cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.7717/peerj.6403

Cover cropping can be a stronger determinant than host crop identity for arbuscular mycorrhizal fungal communities colonizing maize and soybean
Cited by: 28
Author(s): Masao Higo, Yuya Tatewaki, Kento Gunji, Akari Kaseda, Katsunori Isobe
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-018-29971-w

Addition of dairy lipids and probiotic Lactobacillus fermentum in infant formula programs gut microbiota and entero-insular axis in adult minipigs
Cited by: 28
Author(s): Marion Lemaire, Samir Dou, Armelle Cahu, Michèle Formal, Laurence Le Normand, Véronique Rome, Isabelle Nogret, Stéphanie Ferret‐Bernard, Moez Rhimi, Isabelle Cuinet, Cécile Canlet, Marie Tremblay-Franco, Pascale Le Ruyet, Charlotte Baudry, Philippe Gérard, Isabelle Le Huërou‐Luron, Sophie Blat
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.01979

Genomic Comparison and Spatial Distribution of Different Synechococcus Phylotypes in the Black Sea
Cited by: 11
Author(s): Andrea Di Cesare, Nina Dzhembekova, Pedro J. Cabello‐Yeves, Ester M. Eckert, Violeta Slabakova, Nataliya Slabakova, Elisaveta Peneva, Roberto Bertoni, Gianluca Corno, Michaela M. Salcher, Lyudmila Kamburska, Filippo Bertoni, Francisco Rodrı́guez-Valera, Snejana Moncheva, Cristiana Callieri
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-018-32772-w

Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers
Cited by: 13
Author(s): Isidora Echenique‐Subiabre, Anouk Zancarini, Mark W. Heath, Susanna A. Wood, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.8058

Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies
Cited by: 18
Author(s): Rittik Deb, Ashwin Nair, Deepa Agashe
Software Mentions: 4
Published: about 5 years ago

10.3390/ani11061762

The Equine Faecal Microbiota of Healthy Horses and Ponies in The Netherlands: Impact of Host and Environmental Factors
Cited by: 17
Author(s): M. J. P. Theelen, Roosmarijn E C Luiken, Jaap A. Wagenaar, Marianne Sloet van Oldruitenborgh-Oosterbaan, John W. A. Rossen, Aldert Zomer
Software Mentions: 4
Published: over 3 years ago

10.1128/mBio.03281-20

Longitudinal Multi-omics and Microbiome Meta-analysis Identify an Asymptomatic Gingival State That Links Gingivitis, Periodontitis, and Aging
Cited by: 21
Author(s): Shi Huang, Tao He, Yue Feng, Xiang Xu, Lijiang Wang, Pengfei Zhu, Fei Teng, Zheng Sun, Xiaohui Liu, Gongchao Jing, Xiaoquan Su, Lijian Jin, Jiquan Liu, Jian Xu
Software Mentions: 4
Published: over 3 years ago

10.1007/s00248-017-1108-6

Co-Variation of Bacterial and Fungal Communities in Different Sorghum Cultivars and Growth Stages is Soil Dependent
Cited by: 44
Author(s): Thiago R. Schlemper, Johannes A. van Veen, Eiko E. Kuramae
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-34453-0

Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice
Cited by: 64
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Brian D. Piccolo, Kelly E. Mercer, Aline Andres, Keshari Thakali, Kartik Shankar
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-28550-3

Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas
Cited by: 92
Author(s): Bhabatosh Das, Tarini Shankar Ghosh, Saurabh Kedia, Ritika Rampal, Shruti Saxena, Satyabrata Bag, Ridhima Mitra, Mayanka Dayal, Ojasvi Mehta, Adarsh Surendranath, Simon Travis, Prabhanshu Tripathi, G. Balakrish Nair, Vineet Ahuja
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.11096

Measuring change in biological communities: multivariate analysis approaches for temporal datasets with low sample size
Cited by: 9
Author(s): Hannah L. Buckley, Nicola J. Day, Bradley S. Case, Gavin Lear
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-27783-6

Dispersal-competition tradeoff in microbiomes in the quest for land colonization
Cited by: 13
Author(s): Francisco Dini‐Andreote, Jan Dirk van Elsas, Han Olff, Joana Falcão Salles
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-27743-0

