Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Modeler
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Modeler
Classes and Methods for Training and Using Binary Prediction
Models
4 versions
Latest release: over 5 years ago
1 dependent package
188 downloads last month
Papers Mentioning Modeler 310
10.3390/molecules19045243
Integrated Computational Tools for Identification of CCR5 Antagonists as Potential HIV-1 Entry Inhibitors: Homology Modeling, Virtual Screening, Molecular Dynamics Simulations and 3D QSAR AnalysisCited by: 12
Author(s): Suri Moonsamy, Radha Charan Dash, Mahmoud E. S. Soliman
Software Mentions: 1
Published: over 10 years ago
10.3390/molecules21070857
Molecular Dynamics Simulations to Investigate the Binding Mode of the Natural Product Liphagal with Phosphoinositide 3-Kinase αCited by: 4
Author(s): Yanjuan Gao, Ying Ma, Guangde Yang, Yiping Li
Software Mentions: 1
Published: over 8 years ago
10.3390/molecules24050924
Cross-Species Analysis of Glycosaminoglycan Binding Proteins Reveals Some Animal Models Are “More Equal” than OthersCited by: 9
Author(s): Eric D. Boittier, Neha S. Gandhi, Vito Ferro, Deirdre R. Coombe
Software Mentions: 1
Published: over 5 years ago
10.3390/molecules24234411
2-Arylidene-1-indandiones as Pleiotropic Agents with Antioxidant and Inhibitory Enzymes ActivitiesCited by: 14
Author(s): Olympia Kouzi, Eleni Pontiki, Dimitra Hadjipavlou‐Litina
Software Mentions: 1
Published: almost 5 years ago
10.3390/molecules22040542
Bisarylureas Based on 1H-Pyrazolo[3,4-d]pyrimidine Scaffold as Novel Pan-RAF Inhibitors with Potent Anti-Proliferative Activities: Structure-Based Design, Synthesis, Biological Evaluation and Molecular Modelling StudiesCited by: 7
Author(s): Yu Fu, Yuanyuan Wang, Shanhe Wan, Zhonghuang Li, Guangfa Wang, Jiajie Zhang, Xia Wu
Software Mentions: 1
Published: over 7 years ago
10.1002/mgg3.136
Functional consequences of transferrin receptor‐2 mutations causing hereditary hemochromatosis type 3Cited by: 18
Author(s): Ricky S. Joshi, Maya Shvartsman, Erica L. Moran, Sergio Lois, Jessica Aranda, Anna Barqué, Xavier de la Cruz, Miquel Bruguera, José Manuel Vagace, Guillermo Gervasini, Cristina Sanz, Mayka Sánchez
Software Mentions: 1
Published: over 9 years ago
10.3892/mmr.2014.2419
Homology modeling and molecular docking of human pituitary adenylate cyclase-activating polypeptide I receptorCited by: 8
Author(s): Lihua Wu, Wenhua Guang, Xiaojia Chen, Hongyu An
Software Mentions: 1
Published: over 10 years ago
10.1007/s12035-018-1174-x
Oxidation Resistance 1 Modulates Glycolytic Pathways in the Cerebellum via an Interaction with Glucose-6-Phosphate IsomeraseCited by: 11
Author(s): Mattéa J. Finelli, Teresa Páramo, Elisabete Pires, Brent J. Ryan, Richard Wade‐Martins, Philip C. Biggin, James McCullagh, Peter L. Oliver
Software Mentions: 1
Published: over 6 years ago
10.1186/1743-422X-3-34
Contribution of cysteine residues in the extracellular domain of the F protein of human respiratory syncytial virus to its functionCited by: 28
Author(s): Nicole D. Day, Patrick Branigan, Changbao Liu, Lester L. Gutshall, Jianquan Luo, José A. Melero, Robert T. Sarisky, Alfred M. Del Vecchio
Software Mentions: 1
Published: over 18 years ago
10.3390/v7102896
Identification and Application of Neutralizing Epitopes of Human Adenovirus Type 55 Hexon ProteinCited by: 12
Author(s): Xingui Tian, Qiang Ma, Zhongshan Jiang, Junfeng Huang, Qian Liu, Xiaomei Lü, Qi Luo, Zhichao Zhou
Software Mentions: 1
Published: about 9 years ago
10.3390/ph3072178
The Molecular Mechanisms of Anesthetic Action: Updates and Cutting Edge Developments from the Field of Molecular ModelingCited by: 11
Author(s): Edward Bertaccini
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pbio.1000408
A Genome-Scale DNA Repair RNAi Screen Identifies SPG48 as a Novel Gene Associated with Hereditary Spastic ParaplegiaCited by: 170
Author(s): Mikołaj Słabicki, Mirko Theis, Dragomir B. Krastev, Sergey A. Samsonov, Emeline Mundwiller, Magno Junqueira, Maciej Paszkowski‐Rogacz, Joan Teyra, Anne-Kristin Heninger, Ina Poser, Fabienne Prieur, Jérémy Truchetto, Christian Confavreux, Cécilia Marelli, Alexandra Dürr, J.-P. Camdessanché, Alexis Brice, Andrej Shevchenko, M. Teresa Pisabarro, Giovanni Stevanin, Frank Buchholz
