Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.3390/microorganisms9020411
Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable
Cited by: 12
Author(s): Mark McCauley, Marlène Chiarello, Carla L. Atkinson, Colin R. Jackson
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-018-20347-8
Characterization of soil bacterial, archaeal and fungal communities inhabiting archaeological human-impacted layers at Monte Iato settlement (Sicily, Italy)
Cited by: 20
Author(s): J.A. Siles, Birgit Öhlinger, Tomáš Cajthaml, Erich Kistler, Rosa Margesin
Software Mentions: 4
Published: almost 7 years ago
10.1038/s41598-018-24040-8
Soil pH and plant diversity shape soil bacterial community structure in the active layer across the latitudinal gradients in continuous permafrost region of Northeastern China
Cited by: 80
Author(s): Baihui Ren, Yuanman Hu, Baodong Chen, Ying Zhang, Jan Thiele, Ronghua Shi, Miao Liu, Rencang Bu
Software Mentions: 4
Published: over 6 years ago
10.1186/s12940-018-0394-x
The Ramazzini Institute 13-week pilot study on glyphosate and Roundup administered at human-equivalent dose to Sprague Dawley rats: effects on the microbiome
Cited by: 78
Author(s): Qixing Mao, Fabiana Manservisi, Simona Panzacchi, Daniele Mandrioli, I Menghetti, Andrea Vornoli, Luciano Bua, Laura Falcioni, Corina Lesseur, Jia Chen, Fiorella Belpoggi, Jianzhong Hu
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-018-26423-3
Probiotic supplementation and associated infant gut microbiome and health: a cautionary retrospective clinical comparison
Cited by: 68
Author(s): Candice Quin, Mehrbod Estaki, Deanna M. Vollman, Jacqueline A. Barnett, S K Gill
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-017-14978-6
Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
Cited by: 72
Author(s): Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, Hiroki Yamanaka
Software Mentions: 4
Published: about 7 years ago
10.3390/microorganisms9020357
Soil Bacterial Diversity Is Positively Correlated with Decomposition Rates during Early Phases of Maize Litter Decomposition
Cited by: 18
Author(s): Akane Chiba, Yoshitaka Uchida, Susanne Kublik, Gisle Vestergaard, Franz Buegger, Michael Schloter, Stefanie Schulz
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-017-12265-y
Nutrient quality of vertebrate dung as a diet for dung beetles
Cited by: 46
Author(s): Kevin Frank, Adrian Brückner, Andrea Hilpert, Michael Heethoff, Nico Blüthgen
Software Mentions: 4
Published: about 7 years ago
10.3389/fmicb.2020.01953
Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe
Cited by: 106
Author(s): Leho Tedersoo, Sten Anslan, Mohammad Bahram, Rein Drenkhan, Karin Pritsch, Franz Buegger, Allar Padari, Niloufar Hagh‐Doust, Vladimir Mikryukov, Daniyal Gohar, Rasekh Amiri, Indrek Hiiesalu, Reimo Lutter, Raul Rosenvald, Elisabeth Rähn, Kalev Adamson, Tiia Drenkhan, Hardi Tullus, Katrin Jürimaa, Ivar Sibul, Eveli Otsing, Sergei Põlme, Marek Metslaid, Kaire Loit, Ahto Agan, Rasmus Puusepp, Inge Varik, Urmas Kõljalg, Kessy Abarenkov
Software Mentions: 4
Published: about 4 years ago
10.1007/s00253-018-8932-6
Insights into microbial communities mediating the bioremediation of hydrocarbon-contaminated soil from an Alpine former military site
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-017-10560-2
The molecular basis of differential morphology and bleaching thresholds in two morphs of the coral Pocillopora acuta
Cited by: 13
Author(s): Hillary A. Smith, Hannah E. Epstein, Gergely Torda
Software Mentions: 4
Published: about 7 years ago
10.3390/microorganisms9061157
Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?
Cited by: 5
Author(s): Elsa Gadoin, Lucile Durand, Aurélie Guillou, Sandrine Crochemore, Thierry Bouvier, Emmanuelle Roque, Laurent Dagorn, Jean‐Christophe Auguet, Antoinette Adingra, Christelle Desnues, Yvan Bettarel
Software Mentions: 4
Published: over 3 years ago
10.1186/s12575-021-00148-6
Nasopharyngeal Microbiota in SARS-CoV-2 Positive and Negative Patients
Cited by: 22
Author(s): Phillip A. Engen, Ankur Naqib, Cheryl Jennings, Stefan J. Green, Alan Landay, Ali Keshavarzian, Robin M. Voigt
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.2975
Variation in species‐level plant functional traits over wetland indicator status categories
Cited by: 19
Author(s): Miles E. McCoy-Sulentic, Thomas E. Kolb, David M. Merritt, Emily C. Palmquist, Barbara E. Ralston, Daniel A. Sarr
Software Mentions: 4
Published: over 7 years ago
10.1186/s40168-018-0603-4
A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?