Effects of different management regimes on microbial biodiversity in vineyard soils
Cited by: 67
Author(s): Maximilian Hendgen, Björn Hoppe, Johanna Döring, Matthias Friedel, Randolf Kauer, Matthias Frisch, Andreas Dahl, Harald Kellner
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-26423-3

Probiotic supplementation and associated infant gut microbiome and health: a cautionary retrospective clinical comparison
Cited by: 68
Author(s): Candice Quin, Mehrbod Estaki, Deanna M. Vollman, Jacqueline A. Barnett, S K Gill
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0188568

Influence of different feeding regimes on the survival, growth, and biochemical composition of Acropora coral recruits
Cited by: 22
Author(s): Jessica A. Conlan, Craig Humphrey, Andrea Severati, David S. Francis
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-018-24040-8

Soil pH and plant diversity shape soil bacterial community structure in the active layer across the latitudinal gradients in continuous permafrost region of Northeastern China
Cited by: 80
Author(s): Baihui Ren, Yuanman Hu, Baodong Chen, Ying Zhang, Jan Thiele, Ronghua Shi, Miao Liu, Rencang Bu
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.02302

Exploring the Link Between the Geographical Origin of European Fermented Foods and the Diversity of Their Bacterial Communities: The Case of Fermented Meats
Cited by: 35
Author(s): Emiel Niels Van Reckem, Wim Geeraerts, Christina Charmpi, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.8608

Effects of diversity and coalescence of species assemblages on ecosystem function at the margins of an environmental shift
Cited by: 6
Author(s): Jo A. Werba, Alexandra L. Stucy, Ariane L. Peralta, Michael McCoy
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.10284

Trait differences among discrete morphs of a color polymorphic lizard,Podarcis erhardii
Cited by: 12
Author(s): Kinsey M. Brock, Simon Baeckens, Colin M. Donihue, José Martı́n, Panayiotis Pafilis, Danielle L. Edwards
Software Mentions: 4
Published: about 4 years ago

10.3390/biomedicines8040081

A Protocol for the Multi-Omic Integration of Cervical Microbiota and Urine Metabolomics to Understand Human Papillomavirus (HPV)-Driven Dysbiosis
Cited by: 3
Author(s): Nataliya Chorna, Filipa Godoy-Vitorino
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-018-22380-z

Spatio-temporal dynamics of soil bacterial communities as a function of Amazon forest phenology
Cited by: 34
Author(s): Erika Buscardo, József Geml, Steven K. Schmidt, Helena Freitas, Hillândia Brandão da Cunha, László Nagy
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.2975

Variation in species‐level plant functional traits over wetland indicator status categories
Cited by: 19
Author(s): Miles E. McCoy-Sulentic, Thomas E. Kolb, David M. Merritt, Emily C. Palmquist, Barbara E. Ralston, Daniel A. Sarr
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-22629-7

A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America
Cited by: 33
Author(s): Homero San‐Juan‐Vergara, Eduardo Zurek, Nadim J. Ajami, Christian Mogollon, Mario Peña, Iván Portnoy, Jorge I. Vélez, Christian Cadena-Cruz, Yirys Díaz-Olmos, Leidy Hurtado-Gómez, Silvana Sanchez-Sit, Danitza Hernández, Irina Urruchurtu, Pierina Di-Ruggiero, Ella Guardo-García, Nury Torres, Oscar M. Vidal, Diego Viasus, Joseph F. Petrosino, Guillermo Cervantes-Acosta
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.2367

Tree phyllosphere bacterial communities: exploring the magnitude of intra- and inter-individual variation among host species
Cited by: 74
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 4
Published: over 8 years ago

10.1128/mBio.02901-19

Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats
Cited by: 176
Author(s): Se Jin Song, Jon G. Sanders, Frédéric Delsuc, Jessica L. Metcalf, Katherine R. Amato, Michael W. Taylor, Florent Mazel, Holly L. Lutz, Kevin Winker, Gary R. Graves, Gregory Humphrey, Jack A. Gilbert, Shannon J. Hackett, Kevin P. White, Heather Skeen, Sarah M. Kurtis, Jack J. Withrow, Thomas Braile, Matthew J. Miller, Kevin G. McCracken, James M. Maley, Vanessa O. Ezenwa, Allison Williams, Jessica M. Blanton, Valerie J. McKenzie, Rob Knight
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-017-18756-2

