Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.1128/mSphere.00226-16
Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City
Cited by: 22
Author(s): Holly M. Bik, Julia M. Maritz, Albert Luong, Hakdong Shin, Maria Gloria Domínguez-Bello, Jane M. Carlton
Software Mentions: 4
Published: almost 8 years ago
10.1128/mSphere.00560-17
Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates
Cited by: 17
Author(s): Francesco Multinu, Sean C. Harrington, Jun Chen, Patricio Jeraldo, Stephen Johnson, Nicholas Chia, Marina Walther-Antonio
Software Mentions: 4
Published: over 6 years ago
10.1128/mSphere.00332-18
Tongue Microbiota and Oral Health Status in Community-Dwelling Elderly Adults
Cited by: 66
Author(s): Mikari Asakawa, Toru Takeshita, Michiko Furuta, Shinya Kageyama, Kenji Takeuchi, Jun Hata, Toshiharu Ninomiya, Yoshihisa Yamashita
Software Mentions: 4
Published: about 6 years ago
10.1128/mSphere.00382-18
The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status
Cited by: 22
Author(s): Sarah M. Hird, Holly H. Ganz, Jonathan A. Eisen, Walter M. Boyce
Software Mentions: 4
Published: about 6 years ago
10.1128/mSphere.00626-18
Decreased Snow Cover Stimulates Under-Ice Primary Producers but Impairs Methanotrophic Capacity
Cited by: 15
Author(s): Sarahi L. Garcia, Anna J. Székely, Christoffer Bergvall, Martha Schattenhofer, Sari Peura
Software Mentions: 4
Published: over 5 years ago
10.1128/mSphere.00730-19
Gut Microbiomes of the Eastern Oyster ( <i>Crassostrea virginica</i> ) and the Blue Mussel ( <i>Mytilus edulis</i> ): Temporal Variation and the Influence of Marine Aggregate-Associated Microbial Communities
Cited by: 43
Author(s): Melissa L. Pierce, J. Evan Ward
Software Mentions: 4
Published: almost 5 years ago
10.1128/mSphere.00558-19
Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia
Cited by: 41
Author(s): Lu Wu, Tiansheng Zeng, Massimo Deligios, Luciano Milanesi, Morgan G. I. Langille, Angelo Zinellu, Salvatore Rubino, Ciriaco Carru, David J. Kelvin
Software Mentions: 4
Published: over 4 years ago
10.1128/mSphere.00354-20
Light and Primary Production Shape Bacterial Activity and Community Composition of Aerobic Anoxygenic Phototrophic Bacteria in a Microcosm Experiment
Cited by: 14
Author(s): Kasia Piwosz, Ana Vrdoljak, Thijs Frenken, Juan Manuel González‐Olalla, Danijela Šantić, R. Michael L. McKay, Kristian Spilling, Louis Guttman, Petr Znachor, Izabela Mujakić, Lívia Kolesár Fecskeová, Luca Zoccarato, Martina Hanusová, Andrea Pessina, Tom Reich, Hans‐Peter Grossart, Michal Koblížek
Software Mentions: 4
Published: about 4 years ago
10.1128/mSphere.00484-20
Root Microbiome Modulates Plant Growth Promotion Induced by Low Doses of Glyphosate
Cited by: 16
Author(s): Darío X. Ramírez-Villacís, Omri M. Finkel, Isai Salas-González, Connor R. Fitzpatrick, Jeffery L. Dangl, Corbin D. Jones, Antonio León-Reyes
Software Mentions: 4
Published: about 4 years ago
10.1128/mSphere.00451-20
Assessing the Variation within the Oral Microbiome of Healthy Adults
Cited by: 43
Author(s): Jacob T. Nearing, Vanessa DeClercq, Johan Van Limbergen, Morgan G. I. Langille
Software Mentions: 4
Published: about 4 years ago
10.1128/mSphere.00731-20
Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India
Cited by: 20
Author(s): Samantha L Huey, Lingjing Jiang, Marcus W. Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G. Russell, Shobha Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, Ramesh Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D. Haas, Julia L. Finkelstein, Rob Knight, Saurabh Mehta
Software Mentions: 4
Published: about 4 years ago
10.1128/mSphere.01044-20
Gut Bacteria Shared by Children and Their Mothers Associate with Developmental Level and Social Deficits in Autism Spectrum Disorder
Cited by: 5
Author(s): Yu Chen, Hui Fang, Chunyan Li, Guojun Wu, Ting Xu, Xin Yang, Liping Zhao, Xiaoyan Ke, Chenhong Zhang
Software Mentions: 4
Published: almost 4 years ago
10.1128/mSphere.00562-20
Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota
Cited by: 4
Author(s): L. Patrick Schenck, Joshua J.C. McGrath, Daphnée Lamarche, Martin R. Stämpfli, Dawn M. E. Bowdish, Michael G. Surette
Software Mentions: 4
Published: almost 4 years ago
10.1128/mSphere.00083-21
Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in Mexico
Cited by: 8
Author(s): Oswaldo Partida-Rodríguez, Miriam Nieves-Ramı́rez, Isabelle Laforest‐Lapointe, Eric Brown, Laura Wegener Parfrey, A Valadez-Salazar, Lisa Thorson, Patricia Morán, Enrique González, E. Ortiz Rascón, Ulises Magaña, E. Hernández, Liliana Rojas-Velázquez, Javier Torres, Marie Claire Arrieta, Cecilia Ximénez, B. Brett Finlay
Software Mentions: 4
Published: about 3 years ago
10.1128/mSphere.00525-21
Proteorhodopsin Phototrophy in Antarctic Coastal Waters
Cited by: 2
Author(s): Jerónimo Cifuentes-Anticevic, María E. Alcamán-Arias, Tomás Alarcón-Schumacher, Javier Tamayo-Leiva, Carlos Pedrós-Alió, Laura Farı́as, Beatriz Dı́ez
Software Mentions: 4
Published: about 3 years ago
10.1128/mSystems.00038-18
Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation
Cited by: 66
Author(s): Andrea Söllinger, Alexander Tøsdal Tveit, Morten Poulsen, Samantha Joan Noel, Mia M. Bengtsson, Jörg Bernhardt, Anne Louise Frydendahl Hellwing, Peter Lund, Katharina Riedel, Christa Schleper, Ole Højberg, Tim Urich
Software Mentions: 4
Published: about 6 years ago
10.1128/mSystems.00200-18
Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors
Cited by: 59
Author(s): Ashkaan K. Fahimipour, Sarah Ben Maamar, Alexander McFarland, Ryan A. Blaustein, Jing Chen, A. Glawe, Jeff Kline, Jessica L. Green, Rolf U. Halden, Kevin Van Den Wymelenberg, Curtis Huttenhower, Erica M. Hartmann
Software Mentions: 4
Published: about 6 years ago
10.1186/s12974-021-02206-y
Acute pre-operative ibuprofen improves cognition in a rat model for postoperative cognitive dysfunction
Cited by: 14
Author(s): Klaske Oberman, Iris B. Hovens, Jacco J. de Haan, Joana Falcao-Salles, Barbara L. van Leeuwen, Regien G. Schoemaker
Software Mentions: 4
Published: over 3 years ago
10.1080/20002297.2019.1633194
Bacterial biofilm composition in healthy subjects with and without caries experience.
Cited by: 37
Author(s): Kyrill Schoilew, Helena Ueffing, Alexander H. Dalpke, Björn Wolff, Cornelia Frese, Diana Wolff, Sébastien Boutin
Software Mentions: 4
Published: almost 6 years ago
10.18632/oncotarget.27629
Bacteriome and mycobiome and bacteriome-mycobiome interactions in head and neck squamous cell carcinoma
Cited by: 22
Author(s): Elizabeth Shay, Naseer Sangwan, Roshan Padmanabhan, Scott Lundy, Brian B. Burkey, Charis Eng
Software Mentions: 4
Published: over 4 years ago
10.1186/s12967-018-1755-5
Serum protein signature of coronary artery disease in type 2 diabetes mellitus
Cited by: 28
Author(s): Ramu Adela, Podduturu Naveen Chander Reddy, Tarini Shankar Ghosh, Suruchi Aggarwal, Amit Kumar Yadav, Bhabatosh Das, Sanjay K. Banerjee
Software Mentions: 4
Published: almost 6 years ago
10.3390/nu12072147
A Comprehensive Evaluation of the Impact of Bovine Milk Containing Different Beta-Casein Profiles on Gut Health of Ageing Mice
Cited by: 22
Author(s): Barbara Guantario, Marzia Giribaldi, Chiara Devirgiliis, Alberto Finamore, Elena Colombino, Maria Teresa Capucchio, Rocchina Evangelista, Vincenzo Motta, Paola Zinno, Simona Cirrincione, Sara Antoniazzi, Laura Cavallarin, Marianna Roselli
Software Mentions: 4
Published: over 4 years ago
10.3390/nu13062069
Timing of Tributyrin Supplementation Differentially Modulates Gastrointestinal Inflammation and Gut Microbial Recolonization Following Murine Ileocecal Resection
Cited by: 1
Author(s): Valentin Mocanu, Heekuk Park, Jerry Dang, Naomi Hotte, Aducio Thiesen, Michael Laffin, Haili Wang, Daniel W. Birch, Karen Madsen
Software Mentions: 4
Published: over 3 years ago
10.3390/nu12082414
Impacts of Habitual Diets Intake on Gut Microbial Counts in Healthy Japanese Adults
Cited by: 6