Cited by: 238
Author(s): Jessica D. Forbes, Chih-Yu Chen, Natalie Knox, Ruth Ann Marrie, Hani El-Gabalawy, Teresa de Kievit, Michelle J. Alfa, Çharles N. Bernstein, Gary Van Domselaar
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-017-08109-4
Cross-scale habitat structure driven by coral species composition on tropical reefs
Cited by: 35
Author(s): Laura E. Richardson, Nicholas A. J. Graham, Andrew S. Hoey
Software Mentions: 4
Published: over 7 years ago
10.1186/s40104-021-00617-8
Effects of supplemental xylanase and xylooligosaccharides on production performance and gut health variables of broiler chickens
Cited by: 27
Author(s): Amit Kumar Singh, Birendra Mishra, M.R. Bedford
Software Mentions: 4
Published: about 3 years ago
10.1186/s40104-020-00459-w
Eggshell and environmental bacteria contribute to the intestinal microbiota of growing chickens
Cited by: 33
Author(s): Joel J. Maki, Elizabeth Bobeck, Matthew J. Sylte, Torey Looft
Software Mentions: 4
Published: over 4 years ago
10.1186/s40104-020-00498-3
Dietary Bacillus spp. enhanced growth and disease resistance of weaned pigs by modulating intestinal microbiota and systemic immunity
Cited by: 34
Author(s): Yijie He, Cynthia Jinno, Kwang‐Wook Kim, Zhaohai Wu, Bin Tan, Xunde Li, Rose Whelan, Yanhong Liu
Software Mentions: 4
Published: about 4 years ago
10.6026/97320630016567
Bacterial community dynamics with rhizosphere of Calotropis procera and Senna alexandrina desert plants in Saudi Arabia
Cited by: 4
Author(s): Diana A. Al-Quwaie
Software Mentions: 4
Published: about 4 years ago
10.1186/s40104-021-00545-7
Evaluation of curcumin and copper acetate against Salmonella Typhimurium infection, intestinal permeability, and cecal microbiota composition in broiler chickens
Cited by: 20
Author(s): Anaisa A. Leyva-Diaz, Daniel Hernández-Patlán, Bruno Solís-Cruz, Bishnu Adhikari, Young Min Kwon, Juan D. Latorre, Xóchitl Hernández-Velasco, Benjamín Fuente-Martínez, Billy M. Hargis, Raquel López‐Arellano, Guillermo Téllez–Isaías
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40168-019-0707-5
Comparison of the microbiomes of two drinking water distribution systems—with and without residual chloramine disinfection
Cited by: 55
Author(s): Michael B. Waak, Raymond M. Hozalski, Cynthia Hallé, Timothy M. LaPara
Software Mentions: 4
Published: over 5 years ago
10.1186/s40168-020-00859-0
Engineering CRISPR/Cas9 to mitigate abundant host contamination for 16S rRNA gene-based amplicon sequencing
Cited by: 22
Author(s): Luyang Song, Kabin Xie
Software Mentions: 4
Published: over 4 years ago
10.1002/advs.201902862
Gut Microbial Signatures Can Discriminate Unipolar from Bipolar Depression
Cited by: 75
Author(s): Peng Zheng, Jian Yang, Yifan Li, Jing Wu, Weiwei Liang, Bangmin Yin, Xunmin Tan, Yu Huang, Tingjia Chai, Hanping Zhang, Jiajia Duan, Jingjing Zhou, Zuoli Sun, Chen Xu, Subhi Marwari, Jianbo Lai, Tingting Huang, Yanli Du, Peifen Zhang, Seth W. Perry, Ma‐Li Wong, Júlio Licinio, Shaohua Hu, Peng Xie, Gang Wang
Software Mentions: 4
Published: almost 5 years ago
10.1186/s40168-021-01055-4
Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Cited by: 18
Author(s): Jennifer M. Baker, Kevin J. Hinkle, Roderick A. McDonald, Christopher Brown, Nicole R. Falkowski, Gary B. Huffnagle, Robert P. Dickson
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2014.00752
Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage
Cited by: 58
Author(s): Björn Breidenbach, Ralf Conrad
Software Mentions: 4
Published: almost 10 years ago
10.3390/insects12010011
Olfactory Choice for Decomposition Stage in the Burying Beetle Nicrophorus vespilloides: Preference or Aversion?