Metagenomic and metabolomic analyses unveil dysbiosis of gut microbiota in chronic heart failure patients
Cited by: 199
Author(s): Xiaojie Cui, Lei Ye, Jing Li, Ling Jin, Wenjie Wang, Shuangyue Li, Minghui Bao, Shouling Wu, Lifeng Li, Bin Geng, Xin Zhou, Jian Zhang, Jun Cai
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.2698

Anthropogenic noise changes arthropod abundances
Cited by: 46
Author(s): Jessie P. Bunkley, Christopher J. W. McClure, Akito Y. Kawahara, Clinton D. Francis, Jesse R. Barber
Software Mentions: 4
Published: over 7 years ago

10.1186/s12862-017-0885-3

Grandparental immune priming in the pipefish Syngnathus typhle
Cited by: 39
Author(s): Anne Beemelmanns, Olivia Roth
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-20347-8

Characterization of soil bacterial, archaeal and fungal communities inhabiting archaeological human-impacted layers at Monte Iato settlement (Sicily, Italy)
Cited by: 20
Author(s): J.A. Siles, Birgit Öhlinger, Tomáš Cajthaml, Erich Kistler, Rosa Margesin
Software Mentions: 4
Published: almost 7 years ago

10.1111/1751-7915.13578

Co‐occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site
Cited by: 75
Author(s): Jesse C. Thomas, Adelumola Oladeinde, Troy J. Kieran, John W. Finger, Natalia J. Bayona‐Vásquez, John C. Cartee, James C. Beasley, John C. Seaman, J Vuan McArthur, Olin E. Rhodes, Travis C. Glenn
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2019.01850

Disease Specific Bacterial Communities in a Coralline Algae of the Northwestern Mediterranean Sea: A Combined Culture Dependent and -Independent Approach
Cited by: 13
Author(s): Gaëlle Quéré, Laurent Intertaglia, Claude Payri, Pierre E. Galand
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.6989

Effects of maternal genotypic identity and genetic diversity of the red mangrove Rhizophora mangle on associated soil bacterial communities: A field‐based experiment
Cited by: 9
Author(s): Hayley Craig, John Paul Kennedy, Donna J. Devlin, Richard D. Bardgett, Jennifer K. Rowntree
Software Mentions: 4
Published: about 4 years ago

10.1186/s12862-019-1432-1

The multifactorial nature of beak and skull shape evolution in parrots and cockatoos (Psittaciformes)
Cited by: 35
Author(s): Jen A. Bright, Jesús Marugán‐Lobón, Emily J. Rayfield, Samuel N. Cobb
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-14978-6

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
Cited by: 72
Author(s): Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, Hiroki Yamanaka
Software Mentions: 4
Published: about 7 years ago

10.1128/mSphere.00451-20

Assessing the Variation within the Oral Microbiome of Healthy Adults
Cited by: 43
Author(s): Jacob T. Nearing, Vanessa DeClercq, Johan Van Limbergen, Morgan G. I. Langille
Software Mentions: 4
Published: about 4 years ago

10.7717/peerj.9139

Drivers of beta diversity in modern and ancient reef-associated soft-bottom environments
Cited by: 5
Author(s): Vanessa Julie Roden, Martin Zuschin, Alexander Nützel, Imelda M. Hausmann, Wolfgang Kiessling
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2019.02685

Minor Effect of Antibiotic Pre-treatment on the Engraftment of Donor Microbiota in Fecal Transplantation in Mice
Cited by: 36
Author(s): Tobias Freitag, Anna Hartikainen, Hanne Jouhten, Cecilia Sahl, Seppo Meri, Veli-Jukka Anttila, Eero Mattila, Perttu Arkkila, Jonna Jalanka, Reetta Satokari
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.8492

