cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1093/femsec/fiaa163

Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure
Cited by: 19
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Ôlav Vadstein, Madeleine S. Gundersen, Ingrid Bakke
Software Mentions: 3
Published: about 6 years ago

10.1098/rsos.190958

Low connectivity between shallow, mesophotic and rariphotic zone benthos
Cited by: 18
Author(s): Paris V. Stefanoudis, Molly Rivers, Struan R. Smith, Craig W. Schneider, Daniel Wagner, Helen Ford, Alex D. Rogers, Lucy C. Woodall
Software Mentions: 3
Published: almost 7 years ago

10.1111/1462-2920.14043

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments
Cited by: 197
Author(s): Stephanie A. Eichorst, Daniela Trojan, Simon Roux, Craig W. Herbold, Thomas Rattei, Dagmar Woebken
Software Mentions: 3
Published: over 8 years ago

10.1111/1462-2920.14882

Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen
Cited by: 33
Author(s): S. Emilia Hannula, Hui Ma, Juan E. Pérez‐Jaramillo, Ana Pineda, T. Martijn Bezemer
Software Mentions: 3
Published: over 6 years ago

10.1007/s00267-017-0889-1

Macroinvertebrate Taxonomic and Functional Trait Compositions within Lotic Habitats Affected By River Restoration Practices
Cited by: 30
Author(s): James C. White, Matthew J. Hill, Melanie A. Bickerton, Paul J. Wood
Software Mentions: 3
Published: over 9 years ago

10.3390/jcm8050693

Gut Microbial Composition and Function Are Altered in Patients with Early Rheumatoid Arthritis
Cited by: 57
Author(s): Yunju Jeong, Ji-Won Kim, Hyun Ju You, Sangjun Park, Jennifer Lee, Ji Hyeon Ju, Myeong Soo Park, Hui Jin, Mi‐La Cho, Bin Kwon, Sung-Hwan Park, Geun Eog Ji
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-60058-7

Short-term flooding increases CH4 and N2O emissions from trees in a riparian forest soil-stem continuum
Cited by: 33
Author(s): Thomas Schindler, Ülo Mander, Kateřina Macháčová, Mikk Espenberg, Dmitrii Krasnov, Jordi Escuer-Gatius, Gert Veber, Jaan Pärn, Kaido Soosaar
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.00975

Long-Term Temperature Stress in the Coral Model Aiptasia Supports the “Anna Karenina Principle” for Bacterial Microbiomes
Cited by: 37
Author(s): Hanin Ibrahim Ahmed, Marcela Herrera, Yi Jin Liew, Manuel Aranda
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-55625-6

Succession of microbial populations and nitrogen-fixation associated with the biodegradation of sediment-oil-agglomerates buried in a Florida sandy beach
Cited by: 22
Author(s): Boryoung Shin, Ioana Bociu, Max Kolton, Markus Huettel, Joel E. Kostka
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2019.00932

Facilitation of Balsam Fir by Trembling Aspen in the Boreal Forest: Do Ectomycorrhizal Communities Matter?
Cited by: 8
Author(s): Mélissande Nagati, Mélanie Roy, Annie DesRochers, Sophie Manzi, Yves Bergeron, Monique Gardes
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2019.02655

Soil Property and Plant Diversity Determine Bacterial Turnover and Network Interactions in a Typical Arid Inland River Basin, Northwest China
Cited by: 12
Author(s): Wenjuan Wang, Jianming Wang, Ziqi Ye, Tianhan Zhang, Laiye Qu, Jingwen Li
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2013.00253

Plant soil interactions alter carbon cycling in an upland grassland soil
Cited by: 22
Author(s): Bruce C. Thomson, Nicholas J. Ostle, Niall P. McNamara, Simon Oakley, Andrew S. Whiteley, Mark Bailey, Robert I. Griffiths
Software Mentions: 3
Published: over 13 years ago

10.1186/s12967-019-1775-9

A novel signature derived from immunoregulatory and hypoxia genes predicts prognosis in liver and five other cancers
Cited by: 42
Author(s): Wai Hoong Chang, Dónall Forde, Alvina G. Lai
Software Mentions: 3
Published: over 7 years ago

10.1186/s12931-018-0835-7

Decreased microbiome diversity in the HIV small airway epithelium
Cited by: 16
Author(s): Stella Xu, Amy S. Tsai, Marc A. Sze, Emily A. Vucic, Tawimas Shaipanich, Marianne Harris, Silvia Guillemi, Julia Yang, Sunita Sinha, Corey Nislow, Julio S. G. Montaner, Wan L. Lam, Stephen Lam, Don D. Sin, S. F. Paul Man, Janice M. Leung
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2020.586387

