cran: Modeler | Projects | Ecosyste.ms: Papers

10.1038/s41419-018-0689-4

The cyclohexene derivative MC-3129 exhibits antileukemic activity via RhoA/ROCK1/PTEN/PI3K/Akt pathway-mediated mitochondrial translocation of cofilin
Cited by: 8
Author(s): Yi Zheng, Qin Ouyang, Ruoqiu Fu, Lei Liu, Hongwei Zhang, Xiaoye Hu, Yanxia Liu, Ying‐Chun Chen, Ning Gao
Software Mentions: 2
Published: over 6 years ago

10.1038/s41419-020-2344-0

Deguelin suppresses non-small cell lung cancer by inhibiting EGFR signaling and promoting GSK3β/FBW7-mediated Mcl-1 destabilization
Cited by: 34
Author(s): Feng Gao, Xinfang Yu, Ming Li, Liqun Zhou, Wenbin Liu, Wei Li, Haidan Liu
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41421-021-00278-x

Discovery of a cooperative mode of inhibiting RIPK1 kinase
Cited by: 11
Author(s): Huyan Meng, Guowei Wu, Xinsuo Zhao, Anhui Wang, Dekang Li, Yilun Tong, Teng Jin, Ye Cao, Bing Shan, Shichen Hu, Ying Liu, Lifeng Pan, Xiaoxu Tian, Ping Wu, Chao Peng, Junying Yuan, Guohui Li, Tan Li, Zhaoyin Wang, Ying Li
Software Mentions: 2
Published: over 3 years ago

10.6026/97320630013122

Linear epitope prediction in HPV type 16 E7 antigen and their docked interaction with human TMEM 50A structural model
Cited by: 2
Author(s): Upasna Srivastava, Satendra Singh, Budhayash Gautam, Pramod Kumar Yadav, Madhu Yadav, George Thomas, Gurmit Singh
Software Mentions: 2
Published: over 7 years ago

10.1093/molbev/msz060

Emergence of a Thrombospondin Superfamily at the Origin of Metazoans
Cited by: 5
Author(s): Deborah K. Shoemark, Berenice Ziegler, Hiroshi Watanabe, Jennifer Strompen, Richard P. Tucker, Suat Özbek, Josephine C. Adams
Software Mentions: 2
Published: over 5 years ago

10.1128/AEM.00449-17

Rational Engineering of a Cold-Adapted α-Amylase from the Antarctic Ciliate Euplotes focardii for Simultaneous Improvement of Thermostability and Catalytic Activity
Cited by: 31
Author(s): Guang Yang, Hua Yang, Matteo Mozzicafreddo, Patrizia Ballarini, Sandra Pucciarelli, Cristina Miceli
Software Mentions: 2
Published: over 7 years ago

10.1016/j.ajhg.2017.03.008

PLAA Mutations Cause a Lethal Infantile Epileptic Encephalopathy by Disrupting Ubiquitin-Mediated Endolysosomal Degradation of Synaptic Proteins
Cited by: 37
Author(s): Andrew G. Hall, Michael S. Nahorski, Lyndsay M. Murray, Ranad Shaheen, Emma M. Perkins, Kosala N. Dissanayake, Yosua Kristaryanto, Ross A. Jones, Julie Vogt, Manon Rivagorda, Mark T. Handley, Girish R. Mali, Tooba Quidwai, Dinesh C. Soares, Margaret Keighren, Lisa McKie, Richard L. Mort, Noor Gammoh, Amaya García-Muñoz, Tracey Davey, Matthieu Vermeren, Diana Chapman Walsh, Peter S. Budd, Irene Aligianis, Eissa Faqeih, Alan J. Quigley, Ian J. Jackson, Yogesh Kulathu, Mandy Jackson, Richard R. Ribchester, Alex von Kriegsheim, Fowzan S. Alkuraya, C. Geoffrey Woods, Eamonn R. Maher, Pleasantine Mill
Software Mentions: 2
Published: over 7 years ago

10.1074/mcp.M116.058016

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions
Cited by: 85
Author(s): Kshitij Khatri, Joshua Klein, Mitchell R. White, Oliver C. Grant, Nancy Leymarie, Robert J. Woods, Kevan L. Hartshorn, Joseph Zaia
Software Mentions: 2
Published: over 8 years ago

10.1186/s12866-021-02244-9

Structural insights into acyl-ACP selective recognition by the Aeromonas hydrophila AHL synthase AhyI
Cited by: 0
Author(s): Lan Jin, Jingjiao Bao, Yu Chen, Wenge Yang, Wenyi Du
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/8196147

Homology Modeling and Virtual Screening Studies of Antigen MLAA-42 Protein: Identification of Novel Drug Candidates against Leukemia—An <i>In Silico</i> Approach
Cited by: 31
Author(s): Ihsan A. Shehadi, Huda R. M. Rashdan, Aboubakr H. Abdelmonsef
Software Mentions: 2
Published: over 4 years ago

