cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1186/s40793-019-0346-2

Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apple plantlets grown in soils affected by replant disease
Cited by: 20
Author(s): Viviane Radl, Jana Barbro Winkler, Susanne Kublik, Luhua Yang, Traud Winkelmann, Gisle Vestergaard, Peter Schröder, Michael Schloter
Software Mentions: 4
Published: about 5 years ago

10.1186/s40793-020-00364-9

Trichomes form genotype-specific microbial hotspots in the phyllosphere of tomato
Cited by: 12
Author(s): Peter Kusstatscher, Wisnu Adi Wicaksono, Alessandro Bergna, Tomislav Cernava, Nick Bergau, Alain Tissier, Bettina Hause, Gabriele Berg
Software Mentions: 4
Published: about 4 years ago

10.1111/eva.13079

Host plants and <i>Wolbachia</i> shape the population genetics of sympatric herbivore populations
Cited by: 11
Author(s): Zhen F. Fu, Amanda R. Meier, Brendan Epstein, Alan O. Bergland, Carmen I. Castillo Carrillo, William C. Cooper, Regina K. Cruzado, David Horton, Andrew S. Jensen, Joanna L. Kelley, Arash Rashed, Stuart R. Reitz, Silvia I. Rondon, Jenita Thinakaran, Erik J. Wenninger, Carrie H. Wohleb, David W. Crowder, William E. Snyder
Software Mentions: 4
Published: about 4 years ago

10.1002/evl3.176

Rapid local adaptation linked with phenotypic plasticity
Cited by: 13
Author(s): Syuan‐Jyun Sun, Andrew M. Catherall, Sónia Pascoal, Benjamin J. M. Jarrett, Sara Miller, Michael J. Sheehan, Rebecca M. Kilner
Software Mentions: 4
Published: over 4 years ago

10.1038/s12276-021-00627-6

Gut microbiota restoration through fecal microbiota transplantation: a new atopic dermatitis therapy
Cited by: 36
Author(s): Jong-Hwa Kim, Ki‐Young Kim, Wonyong Kim
Software Mentions: 4
Published: over 3 years ago

10.1093/femsec/fiab134

Indicative bacterial communities and taxa of disease-suppressing and growth-promoting composts and their associations to the rhizoplane
Cited by: 2
Author(s): Johanna Mayerhofer, Barbara Thuerig, T. Oberhaensli, Eileen Enderle, Stefanie Lutz, Christian H. Ahrens, Jacques Fuchs, Franco Widmer
Software Mentions: 4
Published: about 3 years ago

10.3389/fmicb.2021.666584

Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation
Cited by: 63
Author(s): Anna Christine Trego, Paul G. McAteer, Corine Nzeteu, Thérèse Mahony, Florence Abram, Umer Zeeshan Ijaz, Vincent O’Flaherty
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2020.00641

Functional Analysis of Sugars in Modulating Bacterial Communities and Metabolomics Profiles of Medicago sativa Silage
Cited by: 14
Author(s): Bing Wang, Run Gao, Zhaohai Wu, Zhu Yu
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.00129

Broad and Fine Scale Variability in Bacterial Diversity and Cyanotoxin Quotas in Benthic Cyanobacterial Mats
Cited by: 8
Author(s): Georgia Thomson‐Laing, Jonathan Puddick, Olivier Laroche, Samantha Fulton, Konstanze Steiner, Mark W. Heath, Susanna A. Wood
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.689674

Adaptation of Soil Fungal Community Structure and Assembly to Long- Versus Short-Term Nitrogen Addition in a Tropical Forest
Cited by: 15
Author(s): Jinhong He, Shuo Jiao, Xiangping Tan, Hui Wei, Xiaomin Ma, Yonggang Nie, Juxiu Liu, Xiankai Lu, Jiangming Mo, Weijun Shen
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2017.02099

Cyanobacteria and Alphaproteobacteria May Facilitate Cooperative Interactions in Niche Communities
Cited by: 32
Author(s): Marc W. Van Goethem, Thulani P. Makhalanyane, Don A. Cowan, Ángel Valverde
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2019.01576

