cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-70141-8

Influence of 16S rRNA target region on the outcome of microbiome studies in soil and saliva samples
Cited by: 20
Author(s): Ana Soriano‐Lerma, Virginia Pérez-Carrasco, M. Sánchez‐Marañón, Matilde Ortiz-González, Victoria Sánchez-Martín, J Gijón, José María Navarro-Marí, José A. García‐Salcedo, Miguel Soriano
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0217609

Exploring the effects of COLOSTRONONI on the mammalian gut microbiota composition
Cited by: 6
Author(s): Sabrina Duranti, Leonardo Mancabelli, Walter Mancino, Rosaria Anzalone, Giulia Longhi, Rosario Statello, Luca Carnevali, Andrea Sgoifo, Sergio Bernasconi, Francesca Turroni, Marco Ventura
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-71422-y

Ethnic variation of oral microbiota in children
Cited by: 13
Author(s): Thyagaseely Sheela Premaraj, Raven Vella, Jennifer Chung, Qingqi Lin, Hunter Panier, Kori Underwood, Sundaralingam Premaraj, Yanjiao Zhou
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0066238

Large-Scale Variation in Combined Impacts of Canopy Loss and Disturbance on Community Structure and Ecosystem Functioning
Cited by: 43
Author(s): Tasman P. Crowe, Mathieu Cusson, Fabio Bulleri, Dominique Davoult, Francisco Arenas, Rebecca J. Aspden, Lisandro Benedetti‐Cecchi, Stanislao Bevilacqua, Irvine Davidson, Emma C. Defew, Simonetta Fraschetti, Claire Golléty, John N. Griffin, Kristjan Herkül, Jonne Kotta, Aline Migné, Markus Molis, Sophie K. Nicol, Laure M.-L. J. Noël, Isabel Sousa-Pinto, Nelson Valdivia, Stefano Vaselli, Stuart R. Jenkins
Software Mentions: 2
Published: about 13 years ago

10.1038/s41598-020-72011-9

Influence of host genetics in shaping the rumen bacterial community in beef cattle
Cited by: 31
Author(s): Waseem Abbas, Jeremy Howard, Henry A. Paz, Kristin E Hales, John W. Wells, L. A. Kuehn, Galen E. Erickson, Matthew L Spangler, Samodha C. Fernando
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-72032-4

Host phylogeny and life history stage shape the gut microbiome in dwarf (Kogia sima) and pygmy (Kogia breviceps) sperm whales
Cited by: 4
Author(s): Elizabeth R Denison, Ryan G. Rhodes, William A. McLellan, D. Ann Pabst, Patrick M. Erwin
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-71458-0

Investigation into the effect of divergent feed efficiency phenotype on the bovine rumen microbiota across diet and breed
Cited by: 18
Author(s): Emily McGovern, M. McGee, C.J. Byrne, David A. Kenny, A. K. Kelly, Sinéad M. Waters
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-72286-y

Contrasting microbiota profiles observed in children carrying either Blastocystis spp. or the commensal amoebas Entamoeba coli or Endolimax nana
Cited by: 18
Author(s): Juan F. Alzate, Miguel Toro-Londoño, Felipe Cabarcas, Gisela María García-Montoya, Ana Luz Galván-Díaz
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms8111694

Seasonal Patterns of Dominant Microbes Involved in Central Nutrient Cycles in the Subsurface
Cited by: 11
Author(s): Patrick Lohmann, Simon Benk, Gerd Gleixner, Karin Potthast, Beate Michalzik, Nico Jehmlich, Martin von Bergen
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-72679-z

Edaphic factors and plants influence denitrification in soils from a long-term arable experiment
Cited by: 1
Author(s): Ian M. Clark, Qingling Fu, Maïder Abadie, E. R. Dixon, Aimeric Blaud, P. R. Hirsch
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-73085-1

Distinct lung microbiota associate with HIV-associated chronic lung disease in children
Cited by: 8
Author(s): Sudha Bhadriraju, Douglas Fadrosh, Meera K. Shenoy, David L. Lin, Kole Lynch, Kathryn McCauley, Rashida A Ferrand, Edith Majonga, Grace McHugh, Laurence Huang, Susan V. Lynch, John Metcalfe
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0119966

Highly Heterogeneous Soil Bacterial Communities around Terra Nova Bay of Northern Victoria Land, Antarctica
Cited by: 32
Author(s): Min‐Cheol Kim, Ahnna Cho, Hyoun Soo Lim, Soon Gyu Hong, Jihee Kim, Joohan Lee, Taejin Choi, Tae-Seok Ahn, Ok-Sun Kim
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-020-74122-9

