Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.3390/insects11090580
Parasitoid Abundance and Community Composition in Desert Vineyards and Their Adjacent Natural Habitats
Cited by: 9
Author(s): Michal Segoli, Miriam Kishinevsky, Tamir Rozenberg, Ishai Hoffmann
Software Mentions: 3
Published: over 4 years ago
10.7717/peerj.11283
Stable isotope and fatty acid analyses reveal significant differences in trophic niches of smooth hammerhead <i>Sphyrna zygaena</i> (Carcharhiniformes) among three nursery areas in northern Humboldt Current System
Cited by: 4
Author(s): Eduardo Segura‐Cobeña, Joanna Alfaro‐Shigueto, Jeffrey C. Mangel, Ángel Urzúa, Konrad Górski
Software Mentions: 3
Published: over 3 years ago
10.3390/insects11060340
Detection of Wolbachia Infections in Natural and Laboratory Populations of the Moroccan Hessian Fly, Mayetiola destructor (Say)
Cited by: 4
Author(s): Naima Bel Mokhtar, Amal Maurady, Mohammed Réda Britel, Mustapha El Bouhssini, Costas Batargias, Panagiota Stathopoulou, Elias Asimakis, George Tsiamis
Software Mentions: 3
Published: over 4 years ago
10.7717/peerj.11241
Consequences of herbal mixture supplementation on milk performance, ruminal fermentation, and bacterial diversity in water buffaloes
Cited by: 4
Author(s): Faiz‐ul Hassan, Zhengyi Tang, H. M. Ebeid, Mengwei Li, Kaiping Peng, Xin Liang, Chengjian Yang
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-87623-y
Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus
Cited by: 11
Author(s): Coralea Stephanou, Michalis Omirou, Laurent Philippot, Andreas M. Zissimos, Irene C. Christoforou, Slave Trajanoski, Anastasis Oulas, Ioannis M. Ioannides
Software Mentions: 3
Published: over 3 years ago
10.1186/s12967-019-1775-9
A novel signature derived from immunoregulatory and hypoxia genes predicts prognosis in liver and five other cancers
Cited by: 42
Author(s): Wai Hoong Chang, Dónall Forde, Alvina G. Lai
Software Mentions: 3
Published: almost 6 years ago
10.1007/s00265-017-2398-x
Does similarity in call structure or foraging ecology explain interspecific information transfer in wild Myotis bats?
Cited by: 20
Author(s): Theresa Hügel, Vincent Van Meir, Amanda Munoz-Meneses, B.-Markus Clarin, Björn Martin Siemers, Holger R. Goerlitz
Software Mentions: 3
Published: about 7 years ago
10.7717/peerj.11308
Seagrass structural and elemental indicators reveal high nutrient availability within a tropical lagoon in Panama
Cited by: 3
Author(s): Julie Gaubert-Boussarie, Andrew H. Altieri, J. Emmett Duffy, Justin E. Campbell
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.12165
Variability in deer diet and plant vulnerability to browsing among forests with different establishment years of sika deer
Cited by: 3
Author(s): Yuzu Sakata, Nami Shirahama, Ayaka Uechi, Kunihiro Okano
Software Mentions: 3
Published: about 3 years ago
10.7717/peerj.6090
Rapid increases in soil pH solubilise organic matter, dramatically increase denitrification potential and strongly stimulate microorganisms from the<i>Firmicutes</i>phylum
Cited by: 34
Author(s): Craig Anderson, Michelle E. Peterson, Rebekah A. Frampton, Simon Bulman, Sandi Keenan, D. Curtin
Software Mentions: 3
Published: almost 6 years ago
10.3390/insects11050268
Hydrocarbon Signatures of the Ectoparasitoid Sphecophaga vesparum Shows Wasp Host Dependency
Cited by: 4
Author(s): Cíntia Akemi Oi, Robert L. Brown, I. D. R. Stevens, Tom Wenseleers
Software Mentions: 3
Published: over 4 years ago
10.3390/insects11020125
Floral Species Richness Correlates with Changes in the Nutritional Quality of Larval Diets in a Stingless Bee
Cited by: 26
Author(s): Moritz Trinkl, Benjamin F. Kaluza, Helen M. Wallace, Tim A. Heard, Alexander Keller, Sara D. Leonhardt
Software Mentions: 3
Published: almost 5 years ago
10.1186/s42523-020-00068-y
Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)
Cited by: 7
Author(s): Raphael Eisenhofer, Kristofer M. Helgen, David A. Taggart
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12866-018-1367-5
Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study
Cited by: 13
Author(s): Martin Steen Mortensen, Bo Jensen, Jeanne V.A. Williams, Asker Brejnrod, Lee O’Brien Andersen, Dennis Röser, Bente Utoft Andreassen, Andreas Munk Petersen, Christen Rune Stensvold, Søren J. Sørensen, Karen A. Krogfelt
Software Mentions: 3
Published: about 6 years ago
10.1007/s11356-018-3765-5
Inter-species and inter-colony differences in elemental concentrations in eggshells of sympatrically nesting great cormorants Phalacrocorax carbo and grey herons Ardea cinerea
Cited by: 2
Author(s): Dariusz Jakubas, Ignacy Kitowski, Dariusz Wiącek, Szymon Bzoma
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0242553
Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol
Cited by: 3
Author(s): Fernanda Sayuri do Nascimento, Milena Oliveira Suzuki, João Victor Taba, Vitoria Carneiro de Mattos, Leonardo Zumerkorn Pipek, Eugênia Machado Carneiro D’Albuquerque, Leandro Ryuchi Iuamoto, Alberto Meyer, Wellington Andraus, João Renato Rebello Pinho, Eduardo Guimarães Hourneaux de Moura, João Carlos Setúbal, Luiz Augusto Carneiro-D’Albuquerque
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0189355
Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management
Cited by: 5
Author(s): Benjamin I. Ruttenberg, Jennifer E. Caselle, Andy Estep, Ayana Elizabeth Johnson, Kristen L. Marhaver, Lee J. Richter, Stuart A. Sandin, Mark J. A. Vermeij, Jennifer E. Smith, David Grenda, Abigail Libbin Cannon
Software Mentions: 3
Published: almost 7 years ago
10.1128/mSystems.01322-20
Longitudinal Profiling of the Macaque Vaginal Microbiome Reveals Similarities to Diverse Human Vaginal Communities
Cited by: 11
Author(s): Nicholas S Rhoades, Sara M Hendrickson, Danielle R. Gerken, Kassandra Martinez, Ov D. Slayden, Mark K. Slifka, Ilhem Messaoudi
Software Mentions: 3
Published: over 3 years ago
10.1111/eva.12658
Structural and compositional mismatch between captive and wild Atlantic salmon (<i>Salmo salar</i>) parrs’ gut microbiota highlights the relevance of integrating molecular ecology for management and conservation methods
Cited by: 30
Author(s): Camille Lavoie, Maxime Courcelle, Baptise Redivo, Nicolas Derôme
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0199291
Impact of chlorine dioxide disinfection of irrigation water on the epiphytic bacterial community of baby spinach and underlying soil
Cited by: 25
Author(s): Pilar Truchado, María I. Gil, Trevor Suslow, Ana Allende
Software Mentions: 3
Published: over 6 years ago
10.1186/s12917-020-02688-7
Transition of microbiota in chicken cecal droppings from commercial broiler farms
Cited by: 10
Author(s): Nachiko Takeshita, Takayasu Watanabe, Kasumi Ishida-Kuroki, Tsutomu Sekizaki
Software Mentions: 3
Published: almost 4 years ago
10.1186/s40793-019-0347-1
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
Cited by: 58
Author(s): Hyun S. Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, René Niehus, Alasdair T. M. Hubbard, Michael J. Bowes, Mark Bailey, Tim Peto, Sarah Hoosdally, A Sarah Walker, Robert Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser
Software Mentions: 3
Published: about 5 years ago
10.1186/s40793-021-00383-0
Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum development
Cited by: 17
Author(s): Yukun Gao, Jianghui Cui, Ge Ren, Wei Shilin, Yang Puyuan, Congpei Yin, Liang Hongkai, Chang Jin-hua
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0250423
Millet-based supplement restored gut microbial diversity of acute malnourished pigs
Cited by: 3
Author(s): Xuejing Li, Yan Hui, Bingfeng Leng, Jinhan Ren, Yanni Song, Lianqiang Che, Xi Peng, Baojia Huang, Songling Liu, Lin Li, Dennis Sandris Nielsen, Yong Li, Xiaoshuang Dai, Shancen Zhao
Software Mentions: 3
Published: over 3 years ago
10.1186/s43008-020-00042-y
Distinct fungal communities associated with different organs of the mangrove Sonneratia alba in the Malay Peninsula
Cited by: 11
Author(s): Nicole Li Ying Lee, Danwei Huang, Zheng Bin Randolph Quek, Jen Nie Lee, Benjamin J. Wainwright