Cited by: 4
Author(s): Pablo J. Delclós, Tammy L. Bouldin, Jeffery K. Tomberlin
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2019.03007
Core and Differentially Abundant Bacterial Taxa in the Rhizosphere of Field Grown Brassica napus Genotypes: Implications for Canola Breeding
Cited by: 37
Author(s): Zelalem M. Taye, Bobbi L. Helgason, Jennifer K. Bell, Charlotte E. Norris, Sally Vail, Stephen J. Robinson, Isobel A. P. Parkin, Melissa M. Arcand, Steven D. Mamet, Matthew G. Links, Tanner Dowhy, Steven D. Siciliano, Eric G. Lamb
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12985-020-01394-y
Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria
Cited by: 21
Author(s): Cody Glickman, Sara M. Kammlade, Nabeeh A. Hasan, L. Elaine Epperson, Rebecca M. Davidson, Michael Strong
Software Mentions: 4
Published: over 4 years ago
10.1186/s40168-015-0133-2
The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles
Cited by: 64
Author(s): Yasir Tarabichi, K. Li, Shishan Hu, Cam Nguyen, X. Wang, David Elashoff, Kazima Saira, Bryan Frank, Monika Bihan, Elodie Ghedin, Barbara A. Methé, Jane C. Deng
Software Mentions: 4
Published: almost 9 years ago
10.3390/insects11010026
How Bees Respond Differently to Field Margins of Shrubby and Herbaceous Plants in Intensive Agricultural Crops of the Mediterranean Area
Cited by: 11
Author(s): J. Sánchez, Aline Carrasco, Michelangelo La Spina, María Pérez‐Marcos, F. J. Ortiz-Sánchez
Software Mentions: 4
Published: almost 5 years ago
10.1128/AEM.02658-18
Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
Cited by: 5
Author(s): Urse Scheel Krüger, Arnaud Dechesne, Friedhelm Bak, Nora Badawi, Ole Nybroe, Jens Aamand
Software Mentions: 4
Published: over 5 years ago
10.1186/s12917-020-02430-3
Gut microbiota profiles of commercial laying hens infected with tumorigenic viruses
Cited by: 1
Author(s): Xianhua Wan, Laipeng Xu, Xiaolun Sun, Hui Li, Fengbin Yan, Ruili Han, Hong Li, Zhuanjian Li, Yadong Tian, Xiaojun Liu, Xin Kang, Zhenya Wang, Yanbin Wang
Software Mentions: 4
Published: over 4 years ago
10.1186/s40168-019-0724-4
Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight
Cited by: 65
Author(s): Peng Jiang, Stefan J. Green, George E. Chlipala, Fred W. Turek, Martha Hotz Vitaterna
Software Mentions: 4
Published: over 5 years ago
10.1002/ece3.2698
Anthropogenic noise changes arthropod abundances
Cited by: 46
Author(s): Jessie P. Bunkley, Christopher J. W. McClure, Akito Y. Kawahara, Clinton D. Francis, Jesse R. Barber
Software Mentions: 4
Published: over 7 years ago
10.3389/fmicb.2019.00512
Mycobiome Sequencing and Analysis Applied to Fungal Community Profiling of the Lower Respiratory Tract During Fungal Pathogenesis
Cited by: 33
Author(s): Lisa R. McTaggart, John W. Copeland, Anuradha Surendra, Pauline W. Wang, Shahid Husain, Bryan Coburn, David S. Guttman, Julianne V. Kus
Software Mentions: 4
Published: over 5 years ago
10.1186/s40168-021-01115-9
Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis
Cited by: 181
Author(s): Zhenhua Wu, Shimeng Huang, Tiantian Li, Na Li, Dandan Han, Bing Zhang, Zhenjiang Xu, Shiyi Zhang, Jiaman Pang, Shilan Wang, Guolong Zhang, Jiangchao Zhao, Junjun Wang
Software Mentions: 4
Published: about 3 years ago
10.1186/s40168-018-0400-0
Effects of predation stress and food ration on perch gut microbiota
Cited by: 47
Author(s): Yinghua Zha, Alexander Eiler, Frank Johansson, Richard Svanbäck
Software Mentions: 4
Published: almost 7 years ago
10.1186/s42523-021-00076-6
Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets
Cited by: 23
Author(s): Kasun H. Bodawatta, Inga Freiberga, Kateřina Pužejová, Kateřina Sam, Michael Poulsen, Knud A. Jønsson
Software Mentions: 4
Published: almost 4 years ago
10.3390/insects10120446
The Response of Neotropical Dragonflies (Insecta: Odonata) to Local and Regional Abiotic Factors in Small Streams of the Amazon
Cited by: 21
Author(s): José Max Barbosa de Oliveira, Karina Dias-Silva, Maria Alexandra Teodósio, Leandro Juen
Software Mentions: 4