The influences of low protein diet on the intestinal microbiota of mice
Cited by: 18
Author(s): Hiroaki Masuoka, Wataru Suda, Eriko Tomitsuka, Chie Shindo, Lena Takayasu, Paul F. Horwood, Andrew R. Greenhill, Masahira Hattori, Masahiro Umezaki, Kazuhiro Hirayama
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-74193-8

Different types of agricultural land use drive distinct soil bacterial communities
Cited by: 15
Author(s): Shin Ae Lee, Jeong Myeong Kim, Yiseul Kim, Jae–Ho Joa, Seong-Soo Kang, Jae-Hyung Ahn, Min‐Cheol Kim, Jaekyeong Song, Hang-Yeon Weon
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-74678-6

Risk factors for type 1 diabetes, including environmental, behavioural and gut microbial factors: a case–control study
Cited by: 16
Author(s): Deborah Traversi, Ivana Rabbone, Giacomo Scaioli, Camilla Vallini, Giulia Carletto, Irene Racca, Ugo Ala, Marilena Durazzo, Alessandro Collo, Arianna Ferro, Deborah Carrera, Silvia Savastio, Francesco Cadario, Roberta Siliquini, Fránco Cerutti
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0171369

Inoculum composition determines microbial community and function in an anaerobic sequential batch reactor
Cited by: 21
Author(s): Alessandra Perrotta, Rajkumari Kumaraswamy, Juan‐Rodrigo Bastidas‐Oyanedel, Eric J. Alm, Jorge Rodríguez
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-75786-z

Desacetyl-α-MSH and α-MSH have sex specific interactions with diet to influence mouse gut morphology, metabolites and microbiota
Cited by: 2
Author(s): Bo Sun, Tommi Vatanen, Thilini N. Jayasinghe, Elizabeth McKenzie, Rinki Murphy, Justin M. O’Sullivan
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-76072-8

Effect of the similarity of gut microbiota composition between donor and recipient on graft function after living donor kidney transplantation
Cited by: 7
Author(s): Ji Eun Kim, Hyo Eun Kim, Hyun-Jeong Cho, Ji In Park, Min Jung Kwak, Byung Yong Kim, Seung Hee Yang, Jung Pyo Lee, Yon Su Kim, Kwon Wook Joo, Yon Su Kim, Bong Soo Kim, Hajeong Lee
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms7050123

Microbial and Functional Profile of the Ceca from Laying Hens Affected by Feeding Prebiotics, Probiotics, and Synbiotics
Cited by: 19
Author(s): C. Pineda-Quiroga, Daniel Borda-Molina, Diego Chaves‐Moreno, R. Ruíz, Raquel Atxaerandio, Amélia Camarinha‐Silva, A. García-Rodríguez
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-76590-5

Seasonal impact of grazing, viral mortality, resource availability and light on the group-specific growth rates of coastal Mediterranean bacterioplankton
Cited by: 9
Author(s): Olga Sánchez, Isabel Ferrera, Isabel Mabrito, Carlota R. Gazulla, Marta Sebastián, Adrià Auladell, Carolina Marín-Vindas, Clara Cardelús, Isabel Sanz-Sáez, Massimo C. Pernice, Cèlia Marrasé, M. Montserrat Sala, Josep M. Gasol
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-77313-6

Feed additives for the control of post-weaning Streptococcus suis disease and the effect on the faecal and nasal microbiota
Cited by: 13
Author(s): Florencia Correa‐Fiz, Carlos Neila‐Ibáñez, Sergio López-Soria, Sebastián Napp, Blanca Edelia González Martínez, Laia Sobrevia, Simon Tibble, Virginia Aragón, Lourdes Migura-García
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00261-18

Feed Restriction Modifies Intestinal Microbiota-Host Mucosal Networking in Chickens Divergent in Residual Feed Intake
Cited by: 26
Author(s): Barbara U. Metzler‐Zebeli, Sina-Catherine Siegerstetter, Elizabeth Magowan, Peadar G. Lawlor, Renée M. Petri, Niamh E. O ́Connell, Qendrim Zebeli
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00169-18

The Adenoids but Not the Palatine Tonsils Serve as a Reservoir for Bacteria Associated with Secretory Otitis Media in Small Children
Cited by: 19
Author(s): Helena Fagö-Olsen, Laura Marie Dines, Christian Hjort Sørensen, A. S. Jensen
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00271-18

Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota Profiling
Cited by: 99
Author(s): Zigui Chen, Pak Chun Hui, Michael K. Hui, Yun Kit Yeoh, Pak-Kin Wong, Max Kam-Kwan Chan, Martin Cs Wong, Siew C. Ng, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 2
Published: over 7 years ago

10.3390/nu12072088

Sex-Specific Differences in the Gut Microbiome in Response to Dietary Fiber Supplementation in IL-10-Deficient Mice
Cited by: 16
Author(s): Zhengxiao Zhang, Jae Eun Hyun, Aducio Thiesen, Heekuk Park, Naomi Hotte, Hikaru Watanabe, Takanobu Higashiyama, Karen Madsen
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00209-19

A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans
Cited by: 56
Author(s): Alfonso Benı́tez-Páez, Louise Kjølbæk, Eva M. Gómez del Pulgar, Lena K. Brahe, Arne Astrup, Silke Matysik, Hans-Frieder Schött, Sabrina Krautbauer, Gerhard Liebisch, Joanna Boberska, Sandrine P. Claus, Simone Rampelli, Patrizia Brigidi, Lesli H. Larsen, Yolanda Sanz
Software Mentions: 2
Published: about 7 years ago

10.1128/mSystems.00148-19

Multipartner Symbiosis across Biological Domains: Looking at the Eukaryotic Associations from a Microbial Perspective
Cited by: 6
Author(s): Marta Turon, María Jesús Uriz, Daniel Martín
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0137861

Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina
Cited by: 7
Author(s): Stacey Lynn DeAmicis, Andrew Foggo
Software Mentions: 2
Published: almost 11 years ago

10.1128/mSystems.00375-19

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis
Cited by: 23
Author(s): Alexey V. Melnik, Yoshiki Vázquez-Baeza, Alexander A. Aksenov, Embriette R. Hyde, Andrew C. McAvoy, Mingxun Wang, Ricardo R. da Silva, Ivan Protsyuk, Jason V. Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A. Quinn, Richard L. Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S. Brouha, Nuno Bandeira, Grace Lin, Forest Rohwer, Douglas Conrad, Theodore Alexandrov, Rob Knight, Pieter C. Dorrestein, Neha Garg
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.00374-19

Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental Changes
Cited by: 12
Author(s): Ximei Zhang, Eric R. Johnston, Yaosheng Wang, Qiang Yu, Dashuan Tian, Zhiping Wang, Yanqing Zhang, Daozhi Gong, Chun Luo, Wei Liu, Junjie Yang, Xingguo Han
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.00348-19

Timing of Calorie Restriction in Mice Impacts Host Metabolic Phenotype with Correlative Changes in Gut Microbiota
Cited by: 26
Author(s): Liying Zhang, Xinhe Xue, Rui Zhai, Xin Yang, Hui Li, Liping Zhao, Chenhong Zhang
Software Mentions: 2
Published: over 6 years ago

10.1111/mec.15090

Dietary partitioning promotes the coexistence of planktivorous species on coral reefs
Cited by: 27
Author(s): Matthieu Leray, Alice L. Alldredge, Jen‐Hao Yang, Christopher P. Meyer, Sally J. Holbrook, Russell J. Schmitt, Nancy Knowlton, Andrew J. Brooks
Software Mentions: 2
Published: over 7 years ago

10.3390/nu13072446

Administration with Quinoa Protein Reduces the Blood Pressure in Spontaneously Hypertensive Rats and Modifies the Fecal Microbiota
Cited by: 18
Author(s): Huimin Guo, Yuqiong Hao, Xin Fan, Aurore Richel, Nadia Everaert, Xiushi Yang
Software Mentions: 2
Published: about 5 years ago

10.1111/mec.15369

Environmental plasticity and colonisation history in the Atlantic salmon microbiome: A translocation experiment
Cited by: 52
Author(s): Tamsyn M. Uren Webster, Deiene Rodríguez‐Barreto, Giovanni Castaldo, Peter Gough, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 2
Published: over 6 years ago

10.1111/mec.14696

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels
Cited by: 33
Author(s): Mia M. Bengtsson, Karoline Wagner, Clarissa Schwab, Tim Urich, Tom J. Battin
Software Mentions: 2
Published: about 8 years ago

10.1128/mSystems.00055-20

Mucosal Microbiota and Metabolome along the Intestinal Tract Reveal a Location-Specific Relationship
Cited by: 23
Author(s): Ce Yuan, Melanie L. Graham, Christopher Staley, Subbaya Subramanian
Software Mentions: 2
Published: about 6 years ago