Fecal Microbiota Transplant From Highly Feed Efficient Donors Affects Cecal Physiology and Microbiota in Low- and High-Feed Efficient Chickens
Cited by: 30
Author(s): Barbara U. Metzler‐Zebeli, Sina-Catherine Siegerstetter, Elizabeth Magowan, Peadar G. Lawlor, Niamh O’Connell, Qendrim Zebeli
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.615481

Microbial Flow Within an Air-Phyllosphere-Soil Continuum
Cited by: 19
Author(s): Shu‐Yi‐Dan Zhou, Hu Li, Madeline Giles, Roy Neilson, Xiao‐Ru Yang, Jian‐Qiang Su
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2021.632947

Understanding Biofilm Formation in Ecotoxicological Assays With Natural and Anthropogenic Particulates
Cited by: 7
Author(s): Elena Gorokhova, Asa Motiei, Rehab El-Shehawy
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.01245

Outbreaks of an Emerging Viral Disease Covary With Differences in the Composition of the Skin Microbiome of a Wild United Kingdom Amphibian
Cited by: 23
Author(s): Lewis J. Campbell, Trenton W. J. Garner, Kevin Hopkins, Amber Gieselle Firefly Griffiths, Xavier A. Harrison
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.576763

Responses of Soil Fungal Communities to Lime Application in Wheat Fields in the Pacific Northwest
Cited by: 5
Author(s): Chuntao Yin, Daniel Schlatter, Duncan R. Kroese, Timothy C. Paulitz, Christina H. Hagerty
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2018.00169

Compost Addition Enhanced Hyphal Growth and Sporulation of Arbuscular Mycorrhizal Fungi without Affecting Their Community Composition in the Soil
Cited by: 48
Author(s): Wei Yang, Song Gu, Ying Xin, Ayodeji Bello, Wanqing Sun, Xiuhong Xu
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2019.00599

Microbiota of the Gut-Lymph Node Axis: Depletion of Mucosa-Associated Segmented Filamentous Bacteria and Enrichment of Methanobrevibacter by Colistin Sulfate and Linco-Spectin in Pigs
Cited by: 11
Author(s): Benjamin Zwirzitz, Beate Pinior, Barbara U. Metzler‐Zebeli, Monika Handler, Kristina Gense, Christian Knecht, Andrea Ladinig, Monika Dzieciol, Stefanie U. Wetzels, Martin Wagner, Stephan Schmitz‐Esser, Evelyne Mann
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.00393

The Computational Diet: A Review of Computational Methods Across Diet, Microbiome, and Health
Cited by: 30
Author(s): Ameen Eetemadi, Navneet Rai, Beatriz Merchel Piovesan Pereira, Minseung Kim, Harold H. Schmitz, Ilias Tagkopoulos
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.580363

Compositions and Co-occurrence Patterns of Bacterial Communities Associated With Polymer- and ASP-Flooded Petroleum Reservoir Blocks
Cited by: 6
Author(s): Guoling Ren, Jinlong Wang, Lei Qu, Wei Li, Min Hu, Lihong Bian, Yiting Zhang, Jing Liu, Xumou Dou, Xinhong Chen, Lulu Bai, Yue Li
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2018.03203

Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial Diversity
Cited by: 61
Author(s): Nicola Vitulo, Wilson José Fernandes Lemos, Matteo Calgaro, Marco Confalone, Giovanna E. Felis, Giacomo Zapparoli, Tiziana Nardi
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2018.03344

Long Term Diversity and Distribution of Non-photosynthetic Cyanobacteria in Peri-Alpine Lakes
Cited by: 36
Author(s): Marie‐Ève Monchamp, Piet Spaak, Francesco Pomati
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2018.02878

Bacterial Diversity Associated With the Rhizosphere and Endosphere of Two Halophytes: Glaux maritima and Salicornia europaea
Cited by: 51
Author(s): Kosuke Yamamoto, Yuh Shiwa, Taichiro Ishige, Hikaru Sakamoto, Keisuke Tanaka, Makoto Uchino, Naoto Tanaka, Suguru Oguri, Hiromasa Saitoh, Seiya Tsushima
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.00982

Functional and Structural Responses of Arctic and Alpine Soil Prokaryotic and Fungal Communities Under Freeze-Thaw Cycles of Different Frequencies
Cited by: 27
Author(s): Carla Perez-Mon, Beat Frey, Aline Frossard
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2021.703014

