Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: MetaLonDA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/MetaLonDA

Metagenomics Longitudinal Differential Abundance Method
7 versions
Latest release: over 4 years ago
171 downloads last month

Papers Mentioning MetaLonDA 7

10.1186/s13073-021-00869-z

Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home
Cited by: 13
Author(s): Quinten R Ducarmon, Elisabeth M. Terveer, Sam Nooij, Michelle N Bloem, Karuna E W Vendrik, Monique A. A. Caljouw, Ingrid M J G Sanders, S.M. van Dorp, M.C. Wong, Romy D. Zwittink, Ed J. Kuijper
Software Mentions: 12
Published: over 3 years ago

10.1080/19490976.2020.1840764

Dynamics of the bacterial gut microbiota during controlled human infection with <i>Necator americanus</i> larvae
Cited by: 6
Author(s): Quinten R Ducarmon, Marie-Astrid Hoogerwerf, Jacqueline J. Janse, A. R. Geelen, J. Koopman, Romy D. Zwittink, Jelle J. Goeman, Ed J. Kuijper, Meta Roestenberg
Software Mentions: 7
Published: almost 4 years ago

10.1172/jci.insight.144255

Disruption of innate defense responses by endoglycosidase HPSE promotes cell survival
Cited by: 14
Author(s): Alex Agelidis, Benjamin A. Turturice, Rahul K. Suryawanshi, Tejabhiram Yadavalli, Dinesh Jaishankar, Joshua Ames, James Hopkins, Lulia Koujah, Chandrashekhar D. Patil, Satvik Hadigal, Evan J. Kyzar, Anaamika Campeau, Jacob M. Wozniak, David J. Gonzalez, Israël Vlodavsky, Jinping Li, David L. Perkins, Patricia W. Finn, Deepak Shukla
Software Mentions: 4
Published: over 3 years ago

10.3389/fcimb.2021.712381

Moderate-Intensity Physical Exercise Affects the Exercise Performance and Gut Microbiota of Mice
Cited by: 15
Author(s): Wenqian Yang, Yuqian Liu, Guang Yang, Binglin Meng, Zhicheng Yi, Yang Guan, Mingjian Chen, Pengfei Hou, Haitao Wang, Xiaohui Xu
Software Mentions: 3
Published: almost 3 years ago

10.1186/s12864-021-07948-w

Microbial trend analysis for common dynamic trend, group comparison, and classification in longitudinal microbiome study
Cited by: 1
Author(s): Chan Wang, Jiyuan Hu, Martin J. Blaser, Huilin Li
Software Mentions: 3
Published: about 3 years ago

10.1186/s40168-018-0402-y

MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies
Cited by: 43
Author(s): Ahmed A. Metwally, Jie Yang, Christian Ascoli, Yang Dai, Patricia W. Finn, David L. Perkins
Software Mentions: 2
Published: over 6 years ago

10.1186/s12882-020-02177-x

The effects of 16-weeks of prebiotic supplementation and aerobic exercise training on inflammatory markers, oxidative stress, uremic toxins, and the microbiota in pre-dialysis kidney patients: a randomized controlled trial-protocol paper
Cited by: 5
Author(s): Samuel Headley, Donna J. Chapman, Michael J. Germain, Elizabeth Evans, Jasmin Hutchinson, Karen Madsen, T. Alp İkizler, Emily M. Miele, Kristyn Kirton, Elizabeth O’Neill, Allen E. Cornelius, Brian Martin, Bradley C. Nindl, Nosratola D. Vaziri
Software Mentions: 2
Published: almost 4 years ago