Software Mentions: 3
Published: about 4 years ago
10.7717/peerj.4452
Characterization of shifts of koala (<i>Phascolarctos cinereus)</i> intestinal microbial communities associated with antibiotic treatment
Cited by: 28
Author(s): Katherine E. Dahlhausen, Ladan Doroud, Alana Firl, Adam Polkinghorne, Jonathan A. Eisen
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0130931
Towards an Understanding of the Interactions between Freshwater Inflows and Phytoplankton Communities in a Subtropical Estuary in the Gulf of Mexico
Cited by: 48
Author(s): Samuel Dorado, Tyra Booe, Jamie L. Steichen, Alison McInnes, Rachel Windham, Alicia K. Shepard, A. Lucchese, H. Preischel, James L. Pinckney, Stephen E. Davis, Daniel L. Roelke, Antonietta Quigg
Software Mentions: 3
Published: over 9 years ago
10.1128/mSystems.00295-18
A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by <i>Actinobacteria</i>
Cited by: 35
Author(s): Mallory J. Choudoir, Sam Rossabi, Matthew J. Gebert, Detlev Helmig, Noah Fierer
Software Mentions: 3
Published: over 5 years ago
10.1186/s13568-021-01200-0
Effects of altitude on human oral microbes
Cited by: 14
Author(s): Fang Liu, Tian Liang, Zhiying Zhang, Lijun Liu, Jing Li, Wenxue Dong, Han Zhang, Su Bai, Lifeng Ma, Longli Kang
Software Mentions: 3
Published: over 3 years ago
10.1080/19490976.2021.1972756
Dietary spinach reshapes the gut microbiome in an Apc-mutant genetic background: mechanistic insights from integrated multi-omics
Cited by: 14
Author(s): Ying‐Shiuan Chen, Jia Li, Rani Menon, Arul Jayaraman, Kyongbum Lee, Yun Huang, Wan‐Mohaiza Dashwood, Ke Zhang, Deqiang Sun
Software Mentions: 3
Published: almost 4 years ago
10.1080/19490976.2021.1966261
Impact of healthy aging on active bacterial assemblages throughout the gastrointestinal tract
Cited by: 5
Author(s): Kerstin Schütte, Christian Schulz, Ramiro Vílchez-Vargas, Riccardo Vasapolli, Frederike Palm, Bianca Simon, Dirk Schomburg, Anke Lux, Robert Geffers, Dietmar H. Pieper, Alexander Link, Peter Malfertheiner
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.2430
Environment and host species shape the skin microbiome of captive neotropical bats
Cited by: 46
Author(s): Virginie Lemieux-Labonté, Nicolas Tromas, B. Jesse Shapiro, François‐Joseph Lapointe
Software Mentions: 3
Published: about 8 years ago
10.1007/s10493-018-0314-3
Response of soil mites (Acari, Mesostigmata) to long-term Norway spruce plantation along a mountain stream
Cited by: 10
Author(s): Jacek Kamczyc, Maciej Skorupski, Marcin K. Dyderski, Anna Gazda, Mariusz Hachułka, Paweł Horodecki, Izabela Kałucka, Marek Malicki, Remigiusz Pielech, Michał Smoczyk, Sylwia Wierzcholska, Andrzej M. Jagodziński
Software Mentions: 3
Published: about 6 years ago
10.1111/1462-2920.14882
Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen
Cited by: 33
Author(s): S. Emilia Hannula, Hui Ma, Juan E. Pérez‐Jaramillo, Ana Pineda, T. Martijn Bezemer
Software Mentions: 3
Published: almost 5 years ago
10.7717/peerj.7744
Microbial communities associated with the black morel <i>Morchella sextelata</i> cultivated in greenhouses
Cited by: 41
Author(s): Gian Maria Niccolò Benucci, Reid Longley, Peng Zhang, Qi Zhao, Gregory Bonito, Fuqiang Yu
Software Mentions: 3
Published: about 5 years ago
10.1080/19490976.2021.1946366
Alterations in microbiota and their metabolites are associated with beneficial effects of bile acid sequestrant on icteric primary biliary Cholangitis
Cited by: 23
Author(s): Bo Li, Jun Zhang, Yong Chen, Qixia Wang, Yan Li, Rui Wang, Yiran Wei, Zhengrui You, Yikang Li, Qi Miao, Xiao Xiao, Min Lian, Weihua Chen, Dekai Qiu, Jing‐Yuan Fang, M. Eric Gershwin, Ruqi Tang, Xiong Ma
Software Mentions: 3
Published: almost 4 years ago
10.1111/1462-2920.15232
Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment
Cited by: 14
Author(s): Maria Pinto, Paula Polania Zenner, Teresa M. Langer, Jesse Patrick Harrison, Meinhard Simon, Marta M. Varela, Gerhard J. Herndl
Software Mentions: 3