Published: almost 5 years ago
10.1186/s13099-014-0039-8
Probiotics and virulent human rotavirus modulate the transplanted human gut microbiota in gnotobiotic pigs
Cited by: 44
Author(s): Husen Zhang, Haifeng Wang, Megan Shepherd, Ke Wen, Guohua Li, Xing-Dong Yang, Jacob Kocher, Ernawati Arifin Giri-Rachman, Allan W. Dickerman, Robert E. Settlage, Lijuan Yuan
Software Mentions: 4
Published: about 10 years ago
10.1186/s40168-016-0178-x
Variable responses of human microbiomes to dietary supplementation with resistant starch
Cited by: 257
Author(s): Arvind Venkataraman, Jessica R. Sieber, Alex W. Schmidt, Clive Waldron, Kevin R. Theis, Thomas M. Schmidt
Software Mentions: 4
Published: over 8 years ago
10.1186/s40168-019-0645-2
Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month
Cited by: 99
Author(s): Nina Iszatt, Stefan Janssen, Virissa Lenters, Cecilie Dahl, Hein Stigum, Rob Knight, Siddhartha Mandal, Shyamal Peddada, Antonio González, Tore Midtvedt, Merete Eggesbø
Software Mentions: 4
Published: over 5 years ago
10.1186/s42523-021-00101-8
Effect of sequentially fed high protein, hydrolyzed protein, and high fiber diets on the fecal microbiota of healthy dogs: a cross-over study
Cited by: 9
Author(s): Lina María Martínez-López, Amy Pepper, Rachel Pilla, Andrew Woodward, Jan S. Suchodolski, Caroline Mansfield
Software Mentions: 4
Published: over 3 years ago
10.1080/19490976.2021.1936378
Effect of COVID-19 precautions on the gut microbiota and nosocomial infections
Cited by: 9
Author(s): Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, Harika Nalluri, Thomas Kaiser, Shernan G. Holtan, Alexander Khoruts, Daniel J. Weisdorf, Christopher Staley
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40168-018-0518-0
Bacterial microbiota protect an invasive bark beetle from a pine defensive compound
Cited by: 47
Author(s): Chihang Cheng, Jacob D. Wickham, Li Chen, Dandan Xu, Min Lü, Jianghua Sun
Software Mentions: 4
Published: over 6 years ago
10.1080/19490976.2021.1875797
Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Cited by: 6
Author(s): Nishat Tasnim, Candice Quin, S K Gill, Chunping Dai, Miranda M. Hart, Deanna L. Gibson
Software Mentions: 4
Published: almost 4 years ago
10.3389/fnut.2021.640100
Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome
Cited by: 7
Author(s): Jason W. Arnold, Hunter D. Whittington, Sue F. Dagher, Jeffery Roach, M. Andrea Azcárate-Peril, José M. Bruno-Bárcena
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.6989
Effects of maternal genotypic identity and genetic diversity of the red mangrove <i>Rhizophora mangle</i> on associated soil bacterial communities: A field‐based experiment
Cited by: 9
Author(s): Hayley Craig, John Paul Kennedy, Donna J. Devlin, Richard D. Bardgett, Jennifer K. Rowntree
Software Mentions: 4
Published: about 4 years ago
10.1186/s40168-020-0788-1
Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Cited by: 37
Author(s): Sven-Bastiaan Haange, Nico Jehmlich, Ute Krügel, Constantin A. Hintschich, Dorothee Wehrmann, Mohammed K. Hankir, Florian Seyfried, Jean Froment, Thomas Hübschmann, Susann Müller, Dirk K. Wissenbach, Kang Kang, Christian Buettner, Gianni Panagiotou, Matthias Noll, Ulrike Rolle-Kampczyk, Wiebke Fenske, Martin von Bergen
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12884-021-03855-w
Association between premature ovarian insufficiency and gut microbiota
Cited by: 15
Author(s): Jiaman Wu, Yuanyuan Zhuo, Yu-Lei Liu, Yan Chen, Yan Ning, Jilong Yao
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2021.729047
Rhizosphere Soil Bacterial Communities of Continuous Cropping-Tolerant and Sensitive Soybean Genotypes Respond Differently to Long-Term Continuous Cropping in Mollisols
Cited by: 12
Author(s): Ming Yuan, Tao Yu, Qihan Shi, Han Dong-wei, Kanchao Yu, Lianxia Wang, Shurong Wang, Xiang Hao, Ronghui Wen, Hai Nian, Tengxiang Lian
Software Mentions: 4
Published: about 3 years ago
10.1186/s12870-018-1602-0
Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.
