cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3390/nu12041063

Specific Dietary Components and Gut Microbiota Composition are Associated with Obesity in Children and Adolescents with Prader–Willi Syndrome
Cited by: 16
Author(s): Sonika Garcia-Ribera, Montse Amat-Bou, Eric Climent, M. Villangómez Llobet, Empar Chenoll, Raquel Corripio, Lourdes Ibáñez, Marta Ramón-Krauel, Carles Lerín
Software Mentions: 4
Published: over 4 years ago

10.3390/nu12113450

Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months
Cited by: 7
Author(s): Natalie Shenker, Alvaro Perdones‐Montero, Adam Burke, Sarah Stickland, Julie A. K. McDonald, Kate Alexander-Hardiman, James M. Flanagan, Zoltan Takáts, Simon Cameron
Software Mentions: 4
Published: about 4 years ago

10.3390/nu11061390

Influence of Socio-Economic and Psychosocial Profiles on the Human Breast Milk Bacteriome of South African Women
Cited by: 14
Author(s): Anna Ojo-Okunola, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Sugnet Gardner-Lubbe, Dan J. Stein, Heather J. Zar, Mark P. Nicol, Elloise du Toit
Software Mentions: 4
Published: over 5 years ago

10.3390/nu12051257

Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota—Results from the PAGODA Trial
Cited by: 35
Author(s): Simon Reider, Simon Moosmang, J Tragust, Lovro Trgovec-Greif, Simon Tragust, Lorenz Perschy, Nicole Przysiecki, Sonja Sturm, Herbert Tilg, Hermann Stuppner, Thomas Rattei, Alexander R. Moschen
Software Mentions: 4
Published: over 4 years ago

10.3390/nu12102938

Diet Quality, Food Groups and Nutrients Associated with the Gut Microbiota in a Nonwestern Population
Cited by: 17
Author(s): Ángela S García-Vega, Vanessa Corrales-Agudelo, Alejandro Reyes, Juan S. Escobar
Software Mentions: 4
Published: about 4 years ago

10.3390/nu12113557

High Fat-High Fructose Diet-Induced Changes in the Gut Microbiota Associated with Dyslipidemia in Syrian Hamsters
Cited by: 29
Author(s): Rachael Horne, Yifan Yu, Rianna Zhang, Nyan Abdalqadir, Laura Rossi, Michael G. Surette, Philip M. Sherman, Khosrow Adeli
Software Mentions: 4
Published: about 4 years ago

10.7554/eLife.05224

Social networks predict gut microbiome composition in wild baboons
Cited by: 384
Author(s): Jenny Tung, Luis B. Barreiro, Michael B. Burns, Jean Grenier, Joshua Lynch, Laura Grieneisen, Jeanne Altmann, Susan C. Alberts, Ran Blekhman, Elizabeth A. Archie
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-61817-2

Blood meal sources and bacterial microbiome diversity in wild-caught tsetse flies
Cited by: 21
Author(s): Alex Kiarie Gaithuma, Junya Yamagishi, Kyoko Hayashida, Nobuyoshi Kawai, Boniface Namangala, Chihiro Sugimoto
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-62308-0

Hippocampal mitochondrial dysfunction and psychiatric-relevant behavioral deficits in spinocerebellar ataxia 1 mouse model
Cited by: 18
Author(s): Filip Tichánek, Martina Šalomová, Jan Jedlička, Jitka Kuncová, Pavel Pitule, Tereza Macanova, Zuzana Petrankova, Zdeněk Tůma, Jan Cendelín
Software Mentions: 4
Published: over 4 years ago

10.1038/s41396-019-0374-3

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
Cited by: 55
Author(s): Keith Bouma‐Gregson, Matthew R. Olm, Alexander J. Probst, Karthik Anantharaman, Mary E. Power, Jillian F. Banfield
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.36741

Convergence between the microcosms of Southeast Asian and North American pitcher plants
Cited by: 26
Author(s): Leonora S. Bittleston, Charles J. Wolock, Bakhtiar Effendi Yahya, Xin Yue Chan, Kok Gan Chan, Naomi E. Pierce, Anne Pringle
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.54792

Gut Helicobacter presentation by multiple dendritic cell subsets enables context-specific regulatory T cell generation
Cited by: 18
Author(s): Emilie V. Russler-Germain, Jaeu Yi, Shannon Young, Katherine Nutsch, Ho-Lun Wong, Teresa L. Ai, Jiani N. Chai, Vivek Durai, Daniel H. Kaplan, Ronald N. Germain, Kenneth M. Murphy, Chyi-Song Hsieh
Software Mentions: 4
Published: almost 4 years ago

