Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.1038/s41598-019-45660-8
A preliminary examination of bacterial, archaeal, and fungal communities inhabiting different rhizocompartments of tomato plants under real-world environments
Cited by: 66
Author(s): Shin Ae Lee, Yiseul Kim, Jeong Myeong Kim, Bora Chu, Jae–Ho Joa, Mee Kyung Sang, Jaekyeong Song, Hang-Yeon Weon
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-45490-8
Seasonal development of a coastal microbial mat
Cited by: 22
Author(s): Daniela Clara Cardoso, Mariana Silvia Cretoiu, Lucas J. Stal, Henk Bolhuis
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.5078
It’s a matter of design—how pitfall trap design affects trap samples and possible predictions
Cited by: 25
Author(s): Fabian A. Boetzl, Elena Ries, Gudrun Schneider, Jochen Krauß
Software Mentions: 3
Published: over 6 years ago
10.3389/fvets.2020.00331
Effects of Housing Types on Cecal Microbiota of Two Different Strains of Laying Hens During the Late Production Phase
Cited by: 9
Author(s): Bishnu Adhikari, Se‐Ran Jun, Young Min Kwon, Aaron S. Kiess, Pratima Adhikari
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0202083
Dietary soybean protein ameliorates high-fat diet-induced obesity by modifying the gut microbiota-dependent biotransformation of bile acids
Cited by: 44
Author(s): Kenji Watanabe, Miki Igarashi, Xuan Li, Akiho Nakatani, Junpei Miyamoto, Yuka Inaba, Asuka Sutou, Tsutomu Saito, Takumi Sato, Nobuhiko Tachibana, Hiroshi Inoue, Ikuo Kimura
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2018.01139
Divergent Responses of the Diazotrophic Microbiome to Elevated CO2 in Two Rice Cultivars
Cited by: 19
Author(s): Yongjie Yu, Jianwei Zhang, Evangelos Petropoulos, Marcos Q Baluja, Chunmao Zhu, Jiang Zhu, Xiangui Lin, Youzhi Feng
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0138557
How Do Landscape Structure, Management and Habitat Quality Drive the Colonization of Habitat Patches by the Dryad Butterfly (Lepidoptera: Satyrinae) in Fragmented Grassland?
Cited by: 15
Author(s): Konrad Kalarus, Piotr Nowicki
Software Mentions: 3
Published: about 9 years ago
10.3389/fmicb.2020.570960
Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization
Cited by: 5
Author(s): Julieta Salgueiro, Lida E. Pimper, Diego Fernando Segura, Fabián Horacio Milla, Romina Russo, Elias Asimakis, Panagiota Stathopoulou, Kostas Bourtzis, Jorge Luis Cladera, George Tsiamis, Silvia Beatriz Lanzavecchia
Software Mentions: 3
Published: about 4 years ago
10.1186/s12866-020-02017-w
Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition
Cited by: 18
Author(s): Ovokeraye H. Oduaran, Fiona B. Tamburini, Venesa Sahibdeen, Ryan Brewster, F. Xavier Gómez‐Olivé, Kathleen Kahn, Shane A. Norris, Stephen Tollman, Rhian Twine, Alisha Wade, Ryan G. Wagner, Stephen Tollman, Ami S. Bhatt, Scott Hazelhurst
Software Mentions: 3
Published: about 4 years ago
10.1038/ismej.2015.53
Marked seasonal variation in the wild mouse gut microbiota
Cited by: 244
Author(s): Corinne F. Maurice, Sarah C. L. Knowles, Joshua Ladau, Katherine S. Pollard, Andy Fenton, Amy B. Pedersen, Peter J. Turnbaugh
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0208018
Profiling mycobacterial communities in pulmonary nontuberculous mycobacterial disease
Cited by: 12
Author(s): Steven Cowman, Phillip James, Robert Wilson, William Cookson, Miriam F. Moffatt, Michael R. Loebinger
Software Mentions: 3
Published: almost 6 years ago
10.3390/md18090437
The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health
Cited by: 11
Author(s): Loredana Stabili, Lucia Rizzo, Lorena Basso, Marinella Marzano, Bruno Fosso, Graziano Pesole, Stefano Piraino
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-77396-1
Evaluating the performance of the Bayesian mixing tool MixSIAR with fatty acid data for quantitative estimation of diet
Cited by: 11
Author(s): Alicia Guerrero, Tracey L. Rogers
Software Mentions: 3
Published: about 4 years ago
10.3390/ani10040707
Body Size and Bite Force of Stray and Feral Cats—Are Bigger or Older Cats Taking the Largest or More Difficult-to-Handle Prey?