Cited by: 31
Author(s): Andriy Kovalchuk, Zhen Zeng, Rajendra P. Ghimire, Minna Kivimäenpää, Tommaso Raffaello, Mengxia Liu, Mukrimin Mukrimin, Risto Kasanen, Hui Sun, Riitta Julkunen‐Tiitto, Jarmo K. Holopainen, Fred O. Asiegbu
Software Mentions: 4
Published: almost 6 years ago
10.1186/s40168-016-0214-x
Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants
Cited by: 140
Author(s): Katherine E. Gregory, Buck S. Samuel, Pearl Houghteling, Shan Guru, Frederick M. Ausubel, Ruslan I. Sadreyev, W. Allan Walker
Software Mentions: 4
Published: almost 8 years ago
10.1186/s40168-018-0515-3
Breast cancer in postmenopausal women is associated with an altered gut metagenome
Cited by: 157
Author(s): Jia Zhu, Ming Liao, Ziting Yao, Wenying Liang, Qibin Li, Jianlun Liu, Huawei Yang, Yinan Ji, Wei Wei, Aihua Tan, Sai Liang, Yang Chen, Haisong Lin, Xinyuan Zhu, Shengzhu Huang, Jiarong Tian, Rongjiang Tang, Qiuyan Wang, Zengnan Mo
Software Mentions: 4
Published: over 6 years ago
10.3934/microbiol.2019.1.62
Stability of temperate coral &lt;em&gt;Astrangia poculata&lt;/em&gt; microbiome is reflected across different sequencing methodologies
Cited by: 5
Author(s): Dawn B. Goldsmith, Zoe A. Pratte, Christina A. Kellogg, Sara E. Snader, Koty Sharp
Software Mentions: 4
Published: almost 6 years ago
10.1128/AEM.01336-19
Surface Water Microbial Community Response to the Biocide 2,2-Dibromo-3-Nitrilopropionamide, Used in Unconventional Oil and Gas Extraction
Cited by: 11
Author(s): Maria Fernanda Campa, Stephen M. Techtmann, Mallory P. Ladd, Jun Yan, Megan Patterson, Amanda Garcia de Matos Amaral, Kimberly E. Carter, Nikea Ulrich, Christopher J. Grant, Robert L. Hettich, Regina Lamendella, Terry C. Hazen
Software Mentions: 4
Published: about 5 years ago
10.1186/s40168-019-0778-3
Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community
Cited by: 66
Author(s): Jiajie Feng, Cong Wang, Jiesi Lei, Yunfeng Yang, Qingyun Yan, Xuelong Zhou, Xuanyu Tao, Daliang Ning, Mengting Yuan, Yujia Qin, Zhou Shi, Xue Guo, Zhili He, Joy D. Van Nostrand, Liyou Wu, Rosvel G. Bracho-Garillo, C. Ryan Penton, James R. Cole, Konstantinos T. Konstantinidis, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Software Mentions: 4
Published: almost 5 years ago
10.1093/icb/icz007
Leukocyte Profiles Reflect Geographic Range Limits in a Widespread Neotropical Bat
Cited by: 22
Author(s): Daniel J. Becker, Cecilia Nachtmann, Hernán Darío Argibay, Gonzalo Núñez, Marina Escalera-Zamudio, Jorge Carrera, Carlos Tello, Erik Winiarski, Alex D. Greenwood, Maria L. Méndez-Ojeda, Elizabeth Loza-Rubio, Anne Lee, Benoı̂t de Thoisy, Gábor Á. Czirják, Raina K. Plowright, Sonia Altizer, Daniel G. Streicker
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2019.01850
Disease Specific Bacterial Communities in a Coralline Algae of the Northwestern Mediterranean Sea: A Combined Culture Dependent and -Independent Approach
Cited by: 13
Author(s): Gaëlle Quéré, Laurent Intertaglia, Claude Payri, Pierre E. Galand
Software Mentions: 4
Published: about 5 years ago
10.1002/ece3.7184
Soil physicochemical properties drive the variation in soil microbial communities along a forest successional series in a degraded wetland in northeastern China
Cited by: 27
Author(s): Xin Sui, Rongtao Zhang, Beat Frey, Libin Yang, Yingnan Liu, Hongwei Ni, Mai‐He Li
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2019.01988
Evaluation of the Nasopharyngeal Microbiota in Beef Cattle Transported to a Feedlot, With a Focus on Lactic Acid-Producing Bacteria
Cited by: 20
Author(s): Samat Amat, Devin B. Holman, Edouard Timsit, Timothy Schwinghamer, Trevor W. Alexander