Distinct Endophytic Bacterial Communities Inhabiting Seagrass Seeds
Cited by: 14
Author(s): Flavia Tarquinio, Océane Attlan, Mathew A. Vanderklift, Oliver Berry, Andrew Bissett
Software Mentions: 4
Published: about 3 years ago

10.3389/fmicb.2020.01979

Genomic Comparison and Spatial Distribution of Different Synechococcus Phylotypes in the Black Sea
Cited by: 11
Author(s): Andrea Di Cesare, Nina Dzhembekova, Pedro J. Cabello‐Yeves, Ester M. Eckert, Violeta Slabakova, Nataliya Slabakova, Elisaveta Peneva, Roberto Bertoni, Gianluca Corno, Michaela M. Salcher, Lyudmila Kamburska, Filippo Bertoni, Francisco Rodrı́guez-Valera, Snejana Moncheva, Cristiana Callieri
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2017.00340

Clustering of Subgingival Microbiota Reveals Microbial Disease Ecotypes Associated with Clinical Stages of Periodontitis in a Cross-Sectional Study
Cited by: 33
Author(s): Sébastien Boutin, Daniel Hagenfeld, Heiko Zimmermann, Nihad El Sayed, Tanja Höpker, Halina Greiser, Heiko Becher, Ti‐Sun Kim, Alexander H. Dalpke
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.02302

Exploring the Link Between the Geographical Origin of European Fermented Foods and the Diversity of Their Bacterial Communities: The Case of Fermented Meats
Cited by: 35
Author(s): Emiel Niels Van Reckem, Wim Geeraerts, Christina Charmpi, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.00873

Long-Term Stochasticity Combines With Short-Term Variability in Assembly Processes to Underlie Rice Paddy Sustainability
Cited by: 7
Author(s): Wenjing Liu, Emily B. Graham, Linghao Zhong, Jianwei Zhang, Shijie Li, Xiangui Lin, Youzhi Feng
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.01491

Thinning Partially Mitigates the Impact of Atlantic Forest Replacement by Pine Monocultures on the Soil Microbiome
Cited by: 13
Author(s): Carolina Paola Trentini, Paula I. Campanello, Mariana Villagra, Julian A. Ferreras, Martin Hartmann
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.597944

Wine Terroir and the Soil Bacteria: An Amplicon Sequencing–Based Assessment of the Barossa Valley and Its Sub-Regions
Cited by: 8
Author(s): Jia Zhou, Timothy R. Cavagnaro, Roberta De Bei, Tiffanie M. Nelson, J. Stephen, Andrew Metcalfe, Matthew Gilliham, James Breen, Cassandra Collins, Carlos M. Rodríguez López
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2021.684903

Periphytic Biofilm Formation on Natural and Artificial Substrates: Comparison of Microbial Compositions, Interactions, and Functions
Cited by: 15
Author(s): Lingzhan Miao, Chengqian Wang, Tanveer M. Adyel, Jiaqi Zhao, Ning Yan, Jun Wu, Jun Hou
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.00006

Fungal Biodiversity of the Most Common Types of Polish Soil in a Long-Term Microplot Experiment
Cited by: 38
Author(s): Jarosław Grządziel, Anna Gałązka
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.02033

The Low-Diversity Fecal Microbiota of the Critically Endangered Kākāpō Is Robust to Anthropogenic Dietary and Geographic Influences
Cited by: 14
Author(s): Elena K. Perry, Andrew Digby, Michael W. Taylor
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2017.00719

Plant Communities Rather than Soil Properties Structure Arbuscular Mycorrhizal Fungal Communities along Primary Succession on a Mine Spoil
Cited by: 66
Author(s): Claudia Krüger, Petr Kohout, Martina Janoušková, David Püschel, Jan Frouz, Jana Rydlová
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2021.639997

Identifying the Specific Root Microbiome of the Hyperaccumulator Noccaea brachypetala Growing in Non-metalliferous Soils
Cited by: 0
Author(s): Soledad Martos, John Danku, Laura Pérez‐Martín, Mercè Llugany, Catalina Cabot, Charlotte Poschenrieder
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.01142

The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards
Cited by: 103
Author(s): Carmen Berlanas, Mónica Berbegal, Elena González-Peñas, Meriem Laidani, José Félix Cibriain, Ana Sagües, David Gramaje
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.01763

