by: 23
Author(s): Witoon Purahong, Walter Durka, Markus Fischer, Sven Dommert, Ricardo Schöps, François Buscot, Tesfaye Wubet
Software Mentions: 2
Published: about 8 years ago

10.1038/srep40189

Diel-scale temporal dynamics recorded for bacterial groups in Namib Desert soil
Cited by: 34
Author(s): Eoin Gunnigle, Aline Frossard, Jean‐Baptiste Ramond, Leandro D. Guerrero, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep40864

Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation
Cited by: 124
Author(s): Kimberly A. Dill‐McFarland, Jacob D. Breaker, Garret Suen
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep40702

Wells provide a distorted view of life in the aquifer: implications for sampling, monitoring and assessment of groundwater ecosystems
Cited by: 63
Author(s): Kathryn Korbel, Anthony A. Chariton, Sarah Stephenson, Paul Greenfield, Grant C. Hose
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep41234

Paenibacillus polymyxa NSY50 suppresses Fusarium wilt in cucumbers by regulating the rhizospheric microbial community
Cited by: 50
Author(s): Lu Shi, Nanshan Du, Sheng Shu, Jian Sun, Shuzhan Li, Shirong Guo
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep43483

Effect of predatory bacteria on the gut bacterial microbiota in rats
Cited by: 51
Author(s): Kenneth Shatzkes, Chi Tang, Eric Singleton, Sean Shukla, Michael Zuena, Sudeep Gupta, Sonal Dharani, Joseph Rinaggio, Nancy Connell, Daniel E. Kadouri
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep44182

Stress during pregnancy alters temporal and spatial dynamics of the maternal and offspring microbiome in a sex-specific manner
Cited by: 156
Author(s): Eldin Jašarević, Christopher D. Howard, Ana M. Misic, Daniel P. Beiting, Tracy L. Bale
Software Mentions: 2
Published: over 7 years ago

10.1038/srep44382

Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar
Cited by: 134
Author(s): Amit K. Jaiswal, Y. Elad, Indira Paudel, Ellen R. Graber, Eddie Cytryn, Omer Frenkel
Software Mentions: 2
Published: over 7 years ago

10.1038/srep46297

Inorganic carbon physiology underpins macroalgal responses to elevated CO2
Cited by: 107
Author(s): Christopher E. Cornwall, Andrew T. Revill, Jason M. Hall‐Spencer, Marco Milazzo, John A. Raven, Catriona L. Hurd
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-00953-8

Responses of denitrifying bacterial communities to short-term waterlogging of soils
Cited by: 34
Author(s): Yong Wang, Yoshitaka Uchida, Yumi Shimomura, Hiroko Akiyama, Masahito Hayatsu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-01359-2

Effect of spatio-temporal shifts in salinity combined with other environmental variables on the ecological processes provided by Zostera noltei meadows
Cited by: 13
Author(s): Ana I. Sousa, Ricardo Calado, Daniel F. R. Cleary, Cláudia Nunes, Manuel A. Coimbra, João Serôdio, Ana I. Lillebø
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-01212-6

Determination of nasal and oropharyngeal microbiomes in a multicenter population-based study – findings from Pretest 1 of the German National Cohort
Cited by: 15
Author(s): Manas K. Akmatov, Nadine Koch, Marius Vital, Wolfgang Ahrens, Dieter Flesch-Janys, Julia Fricke, Anja Gatzemeier, Halina Greiser, Kathrin Günther, Thomas Illig, Rudolf Kaaks, Bastian Krone, Andrea A. Kühn, Jakob Linseisen, Christine Meisinger, Karin B. Michels, Susanne Moebus, Alexandra Nieters, Nadia Obi, Anja Schultze, Julia Six-Merker, Dietmar H. Pieper, Frank Peßler
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-02258-2

