Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Mercator
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Mercator
Clustering and Visualizing Distance Matrices
10 versions
Latest release: over 2 years ago
1 dependent package
249 downloads last month
Papers Mentioning Mercator 347
10.1128/JCM.00386-18
Development and Evaluation of a Novel Loop-Mediated Isothermal Amplification Assay for Diagnosis of Cutaneous and Visceral LeishmaniasisCited by: 62
Author(s): Emily R. Adams, Gerard J. Schoone, Inge Versteeg, María Adelaida Gómez, Ermias Diro, Yasuyoshi Mori, Desirée Perlee, Tim Downing, Nancy Gore Saravia, Ashenafi Assaye, Asrat Hailu, Audrey Albertini, Joseph Mathu Ndung’u, Henk D. F. H. Schallig
Software Mentions: 1
Published: over 6 years ago
10.1093/jxb/eru492
Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm fillingCited by: 30
Author(s): Stefan Kohl, Julien Hollmann, Alexander Erban, Joachim Kopka, David Riewe, Winfriede Weschke, Hans Weber
Software Mentions: 1
Published: almost 10 years ago
10.1093/jxb/erv397
Hormone-mediated growth dynamics of the barley pericarp as revealed by magnetic resonance imaging and transcript profilingCited by: 20
Author(s): Rainer Pielot, Stefan Kohl, B. Manz, Twan Rutten, Diana Weier, Danuše Tarkowská, Jakub Rolčı́k, Miroslav Strnad, F. Volke, Hans Weber, Winfriede Weschke
Software Mentions: 1
Published: over 9 years ago
10.1093/jxb/erv482
Getting ready for host invasion: elevated expression and action of xyloglucan endotransglucosylases/hydrolases in developing haustoria of the holoparasitic angiosperm<i>Cuscuta</i>Cited by: 37
Author(s): Svein Ottar Olsen, Bernd Striberny, Julien Hollmann, Rainer Schwacke, Zoë A. Popper, Kirsten Krause
Software Mentions: 1
Published: about 9 years ago
10.1093/jxb/erx121
Pyrenoid loss impairs carbon-concentrating mechanism induction and alters primary metabolism in Chlamydomonas reinhardtiiCited by: 15
Author(s): Madeline Mitchell, Gergana Metodieva, Metodi V. Metodiev, Howard Griffiths, Moritz T. Meyer
Software Mentions: 1
Published: over 7 years ago
10.1093/jxb/eraa151
Slower development of lower canopy beans produces better coffeeCited by: 9
Author(s): Bing Cheng, Heather E. Smyth, Agnelo Furtado, Robert J. Henry
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.ppat.1002338
Genomic Transition to Pathogenicity in Chytrid FungiCited by: 98
Author(s): Suzanne Joneson, Jason E. Stajich, Shin-Han Shiu, Erica Bree Rosenblum
Software Mentions: 1
Published: about 13 years ago
10.3390/proteomes5010008
Proteomic Profiling of the Microsomal Root Fraction: Discrimination of Pisum sativum L. Cultivars and Identification of Putative Root Growth MarkersCited by: 6
Author(s): Claudia-Nicole Meisrimler, Stefanie Wienkoop, Sabine Lüthje
Software Mentions: 1
Published: over 7 years ago
10.1186/1742-4690-9-43
Default in plasma and intestinal IgA responses during acute infection by simian immunodeficiency virusCited by: 30
Author(s): Nada Chaoul, Chantal Burelout, Sandrine Péruchon, Beatrice Nguyen van Buu, Pascale Laurent, Alexis Proust, Martine Raphaël, Olivier Garraud, Roger Le Grand, Sophie Prévôt, Yolande Richard
Software Mentions: 1
Published: over 12 years ago
10.1126/sciadv.aav2516
Warm Circumpolar Deep Water transport toward Antarctica driven by local dense water export in canyonsCited by: 57
Author(s): Adele K. Morrison, Andrew McC. Hogg, Matthew H. England, Paul Spence
Software Mentions: 1
Published: over 4 years ago
10.1038/srep17457
Developmental exposure to Ethinylestradiol affects transgenerationally sexual behavior and neuroendocrine networks in male miceCited by: 14
Author(s): Lyes Derouiche, Matthieu Keller, Anne Duittoz, Delphine Pillon
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep18148
RNA-sequencing Reveals Global Transcriptomic Changes in Nicotiana tabacum Responding to Topping and Treatment of Axillary-shoot Control ChemicalsCited by: 25