Cited by: 19
Author(s): Patricia A. Fleming, Heather M. Crawford, Clare H. Auckland, Michael C. Calver
Software Mentions: 3
Published: over 4 years ago
10.3389/fvets.2016.00002
Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity
Cited by: 204
Author(s): Anne Ballou, Rizwana Ali, Mary Mendoza, J. Christopher Ellis, Hosni M. Hassan, W. J. Croom, Matthew D. Koci
Software Mentions: 3
Published: almost 9 years ago
10.3389/fmicb.2020.574146
Successional Change of the Fungal Microbiome Pine Seedling Roots Inoculated With Tricholoma matsutake
Cited by: 8
Author(s): Ki Hyeong Park, Seung‐Yoon Oh, Shinnam Yoo, Myung Soo Park, Jonathan J. Fong, Young Woon Lim
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-019-44665-7
First report of community dynamics of arbuscular mycorrhizal fungi in radiocesium degradation lands after the Fukushima-Daiichi Nuclear disaster in Japan
Cited by: 11
Author(s): Masao Higo, Dong-Jin Kang, Katsunori Isobe
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.11406
Shiftwork, functional bowel symptoms, and the microbiome
Cited by: 4
Author(s): Ann E. Rogers, Yi‐Juan Hu, Ye Yue, Emily F. Wissel, Robert A. Petit, Simone A. Jarrett, Jennifer Christie, Timothy D. Read
Software Mentions: 3
Published: over 3 years ago
10.3389/fnins.2020.00127
Case-Control Study of the Effects of Gut Microbiota Composition on Neurotransmitter Metabolic Pathways in Children With Attention Deficit Hyperactivity Disorder
Cited by: 56
Author(s): Lin Wan, Wen-Rong Ge, Shan Zhang, Yulin Sun, Bin Wang, Guang Yang
Software Mentions: 3
Published: almost 5 years ago
10.1002/mbo3.1179
Comparative analysis of the intestinal bacterial communities in mud crab<i>Scylla serrata</i>in South India
Cited by: 8
Author(s): Elina Apine, Praveen Rai, Madhu K. Mani, Vikram Subramanian, Indrani Karunasagar, Anna Godhe, Lucy M. Turner
Software Mentions: 3
Published: over 3 years ago
10.1002/mbo3.856
Potential links between wood‐inhabiting and soil fungal communities: Evidence from high‐throughput sequencing
Cited by: 12
Author(s): Witoon Purahong, Katherina A. Pietsch, Helge Bruelheide, Christian Wirth, François Buscot, Tesfaye Wubet
Software Mentions: 3
Published: over 5 years ago
10.1186/s42523-020-00048-2
Seasonal dynamics and starvation impact on the gut microbiome of urochordate ascidian Halocynthia roretzi
Cited by: 13
Author(s): Jiankai Wei, Hongwei Gao, Yang Yang, Haiming Liu, Haiyan Yu, Zigui Chen, Bo Dong
Software Mentions: 3
Published: over 4 years ago
10.3389/fnins.2021.653120
Altered Gut Microbiota in a Fragile X Syndrome Mouse Model
Cited by: 15
Author(s): Francisco Altimiras, José García, Ismael Palacios-García, Michael Hurley, Robert M. J. Deacon, Bernardo González, Patricia Cogram
Software Mentions: 3
Published: over 3 years ago
10.1007/s00248-020-01667-7
Root-Associated Mycobiomes of Common Temperate Plants (Calluna vulgaris and Holcus lanatus) Are Strongly Affected by Winter Climate Conditions
Cited by: 3
Author(s): Mathilde Borg Dahl, Derek Peršoh, Anke Jentsch, Jüergen Kreyling
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmicb.2019.00653
Benthic Diatom Communities in an Alpine River Impacted by Waste Water Treatment Effluents as Revealed Using DNA Metabarcoding
Cited by: 42
Author(s): Teofana Chonova, Rainer Kurmayer, Frédéric Rimet, Jérôme Labanowski, Valentin Vasselon, François Keck, Paul Illmer, Agnès Bouchez
Software Mentions: 3
Published: over 5 years ago
10.1128/mSystems.00635-19
Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs
Cited by: 12
Author(s): Julia M. Gauglitz, James T. Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina S. Carpenter, Kelly C. Weldon, Riya Shah, Amy Parampil, Andrea Fidgett, Austin D. Swafford, Rob Knight, Pieter C. Dorrestein
Software Mentions: 3
Published: over 4 years ago
10.3390/ani11041166
A Moderate Reduction of Dietary Crude Protein Provide Comparable Growth Performance and Improve Metabolism via Changing Intestinal Microbiota in Sushan Nursery Pigs
Cited by: 4