Influence of host phylogeny, geographical location and seed harvesting diet on the bacterial community of globally distributed Pheidole ants
Cited by: 9
Author(s): Carla Braga Martins, Corrie S. Moreau
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.6845

Aquatic beetles influence colonization of disparate taxa in small lentic systems
Cited by: 10
Author(s): Matthew R. Pintar, William J. Resetarits
Software Mentions: 4
Published: about 4 years ago

10.1002/ece3.5575

Protection from illegal fishing and shark recovery restructures mesopredatory fish communities on a coral reef
Cited by: 18
Author(s): Conrad W. Speed, Matthew J. Rees, Katherine Cure, Brigit I. Vaughan, Mark G. Meekan
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7184

Soil physicochemical properties drive the variation in soil microbial communities along a forest successional series in a degraded wetland in northeastern China
Cited by: 27
Author(s): Xin Sui, Rongtao Zhang, Beat Frey, Libin Yang, Yingnan Liu, Hongwei Ni, Mai‐He Li
Software Mentions: 4
Published: almost 4 years ago

10.3390/metabo10120518

Using Community Science to Reveal the Global Chemogeography of River Metabolomes
Cited by: 21
Author(s): Vanessa Garayburu‐Caruso, Robert Danczak, James C. Stegen, Lupita Renteria, Marcy L. McCall, Amy Goldman, Rosalie K. Chu, Jason Toyoda, Charles T. Resch, Joshua M. Torgeson, Jacqueline Wells, Sarah Fansler, Swatantar Kumar, Emily B. Graham
Software Mentions: 4
Published: almost 4 years ago

10.1002/ece3.3248

Spatial patterns of hypolithic cyanobacterial diversity in Northern Australia
Cited by: 5
Author(s): Keith A. Christian, Mirjam Kaestli, Karen S. Gibb
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-12265-y

Nutrient quality of vertebrate dung as a diet for dung beetles
Cited by: 46
Author(s): Kevin Frank, Adrian Brückner, Andrea Hilpert, Michael Heethoff, Nico Blüthgen
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2020.00380

Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities
Cited by: 32
Author(s): Emilie Macke, Martijn Callens, François Massol, Isabel Vanoverberghe, Luc De Meester, Ellen Decaestecker
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.9367

Integrating population genetic structure, microbiome, and pathogens presence data in Dermacentor variabilis
Cited by: 7
Author(s): Paula Lado, Bo Liu, Michelle E. J. Allerdice, Christopher D. Paddock, Sandor E. Karpathy, Hans Klompen
Software Mentions: 4
Published: over 4 years ago

10.1093/aobpla/plab011

Presence of a dominant native shrub is associated with minor shifts in the function and composition of grassland communities in a northern savannah
Cited by: 0
Author(s): Isaac Peetoom Heida, Charlotte Brown, Margarete A Dettlaff, Kenneth Oppon, James Cahill
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13568-020-01119-y

Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
Cited by: 23
Author(s): Shenzheng Zeng, Sukontorn Khoruamkid, Warinphorn Kongpakdee, Dongdong Wei, Lingfei Yu, Hao Wang, Zhao‐Peng Deng, Shaoping Weng, Zhijian Huang, Jianguo He, Kriengkrai Satapornvanit
Software Mentions: 4
Published: about 4 years ago

10.1186/s13568-021-01225-5

Manipulating the soil microbiomes during a community recovery process with plant beneficial species for the suppression of Fusarium wilt of watermelon
Cited by: 14
Author(s): Xu Zhang, Cong Xue, D. C. Fang, Xiangming He, Mengyu Wei, Chenjin Zhuo, Junyao Jin, Biao Shen, Rong Li, Ning Ling, Qirong Shen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0144702

Archaeal and Bacterial Communities Associated with the Surface Mucus of Caribbean Corals Differ in Their Degree of Host Specificity and Community Turnover Over Reefs
Cited by: 23
Author(s): Pedro R. Frade, Katharina Roll, Kristin Bergauer, Gerhard J. Herndl
Software Mentions: 4
Published: almost 9 years ago

10.3390/ani11051372

Choice of Commercial DNA Extraction Method Does Not Affect 16S Sequencing Outcomes in Cloacal Swabs
Cited by: 0
Author(s): Emily Van Syoc, Natália Carrillo Gaeta, Erika Ganda
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-017-08109-4

