cran: Mercator | Projects | Ecosyste.ms: Papers

10.1186/s12870-021-02850-9

Reduced expression of a subunit gene of sucrose non-fermenting 1 related kinase, PpSnRK1βγ, confers flat fruit abortion in peach by regulating sugar and starch metabolism
Cited by: 1
Author(s): Jian Guo, Ke Cao, Jia‐Long Yao, Cecilia Deng, Yong Li, Guoqiang Zhu, Weichao Fang, Chang Wen Chen, Xinwei Wang, Jinlong Wu, Wen‐Wu Guo, Lirong Wang
Software Mentions: 2
Published: almost 4 years ago

10.1128/genomeA.00397-17

Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018
Cited by: 16
Author(s): Claudia Coleine, Sawyer Masonjones, Laura Selbmann, Laura Zucconi, Silvano Onofri, Claudia Pacelli, Jason E. Stajich
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-22080-8

De novo transcriptome analysis and gene expression profiling of an oleaginous microalga Scenedesmus acutus TISTR8540 during nitrogen deprivation-induced lipid accumulation
Cited by: 31
Author(s): Anchalee Sirikhachornkit, Anongpat Suttangkakul, Supachai Vuttipongchaikij, Piyada Juntawong
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.02977

Xylem Sap Proteomics Reveals Distinct Differences Between R Gene- and Endophyte-Mediated Resistance Against Fusarium Wilt Disease in Tomato
Cited by: 34
Author(s): Francisco J. de Lamo, Maria E. Constantin, David H. Fresno, Sjef Boeren, Martijn Rep, Frank L. W. Takken
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-019-2021-6

Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach
Cited by: 9
Author(s): Sebastián Moschen, Johanna Marino, Salvador Nicosia, Janet Higgins, Saleh Alseekh, Francisco Horacio Astigueta, Sofía A. Bengoa Luoni, Máximo Rivarola, Alisdair R. Fernie, Nicolas Blanchet, Nicolas B. Langlade, Norma Paniego, Paula Fernández, Ruth Amelia Heinz
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-25686-0

Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and Intensity Conditions Using Narrow-Band LEDs
Cited by: 57
Author(s): Kazuyoshi Kitazaki, Atsushi Fukushima, Ryo Nakabayashi, Yuji Okazaki, Makoto Kobayashi, Tetsuya Mori, Tomoko Nishizawa, Sebastian Reyes-Chin-Wo, Richard W. Michelmore, Kazuki Saito, K. Shoji, Miyako Kusano
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-29645-7

Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells
Cited by: 11
Author(s): Shinjiro Ogita, Taiji Nomura, Yasuo Kato, Yukiko Uehara‐Yamaguchi, Komaki Inoue, Takuhiro Yoshida, Tetsuya Sakurai, Kazuo Shinozaki, Keiichi Mochida
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-29842-4

The coffee bean transcriptome explains the accumulation of the major bean components through ripening
Cited by: 21
Author(s): Bing Cheng, Agnelo Furtado, Robert J. Henry
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-015-0449-x

Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits
Cited by: 36
Author(s): Shiri Freilich, Shery Lev, Itay Gonda, Eli Reuveni, Vitaly Portnoy, Elad Oren, Marc Lohse, Navot Galpaz, Einat Bar, Galil Tzuri, Guy Wissotsky, Ayala Meir, Joseph Burger, Yaakov Tadmor, Arthur A. Schaffer, Zhangjun Fei, James J. Giovannoni, Efraim Lewinsohn, Nurit Katzir
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2105-11-240

eHive: An Artificial Intelligence workflow system for genomic analysis
Cited by: 39
Author(s): Jessica Severin, Kathryn Beal, Albert J. Vilella, Stephen Fitzgerald, Michael Schuster, Leo I. Gordon, Abel Ureta-Vidal, Paul Flicek, Javier Herrero
Software Mentions: 2
Published: over 14 years ago

10.1038/s41598-019-39114-4

How an ancient, salt-tolerant fruit crop, Ficus carica L., copes with salinity: a transcriptome analysis
Cited by: 22
Author(s): Alberto Vangelisti, L. Solorzano Zambrano, Giovanni Caruso, Desiré Macheda, Rodolfo Bernardi, Gabriele Usai, Flavia Mascagni, Tommaso Giordani, Riccardo Gucci, Andrea Cavallini, Lucia Natali
Software Mentions: 2
Published: over 5 years ago

10.1534/g3.115.026898

Transcriptome Sequencing of Diverse Peanut (Arachis) Wild Species and the Cultivated Species Reveals a Wealth of Untapped Genetic Variability
Cited by: 17
Author(s): Ratan Chopra, Gloria Burow, C. E. Simpson, Jennifer Chagoya, Joann Mudge, Mark D. Burow
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-43421-1