Microbiome Profiling Reveals a Microbial Dysbiosis During a Natural Outbreak of Tenacibaculosis (Yellow Mouth) in Atlantic Salmon
Cited by: 25
Author(s): James W. Wynne, Krishna K. Thakur, Joel Slinger, Francisca Samsing, Barry Milligan, James F. F. Powell, Allison McKinnon, Omid Nekouei, Danielle New, Zina Richmond, Ian A. Gardner, Ahmed Siah
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2017.01301

Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth
Cited by: 63
Author(s): Ziting Wang, Tong Li, Xiaoxia Wen, Yang Liu, Jie Han, Yuncheng Liao, Jennifer M. DeBruyn
Software Mentions: 3
Published: about 9 years ago

10.1186/s12931-019-1080-4

Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study
Cited by: 29
Author(s): Alexa A. Pragman, Katherine A. Knutson, Trevor Gould, Richard E. Isaacson, Cavan Reilly, Christine Wendt
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2021.648455

Resistance, Resilience, and Recovery of Dryland Soil Bacterial Communities Across Multiple Disturbances
Cited by: 12
Author(s): Blaire Steven, Michala L. Phillips, Jayne Belnap, La Verne Gallegos‐Graves, Cheryl R. Kuske, Sasha C. Reed
Software Mentions: 3
Published: over 5 years ago

10.3390/jcm9061748

Differentially Abundant Bacterial Taxa Associated with Prognostic Variables of Crohn’s Disease: Results from the IMPACT Study
Cited by: 7
Author(s): Soo-Kyung Park, Hanna Kim, Chang Hwan Choi, Jong Pil Im, Jae Myung, Chang Soo Eun, Tae-Oh Kim, Sang Bum Kang, Ki Bae Bang, Hyun Gun Kim, Yunho Jung, Hyuk Yoon, Dongsoo Han, Chil-Woo Lee, Kwang‐Soon Ahn, Hyung-Lae Kim, Dong Il Park
Software Mentions: 3
Published: about 6 years ago

10.1186/s12931-020-01367-3

Differences in airway microbiome and metabolome of single lung transplant recipients
Cited by: 17
Author(s): Nirmal Sharma, Grant Vestal, Keith Wille, Kapil Patel, Feng Cheng, Srinivas M. Tipparaju, Sultan Tousif, Mudassir M Banday, Xin Xu, Landon Wilson, Viswam S. Nair, Casey D. Morrow, Don Hayes, Andreas Seyfang, Stephen Barnes, Jessy Deshane, Amit Gaggar
Software Mentions: 3
Published: over 6 years ago

10.1093/femsec/fiab022

Soil depth matters: shift in composition and inter-kingdom co-occurrence patterns of microorganisms in forest soils
Cited by: 39
Author(s): Sunil Mundra, O. Janne Kjønaas, Luis Morgado, Anders K. Krabberød, Yngvild Ransedokken, Håvard Kauserud
Software Mentions: 3
Published: over 5 years ago

10.1186/s40793-019-0347-1

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
Cited by: 58
Author(s): Hyun S. Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, René Niehus, Alasdair T. M. Hubbard, Michael J. Bowes, Mark Bailey, Tim Peto, Sarah Hoosdally, A Sarah Walker, Robert Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser
Software Mentions: 3
Published: almost 7 years ago

10.3389/fphys.2021.645212

Exploration of Crucial Mediators for Carotid Atherosclerosis Pathogenesis Through Integration of Microbiome, Metabolome, and Transcriptome
Cited by: 9
Author(s): Lei Ji, Siliang Chen, Guangchao Gu, Jiawei Zhou, Wei Wang, Jinrui Ren, Jianhuang Wu, Dan Yang, Yuehong Zheng
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.01865

Ruminal Fermentation Pattern, Bacterial Community Composition, and Nutrient Digestibility of Nellore Cattle Submitted to Either Nutritional Restriction or Intake of Concentrate Feedstuffs Prior to Adaptation Period
Cited by: 6
Author(s): A. C. J. Pinto, Gustavo Perina Bertoldi, Luana D. Felizari, Evandro Dias, Breno L. Demartini, Ana Paula Nunes, M. M. Squizatti, Antonio M. Silvestre, Leandro Barbosa de Oliveira, Joseph H. Skarlupka, Paulo Henrique Mazza Rodrigues, G. D. Cruz, Garret Suen, D. D. Millen
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-97586-9

Dynamics of the fecal microbiome and antimicrobial resistome in commercial piglets during the weaning period
Cited by: 3
Author(s): Prapat Suriyaphol, Jimmy Ka Ho Chiu, Nathamon Yimpring, Paiboon Tunsagool, Wuttichai Mhuantong, Rungtip Chuanchuen, Irina Bessarab, Rohan B.H. Williams, Rick Twee‐Hee Ong, Gunnaporn Suriyaphol
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-59436-y