Effects of replacing Leymus chinensis with whole-crop wheat hay on Holstein bull apparent digestibility, plasma parameters, rumen fermentation, and microbiota
Cited by: 19
Author(s): Wen-jing Niu, Yang He, Chuanqi Xia, Muhammad Aziz Rahman, Qinghua Qiu, Tao Shao, Yixun Liang, Linbao Ji, Haibo Wang, Binghai Cao
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-02363-2

Seasonal soil microbial responses are limited to changes in functionality at two Alpine forest sites differing in altitude and vegetation
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-03095-z

Comparison of the active and resident community of a coastal microbial mat
Cited by: 33
Author(s): Daniela Clara Cardoso, Anna Sandionigi, Mariana Silvia Cretoiu, Maurizio Casiraghi, Lucas J. Stal, Henk Bolhuis
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-03568-1

An Assessment of Mobile Predator Populations along Shallow and Mesophotic Depth Gradients in the Hawaiian Archipelago
Cited by: 21
Author(s): Jacob Asher, Ivor D. Williams, Euan S. Harvey
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-05241-z

Effects of suspended sediments on the sponge holobiont with implications for dredging management
Cited by: 36
Author(s): Mari Carmen Pineda, Brian Strehlow, Miriam Sternel, Alan Duckworth, Ross Jones, Nicole S. Webster
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-05485-9

Costly neighbours: Heterospecific competitive interactions increase metabolic rates in dominant species
Cited by: 13
Author(s): Matouš Janča, Lumı́r Gvoždı́k
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-06687-x

Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach
Cited by: 43
Author(s): Vera G. Fonseca, Frédéric Sinniger, John Gaspar, Christopher Quince, Simon Creer, Deborah M. Power, Lloyd S. Peck
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-07425-z

High diversity and unique composition of gut microbiomes in pygmy (Kogia breviceps) and dwarf (K. sima) sperm whales
Cited by: 28
Author(s): Patrick M. Erwin, Ryan G. Rhodes, Kevin B. Kiser, Tiffany F. Keenan-Bateman, William A. McLellan, D. Ann Pabst
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-49096-y

Miltefosine treatment reduces visceral hypersensitivity in a rat model for irritable bowel syndrome via multiple mechanisms
Cited by: 13
Author(s): Sara Botschuijver, Sophie A. van Diest, Isabelle van Thiel, Rafael Simone Saia, Anne S. Strik, Zhumei Yu, Daniele Maria-Ferreira, Olaf Welting, Dániel Keszthelyi, Gary Jennings, Sigrid E. M. Heinsbroek, Ronald P.J. Oude Elferink, Frank Schuren, Wouter J. de Jonge, René M. van den Wijngaard
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-49220-y

Plumage iridescence is associated with distinct feather microbiota in a tropical passerine
Cited by: 5
Author(s): Veronika Javůrková, Erik D Enbody, Jakub Kreisinger, Kryštof Chmel, Jakub Mrázek, Jordan Karubian
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49893-5

Remission in Crohn’s disease is accompanied by alterations in the gut microbiota and mucins production
Cited by: 28
Author(s): Daniéla Oliveira Magro, Andrey dos Santos, Dioze Guadagnini, Flavia Moreira de Godoy, Sylvia Helena Monteiro Silva, Wilson José Fernandes Lemos, Nicola Vitulo, Sandra Torriani, Lílian Vital Pinheiro, Carlos Augusto Real Martinez, Mário José Abdalla Saad, Cláudio Saddy Rodrigues Coy
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49823-5

Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome
Cited by: 23
Author(s): Carrie E. Jung, Jessica Chopyk, Ji Hyun Shin, Emily S. Lukacz, Linda Brubaker, Leila K. Schwanemann, Rob Knight, Alan J. Wolfe, David T. Pride
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49832-4

Distinct responses from bacterial, archaeal and fungal streambed communities to severe hydrological disturbances
Cited by: 19
Author(s): Giulia Gionchetta, Anna M. Romaní, Francesc Oliva, Joan Artigas
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49854-y

Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents
Cited by: 46
Author(s): Paula Harkes, Afnan Khalil Ahmad Suleiman, S.J.J. van den Elsen, J.J. de Haan, M.H.M. Holterman, Eiko E. Kuramae, J. Helder
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-49555-6