Author(s): Riliang Liu, HE Jian-xin, Jianrong Xu, Weijiang Zheng, Wen Yao
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2018.01745
Gut Microbiota in Tibetan Herdsmen Reflects the Degree of Urbanization
Cited by: 22
Author(s): Huan Li, Tongtong Li, Xiangzhen Li, Guan-Hong Wang, Qiang Lin, Jiapeng Qu
Software Mentions: 3
Published: over 6 years ago
10.7717/peerj.659
The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types
Cited by: 83
Author(s): Jenna M. Lang, Jonathan A. Eisen, Angela M. Zivkovic
Software Mentions: 3
Published: almost 10 years ago
10.1186/s40168-019-0759-6
Compositional homogeneity in the pathobiome of a new, slow-spreading coral disease
Cited by: 31
Author(s): Michael Sweet, Alfred Burian, James E. Fifer, Mark T. Bulling, David R. Elliott, Laurie J. Raymundo
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-019-43796-1
Long-lived Temnothorax ant queens switch from investment in immunity to antioxidant production with age
Cited by: 36
Author(s): Matteo Negroni, Susanne Foitzik, Barbara Feldmeyer
Software Mentions: 3
Published: over 5 years ago
10.1186/s40168-018-0559-4
Daylight exposure modulates bacterial communities associated with household dust
Cited by: 55
Author(s): Ashkaan K. Fahimipour, Erica M. Hartmann, Andrew Siemens, Jeff Kline, David A. Levin, Hannah Wilson, Clarisse M. Betancourt‐Román, Glen Brown, Mark Fretz, Dale Northcutt, Kyla Siemens, Curtis Huttenhower, Jessica L. Green, Kevin Van Den Wymelenberg
Software Mentions: 3
Published: about 6 years ago
10.1186/s40168-016-0170-5
Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children
Cited by: 30
Author(s): Marcos Pérez‐Losada, Keith A. Crandall, Robert J. Freishtat
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2017.00975
A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization
Cited by: 73
Author(s): Wayne Dawson, Jens Hör, Markus Egert, Mark van Kleunen, Michael Pester
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-019-43603-x
Karst dolines provide diverse microhabitats for different functional groups in multiple phyla
Cited by: 33
Author(s): Zoltán Bátori, András Vojtkó, István Maák, Gábor Lőrinczi, Tünde Farkas, Noémi Kántor, Eszter Tanács, Péter János Kiss, Orsolya Juhász, Gábor Módra, Csaba Tölgyesi, László Erdös, Dianne Joy Aguilon, Gunnar Keppel
Software Mentions: 3
Published: over 5 years ago
10.3389/fneur.2019.00727
A Systematic Review of the Microbiome in Children With Neurodevelopmental Disorders
Cited by: 23
Author(s): Eleonora Lacorte, Giuseppe Gervasi, Ilaria Bacigalupo, Nicola Vanacore, Umberto Raucci, Pasquale Parisi
Software Mentions: 3
Published: over 5 years ago
10.1186/s12866-018-1367-5
Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study
Cited by: 13
Author(s): Martin Steen Mortensen, Bo Jensen, Jeanne V.A. Williams, Asker Brejnrod, Lee O’Brien Andersen, Dennis Röser, Bente Utoft Andreassen, Andreas Munk Petersen, Christen Rune Stensvold, Søren J. Sørensen, Karen A. Krogfelt
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-018-32529-5
Community Structure, Dynamics and Interactions of Bacteria, Archaea and Fungi in Subtropical Coastal Wetland Sediments
Cited by: 60
Author(s): Man Kit Cheung, Carmen Wong, Ka Hou Chu, Hoi Shan Kwan
Software Mentions: 3
Published: about 6 years ago
10.3390/md17100578
Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths
Cited by: 10
Author(s): Anak Agung Gede Indraningrat, Sebastian Micheller, Mandy Runderkamp, Ina Sauerland, Leontine E. Becking, Hauke Smidt, Detmer Sipkema
Software Mentions: 3
Published: about 5 years ago
10.1111/eva.12658
Structural and compositional mismatch between captive and wild Atlantic salmon (<i>Salmo salar</i>) parrs’ gut microbiota highlights the relevance of integrating molecular ecology for management and conservation methods
Cited by: 30
Author(s): Camille Lavoie, Maxime Courcelle, Baptise Redivo, Nicolas Derôme
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2018.03283
Seaweed Loads Cause Stronger Bacterial Community Shifts in Coastal Lagoon Sediments Than Nutrient Loads
