cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3164/jcbn.17-78

The influence of long-term use of proton pump inhibitors on the gut microbiota: an age-sex-matched case-control study
Cited by: 90
Author(s): Tomohisa Takagi, Yuji Naito, Ryo Inoüe, Saori Kashiwagi, Kazuhiko Uchiyama, Katsura Mizushima, Saeko Tsuchiya, Tetsuya Okayama, Osamu Dohi, Naohisa Yoshida, Kazuhiro Kamada, Takeshi Ishikawa, Osamu Handa, Hideyuki Konishi, Kayo Okuda, Yoshimasa Tsujimoto, Hiromu Ohnogi, Yoshito Itoh
Software Mentions: 3
Published: almost 7 years ago

10.1007/s10886-021-01278-7

Assessing the Role of Developmental and Environmental Factors in Chemical Defence Variation in Heliconiini Butterflies
Cited by: 2
Author(s): Ombeline Sculfort, Mélanie McClure, Bastien Nay, Marianne Élias, Violaine Llaurens
Software Mentions: 3
Published: over 3 years ago

10.7150/jca.50918

Comparison of clinicopathological parameters, prognosis, micro-ecological environment and metabolic function of Gastric Cancer with or without Fusobacterium sp. Infection
Cited by: 15
Author(s): Siru Nie, Ang Wang, Yuan Yuan
Software Mentions: 3
Published: almost 4 years ago

10.1074/jbc.RA120.015771

Obesity-associated microbiota contributes to mucus layer defects in genetically obese mice
Cited by: 26
Author(s): Bjoern O. Schroeder, George Birchenough, Meenakshi Pradhan, Eva Nyström, Marcus Henricsson, Gunnar C. Hansson, Fredrik Bäckhed
Software Mentions: 3
Published: about 4 years ago

10.1186/s40104-020-00461-2

Dietary energy sources and levels shift the multi-kingdom microbiota and functions in the rumen of lactating dairy cows
Cited by: 22
Author(s): Tansol Park, Lu Ma, Ying Ma, Xinan Zhou, Dengpan Bu, Zhongtang Yu
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0213733

Michigan cohorts to determine associations of maternal pre-pregnancy body mass index with pregnancy and infant gastrointestinal microbial communities: Late pregnancy and early infancy
Cited by: 46
Author(s): Kameron Y. Sugino, Nigel Paneth, Sarah S. Comstock
Software Mentions: 3
Published: over 5 years ago

10.3390/jpm11050350

Individual and Group Response of Treatment with Ivacaftor on Airway and Gut Microbiota in People with CF and a S1251N Mutation
Cited by: 10
Author(s): Maartje Kristensen, K.M. de Winter-de Groot, Gitte Berkers, Mei Ling J N Chu, Kayleigh Arp, S Sophie Ghijsen, H.G.M. Heijerman, Hubertus G.M. Arets, Christof J. Majoor, Hettie M. Janssens, Renske van der Meer, Debby Bogaert, Cornelis K. van der Ent
Software Mentions: 3
Published: over 3 years ago

10.1128/mSphere.00950-19

Influences of Ingredients and Bakers on the Bacteria and Fungi in Sourdough Starters and Bread
Cited by: 44
Author(s): Aspen T. Reese, Anne A. Madden, Marie Joossens, Lacaze Guylaine, Robert R. Dunn
Software Mentions: 3
Published: almost 5 years ago

10.1128/mSphere.00271-19

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints
Cited by: 36
Author(s): Andrés Gómez, Ashok Sharma, Elizabeth K. Mallott, Klára J. Petrželková, Carolyn A. Jost Robinson, Carl J. Yeoman, Franck Carbonero, Barbora Pafčo, Jessica M. Rothman, Alexander Ulanov, Klára Vlčková, Katherine R. Amato, Stephanie L. Schnorr, Nathaniel J. Dominy, David Modrý, Angelique Todd, Manolito Torralba, Karen E. Nelson, Michael B. Burns, Ran Blekhman, Melissa J. Remis, Rebecca M. Stumpf, Brenda A. Wilson, H. Rex Gaskins, Paul A. Garber, Bryan A. White, Steven R. Leigh
Software Mentions: 3
Published: over 5 years ago