Author(s): T. Sugimoto, Tatsuichiro Shima, Ryuta Amamoto, Chiaki Kaga, Yukiko Kado, Osamu Watanabe, Junko Shiinoki, Kaoru Iwazaki, Hiroko Shigemura, Hirokazu Tsuji, Satoshi Matsumoto
Software Mentions: 4
Published: over 4 years ago
10.3390/nu10050576
Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project
Cited by: 92
Author(s): Natalia Klimenko, Alexander V. Tyakht, Anna Popenko, Anatoly S. Vasiliev, Ilya Altukhov, Dimitry D Ischenko, Tatiana I. Shashkova, Daria Efimova, Dimitri A. Nikogosov, Dmitrii A. Osipenko, Sergey Musienko, Kseniya S. Selezneva, Ancha Baranova, Alexander Kurilshikov, Stepan V. Toshchakov, Aleksei A. Korzhenkov, Nazar I. Samarov, Margarita Shevchenko, A.V. Tepliuk, Dmitry Alexeev
Software Mentions: 4
Published: over 6 years ago
10.3390/nu13072180
Impact of Glucosamine Supplementation on Gut Health
Cited by: 3
Author(s): Jessica M. Moon, Peter Finnegan, Richard A. Stecker, Hanna Lee, Kayla M. Ratliff, Ralf Jäger, Martin Purpura, Carolyn M. Slupsky, Maria L. Marco, Craig J. Wissent, Jason Theodosakis, Chad M. Kerksick
Software Mentions: 4
Published: over 3 years ago
10.3390/nu13010201
Genistein Reduces the Risk of Local Mammary Cancer Recurrence and Ameliorates Alterations in the Gut Microbiota in the Offspring of Obese Dams
Cited by: 15
Author(s): Fábia de Oliveira Andrade, Fang Liu, Xiyuan Zhang, Mariana Rosim, Caroline Dani, Idalia M. Cruz, Thomas T.Y. Wang, William G. Helferich, Robert W. Li, Leena Hilakivi‐Clarke
Software Mentions: 4
Published: almost 4 years ago
10.3390/nu13061937
Characterizing the Effects of Calcium and Prebiotic Fiber on Human Gut Microbiota Composition and Function Using a Randomized Crossover Design—A Feasibility Study
Cited by: 8
Author(s): Lara Yoon, Karin B. Michels
Software Mentions: 4
Published: over 3 years ago
10.3390/nu11051135
Safety of Hyaluronan 35 in Healthy Human Subjects: A Pilot Study
Cited by: 8
Author(s): Annette Bellar, Sean P. Kessler, Dana R. Obery, Naseer Sangwan, Nicole Welch, Laura E. Nagy, Srinivasan Dasarathy, Carol de la Motte
Software Mentions: 4
Published: over 5 years ago
10.3390/nu13062032
Gut Microbiota Profile and Its Association with Clinical Variables and Dietary Intake in Overweight/Obese and Lean Subjects: A Cross-Sectional Study
Cited by: 60
Author(s): Judit Companys, María José Gosalbes, Laura Pla‐Pagà, Lorena Calderón-Pérez, Elisabet Llauradó, Anna Pedret, Rosa M. Valls, Nuria Jiménez‐Hernández, Berner Andrée Sandoval-Ramírez, Josep Maria del Bas, Antoni Caimari, Laura Rubió, Rosa Solà
Software Mentions: 4
Published: over 3 years ago
10.3389/fimmu.2021.670500
Chronic Stress-Induced Depression and Anxiety Priming Modulated by Gut-Brain-Axis Immunity
Cited by: 40
Author(s): Susan Westfall, Francesca Caracci, Molly Estill, Tal Frolinger, Li Shen, Giulio Maria Pasinetti
Software Mentions: 4
Published: over 3 years ago
10.1002/lno.11742
Amino acid <scp> δ <sup>13</sup> C </scp> and <scp> δ <sup>15</sup> N </scp> analyses reveal distinct species‐specific patterns of trophic plasticity in a marine symbiosis
Cited by: 14
Author(s): Christopher B. Wall, Natalie J. Wallsgrove, Ruth D. Gates, Brian N. Popp
Software Mentions: 4
Published: over 3 years ago
10.3389/fcimb.2020.00173
Cystic Fibrosis Patients Infected With Epidemic Pseudomonas aeruginosa Strains Have Unique Microbial Communities
Cited by: 7
Author(s): Nicole Acosta, Barbara Waddell, Alya Heirali, Ranjani Somayaji, Michael G. Surette, Matthew L. Workentine, Harvey Rabin, Michael D. Parkins
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-021-90226-2
Refinement of 16S rRNA gene analysis for low biomass biospecimens
Cited by: 8
Author(s): Remy Villette, Gaëlle Autaa, Sophie Hind, Johanna B. Holm, Alicia Moreno-Sabater, Martin Larsen
Software Mentions: 4
Published: over 3 years ago
10.3390/ani10040676
Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs
Cited by: 11