Software Mentions: 4
Published: about 5 years ago
10.1002/ece3.5575
Protection from illegal fishing and shark recovery restructures mesopredatory fish communities on a coral reef
Cited by: 18
Author(s): Conrad W. Speed, Matthew J. Rees, Katherine Cure, Brigit I. Vaughan, Mark G. Meekan
Software Mentions: 4
Published: over 5 years ago
10.1186/s42523-021-00098-0
The microbiota of healthy dogs demonstrates individualized responses to synbiotic supplementation in a randomized controlled trial
Cited by: 6
Author(s): Jirayu Tanprasertsuk, Aashish R. Jha, Justin Shmalberg, Roshonda B. Jones, Lee M. Perry, Heather Maughan, Ryan W. Honaker
Software Mentions: 4
Published: over 3 years ago
10.1186/s12862-017-0885-3
Grandparental immune priming in the pipefish Syngnathus typhle
Cited by: 39
Author(s): Anne Beemelmanns, Olivia Roth
Software Mentions: 4
Published: almost 8 years ago
10.1186/s40168-018-0446-z
Reproducible protocols for metagenomic analysis of human faecal phageomes
Cited by: 127
Author(s): Andrey N. Shkoporov, Feargal J. Ryan, Lorraine A. Draper, Amanda Forde, Stephen R. Stockdale, Karen Daly, Siobhan A. McDonnell, James A. Nolan, Thomas D.S. Sutton, Marion Dalmasso, A. McCann, R. Paul Ross, Colin Hill
Software Mentions: 4
Published: over 6 years ago
10.3389/fmicb.2017.00457
Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts
Cited by: 19
Author(s): Irene Stefanini, Silvia Carlin, Noemi Tocci, Davide Albanese, Claudio Donati, Pietro Franceschi, Michele Paris, Alberto Zenato, Silvano Tempesta, Alberto Bronzato, Urška Vrhovšek, Fulvio Mattivi, Duccio Cavalieri
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pone.0199245
Diverse effects of degree of urbanisation and forest size on species richness and functional diversity of plants, and ground surface-active ants and spiders
Cited by: 58
Author(s): Ramona Laila Melliger, Brigitte Braschler, Hans‐Peter Rusterholz, Bruno Baur
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.6845
Aquatic beetles influence colonization of disparate taxa in small lentic systems
Cited by: 10
Author(s): Matthew R. Pintar, William J. Resetarits
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2021.726923
Genome-Resolved Metagenomics of the Chicken Gut Microbiome
Cited by: 25
Author(s): Maia Segura-Wang, Nikolaus Grabner, Andreas Koestelbauer, Viviana Klose, Mahdi Ghanbari
Software Mentions: 4
Published: over 3 years ago
10.3390/biomedicines8040081
A Protocol for the Multi-Omic Integration of Cervical Microbiota and Urine Metabolomics to Understand Human Papillomavirus (HPV)-Driven Dysbiosis
Cited by: 3
Author(s): Nataliya Chorna, Filipa Godoy-Vitorino
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.4742
Assessing eukaryotic biodiversity in the Florida Keys National Marine Sanctuary through environmental DNA metabarcoding
Cited by: 45
Author(s): Natalie A. Sawaya, Anni Djurhuus, Collin J. Closek, Megan Hepner, Emily Olesin, Lindsey A. Visser, Christopher R. Kelble, Katherine A. Hubbard, Mya Breitbart
Software Mentions: 4
Published: almost 6 years ago
10.1128/AEM.02673-20
The Effects of Soil Depth on the Structure of Microbial Communities in Agricultural Soils in Iowa (United States)
Cited by: 53
Author(s): Jingjie Hao, Yen Ning Chai, Lucas Dantas Lopes, Raziel A. Ordóñez, Emily E. Wright, Sotirios Archontoulis, Daniel P. Schachtman
Software Mentions: 4
Published: almost 4 years ago
10.1002/ece3.6529
In the foothill zone—<i>Sabanejewia balcanica</i>(Karaman 1922), in the lowland zone—<i>Sabanejewia bulgarica</i>(Drensky, 1928): Myth or reality?
