cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3389/fphys.2018.00272

Strongyle Infection and Gut Microbiota: Profiling of Resistant and Susceptible Horses Over a Grazing Season
Cited by: 45
Author(s): Allison Clark, Guillaume Sallé, Valentine Ballan, Fabrice Reigner, Annabelle Troegeler‐Meynadier, Jacques Cortet, Christine Koch, Mickaël Riou, Alexandra Blanchard, Núria Mach
Software Mentions: 3
Published: over 8 years ago

10.3389/fphys.2020.524833

Effects of Immunization With the Soil-Derived Bacterium Mycobacterium vaccae on Stress Coping Behaviors and Cognitive Performance in a “Two Hit” Stressor Model
Cited by: 10
Author(s): Christine L. Foxx, Jared D. Heinze, Antonio González, Fernando Vargas, Michael V. Baratta, Ahmed Elsayed, Jessica R. Stewart, Kelsey M. Loupy, Mathew R. Arnold, Michael C. Flux, Saydie A Sago, Philip H. Siebler, Lauren N. Milton, Margaret W. Lieb, James E. Hassell, David Glenn Smith, Kyo A K Lee, Sandra A. Appiah, Evan J. Schaefer, Morgan Panitchpakdi, Nicole Sikora, Kelly C. Weldon, Christopher E. Stamper, Dominic Schmidt, David A Duggan, Yosan M Mengesha, Mikale Ogbaselassie, Kadi T. Nguyen, Chloé A. Gates, K’Loni S. Schnabel, Linh Tran, Joslynn D Jones, Martha Hotz Vitaterna, Fred W. Turek, Monika Fleshner, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Christopher A. Lowry
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2021.645212

Exploration of Crucial Mediators for Carotid Atherosclerosis Pathogenesis Through Integration of Microbiome, Metabolome, and Transcriptome
Cited by: 9
Author(s): Lei Ji, Siliang Chen, Guangchao Gu, Jiawei Zhou, Wei Wang, Jinrui Ren, Jianhuang Wu, Dan Yang, Yuehong Zheng
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2020.00959

Effects of Six Sequential Charged Particle Beams on Behavioral and Cognitive Performance in B6D2F1 Female and Male Mice
Cited by: 21
Author(s): Jacob Raber, Andrea Fuentes Anaya, Eileen Ruth S. Torres, Joanne Lee, Sydney Weber Boutros, Dmytro Grygoryev, Austin Hammer, Kristin D. Kasschau, Thomas J. Sharpton, Mitchell S. Turker, Amy Kronenberg
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2016.00345

Above–Belowground Herbivore Interactions in Mixed Plant Communities Are Influenced by Altered Precipitation Patterns
Cited by: 29
Author(s): James M. W. Ryalls, Ben D. Moore, Markus Riegler, Scott N. Johnson
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2021.640829

Evaluation of Established Methods for DNA Extraction and Primer Pairs Targeting 16S rRNA Gene for Bacterial Microbiota Profiling of Olive Xylem Sap
Cited by: 13
Author(s): Carmen Haro, Manuel Anguita-Maeso, Madis Metsis, Juan A Navas‐Cortés, Blanca B. Landa
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0123220

Sharing the Space: Distribution, Habitat Segregation and Delimitation of a New Sympatric Area of Subterranean Rodents
Cited by: 22
Author(s): Bruno Busnello Kubiak, Daniel Galiano, Thales Renato Ochotorena de Freitas
Software Mentions: 3
Published: over 11 years ago

10.3390/microorganisms8101482

Seasonal Variations in Soil Microbiota Profile of Termite (Syntermes wheeleri) Mounds in the Brazilian Tropical Savanna
Cited by: 9
Author(s): Helena Ipe Pinheiro Guimaraes, Renata Henrique Santana, Rafaella Silveira Sousa, Otávio Henrique Bezerra Pinto, Betânia Ferraz Quirino, Cristine Chaves Barreto, Mercedes Maria da Cunha Bustamante
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2016.01053

Leaf Treatments with a Protein-Based Resistance Inducer Partially Modify Phyllosphere Microbial Communities of Grapevine
Cited by: 19
Author(s): Martina Cappelletti, Michele Perazzolli, Livio Antonielli, Andrea Nesler, E. Torboli, P. Bianchedi, Massimo Pindo, Gerardo Puopolo, I. Pertot
Software Mentions: 3
Published: about 10 years ago