Defining variation in pre-human ecosystems can guide conservation: An example from a Caribbean coral reef
Cited by: 15
Author(s): Aaron O’Dea, Mauro Lepore, Andrew H. Altieri, Melisa Chan, Jorge Manuel Morales‐Saldaña, Nicte-Ha Muñoz, John M. Pandolfi, Marguerite A. Toscano, Jian‐xin Zhao, Erin M. Dillon
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2016.00345

Above–Belowground Herbivore Interactions in Mixed Plant Communities Are Influenced by Altered Precipitation Patterns
Cited by: 29
Author(s): James M. W. Ryalls, Ben D. Moore, Markus Riegler, Scott N. Johnson
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2021.640469

Mycoplankton Biome Structure and Assemblage Processes Differ Along a Transect From the Elbe River Down to the River Plume and the Adjacent Marine Waters
Cited by: 7
Author(s): Yanyan Yang, Stefanos Banos, Gunnar Gerdts, Antje Wichels, M. Reich
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2018.00272

Strongyle Infection and Gut Microbiota: Profiling of Resistant and Susceptible Horses Over a Grazing Season
Cited by: 45
Author(s): Allison Clark, Guillaume Sallé, Valentine Ballan, Fabrice Reigner, Annabelle Troegeler‐Meynadier, Jacques Cortet, Christine Koch, Mickaël Riou, Alexandra Blanchard, Núria Mach
Software Mentions: 3
Published: over 8 years ago

10.1126/sciadv.aba2578

Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children
Cited by: 150
Author(s): Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Noora Nurminen, Sami Oikarinen, Ahmad Mahfuz Gazali, Ondřej Cinek, Lenka Kramná, Nathan Siter, Heli K. Vari, Laura Soininen, Nan Hui, Juho Rajaniemi, Tuure Kinnunen, Olli H. Laitinen, Heikki Hyöty, Aki Sinkkonen
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2021.715991

Brazilian Semi-Arid Mangroves-Associated Microbiome as Pools of Richness and Complexity in a Changing World
Cited by: 6
Author(s): Tallita Cruz Lopes Tavares, Walderly Melgaço Bezerra, Leonardo Ribeiro Oliveira Normando, Alexandre Soares Rosado, Vânia Maria Maciel Melo
Software Mentions: 3
Published: about 5 years ago

10.3390/jcm10051097

Urinary Microbiome Characteristics in Female Patients with Acute Uncomplicated Cystitis and Recurrent Cystitis
Cited by: 18
Author(s): Jeong‐Ju Yoo, Hee Bong Shin, Ju Sun Song, Minjung Kim, Jina Yun, Zisun Kim, Yoo Min Lee, Sang Wook Lee, Kwang Woo Lee, Woong Bin Kim, Chang Beom Ryu, Sung Woo Park, Seong Kyu Park, Ho‐Yeon Song, Young Ho Kim
Software Mentions: 3
Published: over 5 years ago

10.1093/femsec/fix117

Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control
Cited by: 25
Author(s): Johanna Mayerhofer, Sonja Eckard, Martin Hartmann, Giselher Grabenweger, Franco Widmer, Adrian Leuchtmann, Jürg Enkerli
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-020-59182-1

Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions
Cited by: 51
Author(s): Máté Vass, Anna J. Székely, Eva S. Lindström, Silke Langenheder
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.564579

Differential Gut Microbiota and Fecal Metabolites Related With the Clinical Subtypes of Myasthenia Gravis
Cited by: 17
Author(s): Xunmin Tan, Yu Huang, Tingjia Chai, Xiaoli Zhao, Yifan Li, Jing Wu, Hanping Zhang, Jiajia Duan, Weiwei Liang, Bangmin Yin, Ke Cheng, Gang Yu, Peng Zheng, Peng Xie
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-56977-9

Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection
Cited by: 56
Author(s): Antonio José Fernández-González, Pablo J. Villadas, Carmen Gómez-Lama Cabanás, Antonio Valverde-Corredor, Angjelina Belaj, Jesús Mercado‐Blanco, Manuel Fernández‐López
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-59276-w

Scanning electron microscopy and machine learning reveal heterogeneity in capsular morphotypes of the human pathogen Cryptococcus spp.
Cited by: 3
Author(s): William Lopes, Giuliano Netto Flores Cruz, Márcio L. Rodrigues, Mendeli H. Vainstein, Lívia Kmetzsch, Charley Christian Staats, Marilene Henning Vainstein, Augusto Schrank
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-57734-z

Diversity, compositional and functional differences between gut microbiota of children and adults
Cited by: 81
Author(s): Djawad Radjabzadeh, Cindy G. Boer, Sanne A. Beth, Pelle van der Wal, Jessica C. Kiefte–de Jong, Michelle A. E. Jansen, Sergey R. Konstantinov, Maikel P. Peppelenbosch, John P. Hays, Vincent W V Jaddoe, M. Arfan Ikram, Fernando Rivadeneira, Joyce B. J. van Meurs, André G. Uitterlinden, Carolina Medina‐Gomez, Henriëtte A. Moll, Robert Kraaij
Software Mentions: 3
Published: over 6 years ago