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pbio.3001015
Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesisCited by: 35
Author(s): Chaoyi Xu, Donald R. Fischer, Sanela Rankovic, Wen Li, Robert A. Dick, Brent Runge, Roman Zadorozhnyi, Jin-Woo Ahn, Christopher Aiken, Tatyana Polenova, Alan Engelman, Zandrea Ambrose, Itay Rousso, Juan R. Perilla
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pcbi.1004870
Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody AffinityCited by: 25
Author(s): Lorenzo Asti, Guido Uguzzoni, Paolo Marcatili, Andrea Pagnani
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pntd.0007660
Amblyomma americanum serpin 27 (AAS27) is a tick salivary anti-inflammatory protein secreted into the host during feedingCited by: 22
Author(s): Lucas Tirloni, Tae Kwon Kim, Markus Berger, Carlos Termignoni, Itabajara da Silva Vaz, Albert Mulenga
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0071302
Regulatory Phosphorylation of Ikaros by Bruton's Tyrosine KinaseCited by: 16
Author(s): Hong Ma, Sanjive Qazi, Zahide Özer, Jian Zhang, Rita Ishkhanian, Fatih M. Uckun
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0011703
Identification of the Rheumatoid Arthritis Shared Epitope Binding Site on CalreticulinCited by: 37
Author(s): Song Ling, Andrew Cheng, Paul Pumpens, Marek Michalak, Joseph Holoshitz
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0018594
A Model of a MAPK•Substrate Complex in an Active Conformation: A Computational and Experimental ApproachCited by: 20
Author(s): Sunbae Lee, Mangalika Warthaka, Yan Cheng, Tamer S. Kaoud, Andrea Piserchio, Ranajeet Ghose, Pengyu Ren, Kevin N. Dalby
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0032938
Structure-Based High-Throughput Epitope Analysis of Hexon Proteins in B and C Species Human Adenoviruses (HAdVs)Cited by: 17
Author(s): Xiaohui Yuan, Ying-Chen Wang, Wenjing Jin, Binbin Zhao, Caifeng Chen, Jian Yang, Jingfei Wang, Yingying Guo, Jingjun Liu, Ding Zhang, Lulu Gong, Ying He
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0008470
Steered Molecular Dynamics Simulations Reveal the Likelier Dissociation Pathway of Imatinib from Its Targeting Kinases c-Kit and AblCited by: 40
Author(s): Lijun Yang, Jun Zou, Hongtu Xie, Linli Li, Yuquan Wei, Shengyong Yang
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0018956
Mutation Analysis of 2009 Pandemic Influenza A(H1N1) Viruses Collected in Japan during the Peak Phase of the PandemicCited by: 43
Author(s): Jean-Étienne Morlighem, Shintaro Aoki, Mami Kishima, Mitsue Hanami, Chihiro Ogawa, Amadu Jalloh, Yukari Takahashi, Yosuke Kawai, Satomi Saga, Eiji Hayashi, Toshiaki Ban, Shinyu Izumi, Akira Wada, Masayuki Mano, Masao Fukunaga, Yoshiyuki Kijima, Masashi Shiomi, Kaoru Inoue, Takeshi Hata, Yukihiro Koretsune, Kohsuke Kudo, Yuji Himeno, Aizan Hirai, Kazuo Takahashi, Yuko Sakai‐Tagawa, Kiyoko Iwatsuki‐Horimoto, Yoshihiro Kawaoka, Yoshihide Hayashizaki, Toshihisa Ishikawa
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0030315
Whole Genomes of Chandipura Virus Isolates and Comparative Analysis with Other RhabdovirusesCited by: 23
Author(s): Sarah Cherian, Rashmi Gunjikar, Arpita Banerjee, Sumit Kumar, Vidya A. Arankalle
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0011497
Diversity of Protein and mRNA Forms of Mammalian Methionine Sulfoxide Reductase B1 Due to Intronization and Protein ProcessingCited by: 10
Author(s): Xinwen Liang, Dmitri E. Fomenko, Deame Hua, Alaattin Kaya, Vadim N. Gladyshev
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0093008
Cross-Talk between Malarial Cysteine Proteases and Falstatin: The BC Loop as a Hot-Spot TargetCited by: 8
Author(s): Srinivasan Sundararaj, Ajay K. Saxena, Ruby Sharma, Kapil Vashisht, Supriya Sharma, Anup Anvikar, Rajnikant Dixit, Philip J. Rosenthal, Kailash C. Pandey
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0046507
Initial Characterization of the Pf-Int Recombinase from the Malaria Parasite Plasmodium falciparumCited by: 6
Author(s): Mehdi Ghorbal, Christine Scheidig-Benatar, Salma Bouizem, Christophe Thomas, Genevieve Paisley, Claire Faltermeier, Melanie Liu, Artur Scherf, José-Juan Lopez-Rubio, Deshmukh N. Gopaul
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0051047