Published: about 4 years ago
10.7717/peerj.10736
Acoustic cues to individuality in wild male adult African savannah elephants (<i>Loxodonta africana</i>)
Cited by: 4
Author(s): Kaja Wierucka, Michelle Henley, Hannah S. Mumby
Software Mentions: 3
Published: almost 4 years ago
10.12688/f1000research.9227.2
NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes
Cited by: 86
Author(s): Javier Ramiro-García, Gerben D. A. Hermes, Christos Giatsis, Detmer Sipkema, Erwin G. Zoetendal, Peter J. Schaap, Hauke Smidt
Software Mentions: 3
Published: about 6 years ago
10.1111/1462-2920.14043
Genomic insights into the <i>Acidobacteria</i> reveal strategies for their success in terrestrial environments
Cited by: 197
Author(s): Stephanie A. Eichorst, Daniela Trojan, Simon Roux, Craig W. Herbold, Thomas Rattei, Dagmar Woebken
Software Mentions: 3
Published: almost 7 years ago
10.1080/19490976.2021.1951113
The effect of early probiotic exposure on the preterm infant gut microbiome development
Cited by: 19
Author(s): Yan Hui, Birgitte Smith, Martin Steen Mortensen, Łukasz Krych, Søren J. Sørensen, Gorm Greisen, Karen A. Krogfelt, Dennis Sandris Nielsen
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.7455
Ultraviolet disinfection impacts the microbial community composition and function of treated wastewater effluent and the receiving urban river
Cited by: 13
Author(s): Imrose Kauser, Mark Ciesielski, Rachel Poretsky
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.4991
Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
Cited by: 24
Author(s): Anthony Barboza, Victor Satler Pylro, Rodrigo Josemar Seminot Jacques, Paulo Ivonir Gubiani, Fernando Luíz Ferreira de Quadros, Júlio Kuhn da Trindade, Eric W. Triplett, Luiz Fernando Würdig Roesch
Software Mentions: 3
Published: over 6 years ago
10.1111/1462-2920.14913
Extremely halophilic archaeal communities are resilient to short‐term entombment in halite
Cited by: 12
Author(s): Tom J. C. Huby, Dave R. Clark, Boyd A. McKew, Terry J. McGenity
Software Mentions: 3
Published: almost 5 years ago
10.12688/f1000research.27502.2
Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
Cited by: 2
Author(s): Hugo Maruyama, Ayako Masago, Takayuki Nambu, Chiho Mashimo, Kazuya Takahashi, Toshinori Okinaga
Software Mentions: 3
Published: over 3 years ago
10.1111/1462-2920.15024
Microbial community development on model particles in the deep sulfidic waters of the Black Sea
Cited by: 9
Author(s): Saara Suominen, Karlijn Doorenspleet, Jaap S. Sinninghe Damsté, Laura Villanueva
Software Mentions: 3
Published: over 4 years ago
10.1007/s00267-017-0889-1
Macroinvertebrate Taxonomic and Functional Trait Compositions within Lotic Habitats Affected By River Restoration Practices
Cited by: 30
Author(s): James C. White, Matthew J. Hill, Melanie A. Bickerton, Paul J. Wood
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0158937
Contrasting Pollinators and Pollination in Native and Non-Native Regions of Highbush Blueberry Production
Cited by: 39
Author(s): Jason Gibbs, Elizabeth Elle, Kyle Bobiwash, Tiia Haapalainen, Rufus Isaacs
Software Mentions: 3
Published: over 8 years ago
10.1038/s41426-018-0097-y
The concordance between upper and lower respiratory microbiota in children with <i>Mycoplasma pneumoniae</i> pneumonia
Cited by: 22
Author(s): Wenkui Dai, Heping Wang, Qian Zhou, Xin Feng, Zhiwei Lü, Dongfang Li, Zhenyu Yang, Yanhong Liu, Yinhu Li, Guoli Xie, Kunling Shen, Yonghong Yang, Yuejie Zheng, Shuai Cheng Li
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2020.570960
Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization
Cited by: 5
Author(s): Julieta Salgueiro, Lida E. Pimper, Diego Fernando Segura, Fabián Horacio Milla, Romina Russo, Elias Asimakis, Panagiota Stathopoulou, Kostas Bourtzis, Jorge Luis Cladera, George Tsiamis, Silvia Beatriz Lanzavecchia
Software Mentions: 3
Published: about 4 years ago
10.1002/ece3.4170
The bacterial community structure and functional profile in the heavy metal contaminated paddy soils, surrounding a nonferrous smelter in South Korea