10.1186/s13006-020-00285-w

Breastfeeding may have a long-term effect on oral microbiota: results from the Fin-HIT cohort
Cited by: 12
Author(s): Ilana Eshriqui, Heli Viljakainen, Sandra Roberta Gouvêa Ferreira, Sajan C. Raju, Elisabete Weiderpass, Rejane Augusta de Oliveira Figueiredo
Software Mentions: 3
Published: over 4 years ago

10.3390/microorganisms9010075

On-Site Blackwater Treatment Fosters Microbial Groups and Functions to Efficiently and Robustly Recover Carbon and Nutrients
Cited by: 3
Author(s): Eiko E. Kuramae, Maurício R. Dimitrov, Gustavo H. R. da Silva, Adriano Reis Lucheta, Lucas William Mendes, Ronildson Lima Luz, Louise E. M. Vet, Tânia V. Fernandes
Software Mentions: 3
Published: almost 4 years ago

10.3390/insects11100718

Bacterial Communities of Ixodes scapularis from Central Pennsylvania, USA
Cited by: 8
Author(s): Joyce M. Sakamoto, Gabriel Enrique Silva Diaz, Elizabeth A. Wagner
Software Mentions: 3
Published: about 4 years ago

10.3390/foods10020362

Characterization of Bacterial Communities of Cold-Smoked Salmon during Storage
Cited by: 16
Author(s): Aurélien Maillet, Pauline Denojean, Agnès Bouju-Albert, Erwan Scaon, Sébastien Leuillet, Xavier Dousset, Emmanuel Jaffrès, Jérôme Combrisson, Hervé Prévost
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.5676

Evidence for host effect on the intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids
Cited by: 22
Author(s): Maelle Sevellec, Martin Laporte, Alex Bernatchez, Nicolas Derôme, Louis Bernatchez
Software Mentions: 3
Published: about 5 years ago

10.3390/insects11090580

Parasitoid Abundance and Community Composition in Desert Vineyards and Their Adjacent Natural Habitats
Cited by: 9
Author(s): Michal Segoli, Miriam Kishinevsky, Tamir Rozenberg, Ishai Hoffmann
Software Mentions: 3
Published: about 4 years ago

10.3390/foods10092040

Impact of Plant-Based Meat Alternatives on the Gut Microbiota of Consumers: A Real-World Study
Cited by: 36
Author(s): Miguel Toribio-Mateas, Adri Bester, Natalia Klimenko
Software Mentions: 3
Published: about 3 years ago

10.1002/ece3.5814

Contrasting effects of land‐use changes on herbivory and pollination networks
Cited by: 15
Author(s): Naoto Shinohara, Keiji Uchida, Takehito Yoshida
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0222536

A mutation in mouse Krüppel-like factor 15 alters the gut microbiome and response to obesogenic diet
Cited by: 3
Author(s): Karen L. Svenson, Lauren L. Long, Steven L. Ciciotte, Mark D. Adams
Software Mentions: 3
Published: about 5 years ago

10.3390/insects11060340

Detection of Wolbachia Infections in Natural and Laboratory Populations of the Moroccan Hessian Fly, Mayetiola destructor (Say)
Cited by: 4
Author(s): Naima Bel Mokhtar, Amal Maurady, Mohammed Réda Britel, Mustapha El Bouhssini, Costas Batargias, Panagiota Stathopoulou, Elias Asimakis, George Tsiamis
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2016.00476

Diversity and Temporal Dynamics of the Epiphytic Bacterial Communities Associated with the Canopy-Forming Seaweed Cystoseira compressa (Esper) Gerloff and Nizamuddin
Cited by: 76
Author(s): Francesco Paolo Mancuso, Sofie D’hondt, Anne Willems, Laura Airoldi, Olivier De Clerck
Software Mentions: 3
Published: over 8 years ago

10.1128/mSphereDirect.00211-19

Laryngotracheal Microbiota in Adult Laryngotracheal Stenosis
Cited by: 30
Author(s): Alexander T. Hillel, Sharon Tang, Camila Carlos, Joseph H. Skarlupka, Madhu Gowda, Linda X. Yin, Kevin Motz, Cameron R. Currie, Garret Suen, Susan L. Thibeault
Software Mentions: 3
Published: over 5 years ago

10.3390/insects11050268

Hydrocarbon Signatures of the Ectoparasitoid Sphecophaga vesparum Shows Wasp Host Dependency
Cited by: 4
Author(s): Cíntia Akemi Oi, Robert L. Brown, I. D. R. Stevens, Tom Wenseleers
Software Mentions: 3
Published: over 4 years ago

