Projects: cran: MetaLonDA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/MetaLonDA
Metagenomics Longitudinal Differential Abundance Method
7 versions
Latest release: over 6 years ago
171 downloads last month
Enhanced Analysis
Educational Contributors:
ametwa2@uic.edu
ahmedmetwally@10-134-215-113.vlan904.client.wireless.uic.edu
aametwally@stanford.edu
Repository Activity:
Repository Owner:
Ahmed A. Metwally (user)
I create ML methods and algorithms to understand how diseases progress over time
I create ML methods and algorithms to understand how diseases progress over time
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+60
Educational commit emails
3 contributors with educational email addresses -
+6
Science terms in README
3 scientific terms found in README
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning MetaLonDA 7
10.1186/s13073-021-00869-z
Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing homeCited by: 13
Author(s): Quinten R Ducarmon, Elisabeth M. Terveer, Sam Nooij, Michelle N Bloem, Karuna E W Vendrik, Monique A. A. Caljouw, Ingrid M J G Sanders, S.M. van Dorp, M.C. Wong, Romy D. Zwittink, Ed J. Kuijper
Software Mentions: 12
Published: about 5 years ago
10.1080/19490976.2020.1840764
Dynamics of the bacterial gut microbiota during controlled human infection with <i>Necator americanus</i> larvaeCited by: 6
Author(s): Quinten R Ducarmon, Marie-Astrid Hoogerwerf, Jacqueline J. Janse, A. R. Geelen, J. Koopman, Romy D. Zwittink, Jelle J. Goeman, Ed J. Kuijper, Meta Roestenberg
Software Mentions: 7
Published: over 5 years ago
10.1172/jci.insight.144255
Disruption of innate defense responses by endoglycosidase HPSE promotes cell survivalCited by: 14
Author(s): Alex Agelidis, Benjamin A. Turturice, Rahul K. Suryawanshi, Tejabhiram Yadavalli, Dinesh Jaishankar, Joshua Ames, James Hopkins, Lulia Koujah, Chandrashekhar D. Patil, Satvik Hadigal, Evan J. Kyzar, Anaamika Campeau, Jacob M. Wozniak, David J. Gonzalez, Israël Vlodavsky, Jinping Li, David L. Perkins, Patricia W. Finn, Deepak Shukla
Software Mentions: 4
Published: about 5 years ago
10.3389/fcimb.2021.712381
Moderate-Intensity Physical Exercise Affects the Exercise Performance and Gut Microbiota of MiceCited by: 15
Author(s): Wenqian Yang, Yuqian Liu, Guang Yang, Binglin Meng, Zhicheng Yi, Yang Guan, Mingjian Chen, Pengfei Hou, Haitao Wang, Xiaohui Xu
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12864-021-07948-w
Microbial trend analysis for common dynamic trend, group comparison, and classification in longitudinal microbiome studyCited by: 1
Author(s): Chan Wang, Jiyuan Hu, Martin J. Blaser, Huilin Li
Software Mentions: 3
Published: almost 5 years ago
10.1186/s40168-018-0402-y
MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studiesCited by: 43
Author(s): Ahmed A. Metwally, Jie Yang, Christian Ascoli, Yang Dai, Patricia W. Finn, David L. Perkins
Software Mentions: 2
Published: over 8 years ago
10.1186/s12882-020-02177-x
The effects of 16-weeks of prebiotic supplementation and aerobic exercise training on inflammatory markers, oxidative stress, uremic toxins, and the microbiota in pre-dialysis kidney patients: a randomized controlled trial-protocol paperCited by: 5
Author(s): Samuel Headley, Donna J. Chapman, Michael J. Germain, Elizabeth Evans, Jasmin Hutchinson, Karen Madsen, T. Alp İkizler, Emily M. Miele, Kristyn Kirton, Elizabeth O’Neill, Allen E. Cornelius, Brian Martin, Bradley C. Nindl, Nosratola D. Vaziri
Software Mentions: 2
Published: over 5 years ago