Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.1002/ece3.4559
Table for five, please: Dietary partitioning in boreal bats
Cited by: 62
Author(s): Eero J. Vesterinen, Anna I. E. Puisto, Anna Blomberg, Thomas M. Lilley
Software Mentions: 4
Published: about 6 years ago
10.1002/ece3.4842
Studying the microbiota of bats: Accuracy of direct and indirect samplings
Cited by: 9
Author(s): Muriel Dietrich, Wanda Markotter
Software Mentions: 4
Published: almost 6 years ago
10.1002/ece3.7842
Characteristics and metabolic patterns of soil methanogenic archaea communities in the high‐latitude natural forested wetlands of China
Cited by: 3
Author(s): Di Wu, Caihong Zhao, Hui Bai, Fude Feng, Xin Sui, Sun Guo-rong
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.6299
Interspecific comparison of the fecal microbiota structure in three Arctic migratory bird species
Cited by: 13
Author(s): Hyunjun Cho, Won Young Lee
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.5718
Responses of zooplankton body size and community trophic structure to temperature change in a subtropical reservoir
Cited by: 29
Author(s): Xiaofei Gao, Huihuang Chen, Lynn Govaert, Wenping Wang, Jun Yang
Software Mentions: 4
Published: about 5 years ago
10.1002/ece3.6560
Plant species identity drives soil microbial community structures that persist under a following crop
Cited by: 19
Author(s): Aaron Fox, Andreas Lüscher, Franco Widmer
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.7158
Among‐individual diet variation within a lake trout ecotype: Lack of stability of niche use
Cited by: 4
Author(s): Louise Chavarie, Kimberly L. Howland, Les N. Harris, Colin P. Gallagher, Michael J. Hansen, William M. Tonn, Andrew M. Muir, Charles C. Krueger
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.6413
Gut microbiomes of sympatric Amazonian wood‐eating catfishes (Loricariidae) reflect host identity and little role in wood digestion
Cited by: 12
Author(s): Mark McCauley, Donovan P. German, Nathan K. Lujan, Colin R. Jackson
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.7398
Fine‐scale foraging behavior reveals differences in the functional roles of herbivorous reef fishes
Cited by: 8
Author(s): Robert F. Semmler, Simon J. Brandl, Sally A. Keith, David R. Bellwood
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.6983
Foliar fungal endophyte community structure is independent of phylogenetic relatedness in an Asteraceae common garden
Cited by: 9
Author(s): Briana K. Whitaker, Natalie Christian, Qiang Chai, Keith Clay
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.7067
Compartmentalized organization of ecological niche occupation in insular invertebrate communities
Cited by: 5
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 4
Published: about 4 years ago
10.1002/ece3.5816
Spatial and temporal structure of diversity and demographic dynamics along a successional gradient of tropical forests in southern Brazil
Cited by: 18
Author(s): Cilmar Antônio Dalmaso, Márcia C. M. Marques, Pedro Higuchi, Victor P. Zwiener, Renato Marques
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.6826
Are native and non‐native pollinator friendly plants equally valuable for native wild bee communities?
Cited by: 31
Author(s): Nicola Seitz, Dennis vanEngelsdorp, Sara D. Leonhardt
Software Mentions: 4
Published: about 4 years ago
10.1002/ece3.6811
Differences in rhizosphere microbial communities between native and non‐native <i>Phragmites australis</i> may depend on stand density
Cited by: 14
Author(s): Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, Deborah E. Goldberg
Software Mentions: 4
Published: about 4 years ago
10.1002/ece3.7040
Establishing the South Australian Macrobenthic Traits (SAMT) database: A trait classification for functional assessments
Cited by: 8
Author(s): Orlando Lam-Gordillo, Ryan Baring, Sabine Dittmann
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.7679
Pollen DNA metabarcoding identifies regional provenance and high plant diversity in Australian honey