Cross-scale habitat structure driven by coral species composition on tropical reefs
Cited by: 35
Author(s): Laura E. Richardson, Nicholas A. J. Graham, Andrew S. Hoey
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.3288

Marine dock pilings foster diverse, native cryptobenthic fish assemblages across bioregions
Cited by: 20
Author(s): Simon J. Brandl, Jordan M. Casey, Nancy Knowlton, J. Emmett Duffy
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.7501

Improvement of subsoil physicochemical and microbial properties by short-term fallow practices
Cited by: 4
Author(s): Guangyu Li, Walter Timo de Vries, Cifang Wu, Hongyu Zheng
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2016.00403

Spatial and Temporal Variation of Cultivable Communities of Co-occurring Endophytes and Pathogens in Wheat
Cited by: 58
Author(s): Morgane Comby, Sandrine Lacoste, Fabienne Baillieul, Camille Profizi, Joëlle Dupont
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.6529

In the foothill zone—Sabanejewia balcanica(Karaman 1922), in the lowland zone—Sabanejewia bulgarica(Drensky, 1928): Myth or reality?
Cited by: 6
Author(s): Peter Križek, Jan Mendel, Jakub Fedorčák, Ján Koščo
Software Mentions: 4
Published: over 4 years ago

10.1186/s40104-021-00617-8

Effects of supplemental xylanase and xylooligosaccharides on production performance and gut health variables of broiler chickens
Cited by: 27
Author(s): Amit Kumar Singh, Birendra Mishra, M.R. Bedford
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0215767

Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities
Cited by: 11
Author(s): François Thomas, James T. Morris, Cathleen Wigand, Stefan M. Sievert
Software Mentions: 4
Published: over 5 years ago

10.3390/membranes10120415

Reducing the Impacts of Biofouling in RO Membrane Systems through In Situ Low Fluence Irradiation Employing UVC-LEDs
Cited by: 9
Author(s): Philipp Sperle, Christian Wurzbacher, Jörg E. Drewes, Bertram Skibinski
Software Mentions: 4
Published: almost 4 years ago

10.1002/ece3.4742

Assessing eukaryotic biodiversity in the Florida Keys National Marine Sanctuary through environmental DNA metabarcoding
Cited by: 45
Author(s): Natalie A. Sawaya, Anni Djurhuus, Collin J. Closek, Megan Hepner, Emily Olesin, Lindsey A. Visser, Christopher R. Kelble, Katherine A. Hubbard, Mya Breitbart
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-10560-2

The molecular basis of differential morphology and bleaching thresholds in two morphs of the coral Pocillopora acuta
Cited by: 13
Author(s): Hillary A. Smith, Hannah E. Epstein, Gergely Torda
Software Mentions: 4
Published: about 7 years ago

10.1186/s42523-021-00120-5

Characterization of oral and cloacal microbial communities of wild and rehabilitated loggerhead sea turtles (Caretta caretta)
Cited by: 7
Author(s): Klara Filek, Adriana Trotta, Romana Gračan, Antonio Di Bello, Marialaura Corrente, Sunčica Bosak
Software Mentions: 4
Published: about 3 years ago

10.1186/s40104-020-00459-w

Eggshell and environmental bacteria contribute to the intestinal microbiota of growing chickens
Cited by: 33
Author(s): Joel J. Maki, Elizabeth Bobeck, Matthew J. Sylte, Torey Looft
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.4600

GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data
Cited by: 146
Author(s): Li Chen, James Reeve, Lujun Zhang, Shengbing Huang, Xuefeng Wang, Jun Chen
Software Mentions: 4
Published: over 6 years ago

10.15252/emmm.201707882

Household triclosan and triclocarban effects on the infant and maternal microbiome
Cited by: 67
Author(s): Jessica V. Ribado, Catherine Ley, Thomas D. Haggerty, Е. И. Ткаченко, Ami S. Bhatt, Julie Parsonnet
Software Mentions: 4
Published: about 7 years ago