Cited by: 73
Author(s): Sherlyn Tipayno, Jaak Truu, Sandipan Samaddar, Marika Truu, Jens‐Konrad Preem, Kristjan Oopkaup, Mikk Espenberg, Poulami Chatterjee, Young Kee Kang, Kiyoon Kim, Tongmin Sa
Software Mentions: 3
Published: over 6 years ago
10.1080/19490976.2021.1920657
Mapping the colorectal tumor microbiota
Cited by: 10
Author(s): Catherine Murphy, Maurice P. J. Barrett, Paola Pellanda, Shane Killeen, Morgan McCourt, Emmet Andrews, M O’ Riordain, Fergus Shanahan, O’Toole Pw
Software Mentions: 3
Published: almost 4 years ago
10.1093/femsec/fiaa163
Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure
Cited by: 19
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Ôlav Vadstein, Madeleine S. Gundersen, Ingrid Bakke
Software Mentions: 3
Published: over 4 years ago
10.1093/femsec/fiaa082
Vegetation type determines spore deposition within a forest–agricultural mosaic landscape
Cited by: 19
Author(s): Miguel Á. Redondo, Anna Berlin, Johanna Boberg, Jonàs Oliva
Software Mentions: 3
Published: over 4 years ago
10.1128/mSystems.00721-20
Rice <i>SST</i> Variation Shapes the Rhizosphere Bacterial Community, Conferring Tolerance to Salt Stress through Regulating Soil Metabolites
Cited by: 28
Author(s): Tengxiang Lian, Yingyong Huang, Xianan Xie, Xing Huo, Muhammad Qasim Shahid, Lei Tian, Tao Lan, Jing Jin
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.3121
Disentangling the genetic and morphological structure of <i>Patella candei</i> complex in Macaronesia (NE Atlantic)
Cited by: 10
Author(s): João Faria, Gustavo M. Martins, Alfonso Pita, Pedro A. Ribeiro, Stephen J. Hawkins, Pablo Presa, Ana I. Neto
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0163482
Using a Control to Better Understand Phyllosphere Microbiota
Cited by: 44
Author(s): Andrea Ottesen, S. Gorham, Elizabeth Reed, Michael J. Newell, Padmini Ramachandran, Travis Canida, Marc W. Allard, Peter W. Evans, Eric W. Brown, James R. White
Software Mentions: 3
Published: about 8 years ago
10.7717/peerj.7488
Factors associated with the composition and diversity of the cervical microbiota of reproductive-age Black South African women: a retrospective cross-sectional study
Cited by: 17
Author(s): Harris Onywera, Anna‐Lise Williamson, Zizipho Z. A. Mbulawa, David Coetzee, Tracy L. Meiring
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-021-89516-6
The lower respiratory tract microbiome of critically ill patients with COVID-19
Cited by: 42
Author(s): Paolo Gaibani, Elisa Viciani, Michele Bartoletti, Russell E. Lewis, Tommaso Tonetti, Donatella Lombardo, Andréa Castagnetti, Federica Bovo, Clara Solera Horna, Marco Ranieri, Pierluigi Viale, Maria Carla Re, Simone Ambretti
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2020.586050
The Aromatic Plant Clary Sage Shaped Bacterial Communities in the Roots and in the Trace Element-Contaminated Soil More Than Mycorrhizal Inoculation – A Two-Year Monitoring Field Trial
Cited by: 13
Author(s): Robin Raveau, Joël Fontaine, Mohamed Hijri, Anissa Lounès-Hadj Sahraoui
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.6997
In a comfort zone and beyond—Ecological plasticity of key marine mediators
Cited by: 13
Author(s): Emilia Trudnowska, Kaja Balazy, Joanna Stoń-Egiert, Irina Smolina, Thomas A. Brown, Marta Głuchowska
Software Mentions: 3
Published: about 4 years ago
10.1186/s42523-020-00048-2
Seasonal dynamics and starvation impact on the gut microbiome of urochordate ascidian Halocynthia roretzi
Cited by: 13
Author(s): Jiankai Wei, Hongwei Gao, Yang Yang, Haiming Liu, Haiyan Yu, Zigui Chen, Bo Dong
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.7820
Pitfall trap design affects the capture efficiency of harvestmen (Opiliones) and millipedes (Diplopoda)
Cited by: 1
Author(s): Slavomír Stašiov, Marek Čiliak, Michal Wiezik, Marek Svitok, Adela Wieziková, Andrea Diviaková
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2021.643679