10.1111/1462-2920.15232

Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment
Cited by: 14
Author(s): Maria Pinto, Paula Polania Zenner, Teresa M. Langer, Jesse Patrick Harrison, Meinhard Simon, Marta M. Varela, Gerhard J. Herndl
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-49452-y

Defining Dysbiosis for a Cluster of Chronic Diseases
Cited by: 182
Author(s): Lamont Wilkins, Manoj Monga, Aaron W. Miller
Software Mentions: 3
Published: almost 7 years ago

10.3390/nu13093171

A Randomised, Controlled Trial: Effect of a Multi-Strain Fermented Milk on the Gut Microbiota Recovery after Helicobacter pylori Therapy
Cited by: 17
Author(s): Eric Guillemard, Marion Poirel, Florent Schäfer, Laurent Quinquis, Caroline Rossoni, Christian Keicher, Frank Wagner, Hania Szajewska, Fréderic Barbut, Muriel Derrien, Peter Malfertheiner
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2021.625488

Pre-weaning Ruminal Administration of Differentially-Enriched, Rumen-Derived Inocula Shaped Rumen Bacterial Communities and Co-occurrence Networks of Post-weaned Dairy Calves
Cited by: 7
Author(s): Tansol Park, Laura M. Cersosimo, Wenli Li, Wendy Radloff, G.I. Zanton
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-49464-8

Impact of cleaning and disinfection procedures on microbial ecology and Salmonella antimicrobial resistance in a pig slaughterhouse
Cited by: 20
Author(s): Arnaud Bridier, Patricia Le Grandois, Marie-Hélène Moreau, Charleyne Prénom, Alain Roux, Carole Feurer, Christophe Soumet
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-49553-8

European spiny lobster recovery from overfishing enhanced through active restocking in Fully Protected Areas
Cited by: 10
Author(s): Alessandro Cau, Andrea Bellodi, Rita Cannas, Maurizio Fois, Paolo Guidetti, Davide Moccia, Antonio Pusceddu, María Cristina Follesa
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2018.02361

Bacterial Associates of a Gregarious Riparian Beetle With Explosive Defensive Chemistry
Cited by: 18
Author(s): Reilly McManus, Alison Ravenscraft, Wendy Moore
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2017.01834

Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest
Cited by: 50
Author(s): K. G. M. Cabugao, Collin M. Timm, Alyssa A. Carrell, Joanne Childs, Tse-Yuan S. Lu, Dale A. Pelletier, David J. Weston, R. J. Norby
Software Mentions: 3
Published: almost 9 years ago

10.1111/1365-2745.13299

Rhizosphere and litter feedbacks to range‐expanding plant species and related natives
Cited by: 13
Author(s): Marta Manrubia, Wim H. van der Putten, Carolin Weser, G. F. Veen
Software Mentions: 3
Published: almost 7 years ago

10.1111/1365-2745.13409

Community‐level interactions between plants and soil biota during range expansion
Cited by: 13
Author(s): Kadri Koorem, L. Basten Snoek, J. Bloem, Stefan Geisen, Olga Kostenko, Marta Manrubia, Kelly S. Ramirez, Carolin Weser, Rutger A. Wilschut, W.H. van der Putten
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-019-55703-9

Significant effect of HIV/HAART on oral microbiota using multivariate analysis
Cited by: 20
Author(s): Ann L. Griffen, Zachary A. Thompson, Clifford J. Beall, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Shahr B. Hashmi, Chiranjit Mukherjee, Aubrey Gilliland, José Antonio Vázquez, Michael E. Hagensee, Eugene J. Leys, Paul L. Fidel
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-97007-x

Delivery mode and perinatal antibiotics influence the predicted metabolic pathways of the gut microbiome
Cited by: 7
Author(s): Petri Vänni, Mysore V. Tejesvi, Sofia Ainonen, Marjo Renko, Katja Korpela, Jarmo A. Salo, Niko Paalanne, Terhi Tapiainen
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2018.01230

Root JA Induction Modifies Glucosinolate Profiles and Increases Subsequent Aboveground Resistance to Herbivore Attack in Cardamine hirsuta
Cited by: 13
Author(s): Moe Bakhtiari, Gaétan Glauser, Sergio Rasmann
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2017.01381

Petroleum Contamination and Plant Identity Influence Soil and Root Microbial Communities While AMF Spores Retrieved from the Same Plants Possess Markedly Different Communities
Cited by: 25
Author(s): Bachir Iffis, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2016.01053