10.1002/eap.2089

Local‐ and landscape‐scale variables shape insect diversity in an urban biodiversity hot spot
Cited by: 36
Author(s): Benjamin J. Adams, Enjie Li, Christine A. Bahlai, Emily K. Meineke, Terrence P. McGlynn, Brian V. Brown
Software Mentions: 4
Published: over 4 years ago

10.3390/diagnostics11091622

Alteration in Nasopharyngeal Microbiota Profile in Aged Patients with COVID-19
Cited by: 9
Author(s): Ravindra Kolhe, Nikhil Sahajpal, Sagar Vyavahare, Akhilesh S. Dhanani, Satish Adusumilli, Sudha Ananth, Ashis Mondal, Gregory Taylor Patterson, Sandeep Kumar, Amyn M. Rojiani, Carlos M. Isales, Sadanand Fulzele
Software Mentions: 4
Published: about 3 years ago

10.1186/s40104-020-00498-3

Dietary Bacillus spp. enhanced growth and disease resistance of weaned pigs by modulating intestinal microbiota and systemic immunity
Cited by: 34
Author(s): Yijie He, Cynthia Jinno, Kwang‐Wook Kim, Zhaohai Wu, Bin Tan, Xunde Li, Rose Whelan, Yanhong Liu
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2021.627539

Toward Best Practice in Livestock Microbiota Research: A Comprehensive Comparison of Sample Storage and DNA Extraction Strategies
Cited by: 10
Author(s): Gertrude Wegl, Nikolaus Grabner, Andreas Köstelbauer, Viviana Klose, Mahdi Ghanbari
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40104-021-00545-7

Evaluation of curcumin and copper acetate against Salmonella Typhimurium infection, intestinal permeability, and cecal microbiota composition in broiler chickens
Cited by: 20
Author(s): Anaisa A. Leyva-Diaz, Daniel Hernández-Patlán, Bruno Solís-Cruz, Bishnu Adhikari, Young Min Kwon, Juan D. Latorre, Xóchitl Hernández-Velasco, Benjamín Fuente-Martínez, Billy M. Hargis, Raquel López‐Arellano, Guillermo Téllez–Isaías
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12885-020-6654-5

Temporal changes in gut microbiota profile in children with acute lymphoblastic leukemia prior to commencement-, during-, and post-cessation of chemotherapy
Cited by: 36
Author(s): Ling Ling Chua, Reena Rajasuriar, Yvonne Ai Lian Lim, Yin Ling Woo, P’ng Loke, Hany Ariffin
Software Mentions: 4
Published: over 4 years ago

10.1093/icb/icz007

Leukocyte Profiles Reflect Geographic Range Limits in a Widespread Neotropical Bat
Cited by: 22
Author(s): Daniel J. Becker, Cecilia Nachtmann, Hernán Darío Argibay, Gonzalo Núñez, Marina Escalera-Zamudio, Jorge Carrera, Carlos Tello, Erik Winiarski, Alex D. Greenwood, Maria L. Méndez-Ojeda, Elizabeth Loza-Rubio, Anne Lee, Benoı̂t de Thoisy, Gábor Á. Czirják, Raina K. Plowright, Sonia Altizer, Daniel G. Streicker
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.5464

Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association
Cited by: 18
Author(s): Juliane Hartke, Philipp P. Sprenger, Jacqueline Sahm, Helena Winterberg, Jérôme Orivel, Hannes Baur, Till Beuerle, Thomas Schmitt, Barbara Feldmeyer, Florian Menzel
Software Mentions: 4
Published: over 5 years ago

10.1007/s00338-017-1561-1

Palaeoecological records of coral community development on a turbid, nearshore reef complex: baselines for assessing ecological change
Cited by: 16
Author(s): Jamie A. Johnson, Chris T. Perry, Scott G. Smithers, Kyle M. Morgan, Nadiezhda Santodomingo, Kenneth G. Johnson
Software Mentions: 4
Published: over 7 years ago