10.1007/s11033-020-05786-9

Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis
Cited by: 0
Author(s): Lukas Zangl, Hannes Oberreiter, Herbert Huss, Edith Stabentheiner, Christian Sturmbauer, Stephan Koblmüller
Software Mentions: 2
Published: almost 6 years ago

10.1093/molbev/msaa301

Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity
Cited by: 60
Author(s): Francisco J. Ruíz-Dueñas, J. M. Barrasa, Marisol Sánchez-García, Susana Camarero, Shingo Miyauchi, Ana Serrano, Dolores Linde, Rashid Babiker, Élodie Drula, Iván Ayuso‐Fernández, Remedios Pacheco, Guillermo Zermeño Padilla, Patricia Ferreira, Jorge Barriuso, Harald Kellner, Raúl Castanera, Manuel Alfaro, Lucı́a Ramı́rez, Antonio G. Pisabarro, Robert Riley, Alan Kuo, William Andreopoulos, Kurt LaButti, Jasmyn Pangilinan, Andrew Tritt, Anna Lipzen, Guifen He, Mi Yan, Vivian Ng, Igor V. Grigoriev, Daniel Cullen, Francis Martin, Marie‐Noëlle Rosso, Bernard Henrissat, David S. Hibbett, Ángel T. Martı́nez
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms9020342

Unveiling the Bovine Epimural Microbiota Composition and Putative Function
Cited by: 22
Author(s): Cátia Pacífico, Renée M. Petri, Sara Ricci, Elsayed Mickdam, Stefanie U. Wetzels, Viktoria Neubauer, Qendrim Zebeli
Software Mentions: 2
Published: over 5 years ago

10.1093/molbev/msw119

Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent<i>Symbiodinium</i>Thermal Tolerances
Cited by: 110
Author(s): Rachel A. Levin, Victor H. Beltran, Ross Hill, Staffan Kjelleberg, Diane McDougald, Peter D. Steinberg, Madeleine J. H. van Oppen
Software Mentions: 2
Published: about 10 years ago

10.3390/microorganisms9020205

Taxonomic and Functional Diversity of Heterotrophic Protists (Cercozoa and Endomyxa) from Biological Soil Crusts
Cited by: 15
Author(s): Samira Khanipour Roshan, Kenneth Dumack, Michael Bonkowski, Peter Leinweber, Ulf Karsten, Karin Glaser
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00901-19

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Cited by: 68
Author(s): Bryn C. Taylor, Franck Lejzerowicz, Marion Poirel, Justin P. Shaffer, Lingjing Jiang, Alexander A. Aksenov, Nicole S. Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller‐Montgomery, Pieter C. Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00626-20

The Behavior of Amphibians Shapes Their Symbiotic Microbiomes
Cited by: 17
Author(s): Liangliang Xu, Mengmeng Xiang, Wei Zhu, Mengjie Zhang, Hua Chen, Jin Huang, Youhua Chen, Qing Chang, Jianping Jiang, Lifeng Zhu
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms8020265

Comparative Analysis of Fecal Microbiota in Grasscutter (Thryonomys swinderianus) and Other Herbivorous Livestock in Ghana
Cited by: 2
Author(s): Kiyonori Kawasaki, Kenji Ohya, Tsutomu Omatsu, Yukie Katayama, Yasuhiro Takashima, Tsuyoshi Kinoshita, Justice Opare Odoi, Kotaro Sawai, Hideto Fukushi, Hirohito Ogawa, Miho Inoue‐Murayama, Tetsuya Mizutani, Christopher Adenyo, Yoshiki Matsumoto, Boniface B. Kayang
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00782-20

Marine Sediments Hold an Untapped Potential for Novel Taxonomic and Bioactive Bacterial Diversity
Cited by: 21
Author(s): Pernille Kjersgaard Bech, Klaus Lars Lysdal, Lone Gram, Mikkel Bentzon-Tilia, Mikael Lenz Strube
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0131944

Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine
Cited by: 42
Author(s): Daniel N. Frank, Elise S. Bales, Jenifer Monks, Matthew J. Jackman, Paul S. MacLean, Diana Ir, Charles E. Robertson, David J. Orlicky, James L. McManaman
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0177083

Atoll-scale patterns in coral reef community structure: Human signatures on Ulithi Atoll, Micronesia
Cited by: 9
Author(s): Nicole L. Crane, Peter A. Nelson, Avigdor Abelson, Kristin Precoda, John Rulmal, Giacomo Bernardi, Michelle J. Paddack
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0222824

Lipid and fatty acid dynamics by maternal Pacific bluefin tuna
Cited by: 10
Author(s): Yosuke Hiraoka, Yumi Okochi, Seiji Ohshimo, Tamaki Shimose, Hiroshi Ashida, Takuya Sato, Yasuhiro Ando
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0242965