10.1016/j.csbj.2021.05.002

Evidence of a putative glycosaminoglycan binding site on the glycosylated SARS-CoV-2 spike protein N-terminal domain
Cited by: 33
Author(s): Zachariah P Schuurs, Edward Hammond, Stefano Elli, Timothy R. Rudd, Courtney J. Mycroft-West, Marcelo A. Lima, Mark A. Skidmore, Richard Karlsson, Yen-Hsi Chen, Ieva Bagdonaite, Zifeng Yang, Yassir A. Ahmed, Derek J. Richard, Jeremy E. Turnbull, Vito Ferro, Deirdre R. Coombe, Neha S. Gandhi
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41435-020-00120-6

Evolutionary and structural analysis of SARS-CoV-2 specific evasion of host immunity
Cited by: 35
Author(s): Irfan Hussain, Nashaiman Pervaiz, Abbas Khan, Shoaib Saleem, Huma Shireen, Dong‐Qing Wei, Viviane Labrie, Yīmíng Bào, Amir Ali Abbasi
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0008311

Bi-Directional SIFT Predicts a Subset of Activating Mutations
Cited by: 34
Author(s): William Lee, Yan Zhang, Kiran Mukhyala, Robert A. Lazarus, Zemin Zhang
Software Mentions: 2
Published: almost 15 years ago

10.3390/biom9100633

Disclosing the Impact of Carcinogenic SF3b Mutations on Pre-mRNA Recognition Via All-Atom Simulations
Cited by: 20
Author(s): Jure Borišek, Andrea Saltalamacchia, Anna Gallì, Giulia Palermo, Elisabetta Molteni, Luca Malcovati, Alessandra Magistrato
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-021-00467-5

Functional conservation of the grapevine candidate gene INNER NO OUTER for ovule development and seed formation
Cited by: 12
Author(s): Valentina di Rienzo, Zahra Imanifard, Isabella Mascio, Charles S. Gasser, Debra J. Skinner, Ciro Leonardo Pierri, Martina Marini, Valentina Fanelli, Wilma Sabetta, Cinzia Montemurro, Diana Bellin
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.immuni.2018.10.015

Inference of the HIV-1 VRC01 Antibody Lineage Unmutated Common Ancestor Reveals Alternative Pathways to Overcome a Key Glycan Barrier
Cited by: 59
Author(s): Mattia Bonsignori, Eric Scott, Kevin Wiehe, David Easterhoff, S. Munir Alam, Kwan‐Ki Hwang, Melissa Cooper, Shi-Mao Xia, Ruijun Zhang, David C. Montefiori, Rory Henderson, Xin Nie, Garnett Kelsoe, M. Anthony Moody, Xuejun Chen, Michael Joyce, Peter D. Kwong, Mark Connors, John R. Mascola, Andrew T. McGuire, Leonidas Stamatatos, Max Medina-Ramírez, Rogier W. Sanders, Kevin O. Saunders, Thomas B. Kepler, Barton F. Haynes
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.dib.2017.10.045

Data for the homology modelling of the red pigment-concentrating hormone receptor (Dappu-RPCHR) of the crustacean Daphnia pulex , and docking of its cognate agonist (Dappu-RPCH)
Cited by: 2
Author(s): Graham E. Jackson, Elumalai Pavadai, Gerd GÄde, Zaheer Timol, Niels H. Andersen
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0005031

Autocatalytic Activation of the Furin Zymogen Requires Removal of the Emerging Enzyme's N-Terminus from the Active Site
Cited by: 27
Author(s): Katarzyna Gawlik, Sergey A. Shiryaev, Wenhong Zhu, Khatereh Motamedchaboki, Roxane Desjardins, Robert Day, Albert G. Remacle, Boguslaw Stec, Alex Y. Strongin
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0142606

Biochemical Analysis of CagE: A VirB4 Homologue of Helicobacter pylori Cag-T4SS
Cited by: 27
Author(s): Mohd Shariq, Navin Kumar, Rajesh Kumari, Amarjeet Kumar, Naidu Subbarao, Gauranga Mukhopadhyay
Software Mentions: 2
Published: about 9 years ago

10.3390/molecules24112075

In Silico Identification of Potential Inhibitor Against a Fungal Histone Deacetylase, RPD3 from Magnaporthe Oryzae
Cited by: 4
Author(s): Gnanendra Shanmugam, Taehyeon Kim, Junhyun Jeon
Software Mentions: 2
Published: over 5 years ago

10.3390/biom10020231

A Thermolabile Phospholipase B from Talaromyces marneffei GD-0079: Biochemical Characterization and Structure Dynamics Study
Cited by: 16
Author(s): Rabia Durrani, Faez Iqbal Khan, Shahid Ali, Yonghua Wang, Bo Yang
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.M114.557900

Engagement of Nucleotide-binding Oligomerization Domain-containing Protein 1 (NOD1) by Receptor-interacting Protein 2 (RIP2) Is Insufficient for Signal Transduction
Cited by: 24
Author(s): Sophie Mayle, Joseph P. Boyle, Eiki Sekine, Birte Zurek, Thomas A. Kufer, Tom P. Monie
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M114.561787

Structural Insights into the Activation of the RhoA GTPase by the Lymphoid Blast Crisis (Lbc) Oncoprotein
Cited by: 9
Author(s): Marc Lenoir, Masaaki Sugawara, Jaswant Kaur, Linda Ball, Michael Overduin
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M114.630681