10.1084/jem.20201793

A positive feedback loop reinforces the allergic immune response in human peanut allergy
Cited by: 10
Author(s): Xiaoying Zhou, Wei Yu, Shu‐Chen Lyu, Claudia Macaubas, Bryan Bunning, Ziyuan He, Elizabeth Mellins, Kari Nadeau
Software Mentions: 4
Published: over 3 years ago

10.3390/jof7030194

The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense
Cited by: 23
Author(s): Carmen Gómez-Lama Cabanás, Antonio José Fernández-González, Martina Cardoni, Antonio Valverde-Corredor, Javier López-Cepero Borrego, Manuel Fernández‐López, Jesús Mercado‐Blanco
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-019-54855-y

Microbiome differences in disease-resistant vs. susceptible Acropora corals subjected to disease challenge assays
Cited by: 51
Author(s): Stephanie M. Rosales, Margaret W. Miller, Dana E. Williams, Nikki Traylor-Knowles, Benjamin Young, Xaymara M. Serrano
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.35987

Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut
Cited by: 104
Author(s): Aspen T. Reese, Eugenia H. Cho, Bruce Klitzman, Scott P. Nichols, Natalie A. Wisniewski, Max M. Villa, Heather K. Durand, Sharon Jiang, Firas S Midani, Sai N Nimmagadda, Thomas M. O’Connell, Justin P. Wright, Marc A. Deshusses, Lawrence A. David
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-55978-y

Rumen Bacteria and Serum Metabolites Predictive of Feed Efficiency Phenotypes in Beef Cattle
Cited by: 30
Author(s): Brooke A. Clemmons, Cameron Martino, Joshua B. Powers, Shawn R. Campagna, Brynn H. Voy, Dallas R. Donohoe, James Gaffney, Mallory Embree, Phillip R. Myer
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-56631-4

Helicobacter pylori infection associates with fecal microbiota composition and diversity
Cited by: 41
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Corinna Bang, André Franke, Kathrin Zimmermann, Matthias Nauck, Uwe Völker, Henry Völzke, Reiner Biffar, Christian Schulz, Julia Mayerle, Frank Ulrich Weiss, Georg Homuth, Markus M. Lerch
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.67740

Bacterial–fungal interactions in the neonatal gut influence asthma outcomes later in life
Cited by: 16
Author(s): Rozlyn C.T. Boutin, Charisse Petersen, Sarah E. Woodward, Antonio Serapio-Palacios, Tahereh Bozorgmehr, Rachelle Loo, Alina Chalanuchpong, Mihai Cirstea, Bernard C. Lo, Kelsey E. Huus, Weronika Barcik, Meghan B. Azad, Allan B. Becker, Piush J. Mandhane, Theo J. Moraes, Malcolm R. Sears, Padmaja Subbarao, Kelly M. McNagny, Stuart E. Turvey, B. Brett Finlay
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.67481

SORBS2 is a genetic factor contributing to cardiac malformation of 4q deletion syndrome patients
Cited by: 7
Author(s): Fei Liang, Bo Wang, Juan Geng, Guoling You, Jingjing Fa, Min Zhang, Hunying Sun, Huiwen Chen, Qin Fu, Xiaoqing Zhang, Zhen Zhang
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.32581

Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids
Cited by: 14
Author(s): Sara C. Di Rienzi, Juliet Jacobson, Elizabeth A. Kennedy, Michael Bell, Qiaojuan Shi, Jillian L. Waters, Peter Lawrence, J. Thomas Brenna, Robert A. Britton, Jens Walter, Ruth E. Ley
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.60197

Effects of domestication on the gut microbiota parallel those of human industrialization
Cited by: 37
Author(s): Aspen T. Reese, Katia S. Chadaideh, Caroline E. Diggins, Laura D. Schell, Mark Beckel, Peggy Callahan, Roberta Ryan, Melissa Emery Thompson, Rachel N. Carmody
Software Mentions: 4
Published: over 3 years ago

10.1007/s00442-021-04971-2

Geographic patterns of seed trait variation in an invasive species: how much can close populations differ?
Cited by: 2
Author(s): Erola Fenollosa, Laia Jené, Sergi Munné‐Bosch
Software Mentions: 4
Published: over 3 years ago

10.1007/s00442-020-04797-4

Plant invasion impacts on fungal community structure and function depend on soil warming and nitrogen enrichment
Cited by: 21
Author(s): Mark Anthony, Kristina A. Stinson, Jessica A. M. Moore, Serita D. Frey
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-59016-0

Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study
Cited by: 71
Author(s): Zachary M. Burcham, Nicole L. Garneau, Sarah S. Comstock, Robin M. Tucker, Rob Knight, Jessica L. Metcalf
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-49829-z

Adenovirus infection is associated with altered gut microbial communities in a non-human primate
Cited by: 27
Author(s): . Wasimuddin, Victor M. Corman, Jörg U. Ganzhorn, Jacques Rakotondranary, Yedidya R. Ratovonamana, Christian Drosten, Simone Sommer
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-59210-0

Species-specific genetic variation in response to deep-sea environmental variation amongst Vulnerable Marine Ecosystem indicator taxa
Cited by: 16
Author(s): Cong Zeng, Ashley A. Rowden, Malcolm R. Clark, Jonathan P. A. Gardner
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-59620-0

Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms
Cited by: 5
Author(s): Takashi Shirouzu, Shiro Matsuoka, Hideyuki Doi, Nobuaki Nagata, Masayuki Ushio, Kentaro Hosaka
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijerph18126348

Tannery Wastewater Recalcitrant Compounds Foster the Selection of Fungi in Non-Sterile Conditions: A Pilot Scale Long-Term Test
Cited by: 4
Author(s): Francesco Spennati, Salvatore La China, G. Siracusa, Simona Di Gregorio, A. Bardi, Valeria Tigini, Greg Mori, David Gabriel, Giulio Munz
Software Mentions: 4
Published: over 3 years ago

10.3390/ijerph18073742

Do Rural Second Homes Shape Commensal Microbiota of Urban Dwellers? A Pilot Study among Urban Elderly in Finland
Cited by: 4
Author(s): Mika Saarenpää, Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Nan Hui, Noora Nurminen, Olli H. Laitinen, Heikki Hyöty, Ondřej Cinek, Aki Sinkkonen
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-60304-y

Tendentious effects of automated and manual metagenomic DNA purification protocols on broiler gut microbiome taxonomic profiling
Cited by: 15
Author(s): Gábor Fidler, Emese Tolnai, Anikó Stágel, Judit Remenyik, László Stündl, Ferenc Gál, Sándor Bíró, Melinda Paholcsek
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.61562

Molecular evidence of hybridization between pig and human Ascaris indicates an interbred species complex infecting humans
Cited by: 40
Author(s): Alice V. Easton, Shenghan Gao, Scott P Lawton, Sasisekhar Bennuru, Asis Khan, Eric Dahlstrom, Rita G. Oliveira, Stella Kepha, Stephen F. Porcella, Joanne P. Webster, Roy M. Anderson, Michael E. Grigg, Richard E. Davis, Jianbin Wang, Thomas B. Nutman
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-019-51912-4

Pollinator foraging flexibility mediates rapid plant-pollinator network restoration in semi-natural grasslands
Cited by: 13
Author(s): Norbertas Noreika, Ignasi Bartomeus, Marie Winsa, Riccardo Bommarco, Erik Öckinger
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-61092-1

Tuning up microbiome analysis to monitor WWTPs’ biological reactors functioning
Cited by: 35
Author(s): Miguel de Celis, Ignacio Belda, Rüdiger Ortiz‐Álvarez, Lucía Arregui, Domingo Marquina, Susana Serrano, Andrés de la Oliva Santos
Software Mentions: 4
Published: over 4 years ago

10.3390/ijerph18010030

Crop Diversity at the Landscape Level Affects the Composition and Structure of the Vegetation-Dwelling Arthropod Communities in Naked Oat (Avena Chinensis) Fields
Cited by: 7
Author(s): Huan Zhao, Jiahuan Li, Lizhu Guo, Kun Wang
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijerph16111919

Effects of Small Gaps on the Relationship Among Soil Properties, Topography, and Plant Species in Subtropical Rhododendron Secondary Forest, Southwest China
Cited by: 7
Author(s): Fenghua Tang, Wenxuan Quan, Chaochan Li, Xianfei Huang, Xianliang Wu, Qiaoan Yang, Yannan Pan, Tayan Xu, Chenyu Qian, Yunbing Gu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41396-021-00897-y

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
Cited by: 79
Author(s): Christian Santos‐Medellín, Laura Zinke, Anneliek M. ter Horst, Danielle L. Gelardi, Sanjai J. Parikh, Joanne B. Emerson
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-49452-y