Cited by: 17
Author(s): Liz Milla, J. M. Kale Sniderman, Rose Lines, Mahsa Mousavi‐Derazmahalleh, Francisco Encinas‐Viso
Software Mentions: 4
Published: over 3 years ago
10.3389/fmed.2021.646710
Dietary and Pharmacologic Manipulations of Host Lipids and Their Interaction With the Gut Microbiome in Non-human Primates
Cited by: 3
Author(s): Jennifer M. Lang, Leslie R. Sedgeman, Lei Cai, Joseph D. Layne, Zhen Wang, Calvin Pan, Richard Lee, Ryan E. Temel, Aldons J. Lusis
Software Mentions: 4
Published: about 3 years ago
10.3389/fmed.2021.607255
Comparison Between Cultivation and Sequencing Based Approaches for Microbiota Analysis in Swabs and Biopsies of Chronic Wounds
Cited by: 9
Author(s): Aleksander Mahnič, Vesna Breznik, Maja Bombek Ihan, Maja Rupnik
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2020.01590
Seasonal Variation of Bacterial Diversity Along the Marine Particulate Matter Continuum
Cited by: 38
Author(s): Mireia Mestre, Juan Höfer, M. Montserrat Sala, Josep M. Gasol
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2016.00582
Development of Ruminal and Fecal Microbiomes Are Affected by Weaning But Not Weaning Strategy in Dairy Calves
Cited by: 123
Author(s): S. J. Meale, Shucong Li, Paula Azevedo, Hooman Derakhshani, J.C. Plaizier, Ehsan Khafipour, M.A. Steele
Software Mentions: 4
Published: over 8 years ago
10.3389/fmicb.2020.01953
Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe
Cited by: 106
Author(s): Leho Tedersoo, Sten Anslan, Mohammad Bahram, Rein Drenkhan, Karin Pritsch, Franz Buegger, Allar Padari, Niloufar Hagh‐Doust, Vladimir Mikryukov, Daniyal Gohar, Rasekh Amiri, Indrek Hiiesalu, Reimo Lutter, Raul Rosenvald, Elisabeth Rähn, Kalev Adamson, Tiia Drenkhan, Hardi Tullus, Katrin Jürimaa, Ivar Sibul, Eveli Otsing, Sergei Põlme, Marek Metslaid, Kaire Loit, Ahto Agan, Rasmus Puusepp, Inge Varik, Urmas Kõljalg, Kessy Abarenkov
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2019.01332
Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland
Cited by: 68
Author(s): Anna Maria Fiore-Donno, Tim Richter-Heitmann, Florine Degrune, Kenneth Dumack, Kathleen M. Regan, Sven Marhan, Runa S. Boeddinghaus, Matthias C. Rillig, Michael W. Friedrich, Ellen Kandeler, Michael Bonkowski
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2020.569630
Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver
Cited by: 21
Author(s): H Lutz, Alexandria Vangelatos, Neil Gottel, Antonio Marco Maria Osculati, Silvia Damiana Visonà, Sheree J. Finley, Jack A. Gilbert, Gulnaz T. Javan
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2019.02257
Effects of Habitat Partitioning on the Distribution of Bacterioplankton in Deep Lakes
Cited by: 12
Author(s): Nico Salmaso
Software Mentions: 4
Published: about 5 years ago
10.3389/fmicb.2014.00752
Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage
Cited by: 58
Author(s): Björn Breidenbach, Ralf Conrad
Software Mentions: 4
Published: almost 10 years ago
10.3389/fmicb.2020.572706
Influence of Season and Soil Properties on Fungal Communities of Neighboring Climax Forests (Carpinus cordata and Fraxinus rhynchophylla)
Cited by: 10
Author(s): Ki Hyeong Park, Seung‐Yoon Oh, Shinnam Yoo, Jonathan J. Fong, Changsun Kim, Jong Won Jo, Young Woon Lim
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2019.00512
Mycobiome Sequencing and Analysis Applied to Fungal Community Profiling of the Lower Respiratory Tract During Fungal Pathogenesis
Cited by: 33
Author(s): Lisa R. McTaggart, John W. Copeland, Anuradha Surendra, Pauline W. Wang, Shahid Husain, Bryan Coburn, David S. Guttman, Julianne V. Kus
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2018.03259
Picoeukaryotic Diversity And Activity in the Northwestern Pacific Ocean Based on rDNA and rRNA High-Throughput Sequencing
Cited by: 10
Author(s): Feipeng Wang, Yuyuan Xie, Wenxue Wu, Ping Sun, Lei Wang, Bangqin Huang
Software Mentions: 4
Published: almost 6 years ago
10.3389/fmicb.2019.03007