10.3389/fpls.2017.00391

Phylogeny Predicts the Quantity of Antimalarial Alkaloids within the Iconic Yellow Cinchona Bark (Rubiaceae: Cinchona calisaya)
Cited by: 35
Author(s): Carla Maldonado, Christopher J. Barnes, Claus Cornett, Else Holmfred, Steen Honoré Hansen, Claes Persson, Alexandre Antonelli, Nina Rønsted
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0147058

Human-Induced Landscape Changes Homogenize Atlantic Forest Bird Assemblages through Nested Species Loss
Cited by: 19
Author(s): Marcelo Alejandro Villegas Vallejos, André Andrian Padial, Jean Ricardo Simões Vitule
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2020.520834

In-Depth Observation on the Microbial and Fungal Community Structure of Four Contrasting Tomato Cultivation Systems in Soil Based and Soilless Culture Systems
Cited by: 7
Author(s): Oliver Grunert, Emma Hernandez-Sanabria, Saskia Buysens, Stefaan De Neve, Marie-Christine Van Labeke, Dirk Reheul, Nico Boon
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2019.00932

Facilitation of Balsam Fir by Trembling Aspen in the Boreal Forest: Do Ectomycorrhizal Communities Matter?
Cited by: 8
Author(s): Mélissande Nagati, Mélanie Roy, Annie DesRochers, Sophie Manzi, Yves Bergeron, Monique Gardes
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0223629

Microbiomes in the insectivorous bat species Mops condylurus rapidly converge in captivity
Cited by: 16
Author(s): Kathryn M. Edenborough, Andre Mu, Kristin Mühldorfer, Johanna Lechner, Angelika Lander, Marcel Bokelmann, Emmanuel Couacy‐Hymann, Aleksandar Radonić, Andreas Kurth
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0220268

Species composition of sand flies (Diptera: Psychodidae) in caves of Quadrilátero Ferrífero, state of Minas Gerais, Brazil
Cited by: 10
Author(s): Aldenise Martins Campos, Rodrigo dos Anjos Maia, Débora Capucci, Adriano Pereira Paglia, José Dilermando Andrade Filho
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0150943

Deletion of the Toll-Like Receptor 5 Gene Per Se Does Not Determine the Gut Microbiome Profile That Induces Metabolic Syndrome: Environment Trumps Genotype
Cited by: 19
Author(s): Wei Zhang, Riley Hartmann, Hein Min Tun, Charles O. Elson, Ehsan Khafipour, W. Timothy Garvey
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.4935

High similarity in the microbiota of cold-water sponges of the Genus <i>Mycale</i> from two different geographical areas
Cited by: 28
Author(s): César Cárdenas, Marcelo González-Aravena, Alejandro Font, Jon Thomassen Hestetun, Eduardo Hajdu, Nicole Trefault, Maja Malmberg, Erik Bongcam‐Rudloff
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2021.649694

In planta Activity of Novel Copper(II)-Based Formulations to Inhibit the Esca-Associated Fungus Phaeoacremonium minimum in Grapevine Propagation Material
Cited by: 9
Author(s): Enrico Battiston, Stéphane Compant, Livio Antonielli, Vincenzo Mondello, Christophe Clément, Andrea Simoni, Stefano Di Marco, Laura Mugnai, Florence Fontaine
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.00404

Warming Effects on Periphyton Community and Abundance in Different Seasons Are Influenced by Nutrient State and Plant Type: A Shallow Lake Mesocosm Study
Cited by: 20
Author(s): Beibei Hao, Haoping Wu, Zhen Wei, HyunBin Jo, Yanpeng Cai, Erik Jeppesen, Wei Li
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.7864

Natural stable isotope ratios and fatty acid profiles of estuarine tidal flat nematodes reveal very limited niche overlap among co-occurring species
Cited by: 10
Author(s): Xiulan Wu, Tânia Campinas Bezerra, D. Van Gansbeke, Tom Moens
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.00542-20

Phages versus Antibiotics To Treat Infected Diabetic Wounds in a Mouse Model: a Microbiological and Microbiotic Evaluation
Cited by: 12
Author(s): Jean‐François Huon, Emmanuel Montassier, Anne-Gaëlle Leroy, Matthieu Grégoire, Marie-Anne Vibet, Jocelyne Caillon, David Boutoille, Dominique Navas
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms9081657

Oral Microbiota Identifies Patients in Early Onset Rheumatoid Arthritis
Cited by: 20
Author(s): Anders Esberg, Linda Johansson, Ingegerd Johansson, Solbritt Rantapää-Dahlqvist
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.9523

Distribution of deep-water scleractinian and stylasterid corals across abiotic environmental gradients on three seamounts in the Anegada Passage
Cited by: 8
Author(s): Steven Auscavitch, Jay J. Lunden, Alexandria L. Barkman, Andrea M. Quattrini, Amanda W.J. Demopoulos, Erik E. Cordes
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.6592