10.3390/insects11020125

Floral Species Richness Correlates with Changes in the Nutritional Quality of Larval Diets in a Stingless Bee
Cited by: 26
Author(s): Moritz Trinkl, Benjamin F. Kaluza, Helen M. Wallace, Tim A. Heard, Alexander Keller, Sara D. Leonhardt
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.6259

Summer aridity rather than management shapes fitness‐related functional traits of the threatened mountain plant Arnica montana
Cited by: 6
Author(s): Nils Stanik, Christian Lampei, Gert Rosenthal
Software Mentions: 3
Published: over 4 years ago

10.1186/s40168-019-0759-6

Compositional homogeneity in the pathobiome of a new, slow-spreading coral disease
Cited by: 31
Author(s): Michael Sweet, Alfred Burian, James E. Fifer, Mark T. Bulling, David R. Elliott, Laurie J. Raymundo
Software Mentions: 3
Published: about 5 years ago

10.1186/s43008-020-00042-y

Distinct fungal communities associated with different organs of the mangrove Sonneratia alba in the Malay Peninsula
Cited by: 11
Author(s): Nicole Li Ying Lee, Danwei Huang, Zheng Bin Randolph Quek, Jen Nie Lee, Benjamin J. Wainwright
Software Mentions: 3
Published: about 4 years ago

10.1080/19490976.2021.1972756

Dietary spinach reshapes the gut microbiome in an Apc-mutant genetic background: mechanistic insights from integrated multi-omics
Cited by: 14
Author(s): Ying‐Shiuan Chen, Jia Li, Rani Menon, Arul Jayaraman, Kyongbum Lee, Yun Huang, Wan‐Mohaiza Dashwood, Ke Zhang, Deqiang Sun
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2018.01998

Intra-host Symbiont Diversity and Extended Symbiont Maintenance in Photosymbiotic Acantharea (Clade F)
Cited by: 14
Author(s): Margaret Mars Brisbin, Lisa Y. Mesrop, Mary M. Grossmann, Satoshi Mitarai
Software Mentions: 3
Published: over 6 years ago

10.1080/19490976.2021.1966261

Impact of healthy aging on active bacterial assemblages throughout the gastrointestinal tract
Cited by: 5
Author(s): Kerstin Schütte, Christian Schulz, Ramiro Vílchez-Vargas, Riccardo Vasapolli, Frederike Palm, Bianca Simon, Dirk Schomburg, Anke Lux, Robert Geffers, Dietmar H. Pieper, Alexander Link, Peter Malfertheiner
Software Mentions: 3
Published: almost 4 years ago

10.1080/19490976.2021.1946366

Alterations in microbiota and their metabolites are associated with beneficial effects of bile acid sequestrant on icteric primary biliary Cholangitis
Cited by: 23
Author(s): Bo Li, Jun Zhang, Yong Chen, Qixia Wang, Yan Li, Rui Wang, Yiran Wei, Zhengrui You, Yikang Li, Qi Miao, Xiao Xiao, Min Lian, Weihua Chen, Dekai Qiu, Jing‐Yuan Fang, M. Eric Gershwin, Ruqi Tang, Xiong Ma
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0246687

Comparison of wild rice (Oryza longistaminata) tissues identifies rhizome-specific bacterial and archaeal endophytic microbiomes communities and network structures
Cited by: 7
Author(s): Xiaojue Peng, Jian Xie, Wenzhuo Li, Haizhu Xie, Yaohui Cai, Xia Ding
Software Mentions: 3
Published: almost 4 years ago

10.1093/molbev/msab195

Molecular Evolutionary Dynamics of Energy Limited Microorganisms
Cited by: 3
Author(s): William R. Shoemaker, Evgeniya Polezhaeva, Kenzie B. Givens, Jay T. Lennon
Software Mentions: 3
Published: over 3 years ago

10.1080/19490976.2021.1951113

The effect of early probiotic exposure on the preterm infant gut microbiome development
Cited by: 19
Author(s): Yan Hui, Birgitte Smith, Martin Steen Mortensen, Łukasz Krych, Søren J. Sørensen, Gorm Greisen, Karen A. Krogfelt, Dennis Sandris Nielsen
Software Mentions: 3
Published: almost 4 years ago