Core and Differentially Abundant Bacterial Taxa in the Rhizosphere of Field Grown Brassica napus Genotypes: Implications for Canola Breeding
Cited by: 37
Author(s): Zelalem M. Taye, Bobbi L. Helgason, Jennifer K. Bell, Charlotte E. Norris, Sally Vail, Stephen J. Robinson, Isobel A. P. Parkin, Melissa M. Arcand, Steven D. Mamet, Matthew G. Links, Tanner Dowhy, Steven D. Siciliano, Eric G. Lamb
Software Mentions: 4
Published: almost 5 years ago
10.3389/fmicb.2020.579072
Soil Fungal Community Composition, Not Assembly Process, Was Altered by Nitrogen Addition and Precipitation Changes at an Alpine Steppe
Cited by: 12
Author(s): Yuanming Xiao, Changbin Li, Yang Yang, Yunfeng Peng, Yuanhe Yang, Guoying Zhou
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2018.01647
Tucumã Oil Shifted Ruminal Fermentation, Reducing Methane Production and Altering the Microbiome but Decreased Substrate Digestibility Within a RUSITEC Fed a Mixed Hay – Concentrate Diet
Cited by: 29
Author(s): Aline Maria Pereira Cruz Ramos, Stephanie A. Terry, Devin B. Holman, Gerhard Breves, L. G. R. Pereira, André G. M. Silva, A. V. Chaves
Software Mentions: 4
Published: over 6 years ago
10.3389/fmicb.2017.01656
Linseed Oil Supplementation of Lambs’ Diet in Early Life Leads to Persistent Changes in Rumen Microbiome Structure
Cited by: 36
Author(s): Tamsin Lyons, T. M. Boland, Sean Storey, Evelyn Doyle
Software Mentions: 4
Published: about 7 years ago
10.3389/fmicb.2014.00223
Characterizing the avian gut microbiota: membership, driving influences, and potential function
Cited by: 297
Author(s): David W. Waite, Michael W. Taylor
Software Mentions: 4
Published: over 10 years ago
10.3389/fmicb.2020.588264
Pretreatment of Rapeseed Meal Increases Its Recalcitrant Fiber Fermentation and Alters the Microbial Community in an in vitro Model of Swine Large Intestine
Cited by: 5
Author(s): Long Cheng, Koen Venema
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2021.589948
Trace Metal Contamination Impacts Predicted Functions More Than Structure of Marine Prokaryotic Biofilm Communities in an Anthropized Coastal Area
Cited by: 19
Author(s): Clément Coclet, Cédric Garnier, Sébastien D’Onofrio, Guy Durrieu, Emilie Pasero, Christophe Le Poupon, Dario Omanović, Jean-Ulrich Mullot, Benjamin Misson, Jean‐François Briand
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2021.729047
Rhizosphere Soil Bacterial Communities of Continuous Cropping-Tolerant and Sensitive Soybean Genotypes Respond Differently to Long-Term Continuous Cropping in Mollisols
Cited by: 12
Author(s): Ming Yuan, Tao Yu, Qihan Shi, Han Dong-wei, Kanchao Yu, Lianxia Wang, Shurong Wang, Xiang Hao, Ronghui Wen, Hai Nian, Tengxiang Lian
Software Mentions: 4
Published: about 3 years ago
10.3389/fmicb.2020.01869
Comparative Genomics of Microbacterium Species to Reveal Diversity, Potential for Secondary Metabolites and Heavy Metal Resistance
Cited by: 20
Author(s): Erika Corretto, Livio Antonielli, Angela Sessitsch, Christoph Höfer, Markus Puschenreiter, Siegrid Widhalm, Karivaradharajan Swarnalakshmi, Günter Brader
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2020.602404
Bovine Teat Cistern Microbiota Composition and Richness Are Associated With the Immune and Microbial Responses During Transition to Once-Daily Milking
Cited by: 7
Author(s): Lucie Rault, Pierre-Alexandre Lévêque, Sarah Barbey, Frédéric Launay, Hélène Larroque, Yves Le Loir, Pierre Germon, Jocelyne Guinard-Flament, Sergine Even
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2019.00346
Successional Dynamics and Seascape-Level Patterns of Microbial Communities on the Canopy-Forming Kelps Nereocystis luetkeana and Macrocystis pyrifera
Cited by: 56
Author(s): Brooke L. Weigel, Catherine A. Pfister
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2019.01988
Evaluation of the Nasopharyngeal Microbiota in Beef Cattle Transported to a Feedlot, With a Focus on Lactic Acid-Producing Bacteria
Cited by: 20
Author(s): Samat Amat, Devin B. Holman, Edouard Timsit, Timothy Schwinghamer, Trevor W. Alexander