PlcRa, a New Quorum-Sensing Regulator from Bacillus cereus, Plays a Role in Oxidative Stress Responses and Cysteine Metabolism in Stationary PhaseCited by: 25
Author(s): Eugénie Huillet, Marcel H. Tempelaars, Gwenaëlle André-Leroux, Pagakrong Wanapaisan, Ludovic Bridoux, Samira Makhzami, Watanalai Panbangred, Isabelle Martin‐Verstraete, Tjakko Abee, Didier Lereclus
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0003941
Ixodes ricinus Tick Lipocalins: Identification, Cloning, Phylogenetic Analysis and Biochemical CharacterizationCited by: 41
Author(s): Jérôme Beaufays, Benoît Adam, Yves Decrem, Pierre-Paul Prévôt, Sébastien Santini, Robert Brasseur, Michel Brossard, Laurence Lins, Luc Vanhamme, Edmond Godfroid
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0042871
Functional Characterizations of Chemosensory Proteins of the Alfalfa Plant Bug Adelphocoris lineolatus Indicate Their Involvement in Host RecognitionCited by: 109
Author(s): Siyi Gu, Song Ying Wang, Xue Ying Zhang, Ping Ji, Jing Tao Liu, Gui Rong Wang, Kai Wu, Yu Guo, Jing Zhou, Yong Jun Zhang
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0075076
Insight into the Intermolecular Recognition Mechanism between Keap1 and IKKβ Combining Homology Modelling, Protein-Protein Docking, Molecular Dynamics Simulations and Virtual Alanine MutationCited by: 42
Author(s): Zhengyu Jiang, Hongxi Chu, Meiyang Xi, Tingting Yang, Jianmin Jia, Jingjie Huang, Xiaoke Guo, Xiaojin Zhang, Qidong You, Haopeng Sun
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0003987
Ir-LBP, an Ixodes ricinus Tick Salivary LTB4-Binding Lipocalin, Interferes with Host Neutrophil FunctionCited by: 68
Author(s): Jérôme Beaufays, Benoît Adam, Catherine Menten-Dedoyart, Laurence Fiévez, A Grosjean, Yves Decrem, Pierre-Paul Prévôt, Sébastien Santini, Robert Brasseur, Michel Brossard, Michel Vanhaeverbeek, Fabrice Bureau, Ernst Heinen, Laurence Lins, Luc Vanhamme, Edmond Godfroid
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0133571
In Silico Generation of Peptides by Replica Exchange Monte Carlo: Docking-Based Optimization of Maltose-Binding-Protein LigandsCited by: 27
Author(s): Anna Russo, Pasqualina Liana Scognamiglio, Rolando P. Hong Enriquez, Carlo Santambrogio, Rita Grandori, Daniela Marasco, Antonio Giordano, G. Scoles, Sara Fortuna
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0034563
Determinants of Bacteriophage 933W Repressor DNA Binding SpecificityCited by: 5
Author(s): Tammy J. Bullwinkle, Daniel Samorodnitsky, Rita Rosati, Gerald B. Koudelka
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0043798
Filamins but Not Janus Kinases Are Substrates of the ASB2α Cullin-Ring E3 Ubiquitin Ligase in Hematopoietic CellsCited by: 10
Author(s): Isabelle Lamsoul, Marie Erard, Peter F.M. van der Ven, Pierre G. Lutz
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0106339
Docking Studies of Pakistani HCV NS3 Helicase: A Possible Antiviral Drug TargetCited by: 23
Author(s): Kaneez Fatima, Shilu Mathew, Mohd Suhail, Ashraf Ali, Ghazi A. Damanhouri, Esam I. Azhar, Ishtiaq Qadri
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0065011
Rice Mitogen Activated Protein Kinase Kinase and Mitogen Activated Protein Kinase Interaction Network Revealed by In-Silico Docking and Yeast Two-Hybrid ApproachesCited by: 43
Author(s): Dhammaprakash Pandhari Wankhede, Mohit Misra, Pallavi Singh, Alok Sinha
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0224442
Differences in protein structural regions that impact functional specificity in GT2 family β-glucan synthasesCited by: 15
Author(s): Daniel P. Oehme, Thomas Shafee, Matthew T. Downton, Antony Bacic, Monika S. Doblin
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0115859
Screening the Medicines for Malaria Venture "Malaria Box" against the Plasmodium falciparum Aminopeptidases, M1, M17 and M18Cited by: 32
Author(s): Alessandro Paiardini, Rebecca S. Bamert, Komagal Kannan-Sivaraman, N. Drinkwater, Shailesh N. Mistry, Peter J. Scammells, Sheena McGowan
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0208404
Time series modeling of pertussis incidence in China from 2004 to 2018 with a novel wavelet based SARIMA-NAR hybrid modelCited by: 28