Circadian disruption and divergent microbiota acquisition under extended photoperiod regimens in chicken
Cited by: 25
Author(s): Anne-Sophie Charlotte Hieke, Shawna M. Hubert, Giridhar Athrey
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00782-20

Marine Sediments Hold an Untapped Potential for Novel Taxonomic and Bioactive Bacterial Diversity
Cited by: 21
Author(s): Pernille Kjersgaard Bech, Klaus Lars Lysdal, Lone Gram, Mikkel Bentzon-Tilia, Mikael Lenz Strube
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphar.2021.706703

Spontaneous and Naloxone-Precipitated Withdrawal Behaviors From Chronic Opiates are Accompanied by Changes in N-Oleoylglycine and N-Oleoylalanine Levels in the Brain and Ameliorated by Treatment With These Mediators
Cited by: 8
Author(s): Samantha M. Ayoub, Fabiana Piscitelli, Cristoforo Silvestri, Cheryl L. Limebeer, Erin M. Rock, Reem Smoum, Mathew Farag, Hannah de Almeida, Megan T. Sullivan, Sébastien Lacroix, Besma Boubertakh, Nayudu Nallabelli, Aron H. Lichtman, Francesco Leri, Raphael Mechoulam, Vincenzo Di Marzo, Linda A. Parker
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0177030

Long-term fertilization determines different metabolomic profiles and responses in saplings of three rainforest tree species with different adult canopy position
Cited by: 8
Author(s): Albert Gargallo‐Garriga, S. Joseph Wright, Jordi Sardans, Míriam Pérez‐Trujillo, Michal Oravec, Kristýna Večeřová, Otmar Urban, Marcos Fernández‐Martínez, Teodor Parella, Josep Peñuelas
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2019.00069

Compartmentalization of Immune Response and Microbial Translocation in Decompensated Cirrhosis
Cited by: 32
Author(s): Camila Alvarez-Silva, Robert Schierwagen, Alessandra Pohlmann, Fernando Magdaleno, Frank Erhard Uschner, Patrick B. Ryan, Maria J. G. T. Vehreschild, Joan Clària, Eicke Latz, Benjamin Lelouvier, Manimozhiyan Arumugam, Jonel Trebicka
Software Mentions: 2
Published: over 7 years ago

10.3389/fphar.2020.01092

Rhubarb Enema Improved Colon Mucosal Barrier Injury in 5/6 Nephrectomy Rats May Associate With Gut Microbiota Modification
Cited by: 37
Author(s): Chunlan Ji, Yusheng Deng, Yang Ai, Zhaoyu Lu, Yang Chen, Xusheng Liu, Lijuan Han, Chuan Zou
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00626-20

The Behavior of Amphibians Shapes Their Symbiotic Microbiomes
Cited by: 17
Author(s): Liangliang Xu, Mengmeng Xiang, Wei Zhu, Mengjie Zhang, Hua Chen, Jin Huang, Youhua Chen, Qing Chang, Jianping Jiang, Lifeng Zhu
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00901-19

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Cited by: 68
Author(s): Bryn C. Taylor, Franck Lejzerowicz, Marion Poirel, Justin P. Shaffer, Lingjing Jiang, Alexander A. Aksenov, Nicole S. Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller‐Montgomery, Pieter C. Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms8020254

Ethnic Differences Shape the Alpha but Not Beta Diversity of Gut Microbiota from School Children in the Absence of Environmental Differences
Cited by: 16
Author(s): Ke Liu, Yongling Zhang, Qinglin Li, Huan Li, Danfeng Long, Shijuan Yan, Wenjie Huang, Ruijun Long, Xiaodan Huang
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms8010060

Probiotic Supplementation in a Clostridium difficile-Infected Gastrointestinal Model Is Associated with Restoring Metabolic Function of Microbiota
Cited by: 16
Author(s): Mohd Baasir Gaisawat, Chad W. MacPherson, Julien Tremblay, Amanda Piano, Michèle M. Iskandar, Thomas A. Tompkins, Stan Kubow
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2020.01618

High-Throughput Sequencing-Based Analysis of T Cell Repertoire in Lupus Nephritis
Cited by: 12
Author(s): Xiaolan Ye, Zhe Wang, Qiang Ye, Jing Zhang, Ping Huang, Jingying Song, Yiwen Li, Hongjuan Zhang, Feifeng Song, Zixue Xuan, Kejian Wang
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.4508