10.1186/s13054-021-03623-4

Staphylococcus aureus ventilator-associated pneumonia in patients with COVID-19: clinical features and potential inference with lung dysbiosis
Cited by: 36
Author(s): Gennaro De Pascale, Flavio De Maio, Simone Carelli, Giulia De Angelis, Margherita Cacaci, Luca Montini, Giuseppe Bello, Salvatore Lucio Cutuli, Gabriele Pintaudi, Eloisa Sofia Tanzarella, Rikardo Xhemalaj, Domenico Luca Grieco, Mario Tumbarello, Maurizio Sanguinetti, Brunella Posteraro, Massimo Antonelli
Software Mentions: 4
Published: over 3 years ago

10.3390/insects10120446

The Response of Neotropical Dragonflies (Insecta: Odonata) to Local and Regional Abiotic Factors in Small Streams of the Amazon
Cited by: 21
Author(s): José Max Barbosa de Oliveira, Karina Dias-Silva, Maria Alexandra Teodósio, Leandro Juen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-020-00997-5

Rhizosphere community selection reveals bacteria associated with reduced root disease
Cited by: 96
Author(s): Chuntao Yin, Juan M. Casa Vargas, Daniel Schlatter, Christina H. Hagerty, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 4
Published: over 3 years ago

10.3390/insects11010026

How Bees Respond Differently to Field Margins of Shrubby and Herbaceous Plants in Intensive Agricultural Crops of the Mediterranean Area
Cited by: 11
Author(s): J. Sánchez, Aline Carrasco, Michelangelo La Spina, María Pérez‐Marcos, F. J. Ortiz-Sánchez
Software Mentions: 4
Published: almost 5 years ago

10.3390/insects12010011

Olfactory Choice for Decomposition Stage in the Burying Beetle Nicrophorus vespilloides: Preference or Aversion?
Cited by: 4
Author(s): Pablo J. Delclós, Tammy L. Bouldin, Jeffery K. Tomberlin
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0231122

Direct and indirect effects of land-use intensity on plant communities across elevation in semi-natural grasslands
Cited by: 8
Author(s): Oksana Y. Buzhdygan, Britta Tietjen, Svitlana Rudenko, Volodymyr A. Nikorych, Jana S. Petermann
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2020.554105

Diverse Bacterial Communities From Qaidam Basin of the Qinghai–Tibet Plateau: Insights Into Variations in Bacterial Diversity Across Different Regions
Cited by: 6
Author(s): Wei Zhang, Ali Bahadur, Gaosen Zhang, Binglin Zhang, Xiukun Wu, Tuo Chen, Guangxiu Lu
Software Mentions: 4
Published: about 4 years ago

10.7717/peerj.2768

Diversity, taxonomic composition, and functional aspects of fungal communities in living, senesced, and fallen leaves at five sites across North America
Cited by: 44
Author(s): Jana M. U’Ren, A. Elizabeth Arnold
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.7295

Shared mycorrhizae but distinct communities of other root-associated microbes on co-occurring native and invasive maples
Cited by: 7
Author(s): Tonia DeBellis, Steven W. Kembel, Jean‐Philippe Lessard
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0157442

Dung Beetles along a Tropical Altitudinal Gradient: Environmental Filtering on Taxonomic and Functional Diversity
Cited by: 90
Author(s): Cássio Alencar Nunes, Rodrigo Fagundes Braga, José Eugênio Côrtes Figueira, Frederico S. Neves, G. Wilson Fernandes
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.4705

DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
Cited by: 149
Author(s): Owen S. Wangensteen, Creu Palacín, Magdalena Guardiola, Xavier Turon
Software Mentions: 4
Published: over 6 years ago

10.1186/s13099-014-0039-8

Probiotics and virulent human rotavirus modulate the transplanted human gut microbiota in gnotobiotic pigs
Cited by: 44
Author(s): Husen Zhang, Haifeng Wang, Megan Shepherd, Ke Wen, Guohua Li, Xing-Dong Yang, Jacob Kocher, Ernawati Arifin Giri-Rachman, Allan W. Dickerman, Robert E. Settlage, Lijuan Yuan
Software Mentions: 4
Published: about 10 years ago

10.3390/ani9121063

Effect of Supplementing Hydrolysable Tannins to a Grower–Finisher Diet Containing Divergent PUFA Levels on Growth Performance, Boar Taint Levels in Back Fat and Intestinal Microbiota of Entire Males
Cited by: 24
Author(s): M. Tretola, Federica Maghin, Paolo Silacci, S. Ampuero, Giuseppe Bee
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0187044