Defining Dysbiosis for a Cluster of Chronic Diseases
Cited by: 182
Author(s): Lamont Wilkins, Manoj Monga, Aaron W. Miller
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-52601-y

Diversified Floral Resource Plantings Support Bee Communities after Apple Bloom in Commercial Orchards
Cited by: 12
Author(s): Sarah Heller, Neelendra K. Joshi, Timothy W. Leslie, Edwin G. Rajotte, David J. Biddinger
Software Mentions: 3
Published: about 5 years ago

10.3390/jof6040335

Rye Snow Mold-Associated Microdochium nivale Strains Inhabiting a Common Area: Variability in Genetics, Morphotype, Extracellular Enzymatic Activities, and Virulence
Cited by: 12
Author(s): Vladimir Gorshkov, Elena Osipova, М. Л. Пономарева, Sergey Ponomarev, Natalia Gogoleva, Olga Petrova, Olga Gogoleva, Azat Meshcherov, Alexander S. Balkin, Е. П. Ветчинкина, Kim O. Potapov, Alexander A. Kamnev, Viktor Korzun
Software Mentions: 3
Published: almost 4 years ago

10.3390/jof6040317

Space and Vine Cultivar Interact to Determine the Arbuscular Mycorrhizal Fungal Community Composition
Cited by: 3
Author(s): Álvaro López‐García, José A. Jurado‐Rivera, Josefina Bota, J. Cifré, Elena Baraza
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-57734-z

Diversity, compositional and functional differences between gut microbiota of children and adults
Cited by: 81
Author(s): Djawad Radjabzadeh, Cindy G. Boer, Sanne A. Beth, Pelle van der Wal, Jessica C. Kiefte–de Jong, Michelle A. E. Jansen, Sergey R. Konstantinov, Maikel P. Peppelenbosch, John P. Hays, Vincent W V Jaddoe, M. Arfan Ikram, Fernando Rivadeneira, Joyce B. J. van Meurs, André G. Uitterlinden, Carolina Medina‐Gomez, Henriëtte A. Moll, Robert Kraaij
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-57990-z

Differences in signal contrast and camouflage among different colour variations of a stomatopod crustacean, Neogonodactylus oerstedii
Cited by: 3
Author(s): Amanda M. Franklin, N. Justin Marshall, Adina D. Feinstein, Michael J. Bok, Anya D Byrd, Sara M. Lewis
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-58000-y

Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention
Cited by: 20
Author(s): Jessica A. Grembi, Linh P. Nguyen, Thomas D. Haggerty, Christopher D. Gardner, Susan Holmes, Julie Parsonnet
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-49897-1

Comparative analysis of the fecal microbiota from different species of domesticated and wild suids
Cited by: 21
Author(s): Florencia Correa‐Fiz, Miguel Blanco-Fuertes, María Jesús Navas, Anna Lacasta, Richard P. Bishop, Naftaly Githaka, Cynthia Onzere, Marie‐Frédérique Le Potier, Vanessa Almagro-Delgado, Jorge Martínez, Virginia Aragón, Fernando Rodrı́guez
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-49553-8

European spiny lobster recovery from overfishing enhanced through active restocking in Fully Protected Areas
Cited by: 10
Author(s): Alessandro Cau, Andrea Bellodi, Rita Cannas, Maurizio Fois, Paolo Guidetti, Davide Moccia, Antonio Pusceddu, María Cristina Follesa
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.50240

Adjusting for age improves identification of gut microbiome alterations in multiple diseases
Cited by: 100
Author(s): Tarini Shankar Ghosh, Mrinmoy Das, Ian B. Jeffery, Paul W. O’Toole
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-58587-2

Microbial Diversity and Metabolite Profiles of Palm Wine Produced From Three Different Palm Tree Species in Côte d’Ivoire
Cited by: 26
Author(s): Théodore N. Djeni, Karen H. Kouame, Francine D. M. Ake, Laurent S. T. Amoikon, Marcellin Koffi Djè, Kumaraswamy Jeyaram
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41396-020-0655-x

Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
Cited by: 38
Author(s): Alexander Crits-Christoph, Matthew R. Olm, Spencer Diamond, Keith Bouma‐Gregson, Jillian F. Banfield
Software Mentions: 3
Published: over 4 years ago

10.3390/ijerph14010037

Investigation of Indoor Air Quality in Houses of Macedonia
Cited by: 29
Author(s): Silvia Vilčeková, Ilija Zoran Apostoloski, Ľudmila Mečiarová, Eva Krídlová Burdová, Jozef Kiseľák
Software Mentions: 3
Published: almost 8 years ago