Half-lives of PAHs and temporal microbiota changes in commonly used urban landscaping materials
Cited by: 50
Author(s): Marja I. Roslund, Mira Grönroos, Anna‐Lea Rantalainen, Ari Jumpponen, Martin Romantschuk, Nan Hui, Heikki Hyöty, Olli H. Laitinen, Aki Sinkkonen
Software Mentions: 2
Published: over 8 years ago

10.1128/mSystems.00055-20

Mucosal Microbiota and Metabolome along the Intestinal Tract Reveal a Location-Specific Relationship
Cited by: 23
Author(s): Ce Yuan, Melanie L. Graham, Christopher Staley, Subbaya Subramanian
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2020.01924

Cyberlindnera jadinii Yeast as a Protein Source for Weaned Piglets—Impact on Immune Response and Gut Microbiota
Cited by: 2
Author(s): Leidy Lagos, Alexander Kashulin Bekkelund, Adrijana Škugor, Ragnhild Ånestad, Caroline Piercey Åkesson, Charles McL. Press, Margareth Øverland
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0242965

Destabilizing effects on a classic tri-trophic oyster-reef cascade
Cited by: 4
Author(s): Virginia R. Schweiss, Chet F. Rakocinski
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00348-19

Timing of Calorie Restriction in Mice Impacts Host Metabolic Phenotype with Correlative Changes in Gut Microbiota
Cited by: 26
Author(s): Liying Zhang, Xinhe Xue, Rui Zhai, Xin Yang, Hui Li, Liping Zhao, Chenhong Zhang
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms7090324

Metagenomic Evaluation of Bacterial and Fungal Assemblages Enriched within Diffusion Chambers and Microbial Traps Containing Uraniferous Soils
Cited by: 16
Author(s): Rajneesh Jaswal, Ashish Pathak, Ashvini Chauhan
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2021.691216

Subgingival Microbiome and Specialized Pro-Resolving Lipid Mediator Pathway Profiles Are Correlated in Periodontal Inflammation
Cited by: 12
Author(s): Chun‐Teh Lee, Ruoxing Li, Lisha Zhu, Gena D. Tribble, W. Jim Zheng, Brittney Ferguson, Krishna Rao Maddipati, Nikola Angelov, Thomas E. Van Dyke
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00374-19

Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental Changes
Cited by: 12
Author(s): Ximei Zhang, Eric R. Johnston, Yaosheng Wang, Qiang Yu, Dashuan Tian, Zhiping Wang, Yanqing Zhang, Daozhi Gong, Chun Luo, Wei Liu, Junjie Yang, Xingguo Han
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2021.712614

Prebiotic Supplementation During Pregnancy Modifies the Gut Microbiota and Increases Metabolites in Amniotic Fluid, Driving a Tolerogenic Environment In Utero
Cited by: 16
Author(s): Carole Brosseau, Amandine Selle, Angéline Duval, Barbara Misme-Aucouturier, Mélanie Chesneau, Sophie Brouard, Claire Cherbuy, Véronique Cariou, Grégory Bouchaud, Kyle T Mincham, Deborah H. Strickland, S. Barbarot, Marie Bodinier
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.572199

Changes in the Microbiome in the Soil of an American Ginseng Continuous Plantation
Cited by: 35
Author(s): Ji‐Guang Zhang, Shaohui Fan, Jun Qin, Jichen Dai, Fang‐Jie Zhao, Liqiang Gao, Xihong Lian, Wenjing Shang, Xiangming Xu, Xiaoping Hu
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2019.01381

Dietary Resistant Potato Starch Alters Intestinal Microbial Communities and Their Metabolites, and Markers of Immune Regulation and Barrier Function in Swine
Cited by: 44
Author(s): Julian Trachsel, C. A. E. Briggs, Nicholas K. Gabler, Heather K. Allen, Crystal L. Loving
Software Mentions: 2
Published: about 7 years ago

10.1128/mSystems.00375-19

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis
Cited by: 23
Author(s): Alexey V. Melnik, Yoshiki Vázquez-Baeza, Alexander A. Aksenov, Embriette R. Hyde, Andrew C. McAvoy, Mingxun Wang, Ricardo R. da Silva, Ivan Protsyuk, Jason V. Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A. Quinn, Richard L. Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S. Brouha, Nuno Bandeira, Grace Lin, Forest Rohwer, Douglas Conrad, Theodore Alexandrov, Rob Knight, Pieter C. Dorrestein, Neha Garg
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-17080-z

Legume crop rotation suppressed nitrifying microbial community in a sugarcane cropping soil
Cited by: 29
Author(s): Chanyarat Paungfoo‐Lonhienne, Weijin Wang, Yun Kit Yeoh, Neil V. Halpin
Software Mentions: 2
Published: almost 9 years ago