Software Mentions: 4
Published: about 5 years ago
10.3389/fmicb.2020.590212
Gut Microbiomes Differ Among Dietary Types and Stool Consistency in the Captive Red Wolf (Canis rufus)
Cited by: 19
Author(s): Morgan Bragg, Elizabeth W. Freeman, Haw Chuan Lim, Nucharin Songsasen, Carly R. Muletz‐Wolz
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2018.01188
Canola Root–Associated Microbiomes in the Canadian Prairies
Cited by: 67
Author(s): Chih Ying Lay, Terrence H. Bell, Chantal Hamel, K. Neil Harker, Ramona M. Mohr, Charles W. Greer, Étienne Yergeau, Marc St‐Arnaud
Software Mentions: 4
Published: over 6 years ago
10.3389/fmicb.2019.00347
Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches
Cited by: 49
Author(s): Logan M. Peoples, Eleanna Grammatopoulou, Michelle Pombrol, Xu Xin, Oladayo Osuntokun, Jessica M. Blanton, Eric E. Allen, Clifton C. Nunnally, Jeffrey C. Drazen, Daniel J. Mayor, Douglas H. Bartlett
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2020.540404
The Total and Active Bacterial Community of the Chlorolichen Cetraria islandica and Its Response to Long-Term Warming in Sub-Arctic Tundra
Cited by: 10
Author(s): Ingeborg J. Klarenberg, Christoph Keuschnig, Denis Warshan, Ingibjörg S. Jónsdóttir, Oddur Vilhelmsson
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2021.670336
Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes
Cited by: 47
Author(s): Danielle Peterson, Kevin S. Bonham, Sophie Rowland, Cassandra Wolos Pattanayak, Vanja Klepac‐Ceraj, Sean Deoni, Viren D’Sa, Muriel Bruchhage, Alexandra Volpe, Jennifer Beauchemin, Caroline Wallace, J. H. Rogers, R. Cano, Jéssica Moreira Fernandes, Elizabeth Walsh, Brittany Rhodes, Matthew J. Huentelman, Candace R. Lewis, Matthew De Both, Marcus Naymik, Susan Carnell, E.N.H. Jansen, Jennifer R. Sadler, Gita Thapaliya, Monique K. LeBourgeois, Hans G. Mueller, Jane-Ling Wang, Changbo Zhu, Yaqing Chang, Joseph M. Braun
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2020.00133
Consequences of Domestication on Gut Microbiome: A Comparative Study Between Wild Gaur and Domestic Mithun
Cited by: 15
Author(s): Vandana R. Prabhu, . Wasimuddin, Ranganathan Kamalakkannan, Moolamkudy Suresh Arjun, Muniyandi Nagarajan
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2018.02345
The Endophytic Mycobiome of European Ash and Sycamore Maple Leaves – Geographic Patterns, Host Specificity and Influence of Ash Dieback
Cited by: 44
Author(s): Markus Schlegel, Valentin Queloz, Thomas N. Sieber
Software Mentions: 4
Published: about 6 years ago
10.3389/fmicb.2020.593232
Simulation of Microbial Response to Accidental Diesel Spills in Basins Containing Brackish Sea Water and Sediment
Cited by: 4
Author(s): Lijuan Yan, Nan Hui, Suvi Simpanen, Laura Tudeer, Martin Romantschuk
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2021.656889
Frozen Mother’s Own Milk Can Be Used Effectively to Personalize Donor Human Milk
Cited by: 3
Author(s): Monica Lamberti, Natalie A. Harrison, Marion M Bendixen, Evon M. DeBose-Scarlett, Sharon Thompson, Josef Neu, Leslie A. Parker, Graciela L. Lorca
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2020.00980
Comparison of Bacterial and Fungal Composition and Their Chemical Interaction in Free Tropospheric Air and Snow Over an Entire Winter Season at Mount Sonnblick, Austria
Cited by: 11
Author(s): Nora Els, Marion Greilinger, Michael Reisecker, Romie Tignat-Perrier, Kathrin Baumann‐Stanzer, Anne Kasper-Giebl, Birgit Sattler, Catherine Larose
Software Mentions: 4
Published: over 4 years ago
10.3389/fvets.2021.666887
Replacement of Metaphylactic Antimicrobial Therapy by Oral Administration of Ligilactobacillus salivarius MP100 in a Pig Farm
Cited by: 7
Author(s): Odón J. Sobrino, Claudio Alba, Rebeca Arroyo, Inés Pérez, Lydia Sariego, Susana Delgado, Leónides Fernández, Julián de María, Pilar Fumanal, Antonio J. Fumanal, Juan M. Rodríguez
Software Mentions: 4
Published: over 3 years ago
10.3389/fvets.2018.00324