Author(s): Yongbin Wang, Chunjie Xu, Zhende Wang, Shengkui Zhang, Ying Zhu, Juxiang Yuan
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.cell.2016.05.023
The Extracellular Surface of the GLP-1 Receptor Is a Molecular Trigger for Biased AgonismCited by: 125
Author(s): Denise Wootten, Christopher A. Reynolds, Kevin J. Smith, Juan Carlos Mobarec, Cassandra Koole, Emilia Elizabeth Savage, Kavita Pabreja, John Simms, Rohan Sridhar, Sebastian G.B. Furness, Mengjie Liu, Phillip E. Thompson, Laurence J. Miller, Arthur Christopoulos, Patrick M. Sexton
Software Mentions: 1
Published: over 8 years ago
10.1016/j.cell.2018.12.009
Human Semaphorin 3 Variants Link Melanocortin Circuit Development and Energy BalanceCited by: 71
Author(s): Agatha A. van der Klaauw, Sophie Croizier, Edson Mendes de Oliveira, Lukas Kurt Josef Stadler, Soyoung Park, Y. Kong, Matthew C. Banton, Panna Tandon, Audrey E. Hendricks, Julia M. Keogh, Susanna E. Riley, Sofia Papadia, Elana Henning, Rebecca Bounds, Elena G. Bochukova, Vanisha Mistry, Stephen O’Rahilly, Richard B. Simerly, James E.N. Minchin, Inês Barroso, E Y Jones, Sébastien G. Bouret, I. Sadaf Farooqi
Software Mentions: 1
Published: almost 6 years ago
10.1038/cddis.2016.11
Structural simulation of adenosine phosphate via plumbagin and zoledronic acid competitively targets JNK/Erk to synergistically attenuate osteoclastogenesis in a breast cancer modelCited by: 37
Author(s): Han Qiao, T Y Wang, Zhifeng Yu, Xiaozhe Han, X Q Liu, Y G Wang, Qiming Fan, An Qin, Tingting Tang
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.celrep.2019.04.082
The Chimpanzee SIV Envelope Trimer: Structure and Deployment as an HIV Vaccine TemplateCited by: 34
Author(s): Raiees Andrabi, Jesper Pallesen, Joel D. Allen, Ge Song, Jin Song Zhang, Natalia de Val, Gavin Gegg, Katelyn Porter, Ching-Yao Su, Matthias Pauthner, Amanda Newman, Hilary Bouton-Verville, Fernando Garcés, Ian A. Wilson, Max Crispin, Beatrice H. Hahn, Barton F. Haynes, Laurent Verkoczy, Andrew B. Ward, Dennis R. Burton
Software Mentions: 1
Published: over 5 years ago
10.1038/cr.2015.9
Cationic nanocarriers induce cell necrosis through impairment of Na+/K+-ATPase and cause subsequent inflammatory responseCited by: 194
Author(s): Xiawei Wei, Bin Shao, Zhiyao He, Tinghong Ye, Min Luo, Yaxiong Sang, Xiao Liang, Wei Wang, Shuang Luo, Shiyu Yang, Shuang Zhang, Changyang Gong, Maling Gou, Heng Deng, Yinglan Zhao, Huiling Yang, Senyi Deng, Chengjian Zhao, Yang Li, Zhiyong Qian, Jiong Li, Xun Sun, Jiahuai Han, Chengyu Jiang, Min Wu, Zhirong Zhang
Software Mentions: 1
Published: almost 10 years ago
10.3390/cells8121557
Non-Redundant and Overlapping Oncogenic Readouts of Non-Canonical and Novel Colorectal Cancer KRAS and NRAS MutantsCited by: 7
Author(s): Krizelle Mae M. Alcantara, Joshua Reginald P. Malapit, Ryan Timothy D. Yu, Jose Antonio Ma. G. Garrido, John Paul T. Rigor, Arlou Kristina Angeles, Eva Maria Cutiongco‐de la Paz, Reynaldo L. Garcia
Software Mentions: 1
Published: almost 5 years ago
10.1038/s42003-021-02638-5
Computational modeling and experimental validation of the EPI-X4/CXCR4 complex allows rational design of small peptide antagonistsCited by: 14
Author(s): Pandian Sokkar, Mirja Harms, Christina M. Stürzel, Andrea Gilg, Gönül Kızılsavaş, Martina Raasholm, Nico Preising, Manfred Wagner, Frank Kirchhoff, Ludger Ständker, Gilbert Weidinger, Benjamin Mayer, Jan Münch, Elsa Sánchez-García
Software Mentions: 1
Published: about 3 years ago
10.1038/s42003-020-01249-w
A novel WD40-repeat protein involved in formation of epidermal bladder cells in the halophyte quinoaCited by: 15
Author(s): Toru Imamura, Yukihiko Yasui, Hironori Koga, Hiroki Takagi, Akira Abe, Kanako Nishizawa, Nobuyuki Mizuno, Shinya Ohki, Hiroharu Mizukoshi, Masashi Mori
Software Mentions: 1
Published: about 4 years ago
10.1038/s42003-020-01450-x
Ligand-induced conformational rearrangements regulate the switch between membrane-proximal and distal functions of Rho kinase 2Cited by: 3
Author(s): István Hajdú, András Szilágyi, Barbara M. Végh, András Wacha, Dániel Györffy, Éva Gráczer, Márk Somogyi, Péter Gál, Péter Závodszky
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.csbj.2020.06.008
A systematic strategy for the investigation of vaccines and drugs targeting bacteriaCited by: 12