Disentangling the environmental impact of different human disturbances: a case study on islands
Cited by: 16
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-50607-0

Ecotoxicological hazard of a mixture of glyphosate and aminomethylphosphonic acid to the mussel Mytilus galloprovincialis (Lamarck 1819)
Cited by: 26
Author(s): Valerio Matozzo, Marco Munari, Laura Masiero, Livio Finos, María Gabriella Marin
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51291-w

Sexual and genotypic variation in terpene quantitative and qualitative profiles in the dioecious shrub Baccharis salicifolia
Cited by: 7
Author(s): Xoaquín Moreira, Luis Abdala‐Roberts, Colleen S. Nell, Carla Vázquez‐González, Jessica D. Pratt, Ken Keefover‐Ring, Kailen A. Mooney
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-50952-0

The capacity of wastewater treatment plants drives bacterial community structure and its assembly
Cited by: 22
Author(s): Young Kyung Kim, Keunje Yoo, Min Sung Kim, Il Ki Han, Minjoo Larry Lee, Bo Ram Kang, Tae Kwon Lee, Joonhong Park
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51570-6

Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab
Cited by: 19
Author(s): Jan Kopecký, Zuzana Samkova, Ensyeh Sarikhani, Martina Kyselková, Marek Omelka, Václav Krištůfek, Jiří Diviš, G. L. Grundmann, Yvan Moënne‐Loccoz, Markéta Ságová-Marečková
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51525-x

Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet
Cited by: 3
Author(s): Tom Houben, John Penders, Yvonne Oligschlaeger, Inês Magro dos Reis, Marc Jan Bonder, Debby P. Y. Koonen, Jingyuan Fu, Marten H. Hofker, Ronit Shiri-Sverdlov
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-51709-5

Competition structured a Late Cretaceous megaherbivorous dinosaur assemblage
Cited by: 26
Author(s): Jordan C. Mallon
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-53060-1

Limnological effects of a large Amazonian run-of-river dam on the main river and drowned tributary valleys
Cited by: 26
Author(s): Rafael M. Almeida, Stephen K. Hamilton, Emma J. Rosi‐Marshall, João Durval Arantes, Nathan Barros, Gina Boemer, Anderson Gripp, Vera L. M. Huszar, Pedro C. Junger, M. G. de Lima, F. Pacheco, Dirceu Tornavoi de Carvalho, Alexander J. Reisinger, Lúcia Helena Sampaio da Silva, Fábio Roland
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-53073-w

Microbial changes in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients
Cited by: 31
Author(s): Alexa M. G. A. Laheij, Judith E. Raber-Durlacher, Renée G. A. Koppelmans, Marie-Charlotte D.N.J.M. Huysmans, Carin Potting, Stephanie J. M. van Leeuwen, Mette D. Hazenberg, Michael T. Brennan, Inger von Bültzingslöwen, Jan‐Erik Johansson, J.J. de Soet, Thijs M. Haverman, Mark J. Buijs, Bernd W. Brandt, F.R. Rozema, Nicole M. A. Blijlevens, Egija Zaura
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-53769-z

Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome
Cited by: 16
Author(s): Rafael José Vivero, Marcela Villegas-Plazas, Gloria Cadavid-Restrepo, Claudia Ximena Moreno Herrera, Sandra Uribe, Howard Junca
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-54771-1

Effects of Long-term Cotton Continuous Cropping on Soil Microbiome
Cited by: 29
Author(s): Hui Xi, Jili Shen, Zhong Qu, Dingyi Yang, Shiming Liu, Xiaoqin Nie, Lu Zhu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-55063-4

Land use change effects on diversity of soil bacterial, Acidobacterial and fungal communities in wetlands of the Sanjiang Plain, northeastern China
Cited by: 57
Author(s): Xin Sui, Rongtao Zhang, Beat Frey, Libin Yang, Mai‐He Li, Hongwei Ni
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-54869-6

Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin’s finches on Santa Cruz Island
Cited by: 33
Author(s): Wesley T. Loo, Jefferson García-Loor, Rachael Y. Dudaniec, Sonia Kleindorfer, Colleen M. Cavanaugh
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55290-9

Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn’s disease
Cited by: 84
Author(s): Kinga Kowalska-Duplaga, Tomasz Gosiewski, Przemysław Kapusta, Agnieszka Sroka-Oleksiak, Andrzej Wędrychowicz, Stanisław Pieczarkowski, Agnieszka H. Ludwig-Słomczyńska, Paweł Wołkow, Krzysztof Fyderek
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55270-z

Phylogeographic patterns of intertidal arthropods (Acari, Oribatida) from southern Japanese islands reflect paleoclimatic events
Cited by: 8
Author(s): Tobias Pfingstl, Maximilian Wagner, Shimpei F. Hiruta, Stephan Koblmüller, Wataru Hagino, Satoshi Shimano
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55720-8

Postmenopause as a key factor in the composition of the Endometrial Cancer Microbiome (ECbiome)
Cited by: 43
Author(s): Dana M. Walsh, Alexis N. Hokenstad, Jun Chen, Jaeyun Sung, Gregory D. Jenkins, Nicholas Chia, Heidi Nelson, Andrea Mariani, Marina Walther-Antonio
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55408-z

Denitrification Aligns with N2 Fixation in Red Sea Corals
Cited by: 24
Author(s): Arjen Tilstra, Yusuf C. El-Khaled, Florian Roth, Nils Rädecker, Claudia Pogoreutz, Christian R. Voolstra, Christian Wild
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-56290-5

Fungal and bacterial diversity of Svalbard subglacial ice
Cited by: 44
Author(s): Laura Perini, Cene Gostinčar, Nina Gunde‐Cimerman
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-57127-x

Integrative analysis of blood and gut microbiota data suggests a non-alcoholic fatty liver disease (NAFLD)-related disorder in French SLAdd minipigs
Cited by: 0
Author(s): Marco Moroldo, Peris M. Munyaka, Jérôme Lecardonnel, Gaëtan Lemonnier, Éric Venturi, Claire Chevaleyre, Isabelle P. Oswald, Jordi Estellé, Claire Rogel‐Gaillard
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-56741-z

Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments
Cited by: 27
Author(s): Alex Gobbi, Ifigeneia Kyrkou, Elisa Filippi, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-58402-y

Wheat dwarfing influences selection of the rhizosphere microbiome
Cited by: 41
Author(s): Vanessa Nessner Kavamura, Rebekah J. Robinson, David Hughes, Ian M. Clark, Maike Rossmann, I. S. de Melo, P. R. Hirsch, Rodrigo Mendes, Tim H. Mauchline
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-58525-2

Fine-scale species distribution modelling and genotyping by sequencing to examine hybridisation between two narrow endemic plant species
Cited by: 11
Author(s): JE Ball, Todd Robinson, Grant Wardell‐Johnson, Jessica Bovill, Margaret Byrne, Paul Nevill
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-58863-1

Wild blueberry proanthocyanidins shape distinct gut microbiota profile and influence glucose homeostasis and intestinal phenotypes in high-fat high-sucrose fed mice
Cited by: 76
Author(s): Maria Carolina Rodríguez-Daza, Laurence Daoust, Lemia Boutkrabt, Geneviève Pilon, Thibault Varin, Stéphanie Dudonné, Émile Lévy, André Marette, Denis Roy, Yves Desjardins
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-59104-1

Toxic tall fescue grazing increases susceptibility of the Angus steer fecal microbiota and plasma/urine metabolome to environmental effects
Cited by: 10
Author(s): Ryan S. Mote, Nicholas S. Hill, Joseph H. Skarlupka, ViLinh Tran, Douglas I. Walker, Zachary B. Turner, Zachary P. Sanders, Dean P. Jones, Garret Suen, Nikolay M. Filipov
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-59878-4