Developing Farm-Level Post-vaccination Sero-Monitoring Systems for H5N1 Highly Pathogenic Avian Influenza in an Endemically Infected Country
Cited by: 0
Author(s): Peter A. Durr, Risa Indriani, Paul Selleck, Abdul R M Adjid, Tatty Syafriati, Jagoda Ignjatovic
Software Mentions: 4
Published: almost 6 years ago
10.3389/fvets.2021.679368
Effects of Bacillus amyloliquefaciens Instead of Antibiotics on Growth Performance, Intestinal Health, and Intestinal Microbiota of Broilers
Cited by: 13
Author(s): Baikui Wang, Yuguang Zhou, Li Tang, Zihan Zeng, Li Gong, Yanping Wu, Weifen Li
Software Mentions: 4
Published: over 3 years ago
10.1111/1365-2435.13453
Soil functional responses to drought under range‐expanding and native plant communities
Cited by: 14
Author(s): Marta Manrubia, Wim H. van der Putten, Carolin Weser, Freddy C. ten Hooven, Henk Martens, E.P. Brinkman, Stefan Geisen, Kelly S. Ramirez, G. F. Veen
Software Mentions: 4
Published: about 5 years ago
10.1111/1365-2435.13028
Habitat heterogeneity induces rapid changes in the feeding behaviour of generalist arthropod predators
Cited by: 42
Author(s): Karin Staudacher, Oskar Rennstam Rubbmark, Klaus Birkhofer, Gerard Malsher, Daniela Sint, Mattias Jonsson, Michael Traugott
Software Mentions: 4
Published: almost 7 years ago
10.1186/s13059-020-01964-x
Longitudinal survey of microbiome associated with particulate matter in a megacity
Cited by: 55
Author(s): Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiong Xiao, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A. Gilbert, Ting Zhu
Software Mentions: 4
Published: over 4 years ago
10.1186/s13073-021-00853-7
Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis
Cited by: 20
Author(s): Damian R. Plichta, Juhi Somani, Matthieu Pichaud, Zachary S Wallace, Ana D. Fernandes, Cory A. Perugino, Harri Lähdesmäki, John H. Stone, Hera Vlamakis, Daniel C. Chung, Dinesh Khanna, Shiv Pillai, Ramnik J. Xavier
Software Mentions: 4
Published: over 3 years ago
10.1186/s13073-021-00856-4
Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India
Cited by: 29
Author(s): Camila Alvarez-Silva, Alireza Kashani, Torben Hansen, Nishal Kumar Pinna, Ranjit Mohan Anjana, Anirban Dutta, Shruti Saxena, Julie Støy, Ulla Kampmann, Trine Nielsen, Torben Jørgensen, Visvanathan Gnanaprakash, Rameshkumar Gnanavadivel, Sukumaran Aswath, Coimbatore Subramanian Shanthi Rani, Kristine Færch, Venkatesan Radha, Muthuswamy Balasubramanyam, G. Balakrish Nair, Bhabatosh Das, Henrik Vestergaard, Torben Hansen, Sharmila S. Mande, Viswanathan Mohan, Manimozhiyan Arumugam, Oluf Pedersen
Software Mentions: 4
Published: over 3 years ago
10.1093/gigascience/gix107
HOMINID: a framework for identifying associations between host genetic variation and microbiome composition
Cited by: 8
Author(s): Joshua Lynch, Karen Tang, Sambhawa Priya, Joanna Sands, Margaret Sands, Evan Tang, Sayan Mukherjee, Dan Knights, Ran Blekhman
Software Mentions: 4
Published: about 7 years ago
10.1080/19490976.2020.1822729
Metagenomic analysis reveals distinct patterns of gut lactobacillus prevalence, abundance, and geographical variation in health and disease
Cited by: 20
Author(s): Tarini Shankar Ghosh, Jerome Arnoux, Paul W. O’Toole
Software Mentions: 4
Published: about 4 years ago
10.1080/19490976.2020.1785246
Dysbiosis in a canine model of human fistulizing Crohn’s disease
Cited by: 9
Author(s): Ana Maldonado‐Contreras, Lluís Ferrer, Caitlin Cawley, Sarah Crain, Shakti Bhattarai, Juan F Toscano, Doyle V. Ward, Andrew M. Hoffman
Software Mentions: 4
Published: over 4 years ago
10.1080/19490976.2020.1814107
Young versus aged microbiota transplants to germ-free mice: increased short-chain fatty acids and improved cognitive performance
Cited by: 58
Author(s): Jun-Young Lee, Venugopal Reddy Venna, David J. Durgan, Huanan Shi, Jacob Hudobenko, Nagireddy Putluri, Joseph F. Petrosino, Louise D. McCullough, Robert M. Bryan
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.ppat.1009234