Cited by: 21
Author(s): Tânia Aires, Gerard Muyzer, Ester A. Serrão, Aschwin H. Engelen
Software Mentions: 3
Published: almost 6 years ago
10.12688/f1000research.9227.2
NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes
Cited by: 86
Author(s): Javier Ramiro-García, Gerben D. A. Hermes, Christos Giatsis, Detmer Sipkema, Erwin G. Zoetendal, Peter J. Schaap, Hauke Smidt
Software Mentions: 3
Published: about 6 years ago
10.12688/f1000research.27502.2
Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
Cited by: 2
Author(s): Hugo Maruyama, Ayako Masago, Takayuki Nambu, Chiho Mashimo, Kazuya Takahashi, Toshinori Okinaga
Software Mentions: 3
Published: over 3 years ago
10.1186/s40168-018-0561-x
The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales
Cited by: 118
Author(s): Hongyi Li, Hang Wang, Hai-Tiao Wang, Peiyong Xin, Xinhua Xu, Yi Ma, Weiping Liu, Chang-Yun Teng, Cheng-Liang Jiang, Liping Lou, Wyatt Arnold, Lauren Cralle, Yan Zhu, Jinfang Chu, Jack A. Gilbert, Zhijian Zhang
Software Mentions: 3
Published: about 6 years ago
10.1186/s13568-019-0765-x
Responses of phyllosphere microbiota and plant health to application of two different biocontrol agents
Cited by: 38
Author(s): Chong Qin, Jiemeng Tao, Tianbo Liu, Yongjun Liu, Nengwen Xiao, Tianming Li, Yanling Gu, Huaqun Yin, Delong Meng
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-021-82570-0
The acidified drinking water-induced changes in the behavior and gut microbiota of wild-type mice depend on the acidification mode
Cited by: 13
Author(s): Brandon Whipple, Jennifer Agar, Jing Zhao, David A. Pearce, Attila Kovács
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-018-37356-2
Behavioural and pathomorphological impacts of flash photography on benthic fishes
Cited by: 4
Author(s): Maarten De Brauwer, Luke Gordon, Tanika C. Shalders, Benjamin J. Saunders, Michael A. Archer, Euan S. Harvey, Shaun P. Collin, Julian C. Partridge, Jennifer L. McIlwain
Software Mentions: 3
Published: almost 6 years ago
10.1186/s40168-018-0528-y
Factors shaping the gut bacterial community assembly in two main Colombian malaria vectors
Cited by: 66
Author(s): Priscila Bascuñán, Juan Pablo Niño-García, Yadira Galeano-Castañeda, David Serre, Margarita M. Correa
Software Mentions: 3
Published: over 6 years ago
10.7717/peerj.1435
Biogeographic variation in the microbiome of the ecologically important sponge,<i>Carteriospongia foliascens</i>
Cited by: 41
Author(s): Heidi M. Luter, Stefanie Widder, Emmanuelle S. Botté, Muhammad Abdul Wahab, Steve W Whalan, Lucas Moitinho‐Silva, Torsten Thomas, Nicole S. Webster
Software Mentions: 3
Published: almost 9 years ago
10.1126/sciadv.aba2578
Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children
Cited by: 150
Author(s): Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Noora Nurminen, Sami Oikarinen, Ahmad Mahfuz Gazali, Ondřej Cinek, Lenka Kramná, Nathan Siter, Heli K. Vari, Laura Soininen, Nan Hui, Juho Rajaniemi, Tuure Kinnunen, Olli H. Laitinen, Heikki Hyöty, Aki Sinkkonen
Software Mentions: 3
Published: about 4 years ago
10.1264/jsme2.ME17163
Diarrhea-Associated Intestinal Microbiota in Captive Sichuan Golden Snub-Nosed Monkeys (&lt;i&gt;Rhinopithecus roxellana&lt;/i&gt;)
Cited by: 13
Author(s): Hongxiang Zhu, Dong Zeng, Qiang Wang, Ning Wang, Bo Zeng, Lili Niu, Xueqin Ni
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0189796
A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing
Cited by: 5
Author(s): Ryoko Oono
Software Mentions: 3
Published: almost 7 years ago
10.1128/mSystems.00137-21
Metagenome-Wide Analysis of Rural and Urban Surface Waters and Sediments in Bangladesh Identifies Human Waste as a Driver of Antibiotic Resistance
Cited by: 10
Author(s): Ross Stuart McInnes, Hassan Uz-Zaman, Imam Taskin Alam, Siu Fung Stanley Ho, Robert A. Moran, John D. Clemens, Soriful Islam, Willem van Schaik
Software Mentions: 3
Published: about 3 years ago
10.3390/ani11010084
A Single Dose of Synbiotics and Vitamins at Birth Affects Piglet Microbiota before Weaning and Modifies Post-Weaning Performance