Author(s): Fangfang Yan, Feng Gao
Software Mentions: 1
Published: almost 5 years ago
10.7759/cureus.9349
Global Epidemiology of Ischemic Heart Disease: Results from the Global Burden of Disease StudyCited by: 319
Author(s): Moien Ab Khan, Muhammad Hashim, Huda Mustafa, May Yousif Baniyas, Shaikha Khalid Buti Mohamad Al Suwaidi, Rana AlKatheeri, Fatmah Mohamed Khalfan Alblooshi, Meera Eisa Ali Hassan Almatrooshi, Mariam Alzaabi, Reem Saif Al Darmaki, Shamsa Nasser Ali Hussain Lootah
Software Mentions: 1
Published: over 4 years ago
10.1038/s41431-020-00749-x
Pontocerebellar hypoplasia due to bi-allelic variants in MINPP1Cited by: 11
Author(s): Bart Appelhof, Matias Wagner, Julia Hoefele, Anja Heinze, Timo Roser, Margarete Koch-Hogrebe, Stefan D. Roosendaal, Mohammadreza Dehghani, Mohammad Yahya Vahidi Mehrjardi, Erin Torti, Henry Houlden, Reza Maroofian, Farrah Rajabi, Heinrich Sticht, Frank Baas, Dagmar Wieczorek, Rami Abou Jamra
Software Mentions: 1
Published: about 4 years ago
10.1111/ejss.12868
Molecular modelling of sorption processes of a range of diverse small organic molecules in Leonardite humic acidCited by: 11
Author(s): Dražen Petrov, Daniel Tunega, Martin H. Gerzabek, Chris Oostenbrink
Software Mentions: 1
Published: over 5 years ago
10.1002/2211-5463.12813
Structural insights into the mechanism of a novel protein targeting pathway in Gram‐negative bacteriaCited by: 3
Author(s): Jin Feng
Software Mentions: 1
Published: over 4 years ago
10.1002/2211-5463.12922
The transmembrane supercomplex mediating the biogenesis of OMPs in Gram‐negative bacteria assumes a circular conformational change upon activationCited by: 2
Author(s): Jin Feng
Software Mentions: 1
Published: over 4 years ago
10.3389/fcvm.2021.645172
In silico Exploration of Interactions Between Potential COVID-19 Antiviral Treatments and the Pore of the hERG Potassium Channel—A Drug AntitargetCited by: 4
Author(s): Ehab Al‐Moubarak, Mohsen Sharifi, Jules C. Hancox
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2017.00537
The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional RegulatorsCited by: 18
Author(s): Carsten Jers, Vaishnavi Ravikumar, Mateusz Łężyk, Abida Sultan, Åsa Sjöling, Sun Nyunt Wai, Ivan Mijaković
Software Mentions: 1
Published: almost 7 years ago
10.3389/fchem.2017.00041
Allosteric Control of Substrate Specificity of the Escherichia coli ADP-Glucose PyrophosphorylaseCited by: 11
Author(s): Ana Cristina Ebrecht, Ligin Solamen, Benjamin L. Hill, Alberto A. Iglesias, Kenneth W. Olsen, Miguel A. Ballícora
Software Mentions: 1
Published: over 7 years ago
10.3389/fchem.2020.602162
Host DDX Helicases as Possible SARS-CoV-2 Proviral Factors: A Structural Overview of Their Hijacking Through Multiple Viral ProteinsCited by: 23
Author(s): Flavia Squeglia, Maria Romanò, Alessia Ruggiero, Giovanni Maga, Rita Berisio
Software Mentions: 1
Published: almost 4 years ago
10.3389/fchem.2014.00061
Membrane transporters for the special amino acid glutamine: structure/function relationships and relevance to human healthCited by: 177
Author(s): Lorena Pochini, Mariafrancesca Scalise, Michele Galluccio, Cesare Indiveri
Software Mentions: 1
Published: over 10 years ago
10.3389/fchem.2020.622632
Elucidating Interactions Between SARS-CoV-2 Trimeric Spike Protein and ACE2 Using Homology Modeling and Molecular Dynamics SimulationsCited by: 28
Author(s): Sugunadevi Sakkiah, Wenjing Guo, Bohu Pan, Zuowei Ji, Gökhan Yavaş, Marli S.P. Azevedo, Jessica J. Hawes, Tucker A. Patterson, Huasheng Hong
Software Mentions: 1
Published: almost 4 years ago
10.3389/fendo.2015.00137
In a Class of Their Own – RXFP1 and RXFP2 are Unique Members of the LGR FamilyCited by: 12
Author(s): Emma J. Petrie, Samantha Lagaida, Ashish Sethi, Ross A. D. Bathgate, Paul R. Gooley
Software Mentions: 1
Published: about 9 years ago
10.3389/fendo.2018.00043
Molecular Modeling of Structures and Interaction of Human Corticotropin-Releasing Factor (CRF) Binding Protein and CRF Type-2 ReceptorCited by: 5
Author(s): Paula G. Slater, Sebastian E. Gutiérrez-Maldonado, Katia Gysling, Carlos F. Lagos
Software Mentions: 1
Published: almost 7 years ago
10.3389/fgene.2021.688241
Investigation of a Novel LRP6 Variant Causing Autosomal-Dominant Tooth AgenesisCited by: 9