Winter is coming–Temperature affects immune defenses and susceptibility to Batrachochytrium salamandrivorans
Cited by: 20
Author(s): Edward Davis Carter, Molly C. Bletz, Mitchell Le Sage, Brandon LaBumbard, Louise A. Rollins‐Smith, Douglas C. Woodhams, Debra L. Miller, Matthew J. Gray
Software Mentions: 4
Published: almost 4 years ago
10.1016/j.psj.2021.101181
Cecal microbiome profile of Hawaiian feral chickens and pasture-raised broiler (commercial) chickens determined using 16S rRNA amplicon sequencing
Cited by: 12
Author(s): Sudhir Yadav, Kayla D. Caliboso, Jannel E. Nanquil, Jiachao Zhang, Helmut Kae, Kabi R. Neupane, Birendra Mishra
Software Mentions: 4
Published: over 3 years ago
10.1016/j.pocean.2018.11.003
Megafaunal variation in the abyssal landscape of the Clarion Clipperton Zone
Cited by: 71
Author(s): Erik Simon-Lledó, Brian J. Bett, Veerle A.I. Huvenne, Timm Schoening, Noëlie M.A. Benoist, Rachel M. Jeffreys, Jennifer M. Durden, Daniel O. B. Jones
Software Mentions: 4
Published: almost 6 years ago
10.1098/rsos.170400
Native freshwater species get out of the way: Prussian carp (<i>Carassius gibelio</i>) impacts both fish and benthic invertebrate communities in North America
Cited by: 20
Author(s): Jonathan L. W. Ruppert, Cassandra Docherty, Kenton Neufeld, Kyle Hamilton, Laura MacPherson, Mark S. Poesch
Software Mentions: 4
Published: about 7 years ago
10.1098/rsos.191952
Evaluation of host effects on ectomycorrhizal fungal community compositions in a forested landscape in northern Japan
Cited by: 7
Author(s): Shiro Matsuoka, Yasumasa Sugiyama, Ryunosuke Tateno, Shihomi Imamura, Eri Kawaguchi, Takashi Osono
Software Mentions: 4
Published: almost 5 years ago
10.1098/rsos.192074
Damselfishes alleviate the impacts of sediments on host corals
Cited by: 11
Author(s): Tory J. Chase, Morgan S. Pratchett, Mike McWilliam, Margaux Y. Hein, Sterling B. Tebbett, Mia O. Hoogenboom
Software Mentions: 4
Published: over 4 years ago
10.1098/rsos.202265
The impacts of past, present and future ocean chemistry on predatory planktonic snails
Cited by: 4
Author(s): Deborah Wall-Palmer, Lisette Mekkes, Paula Ramos-Silva, Linda K. Dämmer, Erica Goetze, Karel Bakker, Elza Duijm, Katja T. C. A. Peijnenburg
Software Mentions: 4
Published: over 3 years ago
10.1186/s12931-018-0950-5
Microbial dysbiosis and mortality during mechanical ventilation: a prospective observational study
Cited by: 56
Author(s): Daphnée Lamarche, Jennie Johnstone, Nicole Zytaruk, France Clarke, Lori Hand, Dessi Loukov, Jake C. Szamosi, Laura Rossi, L. Patrick Schenck, Chris P. Verschoor, Ellen McDonald, Maureen O. Meade, John C. Marshall, Dawn M. E. Bowdish, Tim Karachi, Diane Heels‐Ansdell, Deborah J. Cook, Michael G. Surette
Software Mentions: 4
Published: almost 6 years ago
10.1126/sciadv.aay1048
Variable effects of local management on coral defenses against a thermally regulated bleaching pathogen
Cited by: 14
Author(s): Deanna S. Beatty, Jinu Mathew Valayil, Cody S. Clements, Kim B. Ritchie, Frank J. Stewart, Mark E. Hay
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-018-32772-w
Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers
Cited by: 13
Author(s): Isidora Echenique‐Subiabre, Anouk Zancarini, Mark W. Heath, Susanna A. Wood, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-018-33950-6
Diversity of macaque microbiota compared to the human counterparts
Cited by: 37
Author(s): Zigui Chen, Yun Kit Yeoh, Michael K. Hui, Pak-Kin Wong, Max Kam-Kwan Chan, Margaret Ip, Jun Yu, Robert D. Burk, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-018-34640-z
Reduced diversity of gut microbiota in two Aedes mosquitoes species in areas of recent invasion
Cited by: 30
Author(s): Fausta Rosso, Valentina Tagliapietra, Davide Albanese, Massimo Pindo, Frédéric Baldacchino, Daniele Arnoldi, Claudio Donati, Annapaola Rizzoli
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-018-34453-0
Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice
Cited by: 64