Leaf Treatments with a Protein-Based Resistance Inducer Partially Modify Phyllosphere Microbial Communities of Grapevine
Cited by: 19
Author(s): Martina Cappelletti, Michele Perazzolli, Livio Antonielli, Andrea Nesler, E. Torboli, P. Bianchedi, Massimo Pindo, Gerardo Puopolo, I. Pertot
Software Mentions: 3
Published: about 10 years ago

10.1038/s41598-019-49897-1

Comparative analysis of the fecal microbiota from different species of domesticated and wild suids
Cited by: 21
Author(s): Florencia Correa‐Fiz, Miguel Blanco-Fuertes, María Jesús Navas, Anna Lacasta, Richard P. Bishop, Naftaly Githaka, Cynthia Onzere, Marie‐Frédérique Le Potier, Vanessa Almagro-Delgado, Jorge Martínez, Virginia Aragón, Fernando Rodrı́guez
Software Mentions: 3
Published: almost 7 years ago

10.3390/nu13062029

Gut Microbiota Prevents Sugar Alcohol-Induced Diarrhea
Cited by: 7
Author(s): Katsuji Hattori, Masahiro Akiyama, Natsumi Seki, Kyosuke Yakabe, Koji Hase, Yun Gi Kim
Software Mentions: 3
Published: about 5 years ago

10.1128/mBio.01604-18

Impact of Individual Traits, Saturated Fat, and Protein Source on the Gut Microbiome
Cited by: 67
Author(s): Jennifer M. Lang, Calvin Pan, Rita M. Cantor, W.H. Wilson Tang, Jose Carlos García-García, Ira Kurtz, Stanley L. Hazen, Nathalie Bergeron, Ronald M. Krauss, Aldons J. Lusis
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.3121

Disentangling the genetic and morphological structure of Patella candei complex in Macaronesia (NE Atlantic)
Cited by: 10
Author(s): João Faria, Gustavo M. Martins, Alfonso Pita, Pedro A. Ribeiro, Stephen J. Hawkins, Pablo Presa, Ana I. Neto
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2016.00440

Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific
Cited by: 113
Author(s): Catarina Cúcio, Aschwin H. Engelen, Rodrigo Costa, Gerard Muyzer
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2019.02951

The Composition and Phosphorus Cycling Potential of Bacterial Communities Associated With Hyphae of Penicillium in Soil Are Strongly Affected by Soil Origin
Cited by: 14
Author(s): Xiuli Hao, Yan Zhu, Ole Nybroe, Mette Haubjerg Nicolaisen
Software Mentions: 3
Published: over 6 years ago

10.1128/mBio.00062-19

Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection
Cited by: 32
Author(s): Eve G D Hopkins, Theodoros I. Roumeliotis, Caroline Mullineaux-Sanders, Jyoti S. Choudhary, Gad Frankel
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2020.00383

Featured Gut Microbiomes Associated With the Progression of Chronic Hepatitis B Disease
Cited by: 48
Author(s): Zhangran Chen, Yurou Xie, Fei Zhou, Bangzhou Zhang, Jingtong Wu, Luxi Yang, Shuaimei Xu, Robert D. Stedtfeld, Qiongyun Chen, Jingjing Liu, Xiang Zhang, Hui Xu, Jianlin Ren
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-50730-y

A microcosm approach highlights the response of soil mineral weathering bacterial communities to an increase of K and Mg availability
Cited by: 22
Author(s): Océane Nicolitch, Maureen Feucherolles, Jean-Louis Churin, Laure Fauchery, M.-P. Turpault, Stéphane Uroz
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2016.00161

Effects of Temperature Stress and Aquarium Conditions on the Red Macroalga Delisea pulchra and its Associated Microbial Community
Cited by: 16
Author(s): Enrique Zozaya‐Valdés, Alexandra J. Roth‐Schulze, Torsten Thomas
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2021.668238

High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics
Cited by: 14
Author(s): Nicholas J. Reichart, Robert M. Bowers, Tanja Woyke, Roland Hatzenpichler
Software Mentions: 3
Published: over 5 years ago

10.1093/jxb/eru439

Amino acid-mediated impacts of elevated carbon dioxide and simulated root herbivory on aphids are neutralized by increased air temperatures
Cited by: 28
Author(s): James M. W. Ryalls, Ben D. Moore, Markus Riegler, Andrew N. Gherlenda, Scott N. Johnson
Software Mentions: 3
Published: almost 12 years ago

10.3389/fpls.2021.715377

Homo- and Dikaryons of the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis Differ in Life History Strategy
Cited by: 14
Author(s): Edward Umberto Serghi, Vasilis Kokkoris, Calvin Cornell, Jeremy R. Dettman, Franck Stefani, Nicolas Corradi
Software Mentions: 3
Published: about 5 years ago