A comparison of bee communities between primary and mature secondary forests in the longleaf pine ecosystem
Cited by: 12
Author(s): Michael D. Ulyshen, Scott Pokswinski, J. Kevin Hiers
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60131-1

Fecal bacteria and metabolite responses to dietary lysozyme in a sow model from late gestation until lactation
Cited by: 11
Author(s): Shengyu Xu, Jiankai Shi, Yanpeng Dong, Zimei Li, Xiaoling Wu, Yan Lin, Lianqiang Che, Jian Li, Bin Feng, Zhengfeng Fang, Yong Zhuo, Jianping Wang, De Wu, Zhihua Ren, Yanping Shen
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60449-w

Characterization of intratissue bacterial communities and isolation of Escherichia coli from oral lichen planus lesions
Cited by: 16
Author(s): Keumjin Baek, Jaewon Lee, Ahreum Lee, Jun-Ho Lee, Hye‐Jung Yoon, Hee Kyung Park, Jongsik Chun, Youngnim Choi
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60362-2

Ganoderma lucidum cultivation affect microbial community structure of soil, wood segments and tree roots
Cited by: 14
Author(s): Fei Ren, Yuguang Zhang, Hai Yu, Yong-An Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60591-5

Insect pollination: an ecological process involved in the assembly of the seed microbiota
Cited by: 27
Author(s): Alberto Prado, Brice Marolleau, Bernard Vaissière, Matthieu Barret, Gloria Torres-Cortés
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60052-z

Enrichment and characterisation of ethanol chain elongating communities from natural and engineered environments
Cited by: 24
Author(s): Pieter Candry, Shengle Huang, José M. Carvajal-Arroyo, Korneel Rabaey, Ramón Ganigué
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-60862-1

Difference in post-stress recovery of the gut microbiome and its altered metabolism after chronic adolescent stress in rats
Cited by: 19
Author(s): Mengyang Xu, Chen Wang, Kristen N. Krolick, Haifei Shi, Jiangjiang Zhu
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-61407-2

Effects of enrofloxacin treatment on the bacterial microbiota of milk from goats with persistent mastitis
Cited by: 10
Author(s): Richard Costa Polveiro, Pedro Marcus Pereira Vidigal, Tiago Antônio de Oliveira Mendes, Ricardo Seiti Yamatogi, Magna Coroa Lima, Maria Aparecida Scatamburlo Moreira
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-93345-y

Gut microbiota signature of pathogen-dependent dysbiosis in viral gastroenteritis
Cited by: 20
Author(s): Taketoshi Mizutani, Samuel Yaw Aboagye, Aya Ishizaka, Theophilus Afum, Gloria Ivy Mensah, Adwoa Asante-Poku, Diana Asema Asandem, Prince Kofi Parbie, Christopher Zaab-Yen Abana, Dennis Kushitor, Evelyn Yayra Bonney, Masatoshi Adachi, Hiroki Hori, Koichi Ishikawa, Tetsuro Matano, Kiyosu Taniguchi, David Opare, Doris Arhin, Franklin Asiedu-Bekoe, William Ampofo, Dorothy Yeboah-Manu, Kwadwo A. Koram, Abraham K. Anang, Hiroshi Kiyono
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-93031-z

Fecal sample collection methods and time of day impact microbiome composition and short chain fatty acid concentrations
Cited by: 25
Author(s): Jacquelyn Jones, Stacey N. Reinke, Alishum Ali, Debra J. Palmer, Claus T. Christophersen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92613-1

Historical contingency impacts on community assembly and ecosystem function in chemosynthetic marine ecosystems
Cited by: 1
Author(s): Dimitri Kalenitchenko, Erwan Péru, Pierre E. Galand
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94096-6

Coral larval settlement preferences linked to crustose coralline algae with distinct chemical and microbial signatures
Cited by: 28
Author(s): Hendrikje Jorissen, Pierre E. Galand, Isabelle Bonnard, Sonora S. Meiling, Delphine Raviglione, Anne-Leïla Meistertzheim, Laëtitia Hédouin, Bernard Banaigs, Claude Payri, Maggy M. Nugues
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-93668-w