10.3389/fimmu.2021.587119

Multi ‘Omics Analysis of Intestinal Tissue in Ankylosing Spondylitis Identifies Alterations in the Tryptophan Metabolism Pathway
Cited by: 25
Author(s): Adam Berlinberg, Emilie Regner, Andrew Stahly, Ana Brar, Julie A. Reisz, Mark E. Gerich, Blair Fennimore, Frank I. Scott, Alison Freeman, Kristine A. Kuhn
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.5502

Conserved microbiota among young <i>Heliconius</i> butterfly species
Cited by: 22
Author(s): Bas van Schooten, Filipa Godoy-Vitorino, W. Owen McMillan, Riccardo Papa
Software Mentions: 2
Published: almost 8 years ago

10.3389/fimmu.2021.636198

Thermoneutrality Alters Gastrointestinal Antigen Passage Patterning and Predisposes to Oral Antigen Sensitization in Mice
Cited by: 6
Author(s): Taeko K. Noah, Jee‐Boong Lee, Christopher Brown, Amnah Yamani, Sunil Tomar, Varsha Ganesan, Rodney D. Newberry, Gary B. Huffnagle, Senad Divanovic, Simon P. Hogan
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00148-19

Multipartner Symbiosis across Biological Domains: Looking at the Eukaryotic Associations from a Microbial Perspective
Cited by: 6
Author(s): Marta Turon, María Jesús Uriz, Daniel Martín
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.10339

Characterization of sediment microbial communities at two sites with low hydrocarbon pollution in the southeast Gulf of Mexico
Cited by: 5
Author(s): Pablo de Jesús Suárez-Moo, Araceli Lamelas, Itzá García-Bautista, Luis Felipe Barahona-Pérez, Gloria Sandoval-Flores, David Valdés-Lozano, Tanit Toledano-Thompson, Erik Polanco-Lugo, Ruby Valdez-Ojeda
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00209-19

A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans
Cited by: 56
Author(s): Alfonso Benı́tez-Páez, Louise Kjølbæk, Eva M. Gómez del Pulgar, Lena K. Brahe, Arne Astrup, Silke Matysik, Hans-Frieder Schött, Sabrina Krautbauer, Gerhard Liebisch, Joanna Boberska, Sandrine P. Claus, Simone Rampelli, Patrizia Brigidi, Lesli H. Larsen, Yolanda Sanz
Software Mentions: 2
Published: about 7 years ago

10.3390/microorganisms9040842

Diversity of Aerobic Anoxygenic Phototrophs and Rhodopsin-Containing Bacteria in the Surface Microlayer, Water Column and Epilithic Biofilms of Lake Baikal
Cited by: 7
Author(s): A. D. Galachyants, Andrey Krasnopeev, G. V. Podlesnaya, Sergey Potapov, E. V. Sukhanova, И. В. Тихонова, E. Zimens, Мarsel R. Kabilov, Н.А. Жученко, Anna Gorshkova, M. Yu. Suslova, О. И. Белых
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00271-18

Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota Profiling
Cited by: 99
Author(s): Zigui Chen, Pak Chun Hui, Michael K. Hui, Yun Kit Yeoh, Pak-Kin Wong, Max Kam-Kwan Chan, Martin Cs Wong, Siew C. Ng, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms8081160

Effects of Thymol Supplementation on Goat Rumen Fermentation and Rumen Microbiota In Vitro
Cited by: 11
Author(s): Jiangkun Yu, Liyuan Cai, Jiacai Zhang, Ao Yang, Yanan Wang, Lei Zhang, Le Luo Guan, Desheng Qi
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2021.680073

Lactobacillus casei CCFM1074 Alleviates Collagen-Induced Arthritis in Rats via Balancing Treg/Th17 and Modulating the Metabolites and Gut Microbiota
Cited by: 30
Author(s): Zhexin Fan, R. Paul Ross, Catherine Stanton, Bao Hou, Jianxin Zhao, Hao Zhang, Bo Yang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0222824

Lipid and fatty acid dynamics by maternal Pacific bluefin tuna
Cited by: 10
Author(s): Yosuke Hiraoka, Yumi Okochi, Seiji Ohshimo, Tamaki Shimose, Hiroshi Ashida, Takuya Sato, Yasuhiro Ando
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2020.584081

Does the Rarity of a Flower’s Scent Phenotype in a Deceptive Orchid Explain Its Pollination Success?
Cited by: 5
Author(s): Herbert Braunschmid, Stefan Dötterl
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00169-18