Feeding Bugs to Bugs: Edible Insects Modify the Human Gut Microbiome in an in vitro Fermentation Model
Cited by: 14
Author(s): Wayne Young, Sai Krishna Arojju, M.R. McNeill, Elizabeth A. Rettedal, Jessica Gathercole, N.L. Bell, Penny R. Payne
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2017.02499

Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium
Cited by: 36
Author(s): Elham Karimi, Maria João Ramos, Jorge M. S. Gonçalves, Joana R. Xavier, Margarida Reis, Rodrigo Costa
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2019.01080

The Soil Microbiome of GLORIA Mountain Summits in the Swiss Alps
Cited by: 58
Author(s): Magdalene Adamczyk, Frank Hagedorn, Sonja Wipf, Johanna Donhauser, Pascal Vittoz, Christian Rixen, Aline Frossard, Jean‐Paul Theurillat, Beat Frey
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.531404

Cross Inoculation of Rumen Fluid to Improve Dry Matter Disappearance and Its Effect on Bacterial Composition Using an in vitro Batch Culture Model
Cited by: 2
Author(s): Katie McDermott, Michael R. F. Lee, Kenneth J. McDowall, H.M.R. Greathead
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2021.633396

The Sputum Microbiome in Pulmonary Tuberculosis and Its Association With Disease Manifestations: A Cross-Sectional Study
Cited by: 8
Author(s): Monica R. Ticlla, Jerry Hella, Hellen Hiza, Mohamed Sasamalo, Francis Mhimbira, Liliana K. Rutaihwa, Sara Droz, Sarah Schaller, Klaus Reither, Markus Hilty, Iñaki Comas, Christian Beisel, Christoph D. Schmid, Lukas Fenner, Sébastien Gagneux
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2020.575207

Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific
Cited by: 9
Author(s): Keilor Rojas‐Jimenez, Hans‐Peter Grossart, Erik E. Cordes, Jorge Cortés
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2020.526898

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem
Cited by: 12
Author(s): Haihua Wang, Honglong Chu, Qing Dou, Huijin Feng, Ming Tang, Shuoxin Zhang, Chunyan Wang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2021.581430

Environmental and Anthropogenic Factors Shape Major Bacterial Community Types Across the Complex Mountain Landscape of Switzerland
Cited by: 9
Author(s): Johanna Mayerhofer, Daniel Wächter, Pierluigi Calanca, Lukas Kohli, Tobias Roth, R. G. Meuli, Franco Widmer
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2021.708475

Spatiotemporal Assembly of Bacterial and Fungal Communities of Seed-Seedling-Adult in Rice
Cited by: 8
Author(s): Hyun Kim, Yong-Hwan Lee
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2020.542742

Testing the Two-Step Model of Plant Root Microbiome Acquisition Under Multiple Plant Species and Soil Sources
Cited by: 14
Author(s): Hugo R. Barajas, Shamayim Martínez-Sánchez, Miguel Romero, Cristóbal Hernández Álvarez, Luis Servı́n‐González, Mariana Peimbert, Rocío Cruz-Ortega, Felipe Garcı́a-Oliva, Luis David Alcaraz
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2021.644540

Motor Stereotypic Behavior Was Associated With Immune Response in Macaques: Insight From Transcriptome and Gut Microbiota Analysis
Cited by: 3
Author(s): Xuan Pan, Fangyuan Liu, Yang Song, Hongrun Wang, Lingyun Wang, Hong Qiu, Megan Price, Jing Li
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2021.643731

Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives
Cited by: 11
Author(s): Rowena Hill, Theo Llewellyn, Elizabeth Downes, Joseph Oddy, Catriona MacIntosh, Simon Kallow, Bart Panis, John B. Dickie, Ester Gaya
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2018.00298

Environmental and Host Effects on Skin Bacterial Community Composition in Panamanian Frogs
Cited by: 40
Author(s): Brandon J. Varela, David Lesbarrères, Roberto Ibáñez, David M. Green
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2016.00685

Concentration of Petroleum-Hydrocarbon Contamination Shapes Fungal Endophytic Community Structure in Plant Roots
Cited by: 20
Author(s): Guillaume Bourdel, Alice Roy‐Bolduc, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2021.666936