Understanding the Shift in the Microbiome of Composts That Are Optimized for a Better Fit-for-Purpose in Growing Media
Cited by: 13
Author(s): Steffi Pot, Caroline De Tender, Sarah Ommeslag, Ilse Delcour, Johan Ceusters, E. Gorrens, Jane Debode, Bart Vandecasteele, Karen Vancampenhout
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.4346
Linking microbial co‐occurrences to soil ecological processes across a woodland‐grassland ecotone
Cited by: 36
Author(s): Samiran Banerjee, Peter H. Thrall, Andrew Bissett, Marcel G. A. van der Heijden, Alan Richardson
Software Mentions: 3
Published: over 6 years ago
10.1093/femsec/fiab022
Soil depth matters: shift in composition and inter-kingdom co-occurrence patterns of microorganisms in forest soils
Cited by: 39
Author(s): Sunil Mundra, O. Janne Kjønaas, Luis Morgado, Anders K. Krabberød, Yngvild Ransedokken, Håvard Kauserud
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.5078
It’s a matter of design—how pitfall trap design affects trap samples and possible predictions
Cited by: 25
Author(s): Fabian A. Boetzl, Elena Ries, Gudrun Schneider, Jochen Krauß
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2019.02576
Microbiome of Co-cultured Fish Exhibits Host Selection and Niche Differentiation at the Organ Scale
Cited by: 23
Author(s): Zhimin Zhang, Dapeng Li, Weigang Xu, Rong Tang, Li Li
Software Mentions: 3
Published: about 5 years ago
10.3389/fnins.2020.00127
Case-Control Study of the Effects of Gut Microbiota Composition on Neurotransmitter Metabolic Pathways in Children With Attention Deficit Hyperactivity Disorder
Cited by: 56
Author(s): Lin Wan, Wen-Rong Ge, Shan Zhang, Yulin Sun, Bin Wang, Guang Yang
Software Mentions: 3
Published: almost 5 years ago
10.1002/ece3.5963
Gut microbiota in reintroduction of giant panda
Cited by: 16
Author(s): Jingsi Tang, Chengdong Wang, Hemin Zhang, Jiangchao Zhao, Wei Guo, Saurabh Mishra, Fanli Kong, Bo Zeng, Ruihong Ning, Desheng Li, Jiandong Yang, Mingyao Yang, Mingwang Zhang, Qingyong Ni, Yan Li, Ying Liu
Software Mentions: 3
Published: almost 5 years ago
10.1002/ece3.5871
Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding
Cited by: 34
Author(s): Judith Bakker, Owen S. Wangensteen, Charles Baillie, Dayne Buddo, Demian D. Chapman, Austin J. Gallagher, Tristan L. Guttridge, Heidi Hertler, Stefano Mariani
Software Mentions: 3
Published: about 5 years ago
10.1093/femsec/fix117
Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control
Cited by: 25
Author(s): Johanna Mayerhofer, Sonja Eckard, Martin Hartmann, Giselher Grabenweger, Franco Widmer, Adrian Leuchtmann, Jürg Enkerli
Software Mentions: 3
Published: about 7 years ago
10.3389/fmicb.2018.02023
Vertical Distribution of Microbial Eukaryotes From Surface to the Hadal Zone of the Mariana Trench
Cited by: 34
Author(s): Zhimeng Xu, Min Wang, Wenxue Wu, Yifan Li, Qian Liu, Yuye Han, Hongbing Shao, Andrew McMinn, Hongbin Liu
Software Mentions: 3
Published: over 6 years ago
10.1002/ece3.6419
Rapid recovery of tropical forest diversity and structure after shifting cultivation in the Philippines uplands
Cited by: 12
Author(s): Sharif A. Mukul, John Herbohn, Jennifer Firn
Software Mentions: 3
Published: over 4 years ago
10.3389/fnins.2021.653120
Altered Gut Microbiota in a Fragile X Syndrome Mouse Model
Cited by: 15
Author(s): Francisco Altimiras, José García, Ismael Palacios-García, Michael Hurley, Robert M. J. Deacon, Bernardo González, Patricia Cogram
Software Mentions: 3
Published: over 3 years ago
10.1186/s12866-020-01829-0
Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study
Cited by: 26
Author(s): Shirin Moossavi, Kelsey Fehr, Hooman Derakhshani, Hind Sbihi, Bianca Robertson, Lars Bode, Jeffrey R. Brook, Stuart E. Turvey, Theo J. Moraes, Allan B. Becker, Piushkumar J. Mandhane, Malcolm R. Sears, Ehsan Khafipour, Padmaja Subbarao, Meghan B. Azad
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2019.02258
Composition and Drivers of Gut Microbial Communities in Arctic-Breeding Shorebirds
Cited by: 44