Destabilizing effects on a classic tri-trophic oyster-reef cascade
Cited by: 4
Author(s): Virginia R. Schweiss, Chet F. Rakocinski
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8030347

Aflatoxins: Occurrence, Exposure, and Binding to Lactobacillus Species from the Gut Microbiota of Rural Ugandan Children
Cited by: 12
Author(s): Alex Paul Wacoo, Prudence Atukunda, Grace Kyamazima Mehangye Muhoozi, Martin Braster, Marijke J. Wagner, Tim van den Broek, Wilbert Sybesma, Ane C. Westerberg, Per Ole Iversen, Remco Kort
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0092401

Effect of Redox Conditions on Bacterial Community Structure in Baltic Sea Sediments with Contrasting Phosphorus Fluxes
Cited by: 12
Author(s): Anne K. Steenbergh, Paul L. E. Bodelier, Caroline P. Slomp, Hendrikus J. Laanbroek
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0220268

Species composition of sand flies (Diptera: Psychodidae) in caves of Quadrilátero Ferrífero, state of Minas Gerais, Brazil
Cited by: 10
Author(s): Aldenise Martins Campos, Rodrigo dos Anjos Maia, Débora Capucci, Adriano Pereira Paglia, José Dilermando Andrade Filho
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0199343

Seasonality modulates the predictive skills of diatom based salinity transfer functions
Cited by: 5
Author(s): Alejandra Goldenberg-Vilar, Timme H. Donders, Aleksandra Cvetkoska, Friederike Wagner-Cremer
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0193671

Evaluation of milk sample fractions for characterization of milk microbiota from healthy and clinical mastitis cows
Cited by: 49
Author(s): Svetlana Lima, M.L.S. Bicalho, R.C. Bicalho
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0044114

Recovery of Benthic Megafauna from Anthropogenic Disturbance at a Hydrocarbon Drilling Well (380 m Depth in the Norwegian Sea)
Cited by: 36
Author(s): Andrew R. Gates, Daniel O. B. Jones
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0252242

Influence of seasonal changes and salinity on spinach phyllosphere bacterial functional assemblage
Cited by: 3
Author(s): A. Mark Ibekwe, Selda Örs, Jorge Ferreira, Xuan Li, Donald L. Suarez
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms9081687

Altered Fecal Microbiotas and Organic Acid Concentrations Indicate Possible Gut Dysbiosis in University Rugby Players: An Observational Study
Cited by: 3
Author(s): So Morishima, Nobuyuki Oda, Hiromi Ito, Tomohiro Segawa, Machi Oda, Takamitsu Tsukahara, Yasuharu Kawase, Tomohisa Takagi, Yuji Naito, Mami Fujibayashi, Ryo Inoüe
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0250695

Description and comparison of the skin and ear canal microbiota of non-allergic and allergic German shepherd dogs using next generation sequencing
Cited by: 6
Author(s): Neoklis Apostolopoulos, Stefanie P. Glaeser, Ruchi Bagwe, Stefan Janssen, Ursula Mayer, Christa Ewers, Peter Kämpfer, Reto Neiger, Nina Thom
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0225933

Host-mediated microbiome engineering (HMME) of drought tolerance in the wheat rhizosphere
Cited by: 72
Author(s): Michael D. Jochum, Kelsey McWilliams, Elizabeth A. Pierson, Young‐Ki Jo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0142536

Antepartum Antibiotic Treatment Increases Offspring Susceptibility to Experimental Colitis: A Role of the Gut Microbiota
Cited by: 117
Author(s): Peris M. Munyaka, Nour Eissa, Çharles N. Bernstein, Ehsan Khafipour, Jean–Eric Ghia
Software Mentions: 2
Published: almost 11 years ago

10.3390/cancers12092619

Alterations in Gastric Microbial Communities Are Associated with Risk of Gastric Cancer in a Korean Population: A Case-Control Study
Cited by: 10
Author(s): Madhawa Gunathilake, Jeonghee Lee, Il Ju Choi, Young Il Kim, Jaekyung Yoon, Woo Jun Sul, Jihyun F. Kim, Jeongseon Kim
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers13133332

Colorectal Cancer Patients Have Four Specific Bacterial Species in Oral and Gut Microbiota in Common—A Metagenomic Comparison with Healthy Subjects
Cited by: 18
Author(s): Yoshinori Uchino, Yuichi Goto, Yusuke Konishi, Kan Tanabe, Hiroko Toda, Mitsuru Wada, Yoshiaki Kita, Mahiro Beppu, Shinichiro Mori, Hiroshi Hara, Takao Otsuka, Shoji Natsugoe, Eiji Hara, Tetsuro Sugiura
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00542-20