10.3390/jof7070550

Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus fumigatus and Haemophilus influenza?
Cited by: 8
Author(s): Sarah Dellière, Éric Dannaoui, M. Fieux, P. Bonfils, Guillaume Gricourt, Vanessa Démontant, Isabelle Podglajen, Paul‐Louis Woerther, Cécile Angebault, Françoise Botterel
Software Mentions: 3
Published: over 3 years ago

10.3390/jof7040244

Microbiome Status of Cider-Apples, from Orchard to Processing, with a Special Focus on Penicillium expansum Occurrence and Patulin Contamination
Cited by: 10
Author(s): Reem Al Riachy, Caroline Strub, Noël Durand, Benjamin Guibert, Hugues Guichard, Florentin Constancias, Vincent Chochois, Félicie Lopez-Lauri, Angélique Fontana, Sabine Schorr‐Galindo
Software Mentions: 3
Published: over 3 years ago

10.1007/s00442-017-3921-5

Nitrogen effects on the pelagic food web are modified by dissolved organic carbon
Cited by: 8
Author(s): Anne Deininger, Carolyn Faithfull, Ann‐Kristin Bergström
Software Mentions: 3
Published: over 7 years ago

10.1038/s41396-020-00820-x

Genomics and metatranscriptomics of biogeochemical cycling and degradation of lignin-derived aromatic compounds in thermal swamp sediment
Cited by: 27
Author(s): David J. Levy‐Booth, Ameena Hashimi, Raphael Roccor, Liyang Liu, Scott Renneckar, Lindsay D. Eltis, William W. Mohn
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-59276-w

Scanning electron microscopy and machine learning reveal heterogeneity in capsular morphotypes of the human pathogen Cryptococcus spp.
Cited by: 3
Author(s): William Lopes, Giuliano Netto Flores Cruz, Márcio L. Rodrigues, Mendeli H. Vainstein, Lívia Kmetzsch, Charley Christian Staats, Marilene Henning Vainstein, Augusto Schrank
Software Mentions: 3
Published: almost 5 years ago

10.1038/ismej.2016.40

Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling
Cited by: 37
Author(s): Nicholas E. Ilott, Julia Bollrath, Camille Danne, Chris Schiering, Matthew Shale, Krista Adelmann, Thomas Krausgruber, Andreas Heger, David Sims, Fiona Powrie
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-59182-1

Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions
Cited by: 51
Author(s): Máté Vass, Anna J. Székely, Eva S. Lindström, Silke Langenheder
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21134634

New Insight into the Composition of Wheat Seed Microbiota
Cited by: 33
Author(s): Agnieszka Kuźniar, Kinga Włodarczyk, Jarosław Grządziel, Małgorzata Woźniak, Karolina Furtak, Anna Gałązka, Ewa Dziadczyk, Ewa Skórzyńska-Polit, Agnieszka Woliñska
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-61193-x

Tropical pitcher plants (Nepenthes) act as ecological filters by altering properties of their fluid microenvironments
Cited by: 13
Author(s): Kadeem J. Gilbert, Leonora S. Bittleston, Wenfei Tong, Naomi E. Pierce
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-59436-y

Defining variation in pre-human ecosystems can guide conservation: An example from a Caribbean coral reef
Cited by: 15
Author(s): Aaron O’Dea, Mauro Lepore, Andrew H. Altieri, Melisa Chan, Jorge Manuel Morales‐Saldaña, Nicte-Ha Muñoz, John M. Pandolfi, Marguerite A. Toscano, Jian‐xin Zhao, Erin M. Dillon
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-52395-z

Environmental and ecological factors mediate taxonomic composition and body size of polyplacophoran assemblages along the Peruvian Province
Cited by: 6
Author(s): Christian M. Ibáñez, Melany Waldisperg, Felipe I. Torres, Sergio A. Carrasco, Javier Sellanes, M. Cecilia Pardo‐Gandarillas, Julia D. Sigwart
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-62224-3

Implication of the gut microbiome composition of type 2 diabetic patients from northern China
Cited by: 93
Author(s): Qian Li, Yen-Yu Chang, Ke Zhang, Hao Chen, Tao Shen, Zhi Zhang
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms17111734

Pine Defensive Monoterpene α-Pinene Influences the Feeding Behavior of Dendroctonus valens and Its Gut Bacterial Community Structure
Cited by: 33
Author(s): Letian Xu, Zhanghong Shi, Bo Wang, Min Lü, Sun Jian
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-020-60058-7