Author(s): Francesca Romana Massacci, Alessandra Morelli, Lucilla Cucco, Adrien Castinel, Roberta Ortenzi, Silvia Tofani, Giovanni Pezzotti, Jordi Estellé, Marta Paniccià, Chiara Francesca Magistrali
Software Mentions: 4
Published: over 4 years ago
10.3390/microorganisms8111729
A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes
Cited by: 7
Author(s): Kshitij Tandon, Bayanmunkh Baatar, Pei‐Wen Chiang, Dashdondog Narangarvuu, Bolormaa Oyuntsetseg, Sen‐Lin Tang
Software Mentions: 4
Published: about 4 years ago
10.3390/life11010007
The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice
Cited by: 8
Author(s): Erick S. LeBrun, Meghali Nighot, Dharmaprakash Viszwapriya, Anand Kumar, Chien-Chi Lo, Patrick Chain, Y. Thomas
Software Mentions: 4
Published: almost 4 years ago
10.3390/microorganisms9040718
Effects of Clinical Wastewater on the Bacterial Community Structure from Sewage to the Environment
Cited by: 5
Author(s): Ilse Verburg, H. Pieter J. van Veelen, Karola Waar, John W. A. Rossen, Alex Friedrich, Lucía Hernández Leal, Silvia García-Cobos, Heike Schmitt
Software Mentions: 4
Published: over 3 years ago
10.3389/fimmu.2020.598152
Gut Microbiome of Children and Adolescents With Primary Sclerosing Cholangitis in Association With Ulcerative Colitis
Cited by: 16
Author(s): Ramon V. Cortez, Luana Moreira, Marina Padilha, Mariana D Bibas, Ricardo Katsuya Toma, Gilda Porta, Carla Romano Taddei
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-89658-7
Different land-use types equally impoverish but differentially preserve grassland species and functional traits of spider assemblages
Cited by: 6
Author(s): Carolina M. Pinto, Pamela E. Pairo, M. Isabel Bellocq, Julieta Filloy
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2019.00555
Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media
Cited by: 14
Author(s): Silvio D. Brugger, Julia G. Kraemer, Weihong Qi, Lindsey Bomar, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: over 5 years ago
10.1186/s13568-019-0747-z
Dietary supplementation with fermented Mao-tai lees beneficially affects gut microbiota structure and function in pigs
Cited by: 18
Author(s): Huan Li, Huawei Li, Peifeng Xie, Zhihua Li, Yulong Yin, François Blachier, Xiangfeng Kong
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-021-90720-7
Benthic estuarine communities' contribution to bioturbation under the experimental effect of marine heatwaves
Cited by: 3
Author(s): Marina Dolbeth, O. Babe, Dimitri Araujo Costa, Ana P. Mucha, P.G. Cardoso, Francisco Arenas
Software Mentions: 4
Published: over 3 years ago
10.3390/microorganisms9020221
The Interplay between Campylobacter and the Caecal Microbial Community of Commercial Broiler Chickens over Time
Cited by: 9
Author(s): Ilaria Patuzzi, Massimiliano Orsini, Veronica Cibin, Sara Petrin, Eleonora Mastrorilli, Alessia Tiengo, Federica Gobbo, Salvatore Catania, Lisa Barco, Antonia Ricci, Carmen Losasso
Software Mentions: 4
Published: almost 4 years ago
10.1007/s00204-021-03132-x
The diarrhetic shellfish-poisoning toxin, okadaic acid, provokes gastropathy, dysbiosis and susceptibility to bacterial infection in a non-rodent bioassay, Galleria mellonella
Cited by: 13
Author(s): Helena Emery, William Traves, Andrew F. Rowley, Christopher J. Coates
Software Mentions: 4
Published: over 3 years ago
10.3390/microorganisms8010008
Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont
Cited by: 22
Author(s): Monica M. Sheffer, Gabriele Uhl, Stefan Prost, Tillmann Lueders, Tim Urich, Mia M. Bengtsson
Software Mentions: 4
Published: almost 5 years ago
10.3390/microorganisms7110502
The Human Milk Microbiota is Modulated by Maternal Diet
Cited by: 54
Author(s): Marina Padilha, Niels Banhos Danneskiold‐Samsøe, Asker Brejnrod, Christian Hoffmann, Vanessa Pereira Cabral, Julia de Melo Iaucci, Cristiane Hermes Sales, Regina Mara Fisberg, Ramon V. Cortez, Susanne Brix, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 4
Published: about 5 years ago
10.3389/fendo.2019.00941
The Association of Gut Microbiota With Idiopathic Central Precocious Puberty in Girls