10.1186/s40168-019-0735-1

Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm
Cited by: 34
Author(s): Suraj Gupta, Gustavo Arango-Argoty, Liqing Zhang, Amy Pruden, Peter J. Vikesland
Software Mentions: 3
Published: over 5 years ago

10.1080/19490976.2021.1920657

Mapping the colorectal tumor microbiota
Cited by: 10
Author(s): Catherine Murphy, Maurice P. J. Barrett, Paola Pellanda, Shane Killeen, Morgan McCourt, Emmet Andrews, M O’ Riordain, Fergus Shanahan, O’Toole Pw
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.5658

Not going with the flow: Locomotor activity does not constrain immunity in a wild fish
Cited by: 2
Author(s): Numair Masud, Rebecca Synnott, Pascal I. Hablützel, Ida M. Friberg, Joanne Cable, Joseph A. Jackson
Software Mentions: 3
Published: about 5 years ago

10.3389/fnins.2020.00127

Case-Control Study of the Effects of Gut Microbiota Composition on Neurotransmitter Metabolic Pathways in Children With Attention Deficit Hyperactivity Disorder
Cited by: 56
Author(s): Lin Wan, Wen-Rong Ge, Shan Zhang, Yulin Sun, Bin Wang, Guang Yang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2021.674556

Rhizosphere Bacterial Networks, but Not Diversity, Are Impacted by Pea-Wheat Intercropping
Cited by: 13
Author(s): Barbara Pivato, Amélie Semblat, Thibault Guégan, Samuel Jacquiod, Juliette Martin, Florence Deau, Nathalie Moutier, Christophe Lecomte, Judith Burstin, Philippe Lemanceau
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2017.02096

Cadaver Thanatomicrobiome Signatures: The Ubiquitous Nature of Clostridium Species in Human Decomposition
Cited by: 52
Author(s): Gulnaz T. Javan, Sheree J. Finley, Tasia M. Smith, Joselyn Miller, Jeremy E. Wilkinson
Software Mentions: 3
Published: about 7 years ago

10.3389/fnins.2021.653120

Altered Gut Microbiota in a Fragile X Syndrome Mouse Model
Cited by: 15
Author(s): Francisco Altimiras, José García, Ismael Palacios-García, Michael Hurley, Robert M. J. Deacon, Bernardo González, Patricia Cogram
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.4070

Gene(s) and individual feeding behavior: Exploring eco-evolutionary dynamics underlying left-right asymmetry in the scale-eating cichlid fishPerissodus microlepis
Cited by: 2
Author(s): Francesca Raffini, Carmelo Fruciano, Axel Meyer
Software Mentions: 3
Published: over 6 years ago

10.3389/fneur.2019.00727

A Systematic Review of the Microbiome in Children With Neurodevelopmental Disorders
Cited by: 23
Author(s): Eleonora Lacorte, Giuseppe Gervasi, Ilaria Bacigalupo, Nicola Vanacore, Umberto Raucci, Pasquale Parisi
Software Mentions: 3
Published: over 5 years ago

10.1111/mec.14895

Biodiversity–function relationships in methanogenic communities
Cited by: 25
Author(s): Pawel Sierocinski, Florian Bayer, Gabriel Yvon‐Durocher, Melia Burdon, Tobias Großkopf, Mark Alston, David Swarbreck, P. J. Hobbs, Orkun S. Soyer, Angus Buckling
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0124599

Sex, Body Mass Index, and Dietary Fiber Intake Influence the Human Gut Microbiome
Cited by: 303
Author(s): Christine Dominianni, Rashmi Sinha, James J. Goedert, Zhiheng Pei, Liying Yang, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 3
Published: over 9 years ago

10.3389/fmolb.2020.590018

Metagenomic Analysis Reveals the Distribution of Antibiotic Resistance Genes in a Large-Scale Population of Healthy Individuals and Patients With Varied Diseases
Cited by: 13
Author(s): Qinwei Qiu, Jingjing Wang, Yuhong Yan, Bhaskar Roy, Chen Yang, Xuan Shang, Tingfeng Dou, Lijuan Han
Software Mentions: 3
Published: about 4 years ago

10.1111/mec.12638

Bacterial profiling of <scp>W</scp> hite <scp>P</scp> lague Disease across corals and oceans indicates a conserved and distinct disease microbiome
Cited by: 74
Author(s): Cornelia Roder, Chatchanit Arif, Camille Daniels, Ernesto Weil, Christian R. Voolstra
Software Mentions: 3
Published: almost 11 years ago