Microplastic contamination of the drilling bivalve Hiatella arctica in Arctic rhodolith beds
Cited by: 12
Author(s): Sebastian Teichert, Martin G. J. Löder, Ines Pyko, Marlene Mordek, Christian Schulbert, Max Wisshak, Christian Laforsch
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94636-0

The use of diversity indices for local assessment of marine sediment quality
Cited by: 3
Author(s): Shinya Hosokawa, Kyosuke Momota, Anthony A. Chariton, Ryoji Naito, Yoshiyuki Nakamura
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-95409-5

Association between clinical and environmental factors and the gut microbiota profiles in young South African children
Cited by: 5
Author(s): Kristien Nel Van Zyl, Andrew Whitelaw, Anneke C. Hesseling, James A Seddon, Anne-Marie Demers, Mae Newton-Foot
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-96831-5

Spatiotemporal effects on dung beetle activities in island forests-home garden matrix in a tropical village landscape
Cited by: 3
Author(s): G. Asha, K. Manoj, P. P. Megha, Palatty Allesh Sinu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-97261-z

The gastric microbiota in patients with Crohn’s disease; a preliminary study
Cited by: 3
Author(s): Jerzy Ostrowski, Maria Kulecka, Iwona Zawada, Natalia Żeber‐Lubecka, Agnieszka Paziewska, Katarzyna Graca-Pakulska, Krzysztof Dąbkowski, Karolina Skubisz, Patrycja Cybula, Filip Ambrożkiewicz, Elżbieta Urasińska, Michał Mikula, Teresa Starzyńska
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-96339-y

Lactobacillus crispatus thrives in pregnancy hormonal milieu in a Nigerian patient cohort
Cited by: 11
Author(s): Nkechi Martina Odogwu, Chinedum Amara Onebunne, Jun Chen, Funmilola A. Ayeni, Marina Walther-Antonio, Oladapo Olayemi, Nicholas Chia, Akinyinka Omigbodun
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-98587-4

Vaginal microbiome as a tool for prediction of chorioamnionitis in preterm labor: a pilot study
Cited by: 6
Author(s): Daichi Urushiyama, Eriko Ohnishi, Wataru Suda, Masamitsu Kurakazu, Chihiro Kiyoshima, Tsubasa Hirakawa, Koichiro Miyata, Fusanori Yotsumoto, Kazuki Nabeshima, Takashi Setoue, Shinichiro Nagamitsu, Masahira Hattori, Kenichiro Hata, Shingo Miyamoto
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-98248-6

Ruminant fat intake improves gut microbiota, serum inflammatory parameter and fatty acid profile in tissues of Wistar rats
Cited by: 2
Author(s): Larissa de Brito Medeiros, Susana P. Alves, Rui J.B. Bessa, Juliana Késsia Barbosa Soares, Camila Neves Meireles Costa, Jailane de Souza Aquino, Gerlane Coelho Bernardo Guerra, Daline Fernandes de Souza Araújo, Lydiane Tavares Toscano, Alexandre Silva, Adriano Francisco Alves, Mateus Lacerda Pereira Lemos, Wydemberg J. Araújo, Ariosvaldo Nunes de Medeiros, Celso José Bruno de Oliveira, Rita de Cássia Ramos do Egypto Queiroga
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-98380-3

Endometrial microbiota is more diverse in people with endometriosis than symptomatic controls
Cited by: 16
Author(s): Jocelyn M. Wessels, Miguel Ángel Domínguez, Nicholas Leyland, Sanjay Agarwal, Warren G. Foster
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-98958-x

Effectiveness of human-origin Lactobacillus plantarum PL-02 in improving muscle mass, exercise performance and anti-fatigue
Cited by: 20
Author(s): Mon-Chien Lee, Yi-Ju Hsu, Hao-Chung Ho, Yi‐Wei Kuo, Wen‐Yang Lin, Shin-Yu Tsai, Weiling Chen, Che-Li Lin, Chi‐Chang Huang
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-98976-9