Phages versus Antibiotics To Treat Infected Diabetic Wounds in a Mouse Model: a Microbiological and Microbiotic Evaluation
Cited by: 12
Author(s): Jean‐François Huon, Emmanuel Montassier, Anne-Gaëlle Leroy, Matthieu Grégoire, Marie-Anne Vibet, Jocelyne Caillon, David Boutoille, Dominique Navas
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0178228

Impact of maintenance immunosuppressive therapy on the fecal microbiome of renal transplant recipients: Comparison between an everolimus- and a standard tacrolimus-based regimen
Cited by: 44
Author(s): Gianluigi Zaza, Alessandra Dalla Gassa, Giovanna E. Felis, Simona Granata, Sandra Torriani, Antonio Lupo
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0172064

The influence of resilience-based management on coral reef monitoring: A systematic review
Cited by: 29
Author(s): Vivian Lam, Christopher Doropoulos, Peter J. Mumby
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0226159

Low-diversity bacterial microbiota in Southern Ocean representatives of lanternfish genera Electrona, Protomyctophum and Gymnoscopelus (family Myctophidae)
Cited by: 10
Author(s): Alison Gallet, Philippe Koubbi, Nelly Léger, Mathilde Scheifler, Magdalena Ruiz‐Rodríguez, Marcelino T. Suzuki, Yves Desdevises, Sébastien Duperron
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0131598

Spatial Patterns and Temperature Predictions of Tuna Fatty Acids: Tracing Essential Nutrients and Changes in Primary Producers
Cited by: 51
Author(s): Heidi Pethybridge, Christopher C. Parrish, John R. Morrongiello, Jock Young, Jessica Farley, Rasanthi M. Gunasekera, Peter D. Nichols
Software Mentions: 2
Published: about 11 years ago

10.3390/microorganisms8071011

Autoimmune Hepatitis: Shifts in Gut Microbiota and Metabolic Pathways among Egyptian Patients
Cited by: 26
Author(s): Nahla M Elsherbiny, Mohammed Rammadan, Elham Ahmed Hassan, Marfoua S. Ali, Abeer S. Abd El-Rehim, Wael A. Abbas, Mohamed A A Abozaid, Ebtisam Hassanin, Helal F Hetta
Software Mentions: 2
Published: about 6 years ago

10.3390/cells7120269

Proteogenomic Analysis of Burkholderia Species Strains 25 and 46 Isolated from Uraniferous Soils Reveals Multiple Mechanisms to Cope with Uranium Stress
Cited by: 15
Author(s): Meenakshi Agarwal, Ashish Pathak, Rajesh Rathore, Om Prakash, Rakesh Singh, Rajneesh Jaswal, John C. Seaman, Ashvini Chauhan
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0102609

Nutrient Addition Dramatically Accelerates Microbial Community Succession
Cited by: 83
Author(s): Joseph E. Knelman, Steven K. Schmidt, Ryan C. Lynch, John L. Darcy, Sarah C. Castle, Cory C. Cleveland, Diana R. Nemergut
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0220958

Redefining species concepts for the Pennsylvanian scissor tooth shark, Edestus
Cited by: 1
Author(s): Leif Tapanila, Jesse Pruitt
Software Mentions: 2
Published: almost 7 years ago

10.3390/cells10040823

A New Strain of Christensenella minuta as a Potential Biotherapy for Obesity and Associated Metabolic Diseases
Cited by: 31
Author(s): Wilfrid Mazier, Katy Le Corf, Ccori Martinez, Héloïse Tudela, Déborah Kissi, Camille Kropp, Chrislain Coubard, Marion Soto, Frédéric Elustondo, Georges Rawadi, Sandrine P. Claus
Software Mentions: 2
Published: over 5 years ago

10.1007/s00049-018-0257-5

Methyl-ketones in the scent glands of Opiliones: a chemical trait of cyphophthalmi retrieved in the dyspnoan Nemastoma triste
Cited by: 2
Author(s): Miriam Schaider, Tone Novak, Christian Komposch, Hans Jörg Leis, Günther Raspotnig
Software Mentions: 2
Published: over 8 years ago

10.1007/s00049-019-00288-y

The scent gland chemistry of neogoveid cyphophthalmids (Opiliones): an unusual methyljuglone from Metasiro savannahensis
Cited by: 1
Author(s): Günther Raspotnig, Felix Anderl, Ronald M. Clouse
Software Mentions: 2
Published: almost 7 years ago