10.3389/fmicb.2019.00726

Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in Piglets
Cited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2015.00729

Bacterial diversity differences along an epigenic cave stream reveal evidence of community dynamics, succession, and stability
Cited by: 16
Author(s): Kathleen Merritt Brannen-Donnelly, Annette Summers Engel
Software Mentions: 3
Published: over 9 years ago

10.1186/s40168-019-0753-z

The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
Cited by: 20
Author(s): Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David Jayne, Andreas Kronbichler
Software Mentions: 3
Published: about 5 years ago

10.1186/s40168-020-00921-x

Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae)
Cited by: 21
Author(s): Joel J. Brown, Sonia M. Rodríguez‐Ruano, Anbu Poosakkannu, Giampiero Batani, Justin O. Schmidt, Walter Roachell, Jan Zima, Václav Hypša, Eva Nováková
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2017.01832

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Cited by: 79
Author(s): Stephanie D. Jurburg, Inês Nunes, Asker Brejnrod, Samuel Jacquiod, Anders Priemé, Søren J. Sørensen, Jan Dirk van Elsas, Joana Falcão Salles
Software Mentions: 3
Published: about 7 years ago

10.1111/mec.14886

<scp>DNA</scp>metabarcoding unveils multiscale trophic variation in a widespread coastal opportunist
Cited by: 33
Author(s): Andjin Siegenthaler, Owen S. Wangensteen, Chiara Benvenuto, Joana Campos, Stefano Mariani
Software Mentions: 3
Published: about 6 years ago

10.1111/1755-0998.13215

Evaluation of primer pairs for microbiome profiling from soils to humans within the One Health framework
Cited by: 52
Author(s): . Wasimuddin, Klaus Schlaeppi, Francesca Ronchi, Stephen L. Leib, Matthias Erb, Alban Ramette
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.00625

Protective Effect of Carvacrol against Gut Dysbiosis and Clostridium difficile Associated Disease in a Mouse Model
Cited by: 15
Author(s): Shankumar Mooyottu, Genevieve Flock, Abhinav Upadhyay, Indu Upadhyaya, Kendra Maas, Kumar Venkitanarayanan
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2014.00526

Oligotyping reveals differences between gut microbiomes of free-ranging sympatric Namibian carnivores (Acinonyx jubatus, Canis mesomelas) on a bacterial species-like level
Cited by: 36
Author(s): Sebastian Menke, . Wasimuddin, Matthias Meier, JÃ¶rg Melzheimer, John K. E. Mfune, Sonja K. Heinrich, Susanne Thalwitzer, Bettina Wachter, Simone Sommer
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2016.01753

Deconstructing the Bat Skin Microbiome: Influences of the Host and the Environment
Cited by: 72
Author(s): Christine V. Avena, Laura Wegener Parfrey, Jonathan W. Leff, Holly Archer, Winifred F. Frick, Kate E. Langwig, A. Marm Kilpatrick, Karen Powers, Jeffrey T. Foster, Valerie J. McKenzie
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2018.02203

Metagenomics of Coral Reefs Under Phase Shift and High Hydrodynamics
Cited by: 9
Author(s): Pedro Milet Meirelles, Ana Carolina Soares, Louisi Souza de Oliveira, Luciana Leomil, Luciana Appolinario, Ronaldo B. Francini‐Filho, Rodrigo L. Moura, Renato Tenan de Barros Almeida, Paulo S. Salomon, Gilberto M. Amado‐Filho, Ricardo Henrique Krüger, Eduardo Siegle, Diogo A. Tschoeke, Isao Kudo, Sayaka Mino, Tomoo Sawabe, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2016.01231

Lichen-Associated Fungal Community in Hypogymnia hypotrypa (Parmeliaceae, Ascomycota) Affected by Geographic Distribution and Altitude
Cited by: 23
Author(s): Yanyan Wang, Yong Zheng, Xinyu Wang, Xinli Wei, Jiang-Chun Wei
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0210542

Endophytic bacterial communities in peels and pulp of five root vegetables
Cited by: 20
Author(s): Viia Kõiv, Krõõt Arbo, Ülo Maiväli, Veljo Kisand, Märt Roosaare, Maido Remm, Tanel Tenson
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.01772