Description of Microbial Communities of Phosphate Mine Wastes in Morocco, a Semi-Arid Climate, Using High-Throughput Sequencing and Functional Prediction
Cited by: 5
Author(s): Najoua Mghazli, Laila Sbabou, Rachid Hakkou, Ahmed Ouhammou, Mariam El Adnani, Odile Bruneel
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2021.619112

Impact of Processed Food (Canteen and Oil Wastes) on the Development of Black Soldier Fly (Hermetia illucens) Larvae and Their Gut Microbiome Functions
Cited by: 31
Author(s): Thomas Klammsteiner, Andreas Walter, Tajda Bogataj, Carina Desirée Heussler, Blaž Stres, Florian M. Steiner, Birgit C. Schlick‐Steiner, Heribert Insam
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2020.584222

Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea
Cited by: 8
Author(s): Paul A. Steiner, Javier Geijo, Eduard Fadeev, Aleix Obiol, Eva Sintes, Thomas Rattei, Gerhard J. Herndl
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2020.00198

Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant Development
Cited by: 7
Author(s): Adriana M. García-Lemos, Alex Gobbi, Mette Haubjerg Nicolaisen, Lars Hansen, Thomas Roitsch, Bjarke Veierskov, Ole Nybroe
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.02590

Two Populations of Mites (Tyrophagus putrescentiae) Differ in Response to Feeding on Feces-Containing Diets
Cited by: 18
Author(s): Jan Hubert, Marta Nešvorná, B. Sopko, Jaroslav Smrž, Pavel B. Klimov, Tomáš Erban
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2016.00902

Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem
Cited by: 27
Author(s): Francisco Dini‐Andreote, Maria Julia de Lima Brossi, Jan Dirk van Elsas, Joana Falccao Salles
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.572534

Coral-Associated Viral Assemblages From the Central Red Sea Align With Host Species and Contribute to Holobiont Genetic Diversity
Cited by: 12
Author(s): Anny Cárdenas, Jin Ye, Maren Ziegler, Jérôme P. Payet, Ryan McMinds, Rebecca Vega Thurber, Christian R. Voolstra
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2020.491425

Stream Microbial Community Structured by Trace Elements, Headwater Dispersal, and Large Reservoirs in Sub-Alpine and Urban Ecosystems
Cited by: 5
Author(s): Erin Jones, Natasha A. Griffin, Julia E. Kelso, Gregory T. Carling, Michelle A. Baker, Zachary T. Aanderud
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2017.00457

Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts
Cited by: 19
Author(s): Irene Stefanini, Silvia Carlin, Noemi Tocci, Davide Albanese, Claudio Donati, Pietro Franceschi, Michele Paris, Alberto Zenato, Silvano Tempesta, Alberto Bronzato, Urška Vrhovšek, Fulvio Mattivi, Duccio Cavalieri
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.01206

Propionate-Producing Consortium Restores Antibiotic-Induced Dysbiosis in a Dynamic in vitro Model of the Human Intestinal Microbial Ecosystem
Cited by: 70
Author(s): Racha El Hage, Emma Hernandez-Sanabria, Marta Calatayud, Ruben Props, Tom Van de Wiele
Software Mentions: 4
Published: over 5 years ago

10.3389/fnut.2021.640100

Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome
Cited by: 7
Author(s): Jason W. Arnold, Hunter D. Whittington, Sue F. Dagher, Jeffery Roach, M. Andrea Azcárate-Peril, José M. Bruno-Bárcena
Software Mentions: 4
Published: over 3 years ago

10.1080/19490976.2021.1875797

Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Cited by: 6
Author(s): Nishat Tasnim, Candice Quin, S K Gill, Chunping Dai, Miranda M. Hart, Deanna L. Gibson
Software Mentions: 4
Published: almost 4 years ago

10.1080/19490976.2021.1936378

Effect of COVID-19 precautions on the gut microbiota and nosocomial infections
Cited by: 9
Author(s): Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, Harika Nalluri, Thomas Kaiser, Shernan G. Holtan, Alexander Khoruts, Daniel J. Weisdorf, Christopher Staley
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13099-014-0039-8