Analysis of Human Dopamine D3 Receptor Quaternary Structure
Cited by: 23
Author(s): Sara Marsango, Gianluigi Caltabiano, Chantévy Pou, María José Varela Liste, Graeme Milligan
Software Mentions: 2
Published: over 9 years ago

10.3389/fbioe.2020.00532

On the Conformational Dynamics of β-Amyloid Forming Peptides: A Computational Perspective
Cited by: 17
Author(s): Konda Mani Saravanan, Haiping Zhang, Huiling Zhang, Wenhui Xi, Yanjie Wei
Software Mentions: 2
Published: over 4 years ago

10.1074/jbc.M115.684142

Unique Role of the WD-40 Repeat Protein 5 (WDR5) Subunit within the Mixed Lineage Leukemia 3 (MLL3) Histone Methyltransferase Complex
Cited by: 21
Author(s): Stephen A. Shinsky, Michael S. Cosgrove
Software Mentions: 2
Published: about 9 years ago

10.1074/jbc.M115.685222

The Evolutionarily Conserved Tre2/Bub2/Cdc16 (TBC), Lysin Motif (LysM), Domain Catalytic (TLDc) Domain Is Neuroprotective against Oxidative Stress
Cited by: 44
Author(s): Mattéa J. Finelli, Luis Sánchez‐Pulido, Kevin X. Liu, Kay E. Davies, Peter L. Oliver
Software Mentions: 2
Published: almost 9 years ago

10.3389/fbioe.2020.00642

A Broad Temperature Active Lipase Purified From a Psychrotrophic Bacterium of Sikkim Himalaya With Potential Application in Detergent Formulation
Cited by: 32
Author(s): Anil Kumar, Srijana Mukhia, Neeraj Kumar, Vishal Acharya, Sanjay Kumar, Rakshak Kumar
Software Mentions: 2
Published: over 4 years ago

10.3390/antiox10060950

Implications of Oxidative Stress in Glioblastoma Multiforme Following Treatment with Purine Derivatives
Cited by: 11
Author(s): Marta Orlicka-Płocka, Agnieszka Fedoruk-Wyszomirska, Dorota Gurda, Paweł Pawelczak, Patrycja Krawczyk, Małgorzata Giel-Pietraszuk, Grzegorz Framski, Tomasz Ostrowski, Eliza Wyszko
Software Mentions: 2
Published: over 3 years ago

10.1074/jbc.M116.729806

Composition and Activity of the Non-canonical Gram-positive SecY2 Complex
Cited by: 8
Author(s): Mikaila Bandara, Robin A. Corey, Remy Martin, J. Mark Skehel, Ariel Blocker, Howard F. Jenkinson, Ian Collinson
Software Mentions: 2
Published: about 8 years ago

10.1074/jbc.M116.758300

Detection of lipid-induced structural changes of the Marburg virus matrix protein VP40 using hydrogen/deuterium exchange-mass spectrometry
Cited by: 28
Author(s): Kaveesha J. Wijesinghe, Sarah Urata, Nisha Bhattarai, Edgar E. Kooijman, Bernard S. Gerstman, Prem P. Chapagain, Sheng Li, Robert V. Stahelin
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.M117.779496

Genetically encoded photocross-linkers determine the biological binding site of exendin-4 peptide in the N-terminal domain of the intact human glucagon-like peptide-1 receptor (GLP-1R)
Cited by: 43
Author(s): Cassandra Koole, Christopher A. Reynolds, Juan Carlos Mobarec, Caroline A. Hick, Patrick M. Sexton, Thomas P. Sakmar
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA118.003737

Mapping the binding site of the P2X receptor antagonist PPADS reveals the importance of orthosteric site charge and the cysteine-rich head region
Cited by: 15
Author(s): Hong Huo, Alistair G. Fryatt, Louise K. Farmer, Ralf Schmid, Richard J. Evans
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA118.004185

The conserved threonine-rich region of the HCF-1PRO repeat activates promiscuous OGT:UDP-GlcNAc glycosylation and proteolysis activities
Cited by: 6
Author(s): Vaibhav Kapuria, Ute F. Röhrig, Patrice Waridel, Fabienne Lammers, Vladimir S. Borodkin, Daan M. F. van Aalten, Vincent Zoete, Winship Herr
Software Mentions: 1
Published: about 6 years ago

10.1074/jbc.RA118.005972

Two clusters of residues contribute to the activity and substrate specificity of Fm1, a bifunctional oleate and linoleate desaturase of fungal origin
Cited by: 10
Author(s): Yuanheng Cai, Xiaohong Yu, Qun Li, Changjun Liu, John Shanklin
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA119.012063

Substrate recognition and ATPase activity of the E. coli cysteine/cystine ABC transporter YecSC-FliY
Cited by: 11
Author(s): Siwar Sabrialabed, Ji-Young Yang, Elon Yariv, Nir Ben‐Tal, Oded Lewinson
Software Mentions: 1
Published: over 4 years ago