Author(s): Yanxia Huang, Chunyan Gao, Chunyan Zheng, Chuanliang Xu, Yousheng Yan, Yu Sun, Xingyue Dong, Kai Yang, Dongliang Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2019.01021
Unusual Cysteine Content in V1 Region of gp120 From an Elite Suppressor That Produces Broadly Neutralizing AntibodiesCited by: 8
Author(s): Jennie M Hutchinson, Kathryn A. Mesa, David Alexánder, Bin Yu, Sara M. O’Rourke, Kay Limoli, Terri Wrin, Steven G. Deeks, Phillip W. Berman
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2019.01225
Inhibition of Escherichia coli and Bacillus subtilis FtsZ Polymerization and Bacillus subtilis Growth by Dihydroxynaphtyl Aryl KetonesCited by: 9
Author(s): Gabriela Araya, Julio Benites, Juan Sebastián Reyes, Andrés E. Marcoleta, Jaime A. Valderrama, Rosalba Lagos, Octavio Monasterio
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2016.00165
Cell Wall Anchoring of the Campylobacter Antigens to Lactococcus lactisCited by: 23
Author(s): Patrycja Kobierecka, Barbara Olech, Monika Książek, Katarzyna Derlatka, Iwona Adamska, Paweł Majewski, Elżbieta Katarzyna Jagusztyn-Krynicka, Agnieszka Wyszyńska
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2021.692279
Identification of a Human Anti-Alpha-Toxin Monoclonal Antibody Against Staphylococcus aureus InfectionCited by: 3
Author(s): Fangjie Liu, Zhangchun Guan, Yu Liu, Jingjing Li, Chenghua Liu, Yaping Gao, Yun Ma, Jie Feng, Beifen Shen, Guangxiao Yang
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.624121
Mycobacterium tuberculosis and M. bovis BCG Moreau Fumarate Reductase Operons Produce Different Polypeptides That May Be Related to Non-canonical FunctionsCited by: 3
Author(s): Marcos Gustavo Araujo Schwarz, Deborah Antunes, Paloma Rezende Corrêa, Antônio José da Silva-Gonçalves, Wladimir Malaga, Ernesto R. Caffarena, Christophe Guilhot, Leila Mendonça‐Lima
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2013.00412
Strategies and molecular tools to fight antimicrobial resistance: resistome, transcriptome, and antimicrobial peptidesCited by: 56
Author(s): Letícia Stephan Tavares, Carolina dos Santos Fernandes da Silva, Vinícius Carius de Souza, Vânia Lúcia da Silva, Cláudio Galuppo Diniz, Marcelo de Oliveira Santos
Software Mentions: 1
Published: almost 12 years ago
10.3389/fmicb.2016.00707
High Level Secretion of Laccase (LccH) from a Newly Isolated White-Rot Basidiomycete, Hexagonia hirta MSF2Cited by: 27
Author(s): Sujatha Kandasamy, Iniya Kumar Muniraj, Namitha Purushothaman, Ashika Sekar, D. Jeya Sundara Sharmila, Ramasamy Kumarasamy, Sivakumar Uthandi
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2018.02410
Catalytic Performance of a Class III Old Yellow Enzyme and Its Cysteine VariantsCited by: 8
Author(s): Anika Scholtissek, Eric Gädke, Caroline E. Paul, Adrie H. Westphal, W.J.H. van Berkel, Dirk Tischler
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2019.01357
Testing a Human Antimicrobial RNase Chimera Against Bacterial ResistanceCited by: 11
Author(s): Guillem Prats-Ejarque, Jiarui Li, Fatima Ait-Ichou, Helena Lorente, Ester Boix
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2015.00821
Paracoccidioides spp. ferrous and ferric iron assimilation pathwaysCited by: 24
Author(s): Elisa Flávia Luiz Cardoso Bailão, Patrícia de Sousa Lima, Mirelle Garcia Silva-Bailão, Alexandre Melo Bailão, Gabriel da Rocha Fernandes, Daniel J. Kosman, Célia Maria de Almeida Soares
Software Mentions: 1
Published: over 9 years ago
10.3389/fmicb.2019.01642
Identification and Unusual Properties of the Master Regulator FNR in the Extreme Acidophile Acidithiobacillus ferrooxidansCited by: 11
Author(s): Héctor S. Osório, Erin L. Mettert, Patricia J. Kiley, Mark Dopson, Eugenia Jedlicki, David S. Holmes
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2018.03050
Pyridine Nucleotide Coenzyme Specificity of p-Hydroxybenzoate Hydroxylase and Related Flavoprotein MonooxygenasesCited by: 14
Author(s): Adrie H. Westphal, Dirk Tischler, Florian Heinke, Sarah Hofmann, Janosch A. D. Gröning, Dirk Labudde, W.J.H. van Berkel
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmolb.2017.00005
Structural Basis of the Substrate Specificity and Enzyme Catalysis of a Papaver somniferum Tyrosine DecarboxylaseCited by: 2