Rapid regrowth and detection of microbial contaminants in equine fecal microbiome samples
Cited by: 19
Author(s): Kalie F. Beckers, Christopher Schulz, Gary W. Childers
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-78165-w

Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 4 years ago

10.1080/19490976.2021.1936378

Effect of COVID-19 precautions on the gut microbiota and nosocomial infections
Cited by: 9
Author(s): Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, Harika Nalluri, Thomas Kaiser, Shernan G. Holtan, Alexander Khoruts, Daniel J. Weisdorf, Christopher Staley
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0229745

Changes in the gut microbiota of mice orally exposed to methylimidazolium ionic liquids
Cited by: 9
Author(s): Gregory R. Young, Tarek M. Abdelghany, Alistair C. Leitch, Michael Dunn, Peter G. Blain, Clare Lanyon, Matthew C. Wright
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232437

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations
Cited by: 3
Author(s): Regina L. Wilpiszeski, Caitlin M. Gionfriddo, Ann M. Wymore, Ji Won Moon, Kenneth A. Lowe, Mircea Podar, Sa’ad Rafie, Matthew W. Fields, Terry C. Hazen, Xiaoxuan Ge, Farris L. Poole, Michael W. W. Adams, Romy Chakraborty, Yuhang Fan, Joy D. Van Nostrand, Jizhong Zhou, Adam P. Arkin, Dwayne A. Elias
Software Mentions: 4
Published: about 4 years ago

10.3389/fvets.2020.00616

An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time
Cited by: 10
Author(s): Sara E. Bell, Andrea K. Nash, Brian M. Zanghi, Cynthia M. Otto, Erin Perry
Software Mentions: 4
Published: about 4 years ago

10.3390/pathogens9070524

The Effect of Natural Feline Coronavirus Infection on the Host Immune Response: A Whole-Transcriptome Analysis of the Mesenteric Lymph Nodes in Cats with and without Feline Infectious Peritonitis
Cited by: 5
Author(s): Alexandra Malbon, Giancarlo Russo, Carole Burgener, Emi Barker, Marina L. Meli, Séverine Tasker, Anja Kipar
Software Mentions: 4
Published: over 4 years ago

10.3390/pathogens9090723

Differences in the Endophytic Microbiome of Olive Cultivars Infected by Xylella fastidiosa across Seasons
Cited by: 35
Author(s): Annalisa Giampetruzzi, Paula Baptista, Massimiliano Morelli, Cristina Cameirão, Teresa Lino-Neto, Daniela Costa, Giusy D’Attoma, Raied Abou Kubaa, Giuseppe Altamura, María Saponari, José Alberto Pereira, P. Saldarelli
Software Mentions: 4
Published: about 4 years ago

10.1080/19490976.2021.1875797

Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Cited by: 6
Author(s): Nishat Tasnim, Candice Quin, S K Gill, Chunping Dai, Miranda M. Hart, Deanna L. Gibson
Software Mentions: 4
Published: almost 4 years ago

10.1007/s13592-020-00758-1

Urbanisation is associated with reduced Nosema sp. infection, higher colony strength and higher richness of foraged pollen in honeybees
Cited by: 14
Author(s): Ash E. Samuelson, Richard J. Gill, Ellouise Leadbeater
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.579072

Soil Fungal Community Composition, Not Assembly Process, Was Altered by Nitrogen Addition and Precipitation Changes at an Alpine Steppe
Cited by: 12
Author(s): Yuanming Xiao, Changbin Li, Yang Yang, Yunfeng Peng, Yuanhe Yang, Guoying Zhou
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2021.643731

Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives
Cited by: 11
Author(s): Rowena Hill, Theo Llewellyn, Elizabeth Downes, Joseph Oddy, Catriona MacIntosh, Simon Kallow, Bart Panis, John B. Dickie, Ester Gaya
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms9020411

Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable
Cited by: 12
Author(s): Mark McCauley, Marlène Chiarello, Carla L. Atkinson, Colin R. Jackson
Software Mentions: 4
Published: almost 4 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292