10.1002/cre2.139

Microbial and inflammatory‐based salivary biomarkers of head and neck squamous cell carcinoma
Cited by: 37
Author(s): Anna Vesty, Kim Gear, Kristi Biswas, Fiona J. Radcliff, Michael W. Taylor, Richard Douglas
Software Mentions: 2
Published: almost 8 years ago

10.1093/cid/ciab207

<i>Megasphaera</i> in the Stool Microbiota Is Negatively Associated With Diarrheal Cryptosporidiosis
Cited by: 27
Author(s): Maureen A. Carey, Gregory L. Medlock, Masud Alam, Mamun Kabir, Uddin Mj, Uma Nayak, Jason A. Papin, Abu Syed Golam Faruque, Rashidul Haque, William A. Petri, Carol A. Gilchrist
Software Mentions: 2
Published: over 5 years ago

10.1186/s13601-020-00345-8

Fungal and bacterial microbiome dysbiosis and imbalance of trans-kingdom network in asthma
Cited by: 29
Author(s): Chengjie Huang, Yaling Yu, Wei Du, Yahui Liu, Ranran Dai, Wei Tang, Ping Wang, Chenhong Zhang, Guochao Shi
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0084210

Soil Bacterial Communities Respond to Mowing and Nutrient Addition in a Steppe Ecosystem
Cited by: 47
Author(s): Ximei Zhang, Quansheng Chen, Xingguo Han
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0216785

Variability in the functional composition of coral reef fish communities on submerged and emergent reefs in the central Great Barrier Reef, Australia
Cited by: 8
Author(s): Amanda Cooper, Chancey MacDonald, Thomas E. Roberts, Tom C. L. Bridge
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-020-01587-9

A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors
Cited by: 3
Author(s): Takehiro Kazama, Jotaro Urabe, Masato Yamamichi, Kotaro Tokita, Xia Yin, Izumi Katano, Hideyuki Doi, Takehito Yoshida, Nelson G. Hairston
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-021-02249-0

Supplier-origin mouse microbiomes significantly influence locomotor and anxiety-related behavior, body morphology, and metabolism
Cited by: 12
Author(s): Aaron C. Ericsson, Marcia L. Hart, Jessica Y. Kwan, Louise Lanoue, Lynette Bower, Renee Araiza, Kevin C K Lloyd, Craig L. Franklin
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-021-01961-1

Multiple impacts of microplastics can threaten marine habitat-forming species
Cited by: 53
Author(s): Cinzia Corinaldesi, Sara Canensi, Antonio Dell’Anno, Michael Tangherlini, Iole Di Capua, Stefano Varrella, Trevor J. Willis, Carlo Cerrano, Roberto Danovaro
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-0859-7

The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children
Cited by: 17
Author(s): Derick Nii Mensah Osakunor, Patrick Munk, Takafira Mduluza, Thomas Nordahl Petersen, Christian Brinch, Alasdair Ivens, Theresa Chimponda, Seth Amanfo, Joanne F. Murray, Mark Woolhouse, Frank Møller Aarestrup, Francisca Mutapi
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-020-0912-6

Human access impacts biodiversity of microscopic animals in sandy beaches
Cited by: 24
Author(s): Alejandro Martínez, Ester M. Eckert, Tom Artois, G.M. Careddu, Marco Casu, Vittorio Gazale, Stefan Gobert, Viatcheslav N. Ivanenko, Ulf Jondelius, Marinella Marzano, Graziano Pesole, Aldo Zanello, Mary Antonio Donatello Todaro, Diego Fontaneto
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms8111699

The Diversity, Composition, and Putative Functions of Gill-Associated Bacteria of Bathymodiolin Mussel and Vesicomyid Clam from Haima Cold Seep, South China Sea
Cited by: 6
Author(s): Juan Ling, Huashi Guan, Lihua Liu, Jun Tao, Jie Li, Jinyun Dong, Si Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0126931

Changes in Gut Microbiota in Rats Fed a High Fat Diet Correlate with Obesity-Associated Metabolic Parameters
Cited by: 321
Author(s): Virginie Lecomte, Nadeem O. Kaakoush, Chris Maloney, Mukesh Raipuria, Karina D. Huinao, Hazel M. Mitchell, Margaret J. Morris
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0176865

Nectar sugars and amino acids in day- and night-flowering Nicotiana species are more strongly shaped by pollinators’ preferences than organic acids and inorganic ions
Cited by: 37
Author(s): Kira Tiedge, Gertrud Lohaus
Software Mentions: 2
Published: over 9 years ago