Probiotics and virulent human rotavirus modulate the transplanted human gut microbiota in gnotobiotic pigs
Cited by: 44
Author(s): Husen Zhang, Haifeng Wang, Megan Shepherd, Ke Wen, Guohua Li, Xing-Dong Yang, Jacob Kocher, Ernawati Arifin Giri-Rachman, Allan W. Dickerman, Robert E. Settlage, Lijuan Yuan
Software Mentions: 4
Published: about 10 years ago

10.3390/insects10120446

The Response of Neotropical Dragonflies (Insecta: Odonata) to Local and Regional Abiotic Factors in Small Streams of the Amazon
Cited by: 21
Author(s): José Max Barbosa de Oliveira, Karina Dias-Silva, Maria Alexandra Teodósio, Leandro Juen
Software Mentions: 4
Published: almost 5 years ago

10.3390/insects11010026

How Bees Respond Differently to Field Margins of Shrubby and Herbaceous Plants in Intensive Agricultural Crops of the Mediterranean Area
Cited by: 11
Author(s): J. Sánchez, Aline Carrasco, Michelangelo La Spina, María Pérez‐Marcos, F. J. Ortiz-Sánchez
Software Mentions: 4
Published: almost 5 years ago

10.3390/insects12010011

Olfactory Choice for Decomposition Stage in the Burying Beetle Nicrophorus vespilloides: Preference or Aversion?
Cited by: 4
Author(s): Pablo J. Delclós, Tammy L. Bouldin, Jeffery K. Tomberlin
Software Mentions: 4
Published: almost 4 years ago

10.1093/icb/icz007

Leukocyte Profiles Reflect Geographic Range Limits in a Widespread Neotropical Bat
Cited by: 22
Author(s): Daniel J. Becker, Cecilia Nachtmann, Hernán Darío Argibay, Gonzalo Núñez, Marina Escalera-Zamudio, Jorge Carrera, Carlos Tello, Erik Winiarski, Alex D. Greenwood, Maria L. Méndez-Ojeda, Elizabeth Loza-Rubio, Anne Lee, Benoı̂t de Thoisy, Gábor Á. Czirják, Raina K. Plowright, Sonia Altizer, Daniel G. Streicker
Software Mentions: 4
Published: over 5 years ago

10.1186/s40104-020-00459-w

Eggshell and environmental bacteria contribute to the intestinal microbiota of growing chickens
Cited by: 33
Author(s): Joel J. Maki, Elizabeth Bobeck, Matthew J. Sylte, Torey Looft
Software Mentions: 4
Published: over 4 years ago

10.1186/s40104-020-00498-3

Dietary Bacillus spp. enhanced growth and disease resistance of weaned pigs by modulating intestinal microbiota and systemic immunity
Cited by: 34
Author(s): Yijie He, Cynthia Jinno, Kwang‐Wook Kim, Zhaohai Wu, Bin Tan, Xunde Li, Rose Whelan, Yanhong Liu
Software Mentions: 4
Published: about 4 years ago

10.1186/s40104-021-00545-7

Evaluation of curcumin and copper acetate against Salmonella Typhimurium infection, intestinal permeability, and cecal microbiota composition in broiler chickens
Cited by: 20
Author(s): Anaisa A. Leyva-Diaz, Daniel Hernández-Patlán, Bruno Solís-Cruz, Bishnu Adhikari, Young Min Kwon, Juan D. Latorre, Xóchitl Hernández-Velasco, Benjamín Fuente-Martínez, Billy M. Hargis, Raquel López‐Arellano, Guillermo Téllez–Isaías
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40104-021-00617-8

Effects of supplemental xylanase and xylooligosaccharides on production performance and gut health variables of broiler chickens
Cited by: 27
Author(s): Amit Kumar Singh, Birendra Mishra, M.R. Bedford
Software Mentions: 4
Published: about 3 years ago

10.1038/srep16807

Application of density gradient for the isolation of the fecal microbial stool component and the potential use thereof
Cited by: 40
Author(s): Arancha Hevia, Susana Delgado, Abelardo Margollés, Borja Sánchez
Software Mentions: 4
Published: about 9 years ago