Cited by: 20
Author(s): Guoqing Dong, Jiyong Zhang, Zhenyu Yang, Xin Feng, Jianxu Li, Dongfang Li, Miao Hao, Yinhu Li, Minghui Qiu, Xiyan Lu, Peihui Liu, Yanwu Zeng, Ximing Xu, Xiaoping Luo, Wenkui Dai, Sitang Gong
Software Mentions: 4
Published: almost 5 years ago
10.1089/ast.2018.1870
A Low-Diversity Microbiota Inhabits Extreme Terrestrial Basaltic Terrains and Their Fumaroles: Implications for the Exploration of Mars
Cited by: 18
Author(s): Charles S. Cockell, Jesse Patrick Harrison, Adam H. Stevens, Samuel J. Payler, S. S. Hughes, S. E. Kobs Nawotniak, A. L. Brady, R. C. Elphic, C. W. Haberle, A. Sehlke, K. Beaton, Andrew F. J. Abercromby, Petra Schwendner, Jennifer Wadsworth, Hanna Landenmark, Rosie Cane, Andrew W. Dickinson, Natasha Nicholson, Liam Perera, D. S. S. Lim
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-021-84532-y
18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific
Cited by: 4
Author(s): Tsuyoshi Watanabe, Satoshi Nagai, Yoko Kawakami, Taiga Asakura, Jun Kikuchi, Nobuharu Inaba, Yukiko Taniuchi, Hiroaki Kurogi, Seinen Chow, Tsutomu Tomoda, Daisuke Ambe, Daisuke Hasegawa
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-90198-3
Association of Candida albicans and Cbp+ Streptococcus mutans with early childhood caries recurrence
Cited by: 25
Author(s): Bruna Albuquerque Garcia, Natalia Acosta, Scott L. Tomar, Luiz Fernando Würdig Roesch, José A. Lemos, Leda Mugayar, Jacqueline Abranches
Software Mentions: 4
Published: over 3 years ago
10.3390/microorganisms9030476
Grazing Affects Bacterial and Fungal Diversities and Communities in the Rhizosphere and Endosphere Compartments of Leymus chinensis through Regulating Nutrient and Ion Distribution
Cited by: 14
Author(s): Yurong Yang, Siying Chen, Xuefeng Wu, Sajid Iqbal Syed, Irfan Ullah Shah Syed, Beitong Huang, Pingting Guan, Deli Wang
Software Mentions: 4
Published: over 3 years ago
10.3389/fcimb.2020.594778
Biliary Microbial Structure of Gallstone Patients With a History of Endoscopic Sphincterotomy Surgery
Cited by: 6
Author(s): Haikang Shen, Juanjuan Zhu, Fuqiang Ye, Danyi Xu, Liang Fang, Jianfeng Yang, Huijie Lv, Qifeng Lou, Hangbin Jin, Ming Ni, Xiaofeng Zhang
Software Mentions: 4
Published: almost 4 years ago
10.3389/fnhum.2020.605190
Functional Effects of Bilateral Dorsolateral Prefrontal Cortex Modulation During Sequential Decision-Making: A Functional Near-Infrared Spectroscopy Study With Offline Transcranial Direct Current Stimulation
Cited by: 6
Author(s): Iryna Schommartz, Annika Dix, Susanne Passow, Shu‐Chen Li
Software Mentions: 4
Published: almost 4 years ago
10.3389/fcimb.2020.00073
Household Pet Ownership and the Microbial Diversity of the Human Gut Microbiota
Cited by: 29
Author(s): Ashley E. Kates, Omar Jarrett, Joseph H. Skarlupka, Ajay K. Sethi, Megan Duster, Lauren Watson, Garret Suen, Keith P. Poulsen, Nasia Safdar
Software Mentions: 4
Published: over 4 years ago
10.3390/microorganisms7030072
Urbanization Altered Bacterial and Archaeal Composition in Tidal Freshwater Wetlands Near Washington DC, USA, and Buenos Aires, Argentina
Cited by: 3
Author(s): Martina Gonzalez Mateu, Cedric Evan Park, Cullen Patrick McAskill, Andrew H. Baldwin, Stephanie A. Yarwood
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-021-83851-4
Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, and wild type mice
Cited by: 30
Author(s): Payel Kundu, Eileen Ruth S. Torres, Keaton Stagaman, Kristin B. Kasschau, Mariam Okhovat, Sarah Holden, Samantha Ward, Kimberly A. Nevonen, Brett A. Davis, Takashi Saito, Takaomi C. Saido, Lucia Carbone, Thomas J. Sharpton, Jacob Raber
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-83153-9
Insufficient sampling constrains our characterization of plant microbiomes
Cited by: 11
Author(s): Lorinda Bullington, Ylva Lekberg, Beau Larkin
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-89002-z
Mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients
Cited by: 24
Author(s): William Johnston, Bob T. Rosier, Alejandro Artacho, Michael Paterson, Krystyna Piela, Christopher Delaney, Jason L. Brown, Gordon Ramage, Álex Mira, Shauna Culshaw
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-82311-3
Ethnicity influences the gut microbiota of individuals sharing a geographical location: a cross-sectional study from a middle-income country
Cited by: 61
Author(s): Jacky Dwiyanto, Md Hamed Hussain, Daniel D. Reidpath, Kuan Shion Ong, Aisha A Qasim, S. W. H. Lee, S. M. Lee, Su Chern Foo, Chun Wie Chong, Sadequr Rahman
Software Mentions: 4
Published: almost 4 years ago
10.3389/fcimb.2021.622550
Comparison of Two Approaches for the Metataxonomic Analysis of the Human Milk Microbiome
Cited by: 7
Author(s): Lorena Ruíz, Claudio Alba, Cristina García-Carral, Esther Jiménez, Kimberly A. Lackey, Michelle K. McGuire, Courtney L. Meehan, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela Gindola K, Gloria E. Otoo, Rossina G. Pareja, Lars Bode, Mark A. McGuire, Janet E. Williams, Juan M. Rodríguez
Software Mentions: 4
Published: over 3 years ago
10.3389/fcimb.2021.665159
Beneficial Effect of Alkaloids From Sophora alopecuroides L. on CUMS-Induced Depression Model Mice via Modulating Gut Microbiota
Cited by: 18
Author(s): Ming Zhang, Aoqiang Li, Qifang Yang, Jingyi Li, Lihua Wang, Xiuxian Liu, Yanxin Huang, Lei Liu
Software Mentions: 4
Published: over 3 years ago
10.3390/microorganisms8111663
Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut
Cited by: 11
Author(s): Hiroki Nishiyama, Hisashi Endo, Romain Blanc-Mathieu, Hiroyuki Ogata
Software Mentions: 4
Published: about 4 years ago
10.3390/microorganisms7100441
Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale
Cited by: 17
Author(s): Sonia S. Valencia-Agami, Daniel Cerqueda‐García, S. Putzeys, María Magdalena Uribe-Flores, Ulises García-Cruz, Daniel Pech, Jorge A. Herrera-Silveira, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: about 5 years ago
10.3389/fcimb.2019.00271
Successional Dynamics in the Gut Microbiome Determine the Success of Clostridium difficile Infection in Adult Pig Models
Cited by: 4
Author(s): Stephanie D. Jurburg, Jan J. B. W. J. Cornelissen, Paulo de Boer, M.A. Smits, Johanna M.J. Rebel
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-021-81507-x
Multiple bacteria associated with the more dysbiotic genitourinary microbiomes in patients with type 2 diabetes mellitus
Cited by: 6
Author(s): Hua Zha, Fengping Liu, Zongxin Ling, Kevin Chang, Jiezuan Yang, Lanjuan Li
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-80982-6
Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants
Cited by: 34
Author(s): Jordan T. Russell, J. Lauren Ruoss, Diomel de la Cruz, Nan Li, Catalina Bazacliu, Laura Patton, Kelley Lobean McKinley, Timothy J. Garrett, Richard A. Polin, Eric W. Triplett, Josef Neu
Software Mentions: 4
Published: almost 4 years ago
10.3390/microorganisms7120611
Elevation is Associated with Human Skin Microbiomes
Cited by: 16
Author(s): Huan Li, Yijie Wang, Qiaoling Yu, Tianshu Feng, Rui Zhou, Liye Shao, Jiapeng Qu, Nan Li, Tingbei Bo, Huakun Zhou
Software Mentions: 4
Published: about 5 years ago
10.1038/s41598-020-79320-z
Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays)
Cited by: 32
Author(s): Katie Murphy, Joseph Edwards, Katherine Louie, Benjamin P. Bowen, Venkatesan Sundaresan, Trent Northen, Philipp Zerbe
Software Mentions: 4
Published: almost 4 years ago
10.1007/s00253-018-8932-6
Insights into microbial communities mediating the bioremediation of hydrocarbon-contaminated soil from an Alpine former military site
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 4
Published: over 6 years ago
10.3390/microorganisms9030530
The Adult Phenylketonuria (PKU) Gut Microbiome
Cited by: 16
Author(s): Viviana J. Mancilla, Allison E. Mann, Yan Zhang, Michael S. Allen
Software Mentions: 4
Published: over 3 years ago
10.3389/fcimb.2020.00174
Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study
Cited by: 13
Author(s): Andrea Hahn, Katrine Whiteson, Thomas J. Davis, Joann Phan, Iman Sami, Anastassios C. Koumbourlis, Robert J. Freishtat, Keith A. Crandall, Heather D. Bean
Software Mentions: 4
Published: over 4 years ago
10.3389/fimmu.2020.01192
Behçet's Disease Under Microbiotic Surveillance? A Combined Analysis of Two Cohorts of Behçet's Disease Patients
Cited by: 21
Author(s): Tim B. van der Houwen, Jan A. M. van Laar, Jasper H Kappen, P. Martin van Hagen, Marcel R. de Zoete, Guus H. van Muijlwijk, Roos-Marijn Berbers, Ad C. Fluit, Malbert R. C. Rogers, James Groot, C. Marijn Hazelbag, Clarissa Consolandi, Marco Severgnini, Clelia Peano, Mario Milco D’Elios, Giacomo Emmi, Helen L. Leavis
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-021-82362-6
Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet
Cited by: 11
Author(s): Kelsey E. Witt, Karthik Yarlagadda, Julie M. Allen, Alyssa C. Bader, Mary Simon, Seppe Kuehn, Kelly S. Swanson, Tzu Wen L. Cross, Kristin M. Hedman, Stanley H. Ambrose, Ripan S. Malhi
Software Mentions: 4
Published: almost 4 years ago
10.3389/fcimb.2018.00361
Comparative Analysis of the Microbial Profiles in Supragingival Plaque Samples Obtained From Twins With Discordant Caries Phenotypes and Their Mothers
Cited by: 11
Author(s): Yuqiao Zheng, Meng Zhang, Jin Li, Yuhong Li, Fei Teng, Han Jiang, Minquan Du
Software Mentions: 4
Published: about 6 years ago
10.3389/fcimb.2021.533528
Changes in the Human Gut Microbiota Associated With Colonization by Blastocystis sp. and Entamoeba spp. in Non-Industrialized Populations
Cited by: 23
Author(s): Gaël Even, Ana Lokmer, Jules Rodrigues, Christophe Audebert, Éric Viscogliosi, Laure Ségurel, Magali Chabé
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-79055-x
Simultaneous allergic traits in dogs and their owners are associated with living environment, lifestyle and microbial exposures
Cited by: 13
Author(s): Jenni Lehtimäki, Hanna Sinkko, Anna Hielm‐Björkman, Tiina Laatikainen, Lasse Ruokolainen, Hannes Lohi
Software Mentions: 4
Published: almost 4 years ago
10.3390/microorganisms9061157
Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?
Cited by: 5
Author(s): Elsa Gadoin, Lucile Durand, Aurélie Guillou, Sandrine Crochemore, Thierry Bouvier, Emmanuelle Roque, Laurent Dagorn, Jean‐Christophe Auguet, Antoinette Adingra, Christelle Desnues, Yvan Bettarel
Software Mentions: 4
Published: over 3 years ago
10.3389/fcimb.2021.663068
Taxonomic and Functional Dysregulation in Salivary Microbiomes During Oral Carcinogenesis
Cited by: 7
Author(s): Jiung Wen Chen, Jer Horng Wu, Wei Fan Chiang, Yuh Ling Chen, Wei Wu, Li-Wha Wu
Software Mentions: 4
Published: about 3 years ago
10.1186/s12859-021-04061-3
ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries
Cited by: 2
Author(s): Liangliang Zhang, Yushu Shi, Kim Anh, Christine B. Peterson, Robert R. Jenq
Software Mentions: 4
Published: over 3 years ago
10.1186/s12575-021-00148-6
Nasopharyngeal Microbiota in SARS-CoV-2 Positive and Negative Patients
Cited by: 22
Author(s): Phillip A. Engen, Ankur Naqib, Cheryl Jennings, Stefan J. Green, Alan Landay, Ali Keshavarzian, Robin M. Voigt
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-78165-w
Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 4 years ago
10.3389/fcell.2021.711253
TLR5 Supports Development of Placental Labyrinthine Zone in Mice
Cited by: 1
Author(s): Jensen H.C. Yiu, Samson Wing Ming Cheung, Jieling Cai, Kam-Suen Chan, Jing Chen, Lai Yee Cheong, Hau-Tak Chau, Aimin Xu, Raymond Li, Connie W. Woo
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-77907-0
Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life
Cited by: 6
Author(s): Tamsin Lyons, Hanne Jahns, Joseph Brady, Eóin O’Hara, Sinéad M. Waters, David A. Kenny, Evelyn Doyle, Kieran G. Meade
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40168-018-0603-4
A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?