Author(s): Kirsten Grond, Jorge W. Santo Domingo, Richard B. Lanctot, Ari Jumpponen, Rebecca L. Bentzen, Megan L. Boldenow, Stephen C. Brown, Bruce Casler, Jenny A. Cunningham, Andrew C. Doll, Scott Freeman, Brooke L. Hill, Steven J. Kendall, Eunbi Kwon, Joseph R. Liebezeit, Lisa Pirie‐Dominix, Jennie Rausch, Brett K. Sandercock
Software Mentions: 3
Published: about 5 years ago
10.3389/fneur.2019.00727
A Systematic Review of the Microbiome in Children With Neurodevelopmental Disorders
Cited by: 23
Author(s): Eleonora Lacorte, Giuseppe Gervasi, Ilaria Bacigalupo, Nicola Vanacore, Umberto Raucci, Pasquale Parisi
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.7839
Soil microarthropods respond differently to simulated drought in organic and conventional farming systems
Cited by: 16
Author(s): Svenja Meyer, Dominika Kundel, Klaus Birkhofer, Andreas Fließbach, Stefan Scheu
Software Mentions: 3
Published: over 3 years ago
10.1016/j.foodhyd.2019.06.006
Changes in stool frequency following chicory inulin consumption, and effects on stool consistency, quality of life and composition of gut microbiota
Cited by: 31
Author(s): Anthony Watson, David Houghton, Peter Avery, Christopher J. Stewart, Elaine E. Vaughan, P Meyer, Minse J.J. de Bos Kuil, P.J.M. Weijs, Kirsten Brandt
Software Mentions: 3
Published: about 5 years ago
10.1186/s12889-018-5879-6
Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol
Cited by: 27
Author(s): Lara R. Dugas, Louise Lie, Jacob Plange‐Rhule, Kweku Bedu-Addo, Pascal Bovet, Estelle V. Lambert, Terrence Forrester, Amy Luke, Jack A. Gilbert, Brian T. Layden
Software Mentions: 3
Published: over 6 years ago
10.7717/peerj.11406
Shiftwork, functional bowel symptoms, and the microbiome
Cited by: 4
Author(s): Ann E. Rogers, Yi‐Juan Hu, Ye Yue, Emily F. Wissel, Robert A. Petit, Simone A. Jarrett, Jennifer Christie, Timothy D. Read
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.6279
Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs
Cited by: 27
Author(s): Kana Hayami, Masato Sakata, Takashi Inagawa, Jiro Okitsu, Izumi Katano, Hideyuki Doi, Katsuki Nakai, Hidetaka Ichiyanagi, Ryo O. Gotoh, Masaki Miya, Hirotoshi Sato, Hiroki Yamanaka, Toshifumi Minamoto
Software Mentions: 3
Published: over 4 years ago
10.1186/s12884-020-2764-y
Gestational diabetes and the human salivary microbiota: a longitudinal study during pregnancy and postpartum
Cited by: 21
Author(s): Mie Crusell, Lærke R. Brink, Trine Nielsen, Kristine H. Allin, Torben Hansen, Peter Damm, Jeannet Lauenborg, Oluf Pedersen
Software Mentions: 3
Published: almost 5 years ago
10.3389/fmolb.2020.590018
Metagenomic Analysis Reveals the Distribution of Antibiotic Resistance Genes in a Large-Scale Population of Healthy Individuals and Patients With Varied Diseases
Cited by: 13
Author(s): Qinwei Qiu, Jingjing Wang, Yuhong Yan, Bhaskar Roy, Chen Yang, Xuan Shang, Tingfeng Dou, Lijuan Han
Software Mentions: 3
Published: about 4 years ago
10.3389/fmicb.2018.01752
Airborne Bacteria in Earth's Lower Stratosphere Resemble Taxa Detected in the Troposphere: Results From a New NASA Aircraft Bioaerosol Collector (ABC)
Cited by: 61
Author(s): David J. Smith, Jayamary Divya Ravichandar, Sunit Jain, Dale W. Griffin, Hongbin Yu, Qian Tan, James B. Thissen, Terry C. Lusby, Patrick Nicoll, Sarah Shedler, Paul Martinez, Alejandro Zarur Osorio, Jason A. Lechniak, Samuel Choi, Kayleen Sabino, Kathryn Iverson, Luisa Chan, Crystal Jaing, John W. McGrath
Software Mentions: 3
Published: over 6 years ago
10.3390/foods10020362
Characterization of Bacterial Communities of Cold-Smoked Salmon during Storage
Cited by: 16
Author(s): Aurélien Maillet, Pauline Denojean, Agnès Bouju-Albert, Erwan Scaon, Sébastien Leuillet, Xavier Dousset, Emmanuel Jaffrès, Jérôme Combrisson, Hervé Prévost
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.6055
Cascading effects of climate change on plankton community structure
Cited by: 29
Author(s): Grace E. P. Murphy, Tamara N. Romanuk, Boris Worm
Software Mentions: 3
Published: almost 5 years ago
10.7717/peerj.659