10.1038/srep18837

Mineral and organic growing media have distinct community structure, stability and functionality in soilless culture systems
Cited by: 49
Author(s): Oliver Grunert, Emma Hernandez-Sanabria, Ramiro Vílchez-Vargas, Ruy Jáuregui, Dietmar H. Pieper, Maaike Perneel, Marie-Christine Van Labeke, Dirk Reheul, Nico Boon
Software Mentions: 4
Published: almost 9 years ago

10.1038/srep26425

The microbiomes and metagenomes of forest biochars
Cited by: 42
Author(s): Genevieve L. Noyce, C. L. Winsborough, Roberta R. Fulthorpe, Nathan Basiliko
Software Mentions: 4
Published: over 8 years ago

10.1038/srep28484

Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls
Cited by: 587
Author(s): Jun Chen, Nicholas Chia, Krishna R. Kalari, Jingwen Yao, Martina Novotná, M. Mateo Paz Soldán, David Luckey, Eric Marietta, Patricio Jeraldo, Xianfeng Chen, Brian G. Weinshenker, Moses Rodriguez, Orhun H. Kantarci, Heidi Nelson, Joseph A. Murray, Ashutosh K. Mangalam
Software Mentions: 4
Published: over 8 years ago

10.1038/srep35272

Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz
Cited by: 21
Author(s): Francisco J. R. C. Coelho, António Louvado, Patrícia M. Domingues, Daniel F. R. Cleary, Marina Ferreira, Adelaide Almeida, Ascensão Ravara, Ângela Cunha, Newton C. M. Gomes
Software Mentions: 4
Published: about 8 years ago

10.1038/srep45840

Microbial Biogeography and Core Microbiota of the Rat Digestive Tract
Cited by: 105
Author(s): Dongyao Li, Haiqin Chen, Bingyong Mao, Qin Yang, Jianxin Zhao, Zhennan Gu, Hao Zhang, Yong Q. Chen, Wei Chen
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-00650-6

Microbial Functional Capacity Is Preserved Within Engineered Soil Formulations Used In Mine Site Restoration
Cited by: 34
Author(s): Deepak Kumaresan, Adam T. Cross, Benjamin Moreira‐Grez, Khalil Kariman, Paul Nevill, Jason C. Stevens, Richard J. N. Allcock, Anthony G. O'Donnell, Kingsley W. Dixon, Andrew S. Whiteley
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-01126-3

Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments
Cited by: 106
Author(s): Arghya Mukherjee, Bobby Chettri, James S. Langpoklakpam, Pijush Basak, Aravind Prasad, Ashis K. Mukherjee, Maitree Bhattacharyya, Arvind Singh, Dhrubajyoti Chattopadhyay
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-32772-w

Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers
Cited by: 13
Author(s): Isidora Echenique‐Subiabre, Anouk Zancarini, Mark W. Heath, Susanna A. Wood, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-33950-6

Diversity of macaque microbiota compared to the human counterparts
Cited by: 37
Author(s): Zigui Chen, Yun Kit Yeoh, Michael K. Hui, Pak-Kin Wong, Max Kam-Kwan Chan, Margaret Ip, Jun Yu, Robert D. Burk, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-34640-z

Reduced diversity of gut microbiota in two Aedes mosquitoes species in areas of recent invasion
Cited by: 30
Author(s): Fausta Rosso, Valentina Tagliapietra, Davide Albanese, Massimo Pindo, Frédéric Baldacchino, Daniele Arnoldi, Claudio Donati, Annapaola Rizzoli
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-34453-0

Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice
Cited by: 64
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Brian D. Piccolo, Kelly E. Mercer, Aline Andres, Keshari Thakali, Kartik Shankar
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-35230-9

Decreased microbial co-occurrence network stability and SCFA receptor level correlates with obesity in African-origin women
Cited by: 35
Author(s): Lara R. Dugas, Beatriz Peñalver Bernabé, Medha Priyadarshini, Na Fei, Seo Jin Park, Laquita Brown, Jacob Plange‐Rhule, David E. Nelson, Evelyn Toh, Xiang Gao, Qunfeng Dong, Jun Sun, Stephanie Kliethermes, Neil Gottel, Amy Luke, Jack A. Gilbert, Brian T. Layden
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-38049-6

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota
Cited by: 30
Author(s): Jennifer Rosenbaum, Mykhaylo Usyk, Zigui Chen, Christine P. Zolnik, Heidi E. Jones, Levi Waldron, Jennifer Beam Dowd, Lorna E. Thorpe, Robert D. Burk
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-41542-1