10.1128/mBio.02171-19

Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression
Cited by: 21
Author(s): Tonya Ward, Bonnie Weber, Kristelle M. Mendoza, Jessica L. Danzeisen, Katharine Llop, Kevin S. Lang, Jonathan B. Clayton, Elicia D. Grace, J. A. Brannon, Igor Radović, Mai Beauclaire, Timothy Heisel, Dan Knights, Carol J. Cardona, Michael H. Kogut, Casey Johnson, Sally Noll, Ryan J. Arsenault, Kent M. Reed, Timothy J. Johnson
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2021.637834

Surface Topography, Bacterial Carrying Capacity, and the Prospect of Microbiome Manipulation in the Sea Anemone Coral Model Aiptasia
Cited by: 18
Author(s): R. M. Costa, Anny Cárdenas, Céline Loussert, Gaëlle Toullec, A. Meibom, Christian R. Voolstra
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.01622

Host-Specific Functional Significance of Caenorhabditis Gut Commensals
Cited by: 59
Author(s): Maureen Berg, Xiao Ying Zhou, Michael Y. Shapira
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.ppat.1007672

Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection
Cited by: 34
Author(s): Tiffany Hensley-McBain, Michael C. Wu, Jennifer A. Manuzak, Ryan Cheu, Andrew T. Gustin, Connor B. Driscoll, Alexander S. Zevin, Charlene Miller, Ernesto Coronado, Eric E. Smith, Jean Chang, Michael Gale, Ma Somsouk, Adam Burgener, Peter W. Hunt, Thomas J. Hope, Ann C. Collier, Nichole R. Klatt
Software Mentions: 3
Published: over 7 years ago

10.3389/fnut.2021.675640

Methyl-Donor Micronutrient for Gestating Sows: Effects on Gut Microbiota and Metabolome in Offspring Piglets
Cited by: 5
Author(s): Qin He, Tiande Zou, Jun Chen, Jia He, Jian Li, Fei Xie, Jinming You, Zi-Rui Wang
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-50602-5

Next-Generation Sequencing reveals relationship between the larval microbiome and food substrate in the polyphagous Queensland fruit fly
Cited by: 21
Author(s): Rajib Majumder, Brodie Sutcliffe, Phillip W. Taylor, Toni A. Chapman
Software Mentions: 3
Published: almost 7 years ago

10.3389/fphys.2020.524833

Effects of Immunization With the Soil-Derived Bacterium Mycobacterium vaccae on Stress Coping Behaviors and Cognitive Performance in a “Two Hit” Stressor Model
Cited by: 10
Author(s): Christine L. Foxx, Jared D. Heinze, Antonio González, Fernando Vargas, Michael V. Baratta, Ahmed Elsayed, Jessica R. Stewart, Kelsey M. Loupy, Mathew R. Arnold, Michael C. Flux, Saydie A Sago, Philip H. Siebler, Lauren N. Milton, Margaret W. Lieb, James E. Hassell, David Glenn Smith, Kyo A K Lee, Sandra A. Appiah, Evan J. Schaefer, Morgan Panitchpakdi, Nicole Sikora, Kelly C. Weldon, Christopher E. Stamper, Dominic Schmidt, David A Duggan, Yosan M Mengesha, Mikale Ogbaselassie, Kadi T. Nguyen, Chloé A. Gates, K’Loni S. Schnabel, Linh Tran, Joslynn D Jones, Martha Hotz Vitaterna, Fred W. Turek, Monika Fleshner, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Christopher A. Lowry
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.735022

Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation
Cited by: 4
Author(s): Paul B. L. George, David B. Fidler, Joy D. Van Nostrand, Jonathan A. Atkinson, Sacha J. Mooney, Simon Creer, Robert I. Griffiths, James E. McDonald, David A. Robinson, Davey L. Jones
Software Mentions: 3
Published: almost 5 years ago

10.1007/s10493-018-0314-3

Response of soil mites (Acari, Mesostigmata) to long-term Norway spruce plantation along a mountain stream
Cited by: 10
Author(s): Jacek Kamczyc, Maciej Skorupski, Marcin K. Dyderski, Anna Gazda, Mariusz Hachułka, Paweł Horodecki, Izabela Kałucka, Marek Malicki, Remigiusz Pielech, Michał Smoczyk, Sylwia Wierzcholska, Andrzej M. Jagodziński
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-020-58587-2

Microbial Diversity and Metabolite Profiles of Palm Wine Produced From Three Different Palm Tree Species in Côte d’Ivoire
Cited by: 26
Author(s): Théodore N. Djeni, Karen H. Kouame, Francine D. M. Ake, Laurent S. T. Amoikon, Marcellin Koffi Djè, Kumaraswamy Jeyaram
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22041511