The Adenoids but Not the Palatine Tonsils Serve as a Reservoir for Bacteria Associated with Secretory Otitis Media in Small Children
Cited by: 19
Author(s): Helena Fagö-Olsen, Laura Marie Dines, Christian Hjort Sørensen, A. S. Jensen
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00261-18

Feed Restriction Modifies Intestinal Microbiota-Host Mucosal Networking in Chickens Divergent in Residual Feed Intake
Cited by: 26
Author(s): Barbara U. Metzler‐Zebeli, Sina-Catherine Siegerstetter, Elizabeth Magowan, Peadar G. Lawlor, Renée M. Petri, Niamh E. O ́Connell, Qendrim Zebeli
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0177083

Atoll-scale patterns in coral reef community structure: Human signatures on Ulithi Atoll, Micronesia
Cited by: 9
Author(s): Nicole L. Crane, Peter A. Nelson, Avigdor Abelson, Kristin Precoda, John Rulmal, Giacomo Bernardi, Michelle J. Paddack
Software Mentions: 2
Published: over 9 years ago

10.3390/microorganisms8030342

Standardization of Plant Microbiome Studies: Which Proportion of the Microbiota is Really Harvested?
Cited by: 15
Author(s): Abdoul Razack Sare, Gilles Stouvenakers, Mathilde Eck, Amber Lampens, Sofie Goormachtig, M. Haïssam Jijakli, Sébastien Massart
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-91387-w

Choice of 16S ribosomal RNA primers affects the microbiome analysis in chicken ceca
Cited by: 20
Author(s): Nadia Darwish, Jonathan Shao, Lori L. Schreier, Monika Proszkowiec‐Weglarz
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-90204-8

Nitrogen fixation and denitrification activity differ between coral- and algae-dominated Red Sea reefs
Cited by: 10
Author(s): Yusuf C. El-Khaled, Florian Roth, Nils Rädecker, Arjen Tilstra, Denis B. Karcher, Benjamin Kürten, Burton H. Jones, Christian R. Voolstra, Christian Wild
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.705001

Biogeographical Regionalization of Wine Yeast Communities in Greece and Environmental Drivers of Species Distribution at a Local Scale
Cited by: 14
Author(s): Ioanna Chalvantzi, Georgios Banilas, Chrysoula C. Tassou, Aspasia Nisiotou
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-15375-9

Evaluating the impact of domestication and captivity on the horse gut microbiome
Cited by: 87
Author(s): Jessica L. Metcalf, Se Jin Song, James T. Morton, Sophie Weiss, Andaine Seguin-Orlando, Frédéric Joly, Claudia Feh, Pierre Taberlet, Éric Coissac, Amir Almasi‐Hashiani, Eske Willerslev, Rob Knight, Valerie J. McKenzie, Ludovic Orlando
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.01607

Vineyard Soil Microbiome Composition Related to Rotundone Concentration in Australian Cool Climate ‘Peppery’ Shiraz Grapes
Cited by: 23
Author(s): Vadakattu V. S. R. Gupta, R. G. V. Bramley, Paul Greenfield, Julian Yu, Markus Herderich
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2021.631445

Assessing the Diversity and Biomedical Potential of Microbes Associated With the Neptune’s Cup Sponge, Cliona patera
Cited by: 2
Author(s): Xin Yi Ho, Nursheena Parveen Katermeran, Lindsey K. Deignan, Ma Yadanar Phyo, Ji Fa Marshall Ong, Jun Xian Goh, Juat Ying Ng, Karenne Tun, Lik Tong Tan
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.01024

Characterization of Bacterial and Fungal Assemblages From Historically Contaminated Metalliferous Soils Using Metagenomics Coupled With Diffusion Chambers and Microbial Traps
Cited by: 14
Author(s): Ashish Pathak, Rajneesh Jaswal, Xiaoyu Xu, John R. White, Bobby Edwards, Jaden Hunt, Scott C. Brooks, Rajesh Rathore, Meenakshi Agarwal, Ashvini Chauhan
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-90888-y

Bacteroides uniformis CECT 7771 alleviates inflammation within the gut-adipose tissue axis involving TLR5 signaling in obese mice
Cited by: 27
Author(s): Emanuel Fabersani, Kevin J. Portune, Isabel Campillo, Inmaculada López-Almela, Sergio Montserrat‐de la Paz, Marina Romaní-Pérez, Alfonso Benı́tez-Páez, Yolanda Sanz
Software Mentions: 2
Published: about 5 years ago