Short-term flooding increases CH4 and N2O emissions from trees in a riparian forest soil-stem continuum
Cited by: 33
Author(s): Thomas Schindler, Ülo Mander, Kateřina Macháčová, Mikk Espenberg, Dmitrii Krasnov, Jordi Escuer-Gatius, Gert Veber, Jaan Pärn, Kaido Soosaar
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijerph16214221

Field Research on Mixing Aeration in a Drinking Water Reservoir: Performance and Microbial Community Structure
Cited by: 10
Author(s): Zizhen Zhou, Tinlin Huang, Wenyu Gong, Yang Li, Yue Liu, Shilei Zhou
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-61753-1

Resistance of seagrass habitats to ocean acidification via altered interactions in a tri-trophic chain
Cited by: 9
Author(s): Begoña Martínez-Crego, Salvatrice Vizzini, Gianmaria Califano, Alexia Massa-Gallucci, Cristina Andolina, María Cristina Gambi, Rui Santos
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-019-55625-6

Succession of microbial populations and nitrogen-fixation associated with the biodegradation of sediment-oil-agglomerates buried in a Florida sandy beach
Cited by: 22
Author(s): Boryoung Shin, Ioana Bociu, Max Kolton, Markus Huettel, Joel E. Kostka
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.48479

High fat diet induces microbiota-dependent silencing of enteroendocrine cells
Cited by: 68
Author(s): Lihua Ye, Olaf Mueller, Jennifer Bagwell, Michel Bagnat, Rodger A. Liddle, John F. Rawls
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-50730-y

A microcosm approach highlights the response of soil mineral weathering bacterial communities to an increase of K and Mg availability
Cited by: 22
Author(s): Océane Nicolitch, Maureen Feucherolles, Jean-Louis Churin, Laure Fauchery, M.-P. Turpault, Stéphane Uroz
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms21010272

Physiological and Metabolic Effects of Yellow Mangosteen (Garcinia dulcis) Rind in Rats with Diet-Induced Metabolic Syndrome
Cited by: 24
Author(s): Oliver D. John, Peter Mouatt, Marwan E. Majzoub, Torsten Thomas, Sunil K. Panchal, Lindsay Brown
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21020386

Fecal Microbiota Transplantation Prevents Intestinal Injury, Upregulation of Toll-Like Receptors, and 5-Fluorouracil/Oxaliplatin-Induced Toxicity in Colorectal Cancer
Cited by: 100
Author(s): Ching Wei Chang, Hung Chang Lee, Li Hui Li, Jen-Shiu Chiang Chiau, Tsang En Wang, Wei Hung Chuang, Ming Jen Chen, Horng Yuan Wang, Shou Chuan Shih, Chia Yuan Liu, Tung Hu Tsai, Yu-Jen Chen
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-55703-9

Significant effect of HIV/HAART on oral microbiota using multivariate analysis
Cited by: 20
Author(s): Ann L. Griffen, Zachary A. Thompson, Clifford J. Beall, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Shahr B. Hashmi, Chiranjit Mukherjee, Aubrey Gilliland, José Antonio Vázquez, Michael E. Hagensee, Eugene J. Leys, Paul L. Fidel
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-60179-z

The association of Chlamydia trachomatis and Mycoplasma genitalium infection with the vaginal metabolome
Cited by: 22
Author(s): Joanna-Lynn C. Borgogna, Michelle Shardell, Carl J. Yeoman, Khalil G. Ghanem, Herlin Kadriu, Alexander Ulanov, Charlotte A. Gaydos, Justin Hardick, Courtney K. Robinson, Patrik M. Bavoil, Jacques Ravel, Rebecca M. Brotman, Susan Tuddenham
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-55028-7

Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis
Cited by: 66
Author(s): Michael J. Coffey, Shaun Nielsen, Bernd Wemheuer, Nadeem O. Kaakoush, Millie Garg, Bronwen Needham, Russell Pickford, Adam Jaffé, Torsten Thomas, Chee Y. Ooi
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-60779-9

Partitioning of diet between species and life history stages of sympatric and cryptic snappers (Lutjanidae) based on DNA metabarcoding
Cited by: 18
Author(s): Miwa Takahashi, Joseph D. DiBattista, Simon Jarman, Stephen Newman, Corey B. Wakefield, Euan S. Harvey, Michael Bunce
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-61559-1