Author(s): Sanjay K. Singh, Yongmei Wu, Jayadri Sekhar Ghosh, Sitakanta Pattanaik, Colin Fisher, Ying Wang, D. S. Lawson, Ling Yuan
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep20958
High-throughput 3D whole-brain quantitative histopathology in rodentsCited by: 37
Author(s): Michel Vandenberghe, Anne‐Sophie Hérard, Nicolas Souedet, Elmahdi Sadouni, Mathieu Santin, Dominique Briet, Denis Carré, Jocelyne Schulz, Philippe Hantraye, Pierre‐Etienne Chabrier, Thomas Rooney, Thomas Debeir, Véronique Blanchard, Laurent Pradier, Marc Dhénain, Thierry Delzescaux
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep23212
To Be a Flower or Fruiting Branch: Insights Revealed by mRNA and Small RNA Transcriptomes from Different Cotton Developmental StagesCited by: 19
Author(s): Quan Sun, Xiongming Du, Chaowei Cai, Lu Long, Sai Zhang, Panzhe Qiao, Weina Wang, Kexue Zhou, Guanghao Wang, Xin Liu, Hui Zhang, Shuaipeng Geng, Chunrong Yang, Wei Gao, Jianchuan Mo, Chen Miao, Chun‐Peng Song, Yingfan Cai
Software Mentions: 1
Published: over 8 years ago
10.1038/srep26758
AMP-activated protein kinase modulates tau phosphorylation and tau pathology in vivoCited by: 87
Author(s): Manon Domise, Sébastien Didier, Claudia Marinangeli, Haitian Zhao, Pallavi Chandakkar, Luc Buée, Benoı̂t Viollet, Peter Davies, Philippe Marambaud, Valérie Vingtdeux
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-05850-8
Comparative transcriptome analysis of the floral transition in Rosa chinensis ‘Old Blush’ and R. odorata var. giganteaCited by: 13
Author(s): Xijie Guo, Chao Yu, Le Luo, Huihua Wan, Yushu Li, Jia Wang, Tangren Cheng, Huitang Pan, Qixiang Zhang
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-08690-8
Transcriptome analysis of genes involved in secondary cell wall biosynthesis in developing internodes of Miscanthus lutarioripariusCited by: 25
Author(s): Ruibo Hu, Yu Xu, Changjiang Yu, Kang He, Qi Tang, Chunlin Jia, He Guo, Xiaoyu Wang, Yingzhen Kong, Gongke Zhou
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-14047-y
Transcriptional responses of wheat and the cereal cyst nematode Heterodera avenae during their early contact stageCited by: 16
Author(s): Changlong Chen, Lei Cui, Yongpan Chen, Hongjun Zhang, Pei Liu, Peipei Wu, Dan Qiu, Jingwei Zou, Dan Yang, Li Yang, Hongwei Liu, Yang Zhou, Hongjie Li
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-018-21333-w
RHYTHM: An Open Source Imaging Toolkit for Cardiac Panoramic Optical MappingCited by: 41
Author(s): Christopher Gloschat, Kedar Aras, Shubham Gupta, Ndeye Rokhaya Faye, Hanyu Zhang, Roman Syunyaev, Roman Pryamonosov, Jack M. Rogers, Matthew W. Kay, Igor R. Efimov
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-24381-4
Pineal-dependent increase of hypothalamic neurogenesis contributes to the timing of seasonal reproduction in sheepCited by: 24
Author(s): Martine Batailler, Didier Chesneau, Laura Derouet, Lucile Butruille, Stéphanie Segura, Juliette Cognié, Joëlle Dupont, Delphine Pillon, Martine Migaud
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-30033-4
Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber contentCited by: 61
Author(s): Lakshmi Kasirajan, Nam V. Hoang, Agnelo Furtado, Frederik C. Botha, Robert J. Henry
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-34748-2
First Precambrian palaeomagnetic data from the Mawson Craton (East Antarctica) and tectonic implicationsCited by: 9
Author(s): Yebo Liu, Zheng‐Xiang Li, Sergei A. Pisarevsky, Uwe Kirscher, Ross N. Mitchell, J. Camilla Stark, Chris Clark, Martin Hand
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-42164-3
Proteomic analysis reveals novel insights into tanshinones biosynthesis in Salvia miltiorrhiza hairy rootsCited by: 23
Author(s): Ángela Contreras, Baptiste Leroy, Pierre-Antoine Mariage, Ruddy Wattiez
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-43706-5
A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solaniCited by: 12