10.1002/jbmr.3875

A Rare Mutation in <i>SMAD9</i> Associated With High Bone Mass Identifies the SMAD‐Dependent BMP Signaling Pathway as a Potential Anabolic Target for Osteoporosis
Cited by: 28
Author(s): Celia L Gregson, Dylan J. M. Bergen, Paul Leo, Richard B. Sessions, Lawrie Wheeler, April Hartley, Scott E. Youlten, Peter I. Croucher, Aideen McInerney-Leo, William D. Fraser, Jonathan Tang, Lisa K. Anderson, Mhairi Marshall, Leon Sergot, Lavinia Paternoster, George Davey Smith, Matthew A. Brown, Chrissy L. Hammond, John P. Kemp, Jonathan H Tobias, Emma L. Duncan
Software Mentions: 1
Published: about 5 years ago

10.1021/acs.jcim.0c01315

Transmembrane Protein Docking with JabberDock
Cited by: 5
Author(s): Lucas S. P. Rudden, Matteo T. Degiacomi
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1006986

Structural and immunologic correlates of chemically stabilized HIV-1 envelope glycoproteins
Cited by: 30
Author(s): Torben Schiffner, Jesper Pallesen, Rebecca A. Russell, Jonathan Dodd, Natalia de Val, Celia C. LaBranche, David C. Montefiori, Georgia D. Tomaras, Xiaoying Shen, Scarlett L. Harris, Amin E. Moghaddam, Oleksandr Kalyuzhniy, Rogier W. Sanders, Laura E. McCoy, Michael D. Moore, Andrew B. Ward, Quentin J. Sattentau
Software Mentions: 1
Published: over 6 years ago

10.1073/pnas.2108006118

Probing solution structure of the pentameric ligand-gated ion channel GLIC by small-angle neutron scattering
Cited by: 5
Author(s): Marie Lycksell, Urška Rovšnik, Cathrine Bergh, Nicolai Tidemand Johansen, Anne Martel, Lionel Porcar, Lise Arleth, Rebecca J. Howard, Erik Lindahl
Software Mentions: 1
Published: about 3 years ago

10.1186/s12284-017-0151-8

Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.)
Cited by: 29
Author(s): D. Shoba, M. Raveendran, S. Manonmani, S. Utharasu, D. Dhivyapriya, G. Subhasini, S. Ramchandar, V. Ramanathan, Nitasha Grover, S. Gopala Krishnan, Ashok Kumar Singh, Pawan Kumar Jayaswal, P. B. Kale, M. K. Ramkumar, S. V. Amitha Mithra, Trilochan Mohapatra, Kuldeep Singh, Nagendra Singh, Sarla Neelamraju, M. S. Sheshshayee, Meera Kumari Kar, S. Robin, Rameshwar Sharma
Software Mentions: 1
Published: over 7 years ago

10.1038/srep19245

Flavone synthases from Lonicera japonica and L. macranthoides reveal differential flavone accumulation
Cited by: 32
Author(s): Jie Wu, Xiaochen Wang, Liuyan Yang, Hui Du, Qingyan Shu, Shang Su, Lijin Wang, Li S, Liang-Sheng Wang
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep22349

From crystal structure of α-conotoxin GIC in complex with Ac-AChBP to molecular determinants of its high selectivity for α3β2 nAChR
Cited by: 38
Author(s): Bo Lin, Manyu Xu, Xiaopeng Zhu, Yong Wu, Xi Liu, Dongting Zhangsun, Yuanyan Hu, Shi Hua Xiang, Igor E. Kasheverov, Victor I. Tsetlin, Xinquan Wang
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25687

A Stochastic Point Cloud Sampling Method for Multi-Template Protein Comparative Modeling
Cited by: 8
Author(s): Jilong Li, Jianlin Cheng
Software Mentions: 1
Published: over 8 years ago

10.1038/srep36767

Herb-target interaction network analysis helps to disclose molecular mechanism of traditional Chinese medicine
Cited by: 25
Author(s): Linlin Hao, Hao Ruan, Qi Ouyang, Luhua Lai
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-06848-y

A single amino acid substitution confers B-cell clonogenic activity to the HIV-1 matrix protein p17
Cited by: 14
Author(s): Cinzia Giagulli, Pasqualina D’Ursi, Wangxiao He, Simone Zorzan, Francesca Caccuri, Kristen M. Varney, Alessandro Orro, Stefania Marsico, Benoît Otjacques, Carlo Laudanna, Luciano Milanesi, Riccardo Dolcetti, Simona Fiorentini, Wuyuan Lu, Arnaldo Caruso
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-11128-w

Target margin design for real-time lung tumor tracking stereotactic body radiation therapy using CyberKnife Xsight Lung Tracking System
Cited by: 33
Author(s): Zhiyong Yang, Yu Hui Chang, Hong-Yuan Liu, Gang Liu, Qin Li
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-27974-1

2-[2-(4-(trifluoromethyl)phenylamino)thiazol-4-yl]acetic acid (Activator-3) is a potent activator of AMPK
Cited by: 10
Author(s): Navneet Bung, Sobhitha Surepalli, Sriram Seshadri, Sweta Patel, Saranya Peddasomayajula, K. Lalith Kumar, Sireesh T. Kumar, Phanithi Prakash Babu, Kishore V. L. Parsa, Rajamohan R. Poondra, Gopalakrishnan Bulusu, Parimal Misra
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-34374-y