Author(s): Huai Guan, Shuaibao Song, Howard Robinson, Jing Liang, Huanjun Ding, Jianyong Li, Qian Han
Software Mentions: 1
Published: almost 8 years ago
10.3389/fnmol.2015.00055
Functional characterization of ivermectin binding sites in α1β2γ2L GABA(A) receptorsCited by: 46
Author(s): Argel Estrada-Mondragón, Joseph W. Lynch
Software Mentions: 1
Published: about 9 years ago
10.3389/fneur.2020.00025
Localized Axolemma Deformations Suggest Mechanoporation as Axonal Injury TriggerCited by: 15
Author(s): Annaclaudia Montanino, Marzieh Saeedimasine, Alessandra Villa, Svein Kleiven
Software Mentions: 1
Published: almost 5 years ago
10.3389/fnins.2020.611953
Structure-Guided Computational Methods Predict Multiple Distinct Binding Modes for Pyrazoloquinolinones in GABAA ReceptorsCited by: 4
Author(s): Jure Fabjan, Filip Koniuszewski, Benjamin Schaar, Margot Ernst
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphar.2019.00584
Rubidium Chloride Targets Jnk/p38-Mediated NF-κB Activation to Attenuate Osteoclastogenesis and Facilitate OsteoblastogenesisCited by: 14
Author(s): Zhengxiao Ouyang, Qianli Huang, Bin Liu, Hong Wu, Tang Liu, Yong Liu
Software Mentions: 1
Published: over 5 years ago
10.3389/fphar.2017.00996
Hypouricemic Effects of Ganoderma applanatum in Hyperuricemia Mice through OAT1 and GLUT9Cited by: 22
Author(s): Tianqiao Yong, Shaodan Chen, Yizhen Xie, Diling Chen, Juanjuan Su, Ou Shuai, Chunwei Jiao, Dan Zuo
Software Mentions: 1
Published: almost 7 years ago
10.3389/fphar.2019.00577
Periplasmic Expression of 4/7 α-Conotoxin TxIA Analogs in E. coli Favors Ribbon Isomer Formation – Suggestion of a Binding Mode at the α7 nAChRCited by: 8
Author(s): Yamina El Hamdaoui, Xiaosa Wu, Richard J. Clark, Julien Giribaldi, Raveendra Anangi, David J. Craik, Glenn F. King, Sébastien Dutertre, Quentin Kaas, Volker Herzig, Annette Nicke
Software Mentions: 1
Published: over 5 years ago
10.3389/fphar.2015.00183
Repeat-swap homology modeling of secondary active transporters: updated protocol and prediction of elevator-type mechanismsCited by: 46
Author(s): Ariela Vergara-Jaque, Cristina Fenollar–Ferrer, Desireé Kaufmann, Lucy R. Forrest
Software Mentions: 1
Published: about 9 years ago
10.3389/fphys.2014.00525
Novel phenotype associated with a mutation in the KCNA1(Kv1.1) geneCited by: 29
Author(s): Maria Cristina D’Adamo, Constanze Gallenmüller, Ilenio Servettini, Elisabeth Härtl, Stephen J. Tucker, Larissa Arning, Saskia Biskup, Alessandro Grottesi, Luca Guglielmi, Paola Imbrici, Pia Bernasconi, Giuseppe Di Giovanni, Fabio Franciolini, Luigi Catacuzzeno, Mauro Pessia, Thomas Klopstock
Software Mentions: 1
Published: almost 10 years ago
10.3389/fphys.2021.643281
An Overview of Antennal Esterases in LepidopteraCited by: 13
Author(s): Ricardo Chirino Godoy, Juan Machuca, Herbert Venthur, Andrés Quiróz, Ana Mutis
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2018.01948
Reduced Activity of Nitrate Reductase Under Heavy Metal Cadmium Stress in Rice: An in silico AnswerCited by: 30
Author(s): Prerna Singh, Indra Singh, Kavita Shah
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2015.00091
Polyol specificity of recombinant Arabidopsis thaliana sorbitol dehydrogenase studied by enzyme kinetics and in silico modelingCited by: 6
Author(s): M Aguayo, Juan Carlos Gutiérrez Cáceres, Matías Fuentealba, Rodrigo A.A. Muñoz, Claudia Stange, Ricardo Cabrera, Michael Handford
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2020.00571
Functional Characterization of the Arabidopsis Ammonium Transporter AtAMT1;3 With the Emphasis on Structural Determinants of Substrate Binding and Permeation PropertiesCited by: 4
Author(s): Dongli Hao, Shaoyu Yang, Shuxia Liu, Jinyan Zhou, Yanan Huang, Anne‐Aliénor Véry, Hervé Sentenac, Yanhua Su
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2020.00662
Structure, Function, Regulation and Phylogenetic Relationship of ZIP Family Transporters of PlantsCited by: 94
Author(s): Thumadath Palayullaparambil Ajeesh Krishna, Theivanayagam Maharajan, G. Victor Roch, S. Ignacimuthu, Stanislaus Antony Ceasar
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2021.638392
Citrullination of Proteins as a Specific Response Mechanism in PlantsCited by: 2