Author(s): Bart Verwaaijen, Daniel Wibberg, Anderson M. Winkler, Rita Zrenner, Hanna Bednarz, Karsten Niehaus, Rita Grosch, Alfred Pühler, Andreas Schlüter
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-54858-9
A New Tool for In Vivo Study of Astrocyte Connexin 43 in BrainCited by: 12
Author(s): Marine Droguerre, Tomokazu Tsurugizawa, Adeline Duchêne, Benjamin Portal, Bruno P. Guiard, Nicole Déglon, Nathalie Rouach, Michel Hamon, Franck Mouthon, Luisa Ciobanu, Mathieu Charvériat
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-59800-y
Oceanic vortex mergers are not isolated but influenced by the β-effect and surrounding eddiesCited by: 13
Author(s): Charly de Marez, Xavier Carton, Pierre L’Hégaret, Thomas Meunier, Alexandre Stegner, Briac Le Vu, Mathieu Morvan
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-71680-w
Emotionality modulates the impact of chronic stress on memory and neurogenesis in birdsCited by: 6
Author(s): Flore Lormant, Vitor Hugo Bessa Ferreira, Maryse Meurisse, Julie Lemarchand, P. Constantin, Mélody Morisse, Fabien Cornilleau, Céline Parias, Élodie Chaillou, Aline Bertin, Léa Lansade, Christine Leterrier, Frédéric Lévy, Ludovic Calandreau
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-77277-7
Hyperbolic mapping of human proximity networksCited by: 2
Author(s): Marco A. Rodríguez-Flores, Fragkiskos Papadopoulos
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-87333-5
Optimisation of the coalescent hyperbolic embedding of complex networksCited by: 6
Author(s): Béla Kovács, Gergely Palla
Software Mentions: 1
Published: over 3 years ago
10.3390/s121115206
A Large Scale Code Resolution Service Network in the Internet of ThingsCited by: 5
Author(s): Haining Yu, Hongli Zhang, Binxing Fang, Xiangzhan Yu
Software Mentions: 1
Published: about 12 years ago
10.1186/2193-1801-2-21
Large-scale solar magnetic field mapping: ICited by: 4
Author(s): Kenneth H. Schatten
Software Mentions: 1
Published: almost 12 years ago
10.1038/tp.2016.235
Maternal high-fat diet prevents developmental programming by early-life stressCited by: 51
Author(s): Marion Rincel, Amandine Lépinay, Pierre Delage, Jean Fioramonti, Vassilia Théodorou, Sophie Layé, Muriel Darnaudéry
Software Mentions: 1
Published: almost 8 years ago
10.1093/ijnp/pyv029
The Class I-Specific HDAC Inhibitor MS-275 Decreases Motivation to Consume Alcohol and Relapse in Heavy Drinking RatsCited by: 34
Author(s): Jérôme Jeanblanc, Sandrine Lemoine, Virginie Jeanblanc, Stéphanie Alaux‐Cantin, Mickaël Naassila
Software Mentions: 1
Published: over 9 years ago
10.1177/2041669518770691
Magic CircleCited by: 1
Author(s): Jan J. Koenderink, Andrea van Doorn, Johan Wagemans
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.34976
Opposite regulation of inhibition by adult-born granule cells during implicit versus explicit olfactory learningCited by: 24
Author(s): Nathalie Mandairon, Nicola Kuczewski, Florence Kermen, Jérémy Forest, Maëllie Midroit, Marion Richard, M Thévenet, Joëlle Sacquet, Christiane Linster, Anne Didier
Software Mentions: 1
Published: over 6 years ago
10.3390/ijms140816719
Endogenous Protease Nexin-1 Protects against Cerebral IschemiaCited by: 12
Author(s): Osvaldo Mirante, Melanie Price, Wilfredo Puentes, Ximena Castillo, Corinne Benakis, Jonathan Thévenet, Denis Monard, Lorenz Hirt
Software Mentions: 1
Published: over 11 years ago
10.3390/ijms20133154
Evaluation of Disease Severity and Global Transcriptome Response Induced by Citrus bark cracking viroid, Hop latent viroid, and Their Co-Infection in Hop (Humulus lupulus L.)Cited by: 26
Author(s): Nataša Štajner, Sebastjan Radišek, Ajay Kumar Mishra, Vishnu Sukumari Nath, Jaroslav Matoušek, Jernej Jakše
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21228509
A Subset of Purposeless Oral Movements Triggered by Dopaminergic Agonists Is Modulated by 5-HT2C Receptors in Rats: Implication of the Subthalamic NucleusCited by: 5