Long-ranged Protein-glycan Interactions Stabilize von Willebrand Factor A2 Domain from Mechanical Unfolding
Cited by: 7
Author(s): Chuan Dong, Jumin Lee, Seonghoon Kim, Whitney Lai, Edmund B. Webb, Alparslan Öztekin, Xiao Hui Zhang, Wonpil Im
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-45206-y

Structural, functional, and stability change predictions in human telomerase upon specific point mutations
Cited by: 22
Author(s): Umesh Kalathiya, Monikaben Padariya, Maciej Bagiński
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-49354-z

Immunoinformatics approaches to explore Helicobacter Pylori proteome (Virulence Factors) to design B and T cell multi-epitope subunit vaccine
Cited by: 92
Author(s): Mazhar Khan, Sidra Khan, Asim Ali, Hameed Akbar, Abrar Mohammad Sayaf, Abbas Khan, Dong‐Qing Wei
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-77157-0

Patulin suppresses α1-adrenergic receptor expression in HEK293 cells
Cited by: 6
Author(s): Yashodani Pillay, Savania Nagiah, Alisa Phulukdaree, Krishnan Anand, Anil A. Chuturgoon
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-93382-7

Functional characteristics of a novel odorant binding protein in the legume pod borer, Maruca vitrata
Cited by: 4
Author(s): Hui Ai, Yuying Liu, Guangyan Long, Yuan Yuan, Shaopei Huang, Yan Chen
Software Mentions: 1
Published: over 3 years ago

10.1016/j.str.2009.03.014

Structure and Interdomain Interactions of a Hybrid Domain: A Disulphide-Rich Module of the Fibrillin/LTBP Superfamily of Matrix Proteins
Cited by: 46
Author(s): Sacha A. Jensen, Saba Iqbal, E.D. Lowe, Christina Redfield, Penny A. Handford
Software Mentions: 1
Published: over 15 years ago

10.1016/j.str.2009.03.018

KTN (RCK) Domains Regulate K+ Channels and Transporters by Controlling the Dimer-Hinge Conformation
Cited by: 47
Author(s): Tarmo P. Roosild, Samantha Castronovo, Samantha Miller, Chan Li, Tim Rasmussen, Wendy Bartlett, Banuri Gunasekera, Senyon Choe, Ian R. Booth
Software Mentions: 1
Published: over 15 years ago

10.3390/toxins9070214

Screening and Validation of Highly-Efficient Insecticidal Conotoxins from a Transcriptome-Based Dataset of Chinese Tubular Cone Snail
Cited by: 16
Author(s): Bingmiao Gao, Chao Peng, Bo Lin, Qin Chen, Junqing Zhang, Qiong Shi
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins9100300

Structure–Function Relationships Underlying the Capacity of Bordetella Adenylate Cyclase Toxin to Disarm Host Phagocytes
Cited by: 39
Author(s): Jakub Novák, Ondřej Černý, Adriana Osičková, Irena Linhartová, Jiří Mašín, Ladislav Bumba, Peter Šebo, Radim Osička
Software Mentions: 1
Published: about 7 years ago

10.3390/toxins12120802

N-Terminal Tagging with GFP Enhances Selectivity of Agitoxin 2 to Kv1.3-Channel Binding Site
Cited by: 10
Author(s): Oksana V. Nekrasova, Alexandra Primak, Anastasia A. Ignatova, Valery Novoseletsky, Olga Geraskina, Kseniya S. Kudryashova, S. A. Yakimov, Mikhaǐl P. Kirpichnikov, Alexander S. Arseniev, Аlexey V. Feofanov
Software Mentions: 1
Published: almost 4 years ago

10.1128/mSphere.00346-17

Middle East Respiratory Syndrome Coronavirus Nonstructural Protein 16 Is Necessary for Interferon Resistance and Viral Pathogenesis
Cited by: 91
Author(s): Vineet D. Menachery, Lisa E. Gralinski, Hugh D. Mitchell, Kenneth H. Dinnon, Sarah R. Leist, Boyd Yount, Rachel L. Graham, Eileen T. McAnarney, Kelly G. Stratton, Adam S. Cockrell, Kari Debbink, Amy C. Sims, Katrina M. Waters, Ralph S. Baric
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphereDirect.00585-17

RNase III Domain of KREPB9 and KREPB10 Association with Editosomes in Trypanosoma brucei
Cited by: 8
Author(s): Jason Carnes, Suzanne M. McDermott, Kenneth Stuart
Software Mentions: 1
Published: over 6 years ago

10.1186/1478-4491-11-27

Physician and nurse supply in Serbia using time-series data
Cited by: 12
Author(s): Milena Šantrić Milićević, Vladimir Vasić, Jelena Marinković
Software Mentions: 1
Published: over 11 years ago