Coral micro- and macro-morphological skeletal properties in response to life-long acclimatization at CO2 vents in Papua New Guinea
Cited by: 6
Author(s): Fiorella Prada, Leonardo Brizi, Silvia Franzellitti, Stefano Mengoli, Simona Fermani, Iryna Polishchuk, Nicola Baraldi, Francesco Ricci, Quinzia Palazzo, Erik Caroselli, Boaz Pokroy, Loris Giorgini, Zvy Dubinsky, Paola Fantazzini, Giuseppe Falini, Stefano Goffredo, Katharina Fabricius
Software Mentions: 2
Published: about 3 years ago

10.1016/j.scitotenv.2018.08.101

Reducing water use by alternate-furrow irrigation with livestock wastewater reduces antibiotic resistance gene abundance in the rhizosphere but not in the non-rhizosphere
Cited by: 16
Author(s): Yuan Liu, Erping Cui, Andrew L. Neal, Xiaoxian Zhang, Zhongyang Li, Yatao Xiao, Zhenggang Du, Feng Gao, Xiucai Fan, Chao Hu
Software Mentions: 2
Published: almost 6 years ago

10.3390/s20216281

An Automated Pipeline for Image Processing and Data Treatment to Track Activity Rhythms of Paragorgia arborea in Relation to Hydrographic Conditions
Cited by: 15
Author(s): Ander Zuazo, Jordi Grinyó, Vanesa López-Vázquez, E. A. Rodríguez, Corrado Costa, Luciano Ortenzi, Sascha Flögel, Javier Valencia, Simone Marini, Guosong Zhang, Henning Wehde, Jacopo Aguzzi
Software Mentions: 2
Published: about 4 years ago

10.1038/s41392-021-00614-3

Metagenomic analysis reveals oropharyngeal microbiota alterations in patients with COVID-19
Cited by: 78
Author(s): Shengli Ma, Fan Zhang, Fengxia Zhou, Hui Li, Wenyu Ge, Rui Gan, Huan Nie, Biao Li, Yindong Wang, Meng Wu, Duo Li, Dongmei Wang, Zheng Wang, Yuhong You, Zhiwei Huang
Software Mentions: 2
Published: over 3 years ago

10.1186/2193-1801-3-391

Different pioneer plant species select specific rhizosphere bacterial communities in a high mountain environment
Cited by: 32
Author(s): Sonia Ciccazzo, Alfonso Esposito, Eleonora Rolli, Stefan Zerbe, Daniele Daffonchio, Lorenzo Brusetti
Software Mentions: 2
Published: over 10 years ago

10.1177/17562864211035657

Gut bacterial microbiota in patients with myasthenia gravis: results from the MYBIOM study
Cited by: 6
Author(s): Andreas Totzeck, Elakiya Ramakrishnan, Melina Schlag, Benjamin Stolte, Kathrin Kizina, Saskia Bolz, Andreas Thimm, Mark Stettner, Julian R. Marchesi, Jan Buer, Christoph Kleinschnitz, Hedda Luise Verhasselt, Tim Hagenacker
Software Mentions: 2
Published: almost 4 years ago

10.7150/thno.43528

Rhein modulates host purine metabolism in intestine through gut microbiota and ameliorates experimental colitis
Cited by: 152
Author(s): Jiawei Wu, Zhonghong Wei, Peng Cheng, Cheng Qian, Fangming Xu, Yang Yu, Aiyun Wang, Wenxing Chen, Ziying Sun, Lu Yin
Software Mentions: 2
Published: almost 5 years ago

10.3390/toxics9030054

Microbial Population Dynamics in Model Sewage Treatment Plants and the Fate and Effect of Gold Nanoparticles
Cited by: 3
Author(s): Karsten Schlich, Cecilia Díaz, Benjamin Gomez Pizarro, B Knopf, Ruben Schlinkert, Franziska Wege, Anne Jurack, Kerstin Hund‐Rinke
Software Mentions: 2
Published: over 3 years ago