Distinctive Microbial Signatures and Gut-Brain Crosstalk in Pediatric Patients with Coeliac Disease and Type 1 Diabetes Mellitus
Cited by: 9
Author(s): Parul Singh, Arun K. Rawat, Bara Al‐Jarrah, Saras Saraswathi, Hoda Gad, Mamoun Elawad, Khalid Hussain, Mohammed A. Hendaus, Wesam Almasri, Rayaz A. Malik, Souhaila Al Khodor, Anthony K Akobeng
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22041567

Mild Effects of Sunscreen Agents on a Marine Flatfish: Oxidative Stress, Energetic Profiles, Neurotoxicity and Behaviour in Response to Titanium Dioxide Nanoparticles and Oxybenzone
Cited by: 16
Author(s): Ana Carvalhais, Bárbara Luísa Corradi Pereira, Mariangela Sabato, Rafaela Seixas, Marina Dolbeth, Ana Marques, Sofia Guilherme, Patrícia Pereira, Mário Pacheco, C.L. Mieiro
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1008251

CFTR dysregulation drives active selection of the gut microbiome
Cited by: 50
Author(s): Stacey Meeker, Kevin S Mears, Naseer Sangwan, M. Brittnacher, Eli Weiss, Piper M. Treuting, Nicholas Tolley, Charles E. Pope, Kyle R. Hager, Anh T. Vo, Ji-Sun Paik, Charles W. Frevert, Hillary S. Hayden, Lucas R. Hoffman, Samuel I. Miller, Adeline M. Hajjar
Software Mentions: 3
Published: over 6 years ago

10.3389/fnut.2021.727714

Effects of Different Combinations of Sugar and Starch Concentrations on Ruminal Fermentation and Bacterial-Community Composition in vitro
Cited by: 9
Author(s): Jianan Dong, Song-ze Li, Xue Chen, Guixin Qin, Tao Wang, Zhe Sun, Di Wu, Zhao Wang, Natnael Demelash, Xuefeng Zhang, Yuguo Zhen
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-52601-y

Diversified Floral Resource Plantings Support Bee Communities after Apple Bloom in Commercial Orchards
Cited by: 12
Author(s): Sarah Heller, Neelendra K. Joshi, Timothy W. Leslie, Edwin G. Rajotte, David J. Biddinger
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-96283-x

Individual and population dietary specialization decline in fin whales during a period of ecosystem shift
Cited by: 7
Author(s): Jory Cabrol, Véronique Lesage, Alexandra Leclerc, Janie Giard, Sara J. Iverson, Martine Bérubé, Robert Michaud, Christian Nozais
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms22062784

Urinary Exosomes Identify Inflammatory Pathways in Vancomycin Associated Acute Kidney Injury
Cited by: 12
Author(s): Linda Awdishu, Amy Le, Jordan Amato, Vidhyut Jani, Soma Bal, Robert H. Mills, Marvic Carrillo-Terrazas, David J. Gonzalez, Ashita J. Tolwani, Anjali Acharya, Jorge Cerdá, Melanie S. Joy, Paola Nicoletti, Etienne Macedo, Sucheta M. Vaingankar, Ravindra L. Mehta, Satish P. RamachandraRao
Software Mentions: 3
Published: over 5 years ago

10.1007/s11356-018-3765-5

Inter-species and inter-colony differences in elemental concentrations in eggshells of sympatrically nesting great cormorants Phalacrocorax carbo and grey herons Ardea cinerea
Cited by: 2
Author(s): Dariusz Jakubas, Ignacy Kitowski, Dariusz Wiącek, Szymon Bzoma
Software Mentions: 3
Published: almost 8 years ago

10.1111/eva.12658

Structural and compositional mismatch between captive and wild Atlantic salmon (Salmo salar) parrs’ gut microbiota highlights the relevance of integrating molecular ecology for management and conservation methods
Cited by: 30
Author(s): Camille Lavoie, Maxime Courcelle, Baptise Redivo, Nicolas Derôme
Software Mentions: 3
Published: about 8 years ago

10.3389/fonc.2021.651350

The Landscape of Microbial Composition and Associated Factors in Pancreatic Ductal Adenocarcinoma Using RNA-Seq Data
Cited by: 3
Author(s): Dong Yu, Tengjiao Wang, Dong Liang, Mei Yue, Wenbin Zou, Shiwei Guo
Software Mentions: 3
Published: over 5 years ago

10.1038/s41398-021-01504-6

Gut microbiota signature in treatment-naïve attention-deficit/hyperactivity disorder
Cited by: 20
Author(s): Vanesa Richarte, Cristina Sánchez-Mora, Montse Corrales, Christian Fadeuilhe, Laura Vilar-Ribó, Lorena Arribas, Estela Camus García, Silvia Karina Rosales-Ortiz, Alejandro Arias-Vásquez, María Soler Artigas, Marta Ribasés, Josep Antoni Ramos‐Quiroga
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-62224-3