Cited by: 5
Author(s): Marion Girard, M. Tretola, Giuseppe Bee
Software Mentions: 3
Published: almost 4 years ago
10.1002/advs.202100536
Decreased Abundance of <i>Akkermansia muciniphila</i> Leads to the Impairment of Insulin Secretion and Glucose Homeostasis in Lean Type 2 Diabetes
Cited by: 63
Author(s): Jing Zhang, Yueqiong Ni, Lingling Qian, Qichen Fang, Tingting Zheng, Mingliang Zhang, Qiongmei Gao, Ying Zhang, Jingwei Ni, Xuhong Hou, Yuqian Bao, Petia Kovatcheva‐Datchary, Aimin Xu, Huating Li, Gianni Panagiotou, Weiping Jia
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.3689
Diversity of compounds in femoral secretions of Galápagos iguanas (genera:<i>Amblyrhynchus</i>and<i>Conolophus</i>), and their potential role in sexual communication in lek-mating marine iguanas (<i>Amblyrhynchus cristatus</i>)
Cited by: 10
Author(s): Alejandro Ibáñez, Markus Menke, Galo Quezada, Gustavo Jiménez-Uzcátegui, Stefan Schulz, Sebastian Steinfartz
Software Mentions: 3
Published: over 7 years ago
10.1186/s12931-020-01367-3
Differences in airway microbiome and metabolome of single lung transplant recipients
Cited by: 17
Author(s): Nirmal Sharma, Grant Vestal, Keith Wille, Kapil Patel, Feng Cheng, Srinivas M. Tipparaju, Sultan Tousif, Mudassir M Banday, Xin Xu, Landon Wilson, Viswam S. Nair, Casey D. Morrow, Don Hayes, Andreas Seyfang, Stephen Barnes, Jessy Deshane, Amit Gaggar
Software Mentions: 3
Published: over 4 years ago
10.1093/femsec/fiaa163
Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure
Cited by: 19
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Ôlav Vadstein, Madeleine S. Gundersen, Ingrid Bakke
Software Mentions: 3
Published: over 4 years ago
10.1186/s12931-019-1080-4
Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study
Cited by: 29
Author(s): Alexa A. Pragman, Katherine A. Knutson, Trevor Gould, Richard E. Isaacson, Cavan Reilly, Christine Wendt
Software Mentions: 3
Published: over 5 years ago
10.1007/s11356-018-3765-5
Inter-species and inter-colony differences in elemental concentrations in eggshells of sympatrically nesting great cormorants Phalacrocorax carbo and grey herons Ardea cinerea
Cited by: 2
Author(s): Dariusz Jakubas, Ignacy Kitowski, Dariusz Wiącek, Szymon Bzoma
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-020-80732-0
Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
Cited by: 11
Author(s): Toke Bang‐Andreasen, Mette Peltre, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen, Morten Ingerslev, Regin Rønn, Carsten Suhr Jacobsen, Rasmus Kjøller
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-021-87623-y
Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus
Cited by: 11
Author(s): Coralea Stephanou, Michalis Omirou, Laurent Philippot, Andreas M. Zissimos, Irene C. Christoforou, Slave Trajanoski, Anastasis Oulas, Ioannis M. Ioannides
Software Mentions: 3
Published: over 3 years ago
10.1186/s40168-019-0770-y
Niche differentiation rather than biogeography shapes the diversity and composition of microbiome of Cycas panzhihuaensis
Cited by: 66
Author(s): Ying Zheng, Xun Gong
Software Mentions: 3
Published: almost 5 years ago
10.1186/s40168-018-0450-3
Similarity of the dog and human gut microbiomes in gene content and response to diet
Cited by: 185
Author(s): Luís Pedro Coelho, Jens Roat Kultima, Paul Igor Costea, Coralie Fournier, Yuanlong Pan, Gail L. Czarnecki-Maulden, Matthew R. Hayward, Kristoffer Forslund, Thomas Sebastian Benedikt Schmidt, Patrick Descombes, Janet R. Jackson, Qinghong Li, Peer Bork
Software Mentions: 3
Published: over 6 years ago
10.1093/femsec/fiaa082
Vegetation type determines spore deposition within a forest–agricultural mosaic landscape
Cited by: 19
Author(s): Miguel Á. Redondo, Anna Berlin, Johanna Boberg, Jonàs Oliva
Software Mentions: 3
Published: over 4 years ago
10.1007/s00265-017-2398-x
Does similarity in call structure or foraging ecology explain interspecific information transfer in wild Myotis bats?