Microbial Responses to Simulated Salinization and Desalinization in the Sediments of the Qinghai–Tibetan Lakes
Cited by: 15
Author(s): Jiangen Huang, Jian Yang, Hongchen Jiang, Geng Wu, Wen Li, Beichen Wang, Haiyi Xiao, Jibin Han
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.612257

Diversity and Genomic Characterization of a Novel Parvarchaeota Family in Acid Mine Drainage Sediments
Cited by: 20
Author(s): Zhen-Hao Luo, Qi Li, Yan Lai, Hao Chen, Bin Liao, Li-Nan Huang
Software Mentions: 3
Published: almost 4 years ago

10.3390/plants8090346

Early Detection of Sage (Salvia officinalis L.) Responses to Ozone Using Reflectance Spectroscopy
Cited by: 24
Author(s): Alessandra Marchica, Silvia Loré, Lorenzo Cotrozzi, Giacomo Lorenzini, Cristina Nali, Elisa Pellegrini, Damiano Remorini
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0032093

Spatial Scales of Bacterial Diversity in Cold-Water Coral Reef Ecosystems
Cited by: 39
Author(s): Sandra Schöttner, Christian Wild, Friederike Hoffmann, Antje Boetius, Alban Ramette
Software Mentions: 3
Published: over 12 years ago

10.3389/fmicb.2018.01758

Pedunculate Oaks (Quercus robur L.) Differing in Vitality as Reservoirs for Fungal Biodiversity
Cited by: 17
Author(s): Marta Agostinelli, Michelle Cleary, Juan A. Martín, Benedicte Riber Albrectsen, Johanna Witzell
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.571537

Ozone Decreased Enteric Methane Production by 20% in an in vitro Rumen Fermentation System
Cited by: 4
Author(s): Lucy Zhao, Eleonora Caro, Devin B. Holman, Katherine E. Gzyl, Peter J. Moate, Alex V. Chaves
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2017.02088

Alternative Growth Promoters Modulate Broiler Gut Microbiome and Enhance Body Weight Gain
Cited by: 72
Author(s): Debabrata Biswas, Seon-Woo Kim, Bradd J. Haley, Jo Ann S. Van Kessel, Debabrata Biswas
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2017.00102

Home-Made Cost Effective Preservation Buffer Is a Better Alternative to Commercial Preservation Methods for Microbiome Research
Cited by: 54
Author(s): Sebastian Menke, Mark A. F. Gillingham, Kerstin Wilhelm, Simone Sommer
Software Mentions: 3
Published: almost 8 years ago

10.1186/s40168-020-00892-z

Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression
Cited by: 148
Author(s): Chengyuan Tao, Rong Li, Wu Xiong, Zongzhuan Shen, Shanshan Liu, Beibei Wang, Yunze Ruan, Stefan Geisen, George A. Kowalchuk
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2016.00701

Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium
Cited by: 102
Author(s): Joshua C McCann, Shaoyu Luan, F.C. Cardoso, Hooman Derakhshani, Ehsan Khafipour, Juan J. Loor
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0119741

Multivariate and Phylogenetic Analyses Assessing the Response of Bacterial Mat Communities from an Ancient Oligotrophic Aquatic Ecosystem to Different Scenarios of Long-Term Environmental Disturbance
Cited by: 12
Author(s): Silvia Pajares, Valeria Souza, Luis E. Eguiarte
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2020.570960

Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization
Cited by: 5
Author(s): Julieta Salgueiro, Lida E. Pimper, Diego Fernando Segura, Fabián Horacio Milla, Romina Russo, Elias Asimakis, Panagiota Stathopoulou, Kostas Bourtzis, Jorge Luis Cladera, George Tsiamis, Silvia Beatriz Lanzavecchia
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2020.01598

Genetic Identity and Herbivory Drive the Invasion of a Common Aquatic Microbial Invader
Cited by: 1
Author(s): Sarah Bolius, Karoline Morling, Claudia Wiedner, Guntram Weithoff
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0204148

Artificial reservoirs complement natural ponds to improve pondscape resilience in conservation corridors in a biodiversity hotspot
Cited by: 29
Author(s): Charl Deacon, Michael J. Samways, James S. Pryke
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0204761

Microbial community structure and functional potential of lava-formed Gotjawal soils in Jeju, Korea
Cited by: 12
Author(s): Jong‐Shik Kim, Dae-Shin Kim, Keun Chul Lee, Jung-Sook Lee, Gary M. King, Sanghoon Kang
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2021.650440