Author(s): Claudius Marondedze, Giuliano Elia, Ludivine Thomas, Aloysius Wong, Chris Gehring
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2021.672035
Phylogenetic and Structural Analysis of NIN-Like Proteins With a Type I/II PB1 Domain That Regulates Oligomerization for Nitrate ResponseCited by: 6
Author(s): Kuan-Ting Hsin, Tzu-Jing Yang, Yu-Hsuan Lee, Yi-Sheng Cheng
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2014.00405
Effects of light and the regulatory B-subunit composition of protein phosphatase 2A on the susceptibility of Arabidopsis thaliana to aphid (Myzus persicae) infestationCited by: 25
Author(s): Brwa Rasool, Barbara Karpińska, Grzegorz Konert, Guido Durian, Konstantin Denessiouk, Saijaliisa Kangasjärvi, Christine H. Foyer
Software Mentions: 1
Published: over 10 years ago
10.3389/fpls.2021.714730
Deciphering the Behavioral Response of Meloidogyne incognita and Fusarium oxysporum Toward Mustard Essential OilCited by: 6
Author(s): Anirban Dutta, A.B. Mandal, Aditi Kundu, Monika Malik, Anand Kumar Chaudhary, Matiyar Rahaman Khan, V. Shanmugam, Uma Rao, Supradip Saha, Neeraj Patanjali, Rajesh Kumar, Anil Kumar, Sukanta Dash, Pradeep Kumar Singh, Anupama Singh
Software Mentions: 1
Published: about 3 years ago
10.3389/fpsyg.2018.01144
Automating the Production of Communicative Gestures in Embodied CharactersCited by: 14
Author(s): Brian Ravenet, Catherine Pélachaud, Chloé Clavel, Stacy Marsella
Software Mentions: 1
Published: over 6 years ago
10.3389/fpubh.2021.695139
A Machine-Generated View of the Role of Blood Glucose Levels in the Severity of COVID-19Cited by: 31
Author(s): Emmanuelle Logette, Charlotte Lorin, Cyrille Favreau, Eugenia Oshurko, Jay S. Coggan, Francesco Casalegno, Mohameth François Sy, Caitlin Monney, Marine Bertschy, Émilie Delattre, Pierre-Alexandre Fonta, Jan Krepl, Stanislav Schmidt, Daniel Keller, Samuel Kerrien, E. Scantamburlo, Anna-Kristin Kaufmann, Henry Markram
Software Mentions: 1
Published: over 3 years ago
10.3389/fvets.2020.568249
Polymorphisms in TLR4 Gene Associated With Somatic Cell Score in Water Buffaloes (Bubalus bubalis)Cited by: 7
Author(s): Valentina Roldan-Montes, Diércles Francisco Cardoso, Naudín Hurtado-Lugo, André Vieira do Nascimento, Daniel Jordan de Abreu Santos, Daiane Cristina Becker Scalez, Amílcar Chagas Freitas, Ana Cristina Herrera, Lúcia Galvão de Albuquerque, Gregório Miguel Ferreira de Camargo, Humberto Tonhati
Software Mentions: 1
Published: about 4 years ago
10.1534/g3.116.028639
The Evolution of the <i>FT/TFL1</i> Genes in Amaranthaceae and Their Expression Patterns in the Course of Vegetative Growth and Flowering in <i>Chenopodium rubrum</i>Cited by: 11
Author(s): Jana Drabešová, Lucie Černá, Helena Mašterová, Pavla Koloušková, Martin Potocký, Helena Štorchová
Software Mentions: 1
Published: about 8 years ago
10.3390/healthcare8040491
Risk Factors for Dementia Incidence Based on Previous Results of the Specific Health Checkups in JapanCited by: 3
Author(s): Yoh Tamaki, Yoshimune Hiratsuka, Toshiro Kumakawa
Software Mentions: 1
Published: about 4 years ago
10.1038/s41438-021-00461-x
Site-directed mutagenesis identified the key active site residues of alcohol acyltransferase PpAAT1 responsible for aroma biosynthesis in peach fruitsCited by: 12
Author(s): Zhizhong Song, Bin Peng, Zi-Xia Gu, Meiling Tang, Bei Li, Mao Liang, Limin Wang, Xiaotong Guo, Jianping Wang, Yu-Fen Sha, Hongxia Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1128/IAI.01291-15
Analysis of TcdB Proteins within the Hypervirulent Clade 2 Reveals an Impact of RhoA Glucosylation on Clostridium difficile Proinflammatory ActivitiesCited by: 24
Author(s): Carlos Quesada-Gómez, Diana López-Ureña, Nicole M. Chumbler, Heather K. Kroh, Carolina Castro-Peña, César Rodríguez, Josué Orozco-Aguilar, Sara González-Camacho, Alexandra Rucavado, Caterina Guzmán-Verri, Trevor D. Lawley, D. Borden Lacy, Esteban Chaves-Olarte
Software Mentions: 1
Published: over 8 years ago
10.1002/acm2.12292
Evaluation of the intra- and interfractional tumor motion and variability by fiducial-based real-time tracking in liver stereotactic body radiation therapyCited by: 25
Author(s): Zhiwen Liang, Hongyuan Liu, Jun Xue, Bin Hu, Bin Zhu, Qin Li, Sheng Zhang, Gang Wu
Software Mentions: 1
Published: over 6 years ago