10.3389/fphys.2018.01968

Intestinal Morphologic and Microbiota Responses to Dietary Bacillus spp. in a Broiler Chicken Model
Cited by: 71
Author(s): Chengliang Li, Jing Wang, Haijun Zhang, Shu‐geng Wu, Qianru Hui, Chengbo Yang, Rejun Fang, Guang‐hai Qi
Software Mentions: 2
Published: over 7 years ago

10.1098/rstb.2019.0578

Investigating the demographic history of Japan using ancient oral microbiota
Cited by: 16
Author(s): Raphael Eisenhofer, Hideaki Kanzawa-Kiriyama, Ken-ichi Shinoda, Laura S. Weyrich
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.621126

Livestock Manure Type Affects Microbial Community Composition and Assembly During Composting
Cited by: 43
Author(s): Jinxin Wan, Xiaofang Wang, Tianjie Yang, Samiran Banerjee, Ville‐Petri Friman, Xinlan Mei, Yangchun Xu, Qirong Shen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-89903-z

Integrating multiple chemical tracers to elucidate the diet and habitat of Cookiecutter Sharks
Cited by: 7
Author(s): Aaron B. Carlisle, Elizabeth Andruszkiewicz Allan, Sora L. Kim, Lauren Meyer, Jesse A. Port, Stephen R. Scherrer, John B. O’Sullivan
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.571363

Species-Specific Trait Responses of Three Tropical Seagrasses to Multiple Stressors: The Case of Increasing Temperature and Nutrient Enrichment
Cited by: 20
Author(s): Inés G. Viana, Agustín Moreira‐Saporiti, Mirta Teichberg
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphys.2019.00179

Combined Effects of Three High-Energy Charged Particle Beams Important for Space Flight on Brain, Behavioral and Cognitive Endpoints in B6D2F1 Female and Male Mice
Cited by: 50
Author(s): Jacob Raber, Joy Yamazaki, Eileen Ruth S. Torres, Nicole Kirchoff, Keaton Stagaman, Thomas J. Sharpton, Mitchell S. Turker, Amy Kronenberg
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-91182-7

Soil degradation influences soil bacterial and fungal community diversity in overgrazed alpine meadows of the Qinghai-Tibet Plateau
Cited by: 20
Author(s): Lin Dong, Jingjing Li, Juan Sun, Chao Yang
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms9051084

Experimental Infection of the Biomphalaria glabrata Vector Snail by Schistosoma mansoni Parasites Drives Snail Microbiota Dysbiosis
Cited by: 15
Author(s): Anaïs Portet, Ève Toulza, Ana Lokmer, Camille Huot, David Timothy Duval, Richard Galinier, Benjamin Gourbal
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-14527-1

Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea
Cited by: 29
Author(s): Anna Synnøve Røstad Nordgård, Wenche Hennie Bergland, Ôlav Vadstein, В. А. Миронов, Rune Bakke, Kjetill Østgaard, Ingrid Bakke
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-15291-y

Juvenile fish assemblages in temperate rocky reefs are shaped by the presence of macro-algae canopy and its three-dimensional structure
Cited by: 25
Author(s): Adrien Cheminée, Jérémy Pastor, Olivier Bianchimani, Pierre Thiriet, Enric Sala, Jean-Michel Cottalorda, Jean-Marie Dominici, Pierre Lejeune, Patrice Francour
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-13249-8

Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)
Cited by: 98
Author(s): Carola E. Dehler, Christopher J. Secombes, Samuel Martín
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-021-90553-4

Identification of mucin degraders of the human gut microbiota
Cited by: 48
Author(s): Stefano Raimondi, Eliana Musmeci, Francesco Candeliere, Alberto Amaretti, Maddalena Rossi
Software Mentions: 2
Published: over 5 years ago

10.14814/phy2.13932

Gut microbial features can predict host phenotype response to protein deficiency
Cited by: 16
Author(s): Guadalupe Navarro, Anukriti Sharma, Lara R. Dugas, Terrence Forrester, Jack A. Gilbert, Brian T. Layden
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2019.01518

Plant-Climate Interaction Effects: Changes in the Relative Distribution and Concentration of the Volatile Tea Leaf Metabolome in 2014–2016
Cited by: 21
Author(s): Nicole Kfoury, Eric R. Scott, Colin M. Orians, Selena Ahmed, Sean B. Cash, Timothy S. Griffin, Corene J. Matyas, John Richard Stepp, Han Wang, Dayuan Xue, Chunlin Li, Albert Robbat
Software Mentions: 2
Published: almost 7 years ago