Implication of the gut microbiome composition of type 2 diabetic patients from northern China
Cited by: 93
Author(s): Qian Li, Yen-Yu Chang, Ke Zhang, Hao Chen, Tao Shen, Zhi Zhang
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22136843

Comparison of Gut Bacterial Communities of Grapholita molesta (Lepidoptera: Tortricidae) Reared on Different Host Plants
Cited by: 23
Author(s): Xiangqun Yuan, Xuan Zhang, Xueying Liu, Yanlu Dong, Zizheng Yan, Dongbiao Lv, Ping Wang, Yiping Li
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2021.666510

New Insights From Transcriptomic Data Reveal Differential Effects of CO2 Acidification Stress on Photosynthesis of an Endosymbiotic Dinoflagellate in hospite
Cited by: 2
Author(s): Marcela Herrera, Yi Jin Liew, Alexander A. Venn, Éric Tambutté, Didier Zoccola, Sylvie Tambutté, Guoxin Cui, Manuel Aranda
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms22179657

K-Mer Analyses Reveal Different Evolutionary Histories of Alpha, Beta, and Gamma Papillomaviruses
Cited by: 6
Author(s): Zigui Chen, Filippo Utro, Daniel E. Platt, Rob DeSalle, Laxmi Parida, Paul K.S. Chan, Robert D. Burk
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2018.01999

Insights Into Culturomics of the Rumen Microbiome
Cited by: 32
Author(s): Tamar Zehavi, Maraike Probst, Itzhak Mizrahi
Software Mentions: 3
Published: about 8 years ago

10.3389/fonc.2020.01029

Abnormal Food Timing Promotes Alcohol-Associated Dysbiosis and Colon Carcinogenesis Pathways
Cited by: 5
Author(s): Faraz Bishehsari, Shirin Moossavi, Phillip A. Engen, Xiaohan Liu, Yue Zhang
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms221910747

16S rRNA of Mucosal Colon Microbiome and CCL2 Circulating Levels Are Potential Biomarkers in Colorectal Cancer
Cited by: 14
Author(s): Carmela Nardelli, Ilaria Granata, Marcella Nunziato, Mario Setaro, Fortunata Carbone, Claudio Zulli, Vincenzo Pilone, Ettore Capoluongo, Giovanni Domenico De Palma, Francesco Corcione, Giuseppe Matarese, Francesco Salvatore, Lucia Sacchetti
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.psj.2021.101054

Orange corn diets associated with lower severity of footpad dermatitis in broilers
Cited by: 8
Author(s): Meagan E. Abraham, Shawna L. Weimer, Kailynn L. Scoles, José Israel Vargas, Timothy A. Johnson, C.I. Robison, Lisa Hoverman, Evan Rocheford, Torbert Rocheford, Darwin Ortiz, Darrin M. Karcher
Software Mentions: 3
Published: over 5 years ago

10.3390/nu11123006

Effect of Low-Protein Diet and Inulin on Microbiota and Clinical Parameters in Patients with Chronic Kidney Disease
Cited by: 38
Author(s): Silvia Lai, Alessio Molfino, Massimo Testorio, Adolfo Perrotta, Annachiara Currado, G Pintus, Daniele Pietrucci, Valeria Unida, Davide La Rocca, Silvia Biocca, Alessandro Desideri
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-61753-1

Resistance of seagrass habitats to ocean acidification via altered interactions in a tri-trophic chain
Cited by: 9
Author(s): Begoña Martínez-Crego, Salvatrice Vizzini, Gianmaria Califano, Alexia Massa-Gallucci, Cristina Andolina, María Cristina Gambi, Rui Santos
Software Mentions: 3
Published: over 6 years ago

10.1098/rspb.2016.0469

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence
Cited by: 54
Author(s): Robert A. Quinn, Mark J. A. Vermeij, Aaron C. Hartmann, Ines Galtier d'Auriac, Sean Benler, Andreas F. Haas, Steven D. Quistad, Yan Wei Lim, Mark Little, Stuart A. Sandin, Jennifer E. Smith, Pieter C. Dorrestein, Forest Rohwer
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2021.601253

Starvation Alters Gut Microbiome in Black Soldier Fly (Diptera: Stratiomyidae) Larvae
Cited by: 18
Author(s): Feng-Chun Yang, Jeffery K. Tomberlin, Heather R. Jordan
Software Mentions: 3
Published: over 5 years ago

10.12688/f1000research.9227.2

NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes
Cited by: 86
Author(s): Javier Ramiro-García, Gerben D. A. Hermes, Christos Giatsis, Detmer Sipkema, Erwin G. Zoetendal, Peter J. Schaap, Hauke Smidt
Software Mentions: 3
Published: almost 8 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning PERMANOVA 6,292