Cited by: 6
Author(s): Peter Križek, Jan Mendel, Jakub Fedorčák, Ján Koščo
Software Mentions: 4
Published: over 4 years ago
10.1186/s12866-021-02122-4
Amplicon-based skin microbiome profiles collected by tape stripping with different adhesive film dressings: a comparative study
Cited by: 3
Author(s): Kazuhiro Ogai, Katsushi Shibata, N. Takahashi, Kohei Ogura, Shigefumi Okamoto, Junko Sugama
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40168-019-0776-5
Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities
Cited by: 55
Author(s): Eslam O. Osman, David J. Suggett, Christian R. Voolstra, D. Tye Pettay, Dave R. Clark, Claudia Pogoreutz, Eugenia M. Sampayo, Mark E. Warner, David J. Smith
Software Mentions: 4
Published: almost 5 years ago
10.3389/fmicb.2020.491425
Stream Microbial Community Structured by Trace Elements, Headwater Dispersal, and Large Reservoirs in Sub-Alpine and Urban Ecosystems
Cited by: 5
Author(s): Erin Jones, Natasha A. Griffin, Julia E. Kelso, Gregory T. Carling, Michelle A. Baker, Zachary T. Aanderud
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12866-021-02230-1
A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants
Cited by: 12
Author(s): Christophe Lay, Collins Wenhan Chu, Rikky W. Purbojati, Enzo Acerbi, Daniela I. Drautz–Moses, Paola Flórez de Sessions, Jié Song, Eliza Xin Pei Ho, Yee Jiun Kok, Xinyan Bi, Shuwen Chen, Shi Ya Mak, Mei Chien Chua, Angela Goh, Wen Chin Chiang, Rajeshwar Rao, Surasith Chaithongwongwatthana, Nipon Khemapech, Voranush Chongsrisawat, Rocı́o Martı́n, Yanqing Koh, Sachin R. Lohar, Ivan Chin Hin Tan, Wong Anng Anng, Jie Chen, Nana Bartke, Kaouther Ben-Amor, Ingrid B. Renes, Fiona Wong, Guus Roeselers, Ying Swan Ho, Martin L. Hibberd, Stephan C. Schuster, Jan Knol
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.5464
Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association
Cited by: 18
Author(s): Juliane Hartke, Philipp P. Sprenger, Jacqueline Sahm, Helena Winterberg, Jérôme Orivel, Hannes Baur, Till Beuerle, Thomas Schmitt, Barbara Feldmeyer, Florian Menzel
Software Mentions: 4
Published: over 5 years ago
10.1186/s12866-020-02002-3
Lifestyle modifications result in alterations in the gut microbiota in obese children
Cited by: 21
Author(s): Ky Young Cho
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12866-021-02119-z
Diversity and plant growth-promoting potential of (un)culturable bacteria in the Hedera helix phylloplane
Cited by: 7
Author(s): Vincent Stevens, Sofie Thijs, Jaco Vangronsveld
Software Mentions: 4
Published: over 3 years ago
10.1186/s13550-017-0318-8
Gut microbiota and physiologic bowel 18F-FDG uptake
Cited by: 16
Author(s): Ji Yeon Kang, Han Na Kim, Yoosoo Chang, Yeojun Yun, Seungho Ryu, Hocheol Shin, Hyung Lae Kim
Software Mentions: 4
Published: about 7 years ago
10.1128/AEM.02470-17
Influence of Pig Farming on the Human Nasal Microbiota: Key Role of Airborne Microbial Communities
Cited by: 59
Author(s): Julia G. Kraemer, Alban Ramette, Suzanne Aebi, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: over 6 years ago
10.15252/emmm.201707882
Household triclosan and triclocarban effects on the infant and maternal microbiome
Cited by: 67
Author(s): Jessica V. Ribado, Catherine Ley, Thomas D. Haggerty, Е. И. Ткаченко, Ami S. Bhatt, Julie Parsonnet
Software Mentions: 4
Published: about 7 years ago
10.1002/ece3.3248
Spatial patterns of hypolithic cyanobacterial diversity in Northern Australia
Cited by: 5
Author(s): Keith A. Christian, Mirjam Kaestli, Karen S. Gibb
Software Mentions: 4
Published: over 7 years ago
10.1128/AEM.00305-19
Bacterial and Fungal Endophytic Microbiomes of <i>Salicornia europaea</i>
Cited by: 46
Author(s): Bliss Ursula Furtado, Marcin Gołębiewski, Monika Skorupa, Piotr Hulisz, Katarzyna Hrynkiewicz
Software Mentions: 4
Published: over 5 years ago
10.1186/s40168-021-01082-1
Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching
Cited by: 10
Author(s): David E. Wilkins, Xinzhao Tong, Marcus H. Y. Leung, Christopher E. Mason, Patrick K. H. Lee
Software Mentions: 4
Published: over 3 years ago
10.1007/s13592-020-00758-1