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Brian D. Piccolo, Kelly E. Mercer, Aline Andres, Keshari Thakali, Kartik Shankar
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-018-35230-9
Decreased microbial co-occurrence network stability and SCFA receptor level correlates with obesity in African-origin women
Cited by: 35
Author(s): Lara R. Dugas, Beatriz Peñalver Bernabé, Medha Priyadarshini, Na Fei, Seo Jin Park, Laquita Brown, Jacob Plange‐Rhule, David E. Nelson, Evelyn Toh, Xiang Gao, Qunfeng Dong, Jun Sun, Stephanie Kliethermes, Neil Gottel, Amy Luke, Jack A. Gilbert, Brian T. Layden
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-018-38049-6
Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota
Cited by: 30
Author(s): Jennifer Rosenbaum, Mykhaylo Usyk, Zigui Chen, Christine P. Zolnik, Heidi E. Jones, Levi Waldron, Jennifer Beam Dowd, Lorna E. Thorpe, Robert D. Burk
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-019-41542-1
Thickness determines microbial community structure and function in nitrifying biofilms via deterministic assembly
Cited by: 66
Author(s): Carolina Suarez, Maria Piculell, Oskar Modin, Silke Langenheder, Frank Persson, Malte Hermansson
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-42865-9
Differences in resource use lead to coexistence of seed-transmitted microbial populations
Cited by: 15
Author(s): Gloria Torres-Cortés, Benjamin J. Garcia, Stéphane Compant, Samir Rezki, Piet Jones, Anne Préveaux, Martial Briand, Alain Roulet, Olivier Bouchez, Daniel Jacobson, Matthieu Barret
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-43305-4
Soil amendments with ethylene precursor alleviate negative impacts of salinity on soil microbial properties and productivity
Cited by: 28
Author(s): Hongwei Liu, Muhammad Yahya Khan, Lília C. Carvalhais, Manuel Delgado‐Baquerizo, Lijuan Yan, Mark Crawford, Paul G. Dennis, Brajesh K. Singh
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-43325-0
Deep-sea benthic communities in the largest oceanic desert are structured by the presence of polymetallic crust
Cited by: 8
Author(s): Juliette Delavenne, Louise Keszler, Magalie Castelin, Pierre Livet, Philippe Maestrati, Sarah Samadi
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-45724-9
Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7−/− mice
Cited by: 18
Author(s): Lisa Perruzza, Francesco Strati, Giorgio Gargari, Anna Maria D’Erchia, Bruno Fosso, Graziano Pesole, Simone Guglielmetti, Fabio Grassi
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-46106-x
Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome
Cited by: 32
Author(s): Caroline De Tender, Bart Mesuere, Felix Van der Jeugt, Annelies Haegeman, Tom Ruttink, Bart Vandecasteele, Peter Dawyndt, Jane Debode, Eiko E. Kuramae
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-46353-y
Incense Burning is Associated with Human Oral Microbiota Composition
Cited by: 11
Author(s): Yvonne Vallès, Claire K. Inman, Brandilyn A. Peters, Laila Abdel Wareth, Abdishakur Abdulle, Habiba Alsafar, Fatme Al Anouti, Ayesha Al Dhaheri, Divya Galani, Muna Abdalla Mohamed Haji, Aisha Al Hamiz, Ayesha Al Hosani, Mohammed Al-Houqani, Abdulla AlJunaibi, Marina Kazim, Tomas Kirchhoff, Wael Al Mahmeed, Fatma Al-Maskari, Abdullah Alnaeemi, Naima Oumeziane, Ravichandran Ramasamy, Ann Marie Schmidt, Henri Vallès, Eiman Al Zaabi, Scott E. Sherman, Raghib Ali, Jiyoung Ahn, Richard B. Hayes
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-48166-5
Enrichment of intracellular sulphur cycle –associated bacteria in intertidal benthic foraminifera revealed by 16S and aprA gene analysis
Cited by: 12
Author(s): I. Salonen, Panagiota-Myrsini Chronopoulou, Clare Bird, Gert‐Jan Reichart, Karoliina A. Koho
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-020-78165-w
Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-77907-0
Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life
Cited by: 6
Author(s): Tamsin Lyons, Hanne Jahns, Joseph Brady, Eóin O’Hara, Sinéad M. Waters, David A. Kenny, Evelyn Doyle, Kieran G. Meade