10.14814/phy2.13170

Potential mechanisms of effects of serum-derived bovine immunoglobulin/protein isolate therapy in patients with diarrhea-predominant irritable bowel syndrome
Cited by: 20
Author(s): Nelson Valentin, Michael Camilleri, Paula Carlson, Sean C. Harrington, Deborah J. Eckert, Jessica O’Neill, Duane D. Burton, Jun Chen, Audrey L. Shaw, Andrés Acosta
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-021-90024-w

The gut microbiome in pancreatogenic diabetes differs from that of Type 1 and Type 2 diabetes
Cited by: 8
Author(s): Rupjyoti Talukdar, Priyanka Sarkar, Aparna Jakkampudi, Subhaleena Sarkar, Mohsin Aslam, Manasa Jandhyala, G. Deepika, Misbah Unnisa, D. Nageshwar Reddy
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-14075-8

Nutrient Loading Fosters Seagrass Productivity Under Ocean Acidification
Cited by: 27
Author(s): Chiara Ravaglioli, Chiara Lauritano, María Cristina Buia, Elena Balestri, Antonella Capocchi, Debora Fontanini, G. Pardi, Laura Tamburello, Gabriele Procaccini, Fabio Bulleri
Software Mentions: 2
Published: almost 9 years ago

10.3390/microorganisms7070202

Effects of Chestnut Tannin Extract, Vescalagin and Gallic Acid on the Dimethyl Acetals Profile and Microbial Community Composition in Rumen Liquor: An In Vitro Study
Cited by: 17
Author(s): Federica Mannelli, Matteo Daghio, Susana P. Alves, Rui J. B. Bessa, Sara Minieri, Luciana Giovannetti, Giuseppe Conte, Marcello Mele, Anna Messini, Stefano Rapaccini, Carlo Viti, Arianna Buccioni
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.571009

Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning
Cited by: 8
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta
Software Mentions: 2
Published: almost 6 years ago

10.14814/phy2.13639

Acute intraperitoneal lipopolysaccharide influences the immune system in the absence of gut dysbiosis
Cited by: 9
Author(s): Kristyn E. Sylvia, Gregory E. Demas
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-12163-3

Short chain fatty acids ameliorate immune-mediated uveitis partially by altering migration of lymphocytes from the intestine
Cited by: 102
Author(s): Yukiko Nakamura, Cathleen Janowitz, Christina Metea, Mark Asquith, Lisa Karstens, James T. Rosenbaum, Phoebe Lin
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2018.02479

Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test
Cited by: 54
Author(s): Yunshi Li, Xiukun Wu, Tuo Chen, Wanfu Wang, Guangxiu Lu, Wei Zhang, Shi-Weng Li, Minghao Wang, Changming Zhao, Huaizhe Zhou, Gaosen Zhang
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0185187

Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores
Cited by: 16
Author(s): Laurent Barillé, Anthony Le Bris, Vona Méléder, Patrick Launeau, Marc Robin, Ioanna Louvrou, Lourenço Ribeiro
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2021.623739

Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers
Cited by: 29
Author(s): Liugang Kan, Fangshen Guo, Yan Liu, Van Hieu Pham, Yuming Guo, Weihong Zhong
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-89822-z

Longitudinal profiling of the burn patient cutaneous and gastrointestinal microbiota: a pilot study
Cited by: 6
Author(s): Kelly M. Lima, Ryan R. Davis, Stephenie Y. Liu, David G. Greenhalgh, Nam K. Tran
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0131944

Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine
Cited by: 42
Author(s): Daniel N. Frank, Elise S. Bales, Jenifer Monks, Matthew J. Jackman, Paul S. MacLean, Diana Ir, Charles E. Robertson, David J. Orlicky, James L. McManaman
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0165035

Nestedness in Arbuscular Mycorrhizal Fungal Communities along Soil pH Gradients in Early Primary Succession: Acid-Tolerant Fungi Are pH Generalists
Cited by: 20
Author(s): Ai Kawahara, Gi-Hong An, Sachie Miyakawa, Jun Sonoda, Tatsuhiro Ezawa
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2017.00792

Differing Complex Microbiota Alter Disease Severity of the IL-10−/− Mouse Model of Inflammatory Bowel Disease
Cited by: 39
Author(s): Marcia L. Hart, Aaron C. Ericsson, Craig L. Franklin
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2020.578812

nifH Gene Sequencing Reveals the Effects of Successive Monoculture on the Soil Diazotrophic Microbial Community in Casuarina equisetifolia Plantations
Cited by: 5
Author(s): Liuting Zhou, Jianjuan Li, Ganga Raj Pokhrel, Jun Chen, Yanlin Zhao, Ying Bai, Chen Zhang, Wenxiong Lin, Zeyan Wu, Chengzhen Wu
Software Mentions: 2
Published: over 5 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292