10.15171/ijb.1356

In Silico Perspectives on the Prediction of the PLP’s Epitopes involved in Multiple Sclerosis
Cited by: 3
Author(s): Zahra Zamanzadeh, Mitra Ataei, Seyed Massood Nabavi, Ghasem Ahangari, Mehdi Sadeghi, Mohammad Hosein Sanati
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph18041916

Can Working Conditions and Employees’ Mental Health Be Improved via Job Stress Interventions Designed and Implemented by Line Managers and Human Resources on an Operational Level?
Cited by: 12
Author(s): Magnus Åkerström, Linda Corin, Jonathan Severin, Ingibjörg H. Jonsdottir, Lisa Björk
Software Mentions: 1
Published: almost 4 years ago

10.1155/2019/9804584

Reverse Immunology Approach to Define a New HIV-gp41-Neutralizing Epitope
Cited by: 3
Author(s): Karim Dorgham, Nicolas Pietrancosta, Amel Affoune, Olivier Lucar, Tahar Bouceba, Solenne Chardonnet, Cédric Pionneau, Christophe Piesse, Delphine Sterlin, Pablo Guardado-Calvo, Philippe Karoyan, Patrice Debré, Guy Gorochov, Vincent Vieillard
Software Mentions: 1
Published: over 5 years ago

10.1038/oncsis.2017.78

Structural investigation of nucleophosmin interaction with the tumor suppressor Fbw7γ
Cited by: 15
Author(s): Adele Di Matteo, Mimma Franceschini, Alessandro Paiardini, Alessandro Grottesi, Sara Chiarella, Serena Rocchio, Concetta Di Natale, Daniela Marasco, Luigi Vitagliano, Carlo Travaglini-Allocatelli, L. Federici
Software Mentions: 1
Published: about 7 years ago

10.1093/jmcb/mjaa067

SARS-CoV-2 spike protein binds to bacterial lipopolysaccharide and boosts proinflammatory activity
Cited by: 106
Author(s): Ganna Petruk, Manoj Puthia, Jitka Petrlová, Firdaus Samsudin, Ann‐Charlotte Strömdahl, Samuel Cerps, Lena Uller, Sven Kjellström, Peter J. Bond, Artur Schmidtchen
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.47198

Defective AMH signaling disrupts GnRH neuron development and function and contributes to hypogonadotropic hypogonadism
Cited by: 45
Author(s): Samuel A. Malone, Georgios E Papadakis, Andréa Messina, Nour El Houda Mimouni, Sara Trova, Mónica Imbernón, Cécile Allet, Irène Cimino, James S. Acierno, Daniele Cassatella, Chao Xu, Richard Quinton, Gabor Szinnai, Pascal Pigny, Lur Alonso‐Cotchico, Laura Masgrau, Jean‐Didier Maréchal, Vincent Prévot, Nelly Pitteloud, Paolo Giacobini
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.63356

Properdin oligomers adopt rigid extended conformations supporting function
Cited by: 9
Author(s): Dennis Pedersen, Martin Nors Pedersen, Sofia Mm Mazarakis, Yong Wang, Kresten Lindorff‐Larsen, Lise Arleth, Gregers Rom Andersen
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms13079343

Molecular Characterization and Comparative Sequence Analysis of Defense-Related Gene, Oryza rufipogon Receptor-Like Protein Kinase 1
Cited by: 5
Author(s): Yee-Song Law, Ranganath Gudimella, Beng Kah Song, R Wickneswari V Ratnam, Jennifer Ann Harikrishna
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms21041243

Identification and Molecular Characterization of a Pellino Protein in Kuruma Prawn (Marsupenaeus Japonicus) in Response to White Spot Syndrome Virus and Vibrio Parahaemolyticus Infection
Cited by: 7
Author(s): Heqian Zhang, Wen-Tao Cheng, Jinbin Zheng, Panpan Wang, Qinghui Liu, Zhen Li, Tian-Yi Shi, Yijian Zhou, Yong Mao, Xinyi Yu
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21114058

Homology Modeling of the Human P-glycoprotein (ABCB1) and Insights into Ligand Binding through Molecular Docking Studies
Cited by: 31
Author(s): Liadys Mora Lagares, Nikola Minovski, Ana Yisel Caballero Alfonso, Emilio Benfenati, Sara Wellens, Maxime Culot, Fabien Gosselet, Marjana Novič
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22105106

Partial Agonist Activity of Neonicotinoids on Rat Nicotinic Receptors: Consequences over Epinephrine Secretion and In Vivo Blood Pressure
Cited by: 3
Author(s): Joohee Park, Antoine Taly, Jennifer Bourreau, Frédéric de Nardi, Claire Legendre, Didier Henrion, Nathalie C. Guérineau, Christian Legros, César Mattei, Hélène Tricoire‐Leignel
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms221910523

Tomato Bushy Stunt Virus Nanoparticles as a Platform for Drug Delivery to Shh-Dependent Medulloblastoma
Cited by: 6
Author(s): Chiara Lico, Barbara Tanno, Luca Marchetti, Flavia Novelli, Paola Giardullo, Caterina Arcangeli, Simonetta Pazzaglia, Maurizio Podda, L. Santi, Roberta Bernini, Selene Baschieri, Mariateresa Mancuso
Software Mentions: 1
Published: about 3 years ago