Thickness determines microbial community structure and function in nitrifying biofilms via deterministic assembly
Cited by: 66
Author(s): Carolina Suarez, Maria Piculell, Oskar Modin, Silke Langenheder, Frank Persson, Malte Hermansson
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-42865-9

Differences in resource use lead to coexistence of seed-transmitted microbial populations
Cited by: 15
Author(s): Gloria Torres-Cortés, Benjamin J. Garcia, Stéphane Compant, Samir Rezki, Piet Jones, Anne Préveaux, Martial Briand, Alain Roulet, Olivier Bouchez, Daniel Jacobson, Matthieu Barret
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-43305-4

Soil amendments with ethylene precursor alleviate negative impacts of salinity on soil microbial properties and productivity
Cited by: 28
Author(s): Hongwei Liu, Muhammad Yahya Khan, Lília C. Carvalhais, Manuel Delgado‐Baquerizo, Lijuan Yan, Mark Crawford, Paul G. Dennis, Brajesh K. Singh
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-43325-0

Deep-sea benthic communities in the largest oceanic desert are structured by the presence of polymetallic crust
Cited by: 8
Author(s): Juliette Delavenne, Louise Keszler, Magalie Castelin, Pierre Livet, Philippe Maestrati, Sarah Samadi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-45724-9

Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7−/− mice
Cited by: 18
Author(s): Lisa Perruzza, Francesco Strati, Giorgio Gargari, Anna Maria D’Erchia, Bruno Fosso, Graziano Pesole, Simone Guglielmetti, Fabio Grassi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-46106-x

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome
Cited by: 32
Author(s): Caroline De Tender, Bart Mesuere, Felix Van der Jeugt, Annelies Haegeman, Tom Ruttink, Bart Vandecasteele, Peter Dawyndt, Jane Debode, Eiko E. Kuramae
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-46353-y

Incense Burning is Associated with Human Oral Microbiota Composition
Cited by: 11
Author(s): Yvonne Vallès, Claire K. Inman, Brandilyn A. Peters, Laila Abdel Wareth, Abdishakur Abdulle, Habiba Alsafar, Fatme Al Anouti, Ayesha Al Dhaheri, Divya Galani, Muna Abdalla Mohamed Haji, Aisha Al Hamiz, Ayesha Al Hosani, Mohammed Al-Houqani, Abdulla AlJunaibi, Marina Kazim, Tomas Kirchhoff, Wael Al Mahmeed, Fatma Al-Maskari, Abdullah Alnaeemi, Naima Oumeziane, Ravichandran Ramasamy, Ann Marie Schmidt, Henri Vallès, Eiman Al Zaabi, Scott E. Sherman, Raghib Ali, Jiyoung Ahn, Richard B. Hayes
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-48166-5

Enrichment of intracellular sulphur cycle –associated bacteria in intertidal benthic foraminifera revealed by 16S and aprA gene analysis
Cited by: 12
Author(s): I. Salonen, Panagiota-Myrsini Chronopoulou, Clare Bird, Gert‐Jan Reichart, Karoliina A. Koho
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78165-w

Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-77907-0

Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life
Cited by: 6
Author(s): Tamsin Lyons, Hanne Jahns, Joseph Brady, Eóin O’Hara, Sinéad M. Waters, David A. Kenny, Evelyn Doyle, Kieran G. Meade
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-78525-6

Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia
Cited by: 11
Author(s): Katrina West, Zoe T. Richards, Euan S. Harvey, Robert Susac, Alicia Grealy, Michael Bunce
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-79055-x

Simultaneous allergic traits in dogs and their owners are associated with living environment, lifestyle and microbial exposures
Cited by: 13
Author(s): Jenni Lehtimäki, Hanna Sinkko, Anna Hielm‐Björkman, Tiina Laatikainen, Lasse Ruokolainen, Hannes Lohi
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-79320-z

Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays)
Cited by: 32
Author(s): Katie Murphy, Joseph Edwards, Katherine Louie, Benjamin P. Bowen, Venkatesan Sundaresan, Trent Northen, Philipp Zerbe
Software Mentions: 4
Published: almost 4 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292