Bacterial analysis in the early developmental stages of the black tiger shrimp (Penaeus monodon)
Cited by: 32
Author(s): Pacharaporn Angthong, Tanaporn Uengwetwanit, Sopacha Arayamethakorn, Panomkorn Chaitongsakul, Nitsara Karoonuthaisiri, Wanilada Rungrassamee
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms20163980

A Metagenomic-Based Approach for the Characterization of Bacterial Diversity Associated with Spontaneous Malolactic Fermentations in Wine
Cited by: 38
Author(s): Carmen Berbegal, Luigimaria Borruso, Mariagiovanna Fragasso, Maria Tufariello, Pasquale Russo, Lorenzo Brusetti, Giuseppe Spano, Vittorio Capozzi
Software Mentions: 3
Published: over 5 years ago

10.1038/s41396-019-0551-4

Biodiversity of protists and nematodes in the wild nonhuman primate gut
Cited by: 30
Author(s): Allison E. Mann, Florent Mazel, Matthew A. Lemay, Evan Morien, Vincent Billy, Martín M. Kowalewski, Anthony Di Fiore, Andrés Link, Tony L. Goldberg, Stacey R. Tecot, Andrea L. Baden, Andrés Gómez, Michelle L. Sauther, Frank P. Cuozzo, Gillian A.O. Rice, Nathaniel J. Dominy, Rebecca M. Stumpf, Rebecca J. Lewis, Larissa Swedell, Katherine R. Amato, Laura Wegener Parfrey
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-49464-8

Impact of cleaning and disinfection procedures on microbial ecology and Salmonella antimicrobial resistance in a pig slaughterhouse
Cited by: 20
Author(s): Arnaud Bridier, Patricia Le Grandois, Marie-Hélène Moreau, Charleyne Prénom, Alain Roux, Carole Feurer, Christophe Soumet
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.00458

Cohabiting family members share microbiota with one another and with their dogs
Cited by: 766
Author(s): Se Jin Song, Christian L. Lauber, Elizabeth K. Costello, Catherine Lozupone, Gregory Humphrey, Donna Berg-Lyons, J. Gregory Caporaso, Dan Knights, José C. Clemente, Sara Nakielny, Jeffrey I. Gordon, Noah Fierer, Rob Knight
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-019-56977-9

Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection
Cited by: 56
Author(s): Antonio José Fernández-González, Pablo J. Villadas, Carmen Gómez-Lama Cabanás, Antonio Valverde-Corredor, Angjelina Belaj, Jesús Mercado‐Blanco, Manuel Fernández‐López
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-019-50602-5

Next-Generation Sequencing reveals relationship between the larval microbiome and food substrate in the polyphagous Queensland fruit fly
Cited by: 21
Author(s): Rajib Majumder, Brodie Sutcliffe, Phillip W. Taylor, Toni A. Chapman
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms21030945

Effect of Pepper-Containing Diets on the Diversity and Composition of Gut Microbiome of Drosophila melanogaster
Cited by: 8
Author(s): Marleny García-Lozano, Joshua Haynes, Carlos Lopez-Ortiz, Purushothaman Natarajan, Yadira Peña-Garcia, Padma Nimmakayala, John R. Stommel, Suresh Babu Alaparthi, Cristian Sirbu, Nagamani Balagurusamy, Umesh K. Reddy
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms20092265

Effect of Drought Stress and Developmental Stages on Microbial Community Structure and Diversity in Peanut Rhizosphere Soil
Cited by: 58
Author(s): Lei Dai, Guanchu Zhang, Zipeng Yu, Hong Ding, Yang Xu, Zhimeng Zhang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-57468-y

Evidence of altered mucosa-associated and fecal microbiota composition in patients with Irritable Bowel Syndrome
Cited by: 33
Author(s): Johanna Sundin, Imran Aziz, Sofia Nordlander, Annikka Polster, Yue Hu, Luisa W. Hugerth, Alexandra Pennhag, Lars Engstrand, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2018.03175

Depth-Dependent Environmental Drivers of Microbial Plankton Community Structure in the Northern Gulf of Mexico
Cited by: 17
Author(s): Cole G. Easson, Jose V. Lopez
Software Mentions: 3
Published: almost 6 years ago

10.3390/pathogens9040309

Resistance of Tick Gut Microbiome to Anti-Tick Vaccines, Pathogen Infection and Antimicrobial Peptides
Cited by: 26
Author(s): Agustı́n Estrada-Peña, Alejandro Cabezas-Cruz, Dasiel Obregón
Software Mentions: 3
Published: over 4 years ago