10.1016/j.isci.2019.05.014

Plant Cytosolic Ascorbate Peroxidase with Dual Catalytic Activity Modulates Abiotic Stress Tolerances
Cited by: 28
Author(s): Dan-Chu Chin, Rajendran Senthil Kumar, Ching‐Shu Suen, Chia‐Yu Chien, Ming‐Jing Hwang, Chun‐Hua Hsu, Xu XuHan, Zhong Xiong Lai, Kai‐Wun Yeh
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.26848

Characterization of cancer-associated IDH2 mutations that differ in tumorigenicity, chemosensitivity and 2-hydroxyglutarate production
Cited by: 12
Author(s): Kevin P. Kotredes, Roshanak Razmpour, Evan M. Lutton, Mercedes Alfonso‐Prieto, Servio H. Ramirez, Ana M. Gamero
Software Mentions: 1
Published: over 5 years ago

10.1186/s13018-015-0334-1

Construction and validation of a three-dimensional finite element model of degenerative scoliosis
Cited by: 26
Author(s): Jie Zheng, Yonghong Yang, Shu-liang Lou, Dongsheng Zhang, Shenghui Liao
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.01202-16

Herpes Simplex Virus 1 UL37 Protein Tyrosine Residues Conserved among All Alphaherpesviruses Are Required for Interactions with Glycoprotein K, Cytoplasmic Virion Envelopment, and Infectious Virus Production
Cited by: 11
Author(s): Dmitry Chouljenko, Nithya Jambunathan, Vladimir N. Chouljenko, Misagh Naderi, Michał Bryliński, John Caskey, Konstantin G. Kousoulas
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2017.00509

Novel Alleles of Phosphorus-Starvation Tolerance 1 Gene (PSTOL1) from Oryza rufipogon Confers High Phosphorus Uptake Efficiency
Cited by: 25
Author(s): Kumari Neelam, Shiwali Thakur, . Neha, Inderjit Singh Yadav, Kishor Kumar, Salwinder Singh Dhaliwal, Kuldeep Singh
Software Mentions: 1
Published: over 7 years ago

10.1128/AAC.00661-16

The Heterodimeric ABC Transporter EfrCD Mediates Multidrug Efflux in Enterococcus faecalis
Cited by: 41
Author(s): Lea M. Hürlimann, Valentina Corradi, Michael Höhl, Guido V. Bloemberg, D. Peter Tieleman, Markus A. Seeger
Software Mentions: 1
Published: about 8 years ago

10.1128/AEM.01628-18

Versatile Fungal Polyphenol Oxidase with Chlorophenol Bioremediation Potential: Characterization and Protein Engineering
Cited by: 13
Author(s): Efstratios Nikolaivits, Maria Dimarogona, Ioanna Karagiannaki, Angelina Chalima, Ayelet Fishman, Evangelos Topakas
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-10-195

Ab initio and homology based prediction of protein domains by recursive neural networks
Cited by: 17
Author(s): Ian Walsh, Alberto J. M. Martin, Catherine Mooney, Enrico Rubagotti, Alessandro Vullo, Gianluca Pollastri
Software Mentions: 1
Published: over 15 years ago

10.1186/s12915-016-0252-7

The human Na+/H+ exchanger 1 is a membrane scaffold protein for extracellular signal-regulated kinase 2
Cited by: 43
Author(s): Ruth Hendus-Altenburger, Elena Pedraz-Cuesta, Christina W. Olesen, Elena Papaleo, Jeff A. Schnell, Jonathan T. S. Hopper, Carol V. Robinson, Stine Falsig Pedersen, Birthe B. Kragelund
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-13-S7-S20

Blocking Protein kinase C signaling pathway: mechanistic insights into the anti-leishmanial activity of prospective herbal drugs from Withania somnifera
Cited by: 20
Author(s): Abhinav Grover, Shashank P. Katiyar, Jeyaraman Jeyakanthan, Vikash Kumar Dubey, Durai Sundar
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-9-308

RAWUL: A new ubiquitin-like domain in PRC1 Ring finger proteins that unveils putative plant and worm PRC1 orthologs
Cited by: 117
Author(s): Luis Sánchez‐Pulido, Damien P. Devos, Z. Renee Sung, Myriam Calonje
Software Mentions: 1
Published: over 16 years ago

10.1186/s12879-020-05268-0

Immune escape mutations in HIV-1 controllers in the Brazilian Amazon region
Cited by: 6
Author(s): Samara Tatielle Monteiro Gomes, Ednelza da Silva Graça Amoras, Érica Ribeiro Gomes, Maria Alice Freitas Queiroz, Edivaldo Costa Sousa Júnior, Janaína Mota de Vasconcelos Massafra, Poliana da Silva Lemos, João Lídio Vianez Júnior, Ricardo Ishak, Antônio Carlos Rosário Vallinoto
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2199-9-88

Computational modeling and in silico analysis of differential regulation of myo-inositol catabolic enzymes in Cryptococcus neoformans
Cited by: 11
Author(s): Emalee Ann MacKenzie, Lisa S. Klig
Software Mentions: 1
Published: almost 17 years ago