10.1186/s12915-017-0459-2

A multi-trait systems approach reveals a response cascade to bleaching in corals
Cited by: 42
Author(s): Stephanie G. Gardner, Jean-Baptiste Raina, Matthew R. Nitschke, Daniel A. Nielsen, Michael Stat, Cherie A. Motti, Peter J. Ralph, Katherina Petrou
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0061516

Investigation of the Effect of Type 2 Diabetes Mellitus on Subgingival Plaque Microbiota by High-Throughput 16S rDNA Pyrosequencing
Cited by: 92
Author(s): Mi Zhou, Ruichen Rong, Daniel Munro, Chunxia Zhu, Xiang Gao, Qi Zhang, Qunfeng Dong
Software Mentions: 2
Published: over 13 years ago

10.3390/toxics9030054

Microbial Population Dynamics in Model Sewage Treatment Plants and the Fate and Effect of Gold Nanoparticles
Cited by: 3
Author(s): Karsten Schlich, Cecilia Díaz, Benjamin Gomez Pizarro, B Knopf, Ruben Schlinkert, Franziska Wege, Anne Jurack, Kerstin Hund‐Rinke
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.1434

Dynamics in benthic community composition and influencing factors in an upwelling-exposed coral reef on the Pacific coast of Costa Rica
Cited by: 11
Author(s): Ines Stuhldreier, Celeste Sánchez-Noguera, Florian Roth, Carlos Jiménez, Tim Rixen, Jorge Cortés, Christian Wild
Software Mentions: 2
Published: almost 11 years ago

10.3390/toxics9050093

Total and Metabolically Active Microbial Community of Aerobic Granular Sludge Systems Operated in Sequential Batch Reactors: Effect of Pharmaceutical Compounds
Cited by: 7
Author(s): Barbara Muñoz-Palazón, Aurora Rosa-Masegosa, Miguel Hurtado-Martinez, Alejandro Rodríguez-Sánchez, Alexander Link, Ramiro Vílchez-Vargas, Alejandro González‐Martínez, José Manuel López López
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.4060

Evaluating the role of wild songbirds or rodents in spreading avian influenza virus across an agricultural landscape
Cited by: 5
Author(s): Derek D. Houston, Shahan Azeem, Coady W. Lundy, Yuko Sato, Baoqing Guo, Julie A. Blanchong, Phillip C. Gauger, David R. Marks, Kyoung‐Jin Yoon, James S. Adelman
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0222327

Evaluating coral trophic strategies using fatty acid composition and indices
Cited by: 20
Author(s): Veronica Z. Radice, Michael T. Brett, Brian Fry, Michael D. Fox, Ove Høegh-Guldberg, Sophie Dove
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.10080

Spatial benthic community analysis of shallow coral reefs to support coastal management in Culebra Island, Puerto Rico
Cited by: 3
Author(s): Nicolás X. Gómez-Andújar, Edwin A. Hernández-Delgado
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0241447

Cerumen microbial community shifts between healthy and otitis affected dogs
Cited by: 8
Author(s): Giorgia Borriello, Rubina Paradiso, Carlotta Catozzi, Roberta Brunetti, P. Roccabianca, Marita Georgia Riccardi, Bianca Cecere, Cristina Lecchi, Giovanna Fusco, Fabrizio Ceciliani, Giorgio Galiero
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0225409

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
Cited by: 53
Author(s): Mehrdad Hajibabaei, Teresita M. Porter, Chloe Victoria Robinson, Donald J. Baird, Shadi Shokralla, Michael Wright
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.8903

Palustrine forested wetland vegetation communities change across an elevation gradient, Washington State, USA
Cited by: 2
Author(s): Nate Hough‐Snee
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.4111

Long‐term regeneration of a tropical plant community after sand mining
Cited by: 8
Author(s): Mário Luís Garbin, Flora Misaki, Poliana F. Ferreira, Karlo Gregório Guidoni‐Martins, Rayara B. Soares, Pierre Mariotte, Jerônimo Boelsums Barreto Sansevero, Patryck Gouvea Rocha, Ary G Silva
Software Mentions: 2
Published: over 8 years ago

10.3390/toxins7051431

Links between Genetic Groups, Indole Alkaloid Profiles and Ecology within the Grass-Parasitic Claviceps purpurea Species Complex
Cited by: 26
Author(s): Mariell Negård, Silvio Uhlig, Hävard Kauserud, Tom Andersen, Klaus Høiland, Trude Vrålstad
Software Mentions: 2
Published: over 11 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292