Urbanisation is associated with reduced Nosema sp. infection, higher colony strength and higher richness of foraged pollen in honeybees
Cited by: 14
Author(s): Ash E. Samuelson, Richard J. Gill, Ellouise Leadbeater
Software Mentions: 4
Published: over 4 years ago
10.1002/eap.2089
Local‐ and landscape‐scale variables shape insect diversity in an urban biodiversity hot spot
Cited by: 36
Author(s): Benjamin J. Adams, Enjie Li, Christine A. Bahlai, Emily K. Meineke, Terrence P. McGlynn, Brian V. Brown
Software Mentions: 4
Published: over 4 years ago
10.1186/s40168-018-0537-x
Root exudates drive the soil-borne legacy of aboveground pathogen infection
Cited by: 294
Author(s): Jun Yuan, Jun Zhao, Teng Wen, Mingwen Zhao, Rong Li, Pim Goossens, Qiwei Huang, Yang Bai, Jorge M. Vivanco, George A. Kowalchuk, Roeland L. Berendsen
Software Mentions: 4
Published: about 6 years ago
10.1002/ece3.3288
Marine dock pilings foster diverse, native cryptobenthic fish assemblages across bioregions
Cited by: 20
Author(s): Simon J. Brandl, Jordan M. Casey, Nancy­ Knowlton­, J. Emmett Duffy
Software Mentions: 4
Published: over 7 years ago
10.1186/s40168-020-00997-5
Rhizosphere community selection reveals bacteria associated with reduced root disease
Cited by: 96
Author(s): Chuntao Yin, Juan M. Casa Vargas, Daniel Schlatter, Christina H. Hagerty, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 4
Published: over 3 years ago
10.1186/s13054-021-03623-4
Staphylococcus aureus ventilator-associated pneumonia in patients with COVID-19: clinical features and potential inference with lung dysbiosis
Cited by: 36
Author(s): Gennaro De Pascale, Flavio De Maio, Simone Carelli, Giulia De Angelis, Margherita Cacaci, Luca Montini, Giuseppe Bello, Salvatore Lucio Cutuli, Gabriele Pintaudi, Eloisa Sofia Tanzarella, Rikardo Xhemalaj, Domenico Luca Grieco, Mario Tumbarello, Maurizio Sanguinetti, Brunella Posteraro, Massimo Antonelli
Software Mentions: 4
Published: over 3 years ago
10.1186/s40168-018-0472-x
Gestational diabetes is associated with change in the gut microbiota composition in third trimester of pregnancy and postpartum
Cited by: 252
Author(s): Mie Crusell, Tue H. Hansen, Trine Nielsen, Kristine H. Allin, Malte Rühlemann, Peter Damm, Henrik Vestergaard, Christina Rørbye, Niklas Rye Jørgensen, Ole Bjarne Christiansen, Femke-Anouska Heinsen, André Franke, Jeannet Lauenborg, Oluf Pedersen
Software Mentions: 4
Published: over 6 years ago
10.3389/fmicb.2016.00902
Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem
Cited by: 27
Author(s): Francisco Dini‐Andreote, Maria Julia de Lima Brossi, Jan Dirk van Elsas, Joana Falccao Salles
Software Mentions: 4
Published: over 8 years ago
10.7717/peerj.2768
Diversity, taxonomic composition, and functional aspects of fungal communities in living, senesced, and fallen leaves at five sites across North America
Cited by: 44
Author(s): Jana M. U’Ren, A. Elizabeth Arnold
Software Mentions: 4
Published: almost 8 years ago
10.1007/s00338-017-1561-1
Palaeoecological records of coral community development on a turbid, nearshore reef complex: baselines for assessing ecological change
Cited by: 16
Author(s): Jamie A. Johnson, Chris T. Perry, Scott G. Smithers, Kyle M. Morgan, Nadiezhda Santodomingo, Kenneth G. Johnson
Software Mentions: 4
Published: over 7 years ago
10.1186/s12866-018-1341-2
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Cited by: 46
Author(s): Alison Vrbanac, Angelica M. Riestra, Alison Coady, Rob Knight, Victor Nizet, Kathryn A. Patras
Software Mentions: 4
Published: almost 6 years ago
10.3389/fmicb.2018.02590
Two Populations of Mites (Tyrophagus putrescentiae) Differ in Response to Feeding on Feces-Containing Diets
Cited by: 18
Author(s): Jan Hubert, Marta Nešvorná, B. Sopko, Jaroslav Smrž, Pavel B. Klimov, Tomáš Erban
Software Mentions: 4
Published: about 6 years ago
10.1093/aobpla/plab011
Presence of a dominant native shrub is associated with minor shifts in the function and composition of grassland communities in a northern savannah
Cited by: 0
Author(s): Isaac Peetoom Heida, Charlotte Brown, Margarete A Dettlaff, Kenneth Oppon, James Cahill
Software Mentions: 4
Published: almost 4 years ago