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-78525-6
Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia
Cited by: 11
Author(s): Katrina West, Zoe T. Richards, Euan S. Harvey, Robert Susac, Alicia Grealy, Michael Bunce
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-79055-x
Simultaneous allergic traits in dogs and their owners are associated with living environment, lifestyle and microbial exposures
Cited by: 13
Author(s): Jenni Lehtimäki, Hanna Sinkko, Anna Hielm‐Björkman, Tiina Laatikainen, Lasse Ruokolainen, Hannes Lohi
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-79320-z
Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays)
Cited by: 32
Author(s): Katie Murphy, Joseph Edwards, Katherine Louie, Benjamin P. Bowen, Venkatesan Sundaresan, Trent Northen, Philipp Zerbe
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-80413-y
Preference, performance, and chemical defense in an endangered butterfly using novel and ancestral host plants
Cited by: 5
Author(s): Nathan L. Haan, M. Deane Bowers, Jonathan D. Bakker
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-81507-x
Multiple bacteria associated with the more dysbiotic genitourinary microbiomes in patients with type 2 diabetes mellitus
Cited by: 6
Author(s): Hua Zha, Fengping Liu, Zongxin Ling, Kevin Chang, Jiezuan Yang, Lanjuan Li
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-80982-6
Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants
Cited by: 34
Author(s): Jordan T. Russell, J. Lauren Ruoss, Diomel de la Cruz, Nan Li, Catalina Bazacliu, Laura Patton, Kelley Lobean McKinley, Timothy J. Garrett, Richard A. Polin, Eric W. Triplett, Josef Neu
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-82311-3
Ethnicity influences the gut microbiota of individuals sharing a geographical location: a cross-sectional study from a middle-income country
Cited by: 61
Author(s): Jacky Dwiyanto, Md Hamed Hussain, Daniel D. Reidpath, Kuan Shion Ong, Aisha A Qasim, S. W. H. Lee, S. M. Lee, Su Chern Foo, Chun Wie Chong, Sadequr Rahman
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-82362-6
Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet
Cited by: 11
Author(s): Kelsey E. Witt, Karthik Yarlagadda, Julie M. Allen, Alyssa C. Bader, Mary Simon, Seppe Kuehn, Kelly S. Swanson, Tzu Wen L. Cross, Kristin M. Hedman, Stanley H. Ambrose, Ripan S. Malhi
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-83153-9
Insufficient sampling constrains our characterization of plant microbiomes
Cited by: 11
Author(s): Lorinda Bullington, Ylva Lekberg, Beau Larkin
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-83851-4
Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, and wild type mice
Cited by: 30
Author(s): Payel Kundu, Eileen Ruth S. Torres, Keaton Stagaman, Kristin B. Kasschau, Mariam Okhovat, Sarah Holden, Samantha Ward, Kimberly A. Nevonen, Brett A. Davis, Takashi Saito, Takaomi C. Saido, Lucia Carbone, Thomas J. Sharpton, Jacob Raber
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-84532-y
18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific
Cited by: 4
Author(s): Tsuyoshi Watanabe, Satoshi Nagai, Yoko Kawakami, Taiga Asakura, Jun Kikuchi, Nobuharu Inaba, Yukiko Taniuchi, Hiroaki Kurogi, Seinen Chow, Tsutomu Tomoda, Daisuke Ambe, Daisuke Hasegawa
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-89002-z
Mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients
Cited by: 24
Author(s): William Johnston, Bob T. Rosier, Alejandro Artacho, Michael Paterson, Krystyna Piela, Christopher Delaney, Jason L. Brown, Gordon Ramage, Álex Mira, Shauna Culshaw
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-89658-7
Different land-use types equally impoverish but differentially preserve grassland species and functional traits of spider assemblages
Cited by: 6
Author(s): Carolina M. Pinto, Pamela E. Pairo, M. Isabel Bellocq, Julieta Filloy
Software Mentions: 4
Published: over 3 years ago