Fungal Community Composition and Diversity Vary With Soil Horizons in a Subtropical Forest
Cited by: 17
Author(s): Xia Luo, Kezhong Liu, Yiming Shen, Guojing Yao, Wenge Yang, Peter E. Mortimer, Heng Gui
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2019.00257

Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area
Cited by: 36
Author(s): Clément Coclet, Cédric Garnier, Guy Durrieu, Dario Omanović, Sébastien D’Onofrio, Christophe Le Poupon, Jean-Ulrich Mullot, Jean‐François Briand, Benjamin Misson
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0015216

Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers
Cited by: 350
Author(s): Emily S. Charlson, Jun Chen, Rebecca Custers-Allen, Kyle Bittinger, Hongzhe Li, Rohini Sinha, Jennifer Hwang, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 3
Published: almost 14 years ago

10.1371/journal.pone.0237256

The abundance of arbuscular mycorrhiza in soils is linked to the total length of roots colonized at ecosystem level
Cited by: 18
Author(s): Milagros Barceló, Peter M. van Bodegom, Leho Tedersoo, Nadja den Haan, G.F. Veen, Ivika Ostonen, Krijn B. Trimbos, Nadejda A. Soudzilovskaia
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0191913

Metabarcoding analysis of eukaryotic microbiota in the gut of HIV-infected patients
Cited by: 20
Author(s): Ibrahim Hamad, Rita Abou Abdallah, Isabelle Ravaux, Saadia Mokhtari, Hervé Tissot‐Dupont, Caroline Michelle, Andréas Stein, Jean-Christophe Lagier, Didier Raoult, Fadi Bittar
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0251245

Gut microbiome differences among Mexican Americans with and without type 2 diabetes mellitus
Cited by: 6
Author(s): Amanda K. Kitten, Laurajo Ryan, Grace C. Lee, Belinda T. Flores, Kelly R. Reveles
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0100668

Leaf and Root-Associated Fungal Assemblages Do Not Follow Similar Elevational Diversity Patterns
Cited by: 95
Author(s): Aurore Coince, Tristan Cordier, Juliette Lengellé, Emmanuel Defossez, Corinne Vacher, Cécile Robin, Marc Buée, Benoît Marçais
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2020.00518

Depth Influences Symbiodiniaceae Associations Among Montastraea cavernosa Corals on the Belize Barrier Reef
Cited by: 24
Author(s): Ryan J. Eckert, Ashley M Reaume, Alexis B. Sturm, Michael S. Studivan, Joshua D. Voss
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0193711

Large-scale assessment of benthic communities across multiple marine protected areas using an autonomous underwater vehicle
Cited by: 17
Author(s): Renata Ferrari, Ezequiel M. Marzinelli, Camila Rezende Ayroza, Alan Jordan, Will F. Figueira, Maria Byrne, Hamish A. Malcolm, Stefan B. Williams, Peter D. Steinberg
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0222323

Upper versus lower airway microbiome and metagenome in children with cystic fibrosis and their correlation with lung inflammation
Cited by: 16
Author(s): Mariana E. Kirst, Dawn Baker, Eric Li, Mutasim Abu-Hasan, Gary P. Wang
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0227006

Association between baseline abundance of Peptoniphilus, a Gram-positive anaerobic coccus, and wound healing outcomes of DFUs
Cited by: 19
Author(s): Kyung Rok Min, Adriana Galvis, Katherine L. Baquerizo Nole, Rohita Sinha, Jennifer Clarke, Robert S. Kirsner, Dragana Ajdić
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0157890

Repeatability, Reproducibility, Separative Power and Subjectivity of Different Fish Morphometric Analysis Methods
Cited by: 24
Author(s): Péter Takács, Zoltán Vitál, Árpád Ferincz, Ádám Staszny
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2014.00531

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
Cited by: 58
Author(s): Maggie C. Y. Lau, Connor Cameron, Cara Magnabosco, C. Titus Brown, Faye Schilkey, Sharon L. Grim, Sarah Hendrickson, Michael J. Pullin, Barbara Sherwood Lollar, Esta van Heerden, Thomas L. Kieft, Tullis C. Onstott
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2020.536787