Cited by: 20
Author(s): Theresa Hügel, Vincent Van Meir, Amanda Munoz-Meneses, B.-Markus Clarin, Björn Martin Siemers, Holger R. Goerlitz
Software Mentions: 3
Published: about 7 years ago
10.18632/aging.103108
Microbiome succession with increasing age in three oral sites
Cited by: 14
Author(s): Shili Liu, Yihua Wang, Le Zhao, Xiaoyuan Sun, Qiang Feng
Software Mentions: 3
Published: over 4 years ago
10.1186/s40793-019-0347-1
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
Cited by: 58
Author(s): Hyun S. Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, René Niehus, Alasdair T. M. Hubbard, Michael J. Bowes, Mark Bailey, Tim Peto, Sarah Hoosdally, A Sarah Walker, Robert Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser
Software Mentions: 3
Published: about 5 years ago
10.1186/s40168-020-00976-w
High-dose saccharin supplementation does not induce gut microbiota changes or glucose intolerance in healthy humans and mice
Cited by: 32
Author(s): Joan Serrano, Kathleen R. Smith, Audra L. Crouch, Vandana Sharma, Fanchao Yi, Veronika Vargova, Traci E. LaMoia, Lydia M. Dupont, Vanida A. Serna, Fang Tang, Laisa Gomes-Dias, Joshua J. Blakeslee, Emmanuel Hatzakis, Scott N. Peterson, Matthew Anderson, Richard E. Pratley, George A. Kyriazis
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12931-018-0835-7
Decreased microbiome diversity in the HIV small airway epithelium
Cited by: 16
Author(s): Stella Xu, Amy S. Tsai, Marc A. Sze, Emily A. Vucic, Tawimas Shaipanich, Marianne Harris, Silvia Guillemi, Julia Yang, Sunita Sinha, Corey Nislow, Julio S. G. Montaner, Wan L. Lam, Stephen Lam, Don D. Sin, S. F. Paul Man, Janice M. Leung
Software Mentions: 3
Published: over 6 years ago
10.1186/s40793-021-00383-0
Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum development
Cited by: 17
Author(s): Yukun Gao, Jianghui Cui, Ge Ren, Wei Shilin, Yang Puyuan, Congpei Yin, Liang Hongkai, Chang Jin-hua
Software Mentions: 3
Published: over 3 years ago
10.1186/s12917-020-02688-7
Transition of microbiota in chicken cecal droppings from commercial broiler farms
Cited by: 10
Author(s): Nachiko Takeshita, Takayasu Watanabe, Kasumi Ishida-Kuroki, Tsutomu Sekizaki
Software Mentions: 3
Published: almost 4 years ago
10.1264/jsme2.ME19064
Distinct Community Composition of Previously Uncharacterized Denitrifying Bacteria and Fungi across Different Land-Use Types
Cited by: 10
Author(s): Reiko Fujimura, Yoichi Azegami, Wei Wei, Hiroko Kakuta, Yutaka Shiratori, Nobuhito Ohte, Keishi Senoo, Shigeto Otsuka, Kazuo Isobe
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41396-021-00906-0
Soil microbial diversity–biomass relationships are driven by soil carbon content across global biomes
Cited by: 137
Author(s): Felipe Bastida, David J. Eldridge, Carlos Garcı́a, G. Kenny Png, Richard D. Bardgett, Manuel Delgado‐Baquerizo
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.marenvres.2020.104968
Meiofauna improve oxygenation and accelerate sulfide removal in the seasonally hypoxic seabed
Cited by: 15
Author(s): Stefano Bonaglia, Johanna Hedberg, Ugo Marzocchi, Sven Iburg, Ronnie N. Glud, Francisco J. A. Nascimento
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2021.605285
Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species
Cited by: 10
Author(s): Rachael Storo, Cole G. Easson, Mahmood S. Shivji, Jose V. Lopez
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmolb.2020.590018
Metagenomic Analysis Reveals the Distribution of Antibiotic Resistance Genes in a Large-Scale Population of Healthy Individuals and Patients With Varied Diseases