Cited by: 238
Author(s): Jessica D. Forbes, Chih-Yu Chen, Natalie Knox, Ruth Ann Marrie, Hani El-Gabalawy, Teresa de Kievit, Michelle J. Alfa, Çharles N. Bernstein, Gary Van Domselaar
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-020-61817-2
Blood meal sources and bacterial microbiome diversity in wild-caught tsetse flies
Cited by: 21
Author(s): Alex Kiarie Gaithuma, Junya Yamagishi, Kyoko Hayashida, Nobuyoshi Kawai, Boniface Namangala, Chihiro Sugimoto
Software Mentions: 4
Published: over 4 years ago
10.3389/fcell.2020.570484
Fine Particulate Matter Exposure Alters Pulmonary Microbiota Composition and Aggravates Pneumococcus-Induced Lung Pathogenesis
Cited by: 18
Author(s): Yu Wen Chen, Shiao Wen Li, Chia Der Lin, Mei Huang, Hwai Jeng Lin, Chia Yin Chin, Yi Ru Lai, Cheng Hsun Chiu, Chia Yu Yang, Chih Ho Lai
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-020-78525-6
Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia
Cited by: 11
Author(s): Katrina West, Zoe T. Richards, Euan S. Harvey, Robert Susac, Alicia Grealy, Michael Bunce
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-60304-y
Tendentious effects of automated and manual metagenomic DNA purification protocols on broiler gut microbiome taxonomic profiling
Cited by: 15
Author(s): Gábor Fidler, Emese Tolnai, Anikó Stágel, Judit Remenyik, László Stündl, Ferenc Gál, Sándor Bíró, Melinda Paholcsek
Software Mentions: 4
Published: over 4 years ago
10.3389/fmed.2019.00201
Vaginal Microbiome Signature Is Associated With Spontaneous Preterm Delivery
Cited by: 50
Author(s): Keli Hočevar, Aleš Maver, Marijana Šimić, Alenka Hodžić, Alexander G. Haslberger, Tanja Premru Seršen, Borut Peterlin
Software Mentions: 4
Published: about 5 years ago
10.6026/97320630016567
Bacterial community dynamics with rhizosphere of Calotropis procera and Senna alexandrina desert plants in Saudi Arabia
Cited by: 4
Author(s): Diana A. Al-Quwaie
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-020-61092-1
Tuning up microbiome analysis to monitor WWTPs’ biological reactors functioning
Cited by: 35
Author(s): Miguel de Celis, Ignacio Belda, Rüdiger Ortiz‐Álvarez, Lucía Arregui, Domingo Marquina, Susana Serrano, Andrés de la Oliva Santos
Software Mentions: 4
Published: over 4 years ago
10.1186/s40168-019-0707-5
Comparison of the microbiomes of two drinking water distribution systems—with and without residual chloramine disinfection
Cited by: 55
Author(s): Michael B. Waak, Raymond M. Hozalski, Cynthia Hallé, Timothy M. LaPara
Software Mentions: 4
Published: over 5 years ago
10.1186/s40168-020-00859-0
Engineering CRISPR/Cas9 to mitigate abundant host contamination for 16S rRNA gene-based amplicon sequencing
Cited by: 22
Author(s): Luyang Song, Kabin Xie
Software Mentions: 4
Published: over 4 years ago
10.1002/advs.201902862
Gut Microbial Signatures Can Discriminate Unipolar from Bipolar Depression
Cited by: 75
Author(s): Peng Zheng, Jian Yang, Yifan Li, Jing Wu, Weiwei Liang, Bangmin Yin, Xunmin Tan, Yu Huang, Tingjia Chai, Hanping Zhang, Jiajia Duan, Jingjing Zhou, Zuoli Sun, Chen Xu, Subhi Marwari, Jianbo Lai, Tingting Huang, Yanli Du, Peifen Zhang, Seth W. Perry, Ma‐Li Wong, Júlio Licinio, Shaohua Hu, Peng Xie, Gang Wang
Software Mentions: 4
Published: almost 5 years ago
10.1186/s40168-021-01055-4
Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Cited by: 18
Author(s): Jennifer M. Baker, Kevin J. Hinkle, Roderick A. McDonald, Christopher Brown, Nicole R. Falkowski, Gary B. Huffnagle, Robert P. Dickson
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-59620-0
Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms
Cited by: 5
Author(s): Takashi Shirouzu, Shiro Matsuoka, Hideyuki Doi, Nobuaki Nagata, Masayuki Ushio, Kentaro Hosaka
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pone.0182814
Honey bee (Apis mellifera) colony health and pathogen composition in migratory beekeeping operations involved in California almond pollination
Cited by: 53
Author(s): William Glenny, Ian Cavigli, Katie F. Daughenbaugh, Rosemarie Radford, Susan E. Kegley, Michelle L. Flenniken
Software Mentions: 4
Published: over 7 years ago
10.1038/s41598-020-59016-0
Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study
Cited by: 71
Author(s): Zachary M. Burcham, Nicole L. Garneau, Sarah S. Comstock, Robin M. Tucker, Rob Knight, Jessica L. Metcalf
Software Mentions: 4
Published: almost 5 years ago
10.1186/s40168-015-0133-2
The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles
Cited by: 64
Author(s): Yasir Tarabichi, K. Li, Shishan Hu, Cam Nguyen, X. Wang, David Elashoff, Kazima Saira, Bryan Frank, Monika Bihan, Elodie Ghedin, Barbara A. Methé, Jane C. Deng
Software Mentions: 4
Published: almost 9 years ago