The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types
Cited by: 83
Author(s): Jenna M. Lang, Jonathan A. Eisen, Angela M. Zivkovic
Software Mentions: 3
Published: almost 10 years ago
10.3389/fmicb.2018.02606
Understanding the Mechanisms Behind the Response to Environmental Perturbation in Microbial Mats: A Metagenomic-Network Based Approach
Cited by: 36
Author(s): Valerie De Anda, Icoquih Zapata‐Peñasco, Jazmín Blaz, Augusto César Poot-Hernández, Bruno Contreras‐Moreira, Marcos González-Laffitte, Niza Gámez-Tamariz, Maribel Hernández-Rosales, Luis E. Eguiarte, Valeria Souza
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2017.01812
Studying the Differences of Bacterial Metabolome and Microbiome in the Colon between Landrace and Meihua Piglets
Cited by: 21
Author(s): Shijuan Yan, Cui Zhu, Ting Yu, Wenjie Huang, Jianfeng Huang, Qian Kong, Jiandang Shi, Zhongjian Chen, Qinjian Liu, Shaolei Wang, Zongyong Jiang, Zhuang Chen
Software Mentions: 3
Published: about 7 years ago
10.1002/ece3.6764
Transcriptomics reveals specific molecular mechanisms underlying transgenerational immunity in <i>Manduca sexta</i>
Cited by: 6
Author(s): Charles Roesel, Rebeca B. Rosengaus, Wendy A. Smith, Steven V. Vollmer
Software Mentions: 3
Published: about 4 years ago
10.1128/mSystems.00864-19
Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture
Cited by: 31
Author(s): Max M. Villa, Rachael J. Bloom, Justin D. Silverman, Heather K. Durand, Sharon Jiang, Anchi Wu, Eric P. Dallow, Shuqiang Huang, You Li, Lawrence A. David
Software Mentions: 3
Published: over 4 years ago
10.3390/jpm11050350
Individual and Group Response of Treatment with Ivacaftor on Airway and Gut Microbiota in People with CF and a S1251N Mutation
Cited by: 10
Author(s): Maartje Kristensen, K.M. de Winter-de Groot, Gitte Berkers, Mei Ling J N Chu, Kayleigh Arp, S Sophie Ghijsen, H.G.M. Heijerman, Hubertus G.M. Arets, Christof J. Majoor, Hettie M. Janssens, Renske van der Meer, Debby Bogaert, Cornelis K. van der Ent
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.1435
Biogeographic variation in the microbiome of the ecologically important sponge,<i>Carteriospongia foliascens</i>
Cited by: 41
Author(s): Heidi M. Luter, Stefanie Widder, Emmanuelle S. Botté, Muhammad Abdul Wahab, Steve W Whalan, Lucas Moitinho‐Silva, Torsten Thomas, Nicole S. Webster
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0034558
Are We Predicting the Actual or Apparent Distribution of Temperate Marine Fishes?
Cited by: 30
Author(s): Jacquomo Monk, Daniel Ierodiaconou, Euan S. Harvey, Alex Rattray, Vincent L. Versace
Software Mentions: 3
Published: over 12 years ago
10.1371/journal.pone.0188445
Pericarpial nectary-visiting ants do not provide fruit protection against pre-dispersal seed predators regardless of ant species composition and resource availability
Cited by: 10
Author(s): Priscila Andre Sanz‐Veiga, Leonardo Ré Jorge, Santiago Benitez‐Vieyra, Felipe W. Amorim
Software Mentions: 3
Published: almost 7 years ago
10.3389/fmicb.2019.00726
Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in Piglets
Cited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.3689
Diversity of compounds in femoral secretions of Galápagos iguanas (genera:<i>Amblyrhynchus</i>and<i>Conolophus</i>), and their potential role in sexual communication in lek-mating marine iguanas (<i>Amblyrhynchus cristatus</i>)
Cited by: 10
Author(s): Alejandro Ibáñez, Markus Menke, Galo Quezada, Gustavo Jiménez-Uzcátegui, Stefan Schulz, Sebastian Steinfartz
Software Mentions: 3
Published: over 7 years ago
10.1002/ece3.5017
The distribution of plant consumption traits across habitat types and the patterns of fruit availability suggest a mechanism of coexistence of two sympatric frugivorous mammals
Cited by: 7
Author(s): Luc Roscelin Dongmo Tédonzong, Jacob Willie, Nikki Tagg, Martin Ngankam Tchamba, Tsi Evaristus Angwafo, Ada Myriane Patipe Keuko, Jacques Keumo Kuenbou, Charles‐Albert Petre, Luc Lens
Software Mentions: 3
Published: over 5 years ago