10.1186/1756-0500-5-526

Role of Serine140 in the mode of action of Mycobacterium tuberculosis β-ketoacyl-ACP Reductase (MabA)
Cited by: 10
Author(s): Leonardo Astolfi Rosado, Rafael Andrade Caceres, Walter Filgueira de Azevedo, Luiz Augusto Basso, Daniel Silas Veras dos Santos
Software Mentions: 1
Published: about 12 years ago

10.1186/1756-0500-3-197

Distant homologs of anti-apoptotic factor HAX1 encode parvalbumin-like calcium binding proteins
Cited by: 4
Author(s): Katarzyna Kokoszyńska, Leszek Rychlewski, Lucjan Wyrwicz
Software Mentions: 1
Published: over 14 years ago

10.3390/biology6020027

Is Polysialylated NCAM Not Only a Regulator during Brain Development But also during the Formation of Other Organs?
Cited by: 27
Author(s): Christina E. Galuska, Thomas Lütteke, Sebastian P. Galuska
Software Mentions: 1
Published: over 7 years ago

10.1155/2015/256916

Molecular Analysis of AFP and HSA Interactions with PTEN Protein
Cited by: 9
Author(s): Mingyue Zhu, Bo Lin, Peng Zhou, Mengsen Li
Software Mentions: 1
Published: almost 10 years ago

10.3390/biom11020261

Demystifying Chronic Kidney Disease of Unknown Etiology (CKDu): Computational Interaction Analysis of Pesticides and Metabolites with Vital Renal Enzymes
Cited by: 5
Author(s): Harindu Rajapaksha, Dinesh R. Pandithavidana, Jayangika Niroshani Dahanayake
Software Mentions: 1
Published: almost 4 years ago

10.3390/biom5020306

Tackling Critical Catalytic Residues in Helicobacter pylori L-Asparaginase
Cited by: 6
Author(s): Maristella Maggi, Laurent R. Chiarelli, Giovanna Valentini, Claudia Scotti
Software Mentions: 1
Published: over 9 years ago

10.1186/1475-2875-9-166

Model variations in predicting incidence of Plasmodium falciparum malaria using 1998-2007 morbidity and meteorological data from south Ethiopia
Cited by: 46
Author(s): Eskindir Loha, Bernt Lindtjørn
Software Mentions: 1
Published: over 14 years ago

10.3390/md16120507

Alanine-Scanning Mutagenesis of α-Conotoxin GI Reveals the Residues Crucial for Activity at the Muscle Acetylcholine Receptor
Cited by: 18
Author(s): Jiong Ning, Rui Li, Jie Ren, Dongting Zhangsun, Xiaopeng Zhu, Yong Wu, Sulan Luo
Software Mentions: 1
Published: almost 6 years ago

10.3390/ma13235563

Simulation and Optimization of FEV Limit Discharge’s Heat Dissipation Based on Orthogonal Experiments
Cited by: 3
Author(s): Hong Li, Y. Xu, Yong Suk Yang, Chenlong Si
Software Mentions: 1
Published: almost 4 years ago

10.3390/ma14185189

Independent Lung Ventilation-Experimental Studies on a 3D Printed Respiratory Tract Model
Cited by: 3
Author(s): Katarzyna Kramek-Romanowska, Anna Stecka, Krzysztof Zieliński, Agata Dorosz, Piotr Okrzeja, Marcin Michnikowski, Marcin Odziomek
Software Mentions: 1
Published: about 3 years ago

10.1007/s00044-014-1171-1

Synthesis and molecular docking of novel non-competitive antagonists of GluK2 receptor
Cited by: 2
Author(s): Agnieszka A. Kaczor, Tomasz M. Wróbel, Christiane Kronbach, K. Unverferth, Tomasz Stachal, Dariusz Matosiuk
Software Mentions: 1
Published: over 10 years ago

10.1007/s00044-018-2137-5

Comparative molecular field analysis and molecular dynamics studies of the dopamine D2 receptor antagonists without a protonatable nitrogen atom
Cited by: 7
Author(s): Agnieszka A. Kaczor, Justyna Żuk, Dariusz Matosiuk
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12934-015-0228-2

Fungal cytochrome P450 monooxygenases of Fusarium oxysporum for the synthesis of ω-hydroxy fatty acids in engineered Saccharomyces cerevisiae
Cited by: 53
Author(s): Pradeepraj Durairaj, Sailesh Malla, Sivakumar Nadarajan, Pyung‐Gang Lee, E. Jung, Hyun Ho Park, Byung‐Gee Kim
Software Mentions: 1
Published: over 9 years ago

10.1016/j.molcel.2011.05.030

The Initiation Factor TFE and the Elongation Factor Spt4/5 Compete for the RNAP Clamp during Transcription Initiation and Elongation
Cited by: 132
Author(s): Dina Grohmann, Julia Nagy, Anirban Chakraborty, Daniel Klose, Daniel Fielden, Richard H. Ebright, Jens Michaelis, Finn Werner
Software Mentions: 1
Published: over 13 years ago

Projects: cran: Modeler

Papers Mentioning Modeler 310