Cited by: 13
Author(s): Qinwei Qiu, Jingjing Wang, Yuhong Yan, Bhaskar Roy, Chen Yang, Xuan Shang, Tingfeng Dou, Lijuan Han
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-019-42862-y
A longitudinal characterization of the Non-Cystic Fibrosis Bronchiectasis airway microbiome
Cited by: 29
Author(s): Taylor E Woo, Rachel Lim, Alya Heirali, Nicole Acosta, Harvey Rabin, Christopher H. Mody, Ranjani Somayaji, Michael G. Surette, Christopher D. Sibley, Douglas G. Storey, Michael D. Parkins
Software Mentions: 3
Published: over 5 years ago
10.1093/femsec/fiab022
Soil depth matters: shift in composition and inter-kingdom co-occurrence patterns of microorganisms in forest soils
Cited by: 39
Author(s): Sunil Mundra, O. Janne Kjønaas, Luis Morgado, Anders K. Krabberød, Yngvild Ransedokken, Håvard Kauserud
Software Mentions: 3
Published: almost 4 years ago
10.1128/mSystems.00629-19
Intranasal Bacterial Therapeutics Reduce Colonization by the Respiratory Pathogen Mannheimia haemolytica in Dairy Calves
Cited by: 32
Author(s): Samat Amat, Trevor W. Alexander, Devin B. Holman, Timothy Schwinghamer, Edouard Timsit
Software Mentions: 3
Published: over 4 years ago
10.1264/jsme2.ME19110
Distribution of the Harmful Bloom-Forming Cyanobacterium, &lt;i&gt;Microcystis aeruginosa&lt;/i&gt;, in 88 Freshwater Environments across Japan
Cited by: 6
Author(s): Takafumi Kataoka, Kako Ohbayashi, Yuki Kobayashi, Hiroyuki Takasu, Susumu Nakano, Ryou Kondo, Yoshikuni Hodoki
Software Mentions: 3
Published: almost 5 years ago
10.1093/femsec/fix117
Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control
Cited by: 25
Author(s): Johanna Mayerhofer, Sonja Eckard, Martin Hartmann, Giselher Grabenweger, Franco Widmer, Adrian Leuchtmann, Jürg Enkerli
Software Mentions: 3
Published: about 7 years ago
10.1111/1462-2920.14882
Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen
Cited by: 33
Author(s): S. Emilia Hannula, Hui Ma, Juan E. Pérez‐Jaramillo, Ana Pineda, T. Martijn Bezemer
Software Mentions: 3
Published: almost 5 years ago
10.3390/antibiotics9020055
A 28 Day Clinical Assessment of a Lactic Acid-containing Antimicrobial Intimate Gel Wash Formulation on Skin Tolerance and Impact on the Vulvar Microbiome
Cited by: 11
Author(s): Elizabeth Bruning, Ying Chen, Karen McCue, Joseph R. Rubino, Jeremy E. Wilkinson, Alan D. Brown
Software Mentions: 3
Published: almost 5 years ago
10.1016/j.foodhyd.2019.06.006
Changes in stool frequency following chicory inulin consumption, and effects on stool consistency, quality of life and composition of gut microbiota
Cited by: 31
Author(s): Anthony Watson, David Houghton, Peter Avery, Christopher J. Stewart, Elaine E. Vaughan, P Meyer, Minse J.J. de Bos Kuil, P.J.M. Weijs, Kirsten Brandt
Software Mentions: 3
Published: about 5 years ago
10.3390/antibiotics10080926
Protective Effect of Baicalin against Clostridioides difficile Infection in Mice
Cited by: 4
Author(s): Abraham Joseph Pellissery, Poonam Gopika Vinayamohan, Deepa Kuttappan, Neha Mishra, B. O. Fragomeni, Kendra Maas, Shankumar Mooyottu, Kumar Venkitanarayanan
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2016.00701
Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium
Cited by: 102
Author(s): Joshua C McCann, Shaoyu Luan, F.C. Cardoso, Hooman Derakhshani, Ehsan Khafipour, Juan J. Loor
Software Mentions: 3
Published: over 8 years ago
10.3390/ani11082283
Changes in the Fecal Microbiota Associated with a Broad-Spectrum Antimicrobial Administration in Hospitalized Neonatal Foals with Probiotics Supplementation