10.3390/toxics9050093

Total and Metabolically Active Microbial Community of Aerobic Granular Sludge Systems Operated in Sequential Batch Reactors: Effect of Pharmaceutical Compounds
Cited by: 7
Author(s): Barbara Muñoz-Palazón, Aurora Rosa-Masegosa, Miguel Hurtado-Martinez, Alejandro Rodríguez-Sánchez, Alexander Link, Ramiro Vílchez-Vargas, Alejandro González‐Martínez, José Manuel López López
Software Mentions: 2
Published: over 3 years ago

10.3390/toxins7051431

Links between Genetic Groups, Indole Alkaloid Profiles and Ecology within the Grass-Parasitic Claviceps purpurea Species Complex
Cited by: 26
Author(s): Mariell Negård, Silvio Uhlig, Hävard Kauserud, Tom Andersen, Klaus Høiland, Trude Vrålstad
Software Mentions: 2
Published: over 9 years ago

10.3390/toxins12090580

Is a Central Sediment Sample Sufficient? Exploring Spatial and Temporal Microbial Diversity in a Small Lake
Cited by: 10
Author(s): Barbara Weisbrod, Susanna A. Wood, Konstanze Steiner, Ruby Whyte-Wilding, Jonathan Puddick, Olivier Laroche, Daniel R. Dietrich
Software Mentions: 2
Published: about 4 years ago

10.1038/s41398-020-0774-1

Minocycline-induced microbiome alterations predict cafeteria diet-induced spatial recognition memory impairments in rats
Cited by: 18
Author(s): Sarah‐Jane Leigh, Nadeem O. Kaakoush, R. Frederick Westbrook, Margaret J. Morris
Software Mentions: 2
Published: over 4 years ago

10.1186/s41182-020-00291-y

Diarrhea prevalence in a randomized, controlled prospective trial of point-of-use water filters in homes and schools in the Dominican Republic
Cited by: 13
Author(s): Nathan L. Tintle, Kristin Van De Griend, Rachel Ulrich, Randall D. Wade, Tena Baar, Emma Boven, Carolyn E. A. Cooper, Olivia Couch, Lauren Eekhoff, Benjamin Fry, Grace K. Goszkowicz, Maya A. Hecksel, Adam Heynen, Jade A. Laughlin, Sydney M. Les, Taylor R. Lombard, Bradley Munson, Jonas M. Peterson, Eric Schumann, Daniel J. Settecerri, Jacob E. Spry, Matthew J. Summerfield, Meghana Sunder, Daniel Wade, Caden G. Zonnefeld, Sarah A. Brokus, Francesco S. Moen, Adam Slater, Jonathan W. Peterson, Michael J. Pikaart, Brent P. Krueger, Aaron A. Best
Software Mentions: 2
Published: almost 4 years ago

10.1128/mBio.01135-14

Spatial-Temporal Survey and Occupancy-Abundance Modeling To Predict Bacterial Community Dynamics in the Drinking Water Microbiome
Cited by: 145
Author(s): Ameet J. Pinto, Joanna L. Schroeder, Mary Lunn, William T. Sloan, Lutgarde Raskin
Software Mentions: 2
Published: over 10 years ago

10.1128/mBio.01072-16

Disease Severity and Immune Activity Relate to Distinct Interkingdom Gut Microbiome States in Ethnically Distinct Ulcerative Colitis Patients
Cited by: 71
Author(s): J H Mar, Brandon LaMere, David L. Lin, Sophia Levan, Michelle Nazareth, Uma Mahadevan, Susan V. Lynch
Software Mentions: 2
Published: about 8 years ago

10.1128/mBio.01348-18

Ecophylogenetics Clarifies the Evolutionary Association between Mammals and Their Gut Microbiota
Cited by: 59
Author(s): Christopher A. Gaulke, Holly K. Arnold, Ian R. Humphreys, Steven W. Kembel, James P. O’Dwyer, Thomas J. Sharpton
Software Mentions: 2
Published: about 6 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292