10.1186/s12936-021-03606-4

Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota
Cited by: 24
Author(s): Diana Omoke, Mathew Kipsum, Solomon Otieno, Edward Esalimba, Mili Sheth, Audrey Lenhart, Ezekiel Mugendi Njeru, Eric Ochomo, Nsa Dada
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2021.694406

16S rRNA Gene Metabarcoding Indicates Species-Characteristic Microbiomes in Deep-Sea Benthic Foraminifera
Cited by: 2
Author(s): I. Salonen, Panagiota-Myrsini Chronopoulou, Hidetaka Nomaki, Dewi Langlet, Masashi Tsuchiya, Karoliina A. Koho
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-94205-5

On the robustness of inference of association with the gut microbiota in stool, rectal swab and mucosal tissue samples
Cited by: 13
Author(s): Shan Sun, Xiangzhu Zhu, Xiang Huang, Harvey J. Murff, Reid M. Ness, Douglas L. Seidner, Alicia Sorgen, Ivory C. Blakley, Chang Yu, Qi Dai, M. Andrea Azcárate-Peril, Martha J. Shrubsole, Anthony A. Fodor
Software Mentions: 3
Published: over 3 years ago

10.1186/s13071-019-3517-5

Surface sterilization methods impact measures of internal microbial diversity in ticks
Cited by: 65
Author(s): Florian Binetruy, Marlène Dupraz, Marie Buysse, Olivier Duron
Software Mentions: 3
Published: over 5 years ago

10.1002/lom3.10237

Evaluation of marine zooplankton community structure through environmental DNA metabarcoding
Cited by: 97
Author(s): Anni Djurhuus, Kathleen J. Pitz, Natalie A. Sawaya, Jaimie Rojas‐Márquez, Brianna Michaud, Enrique Montes, Frank E. Müller-Karger, Mya Breitbart
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-92763-2

Contrasting alien effects on native diversity along biotic and abiotic gradients in an arid protected area
Cited by: 2
Author(s): Reham F. El‐Barougy, Ibrahim Elgamal, Abdel‐Hamid A. Khedr, Louis‐Félix Bersier
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-93557-2

All shallow coastal habitats matter as nurseries for Mediterranean juvenile fish
Cited by: 14
Author(s): Adrien Cheminée, Laurence Le Diréach, Élodie Rouanet, Patrick Astruch, Adrien Goujard, Aurelie Blanfuné, Denis Bonhomme, Laureline Chassaing, Jean-Yves Jouvenel, Sandrine Ruitton, Thierry Thibaut, Mireille Harmelin-Vivien
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2021.628792

Heterogeneity of Microbial Communities in Soils From the Antarctic Peninsula Region
Cited by: 14
Author(s): Pablo Almela, Ana Justel, Antonio Quesada
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13071-018-3201-1

Spatial-temporal heterogeneity in malaria receptivity is best estimated by vector biting rates in areas nearing elimination
Cited by: 25
Author(s): Thomas R. Burkot, Hugo Bugoro, Allan Apairamo, Robert D. Cooper, Diego F. Echeverry, Danyal Odabasi, Nigel W. Beebe, Victoria Makuru, Honglin Xiao, Jenna R. Davidson, Nicholas A. Deason, Hedrick Reuben, James W. Kazura, Frank H. Collins, Neil F. Lobo, Tanya L. Russell
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-91452-4

Host specific endophytic microbiome diversity and associated functions in three varieties of scented black rice are dependent on growth stage
Cited by: 29
Author(s): Kunal Singha, Brahmanand Singh, Piyush Pandey
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-91755-6

Changes in soil microbial community and activity caused by application of dimethachlor and linuron
Cited by: 14
Author(s): Juraj Medo, Jana Maková, Janka Medová, Nikola Lipková, Renata Cinkocki, Radoslav Omelka, Soňa Javoreková
Software Mentions: 3
Published: over 3 years ago

10.3390/life10020013

Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica
Cited by: 12
Author(s): Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Jason E. Stajich, Laura Selbmann
Software Mentions: 3
Published: almost 5 years ago

10.3897/zookeys.1037.66001

Composition and diversity of butterflies (Lepidoptera, Papilionoidea) along an atmospheric pollution gradient in the Monterrey Metropolitan Area, Mexico
Cited by: 3
Author(s): Edmar Meléndez-Jaramillo, César Cantú-Ayala, Eduardo Javier Treviño Garza, Uriel Jeshua Sánchez-Reyes, Bernal Herrera-Fernández
Software Mentions: 3
Published: over 3 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292