Cited by: 2
Author(s): Francesca Freccero, Aliai Lanci, Jole Mariella, Elisa Viciani, Sara Quercia, Andréa Castagnetti, Carolina Castagnetti
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0226833
Effects of Allium hookeri on gut microbiome related to growth performance in young broiler chickens
Cited by: 15
Author(s): Sung-Hyen Lee, Sohyun Bang, Hyejeong Jang, Eun-Byeol Lee, Bong-Sang Kim, Seung-Hwan Kim, Sang-Hyun Kang, Kyung-Woo Lee, Dong-Wook Kim, Jung-Bong Kim, Jeong‐Sook Choe, Shin-Young Park, Hyun S. Lillehoj
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0127925
Rapid Recovery of an Urban Remnant Reptile Community following Summer Wildfire
Cited by: 23
Author(s): Robert A. Davis, Tim S. Doherty
Software Mentions: 3
Published: over 9 years ago
10.1186/s40168-019-0735-1
Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm
Cited by: 34
Author(s): Suraj Gupta, Gustavo Arango-Argoty, Liqing Zhang, Amy Pruden, Peter J. Vikesland
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2021.645070
Gut Microbial Composition and Diversity in Four Ophiuroid Species: Divergence Between Suspension Feeder and Scavenger and Their Symbiotic Microbes
Cited by: 4
Author(s): Yue Dong, Yixuan Li, Pinjing He, Zongling Wang, Shiliang Fan, Zhixin Zhang, Xuelei Zhang, Qinzeng Xu
Software Mentions: 3
Published: over 3 years ago
10.1186/s40168-019-0753-z
The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
Cited by: 20
Author(s): Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David Jayne, Andreas Kronbichler
Software Mentions: 3
Published: about 5 years ago
10.1111/1462-2920.15232
Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment
Cited by: 14
Author(s): Maria Pinto, Paula Polania Zenner, Teresa M. Langer, Jesse Patrick Harrison, Meinhard Simon, Marta M. Varela, Gerhard J. Herndl
Software Mentions: 3
Published: about 4 years ago
10.1186/s40168-020-00921-x
Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae)
Cited by: 21
Author(s): Joel J. Brown, Sonia M. Rodríguez‐Ruano, Anbu Poosakkannu, Giampiero Batani, Justin O. Schmidt, Walter Roachell, Jan Zima, Václav Hypša, Eva Nováková
Software Mentions: 3
Published: about 4 years ago
10.3390/foods10020362
Characterization of Bacterial Communities of Cold-Smoked Salmon during Storage
Cited by: 16
Author(s): Aurélien Maillet, Pauline Denojean, Agnès Bouju-Albert, Erwan Scaon, Sébastien Leuillet, Xavier Dousset, Emmanuel Jaffrès, Jérôme Combrisson, Hervé Prévost
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmicb.2016.00426
The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis
Cited by: 42
Author(s): Hooman Derakhshani, Jeroen De Buck, Rienske A.R. Mortier, Herman W. Barkema, Denis O. Krause, Ehsan Khafipour
Software Mentions: 3
Published: over 8 years ago
10.1111/1462-2920.14043
Genomic insights into the <i>Acidobacteria</i> reveal strategies for their success in terrestrial environments
Cited by: 197
Author(s): Stephanie A. Eichorst, Daniela Trojan, Simon Roux, Craig W. Herbold, Thomas Rattei, Dagmar Woebken
Software Mentions: 3
Published: over 6 years ago
10.3390/foods10092040
Impact of Plant-Based Meat Alternatives on the Gut Microbiota of Consumers: A Real-World Study
Cited by: 36
Author(s): Miguel Toribio-Mateas, Adri Bester, Natalia Klimenko
Software Mentions: 3
Published: about 3 years ago
10.1111/1462-2920.14913
Extremely halophilic archaeal communities are resilient to short‐term entombment in halite
Cited by: 12
Author(s): Tom J. C. Huby, Dave R. Clark, Boyd A. McKew, Terry J. McGenity
Software Mentions: 3
Published: almost 5 years ago