Combined Microbial Consortium Inoculation and Black Locust Planting Is Effective in the Bioremediation of Waste Drill Cuttings
Cited by: 3
Author(s): Hanjun Liu, Lirong Chen, En T. Wang, Yihao Liu, Lingzi Zhang, Ke Zhao, Yunfu Gu, Xiumei Yu, Menggen Ma, Petri Penttinen, Xiaoping Zhang, Min Huang, Lei Deng, Qiang Chen
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0256328

Identifying fungal-host associations in an amphibian host system
Cited by: 4
Author(s): Alexandra Alexiev, Melissa Y. Chen, Valerie J. McKenzie
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.615661

A Model System for Feralizing Laboratory Mice in Large Farmyard-Like Pens
Cited by: 10
Author(s): Henriette Arnesen, Linn Emilie Knutsen, Bente Wabakken Hognestad, G. Johansen, Mats Bemark, Oliver Pabst, Anne K. Storset, Preben Boysen
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2020.00796

Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw Gradient
Cited by: 20
Author(s): Moira Hough, Amelia McClure, Benjamin Bolduc, Ellen Dorrepaal, S. R. Saleska, Vanja Klepac‐Ceraj, V. I. Rich
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2019.00505

Belowground Consequences of Intracontinental Range-Expanding Plants and Related Natives in Novel Environments
Cited by: 4
Author(s): Marta Manrubia, L. Basten Snoek, Carolin Weser, G. F. Veen, Wim H. van der Putten
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0233557

The intestinal virome in children with cystic fibrosis differs from healthy controls
Cited by: 10
Author(s): Michael J. Coffey, Ivan Cherh Chiet Low, Sacha Stelzer-Braid, Bernd Wemheuer, Millie Garg, Torsten Thomas, Adam Jaffé, William D. Rawlinson, Chee Y. Ooi
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0149567

Diverse Effects of a Seven-Year Experimental Grassland Fragmentation on Major Invertebrate Groups
Cited by: 13
Author(s): Brigitte Braschler, Bruno Baur
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2017.01313

Spatial and Temporal Microbial Patterns in a Tropical Macrotidal Estuary Subject to Urbanization
Cited by: 30
Author(s): Mirjam Kaestli, Anna J. Skillington, Karen Kennedy, M. Majid, David Williams, Keith A. McGuinness, Niels C. Munksgaard, Karen S. Gibb
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0235682

Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling
Cited by: 16
Author(s): Sarah J Vancuren, Scott J Dos Santos, Janet E. Hill
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0250874

A mixture of quebracho and chestnut tannins drives butyrate-producing bacteria populations shift in the gut microbiota of weaned piglets
Cited by: 4
Author(s): Francesco Miragoli, Vania Patrone, Aldo Prandini, Samantha Sigolo, Matteo Dell’Anno, Luciana Rossi, Mario Barbato, Alice Senizza, L. Morelli, Maria Luisa Callegari
Software Mentions: 3
Published: over 3 years ago

10.1038/s41398-021-01504-6

Gut microbiota signature in treatment-naïve attention-deficit/hyperactivity disorder
Cited by: 20
Author(s): Vanesa Richarte, Cristina Sánchez-Mora, Montse Corrales, Christian Fadeuilhe, Laura Vilar-Ribó, Lorena Arribas, Estela Camus García, Silvia Karina Rosales-Ortiz, Alejandro Arias-Vásquez, María Soler Artigas, Marta Ribasés, Josep Antoni Ramos‐Quiroga
Software Mentions: 3
Published: over 3 years ago

10.1186/s12876-021-01885-4

Study protocol P-MAPS: microbiome as predictor of severity in acute pancreatitis—a prospective multicentre translational study
Cited by: 2
Author(s): Christoph Ammer‐Herrmenau, Thomas Asendorf, Georg Beyer, S Buchholz, Silke Cameron, Marko Damm, Fabian Frost, Robert Henker, Robert Jaster, Veit Phillip, Marius Placzek, C. Ratei, Simon Sirtl, T. van den Berg, Molly Weingarten, Julia Woitalla, Julia Mayerle, Volker Ellenrieder, Albrecht Neeße
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.570770

Metagenomics Reveals Diet-Specific Specialization of Bacterial Communities in Fungus Gardens of Grass- and Dicot-Cutter Ants
Cited by: 8
Author(s): Lily Khadempour, Huan Fan, Ken Keefover‐Ring, Camila Carlos‐Shanley, Nilson S. Nagamoto, Miranda A. Dam, Mônica Tallarico Pupo, Cameron R. Currie
Software Mentions: 3
Published: about 4 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292