Author(s): Mélanie Lagière, Marion Bosc, Sara Whitestone, Abdelhamid Benazzouz, Abdeslam Chagraoui, Mark J. Millan, Philippe De Deurwaerdère
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms22020882
De Novo Transcriptome Sequencing of Rough Lemon Leaves (Citrus jambhiri Lush.) in Response to Plenodomus tracheiphilus InfectionCited by: 12
Author(s): R. M. Russo, Angelo Sicilia, Marco Caruso, Carmen Arlotta, Silvia Di Silvestro, Frederick G. Gmitter, Elisabetta Nicolosi, Angela Roberta Lo Piero
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijms22063191
Proteomics Data Analysis for the Identification of Proteins and Derived Proteotypic Peptides of Potential Use as Putative Drought Tolerance Markers for Quercus ilexCited by: 11
Author(s): Bonoso San-Eufrasio, Ezequiel Darío Bigatton, Víctor M. Guerrero-Sánchez, Palak Chaturvedi, Jesús V. Jorrín‐Novo, María‐Dolores Rey, María Ángeles Castillejo
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms22136760
The C-Terminal Domain of LRRK2 with the G2019S Substitution Increases Mutant A53T α-Synuclein Toxicity in Dopaminergic Neurons In VivoCited by: 7
Author(s): Noémie Cresto, Camille Gardier, Marie-Claude Gaillard, Francesco Gubinelli, Pauline Roost, Daniela Molina, Charlène Joséphine, Noëlle Dufour, Gwenaëlle Aurégan, Martine Guillermier, Suéva Bernier, Caroline Jan, Pauline Gipchtein, Philippe Hantraye, Marie-Christine Chartier-Harlin, Gilles Bonvento, Nadja Van Camp, Jean-Marc Taymans, Karine Cambon, Géraldine Liot, Alexis-Pierre Bemelmans, Emmanuel Brouillet
Software Mentions: 1
Published: over 3 years ago
10.1186/1742-2094-10-82
DAP12 and CD11b contribute to the microglial-induced death of dopaminergic neurons in vitro but not in vivo in the MPTP mouse model of Parkinson’s diseaseCited by: 11
Author(s): Kiyoka Kinugawa, Yann Monnet, Catherine Béchade, Daniel Alvarez‐Fischer, Étienne C. Hirsch, Alain Bessis, Stéphane Hunot
Software Mentions: 1
Published: over 11 years ago
10.1186/1742-2094-9-132
Increase of arginase activity in old apolipoprotein-E deficient mice under Western diet associated with changes in neurovascular unitCited by: 28
Author(s): Jérôme Badaut, Jean‐Christophe Copin, Andrew M. Fukuda, Yvan Gasche, Karl Schaller, Rafaela da Silva
Software Mentions: 1
Published: over 12 years ago
10.1186/s12974-017-0830-9
Analysis of monocyte infiltration in MPTP mice reveals that microglial CX3CR1 protects against neurotoxic over-induction of monocyte-attracting CCL2 by astrocytesCited by: 46
Author(s): Vincent R. Parillaud, Guillaume Lornet, Yann Monnet, Anne-Laure Privat, Andrei T. Haddad, Vanessa Brochard, Alain Bekaert, Camille Baudesson de Chanville, Étienne C. Hirsch, Christophe Combadière, Stéphane Hunot, Christian S. Lobsiger
Software Mentions: 1
Published: over 7 years ago
10.1017/jns.2018.10
Polyphenol-rich extract from grape and blueberry attenuates cognitive decline and improves neuronal function in aged miceCited by: 56
Author(s): Julien Bensalem, Stéphanie Dudonné, David Gaudout, Laure Servant, Frédéric Calon, Yves Desjardins, Sophie Layé, Pauline Lafenêtre, Véronique Pallet
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.6492
Regulatory T cells may participate in <i>Helicobacter pylori</i> persistence in gastric MALT lymphoma: lessons from an animal modelCited by: 18
Author(s): Amandine Marine Laur, Pauline Floch, Lucie Chambonnier, Lucie Bénéjat, Victoria Korolik, Alban Giese, Pierre Dubus, Françis Mégraud, António Bandeira, Philippe Lehours
Software Mentions: 1
Published: almost 9 years ago
10.1186/s40478-017-0444-6
PLGF, a placental marker of fetal brain defects after in utero alcohol exposureCited by: 35
Author(s): Matthieu Lecuyer, Annie Laquérriere, Soumeya Bekri, Céline Lesueur, Yasmina Ramdani, Sylvie Jégou, Arnaud Uguen, Pascale Marcorelles, Stéphane Marret, Bruno J. Gonzalez
Software Mentions: 1
Published: over 7 years ago