Molecular Basis of Disease Resistance in Banana Progenitor Musa balbisiana against Xanthomonas campestris pv. musacearum
Cited by: 20
Author(s): Leena Tripathi, Jaindra Nath Tripathi, Trushar Shah, Kariuki Samwel Muiruri, Manpreet S. Katari
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-017-3584-y

Transcriptome of the floral transition in Rosa chinensis ‘Old Blush’
Cited by: 34
Author(s): Xijie Guo, Chao Yu, Le Luo, Huihua Wan, Ni Zhen, Tingliang Xu, Jiongrui Tan, Huitang Pan, Qixiang Zhang
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-10-31

Genome Projector: zoomable genome map with multiple views
Cited by: 41
Author(s): Kazuharu Arakawa, Satoshi Tamaki, Nobuaki Kono, Nobuhiro Kido, Keita Ikegami, Ryu Ogawa, Masaru Tomita
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0201480

Dissecting the subcellular membrane proteome reveals enrichment of H+ (co-)transporters and vesicle trafficking proteins in acidic zones of Chara internodal cells
Cited by: 16
Author(s): Heidi Pertl-Obermeyer, Peter Lackner, Waltraud X. Schulze, Marion C. Hoepflinger, Margit Hoeftberger, Ilse Foissner, Gerhard Obermeyer
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-63018-3

Pre-harvest climate and post-harvest acclimation to cold prevent from superficial scald development in Granny Smith apples
Cited by: 9
Author(s): Mathieu Marc, Maryline Cournol, Sylvain Hanteville, Anne-Sophie Poisson, Marie-Charlotte Guillou, Sandra Pelletier, François Laurens, C. Tessier, Claude Coureau, Jean-Pierre Renou, Mickaël Delaire, Mathilde Orsel
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2019.00892

sRNA Profiling Combined With Gene Function Analysis Reveals a Lack of Evidence for Cross-Kingdom RNAi in the Wheat – Zymoseptoria tritici Pathosystem
Cited by: 37
Author(s): Graeme J. Kettles, Bernhard J. Hofinger, Patrick J. Hu, Carlos Bayón, J. J. Rudd, Dirk Balmer, Mikaël Courbot, K. E. Hammond‐Kosack, Gabriel Scalliet, K. Kanyuka
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-67373-z

Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing
Cited by: 36
Author(s): Mathilde Paris, Roxane Boyer, Rita Jaenichen, Jochen B. W. Wolf, Marianthi Karageorgi, Jack Green, Mathilde Cagnon, Hugues Parinello, Arnaud Estoup, Mathieu Gautier, Nicolas Gompel, Benjamin Prud’homme
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-70315-4

Exploring sunflower responses to Sclerotinia head rot at early stages of infection using RNA-seq analysis
Cited by: 13
Author(s): Mónica Fass, Máximo Rivarola, Guillermo F. Ehrenbolger, Carla Maringolo, Juan Francisco Montecchia, Facundo Quiróz, Francisco García‐García, Joaquín Dopazo Blázquez, H. Esteban Hopp, Ruth Amelia Heinz, Norma Paniego, Verónica Viviana Lia
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2016.01889

MADS-Box Genes and Gibberellins Regulate Bolting in Lettuce (Lactuca sativa L.)
Cited by: 24
Author(s): Yingyan Han, Zijing Chen, Shanshan Lv, Kang Ning, JI Xue-liang, Xueying Liu, Qian Wang, Renyi Liu, Fan Su, Xiaolan Zhang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-020-73140-x

Genome wide in-silico miRNA and target network prediction from stress responsive Horsegram (Macrotyloma uniflorum) accessions
Cited by: 10
Author(s): Jeshima Khan Yasin, Bharat Mishra, M. Arumugam Pillai, Nidhi Verma, Shabir Hussain Wani, Hosam O. Elansary, Diaa O. El-Ansary, Priyanka Pandey, Viswanathan Chinnusamy
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-74410-4

De novo transcriptome analysis of Chlorella sorokiniana: effect of glucose assimilation, and moderate light intensity
Cited by: 14
Author(s): Siti Nor Ani Azaman, D. Wong, Sheau Wei Tan, Fatimah Md. Yusoff, Norio Nagao, Swee Keong Yeap
Software Mentions: 2
Published: about 4 years ago

10.1186/s12870-014-0329-9

Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case
Cited by: 19
Author(s): David Amar, Itziar Frades, Agnieszka Danek, Tatyana Goldberg, Sanjeev Sharma, Pete E. Hedley, Estelle Proux‐Wéra, Erik Andréasson, Ron Shamir, Oren Tzfadia, Erik Alexandersson
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-020-79194-1

Genomic signatures of the evolution of defence against its natural enemies in the poisonous and medicinal plant Datura stramonium (Solanaceae)
Cited by: 11
Author(s): Ivan M. De‐la‐Cruz, Asis Hallab, Ulises Olivares-Pinto, Rosalinda Tapia‐López, Sabina Velázquez-Márquez, Daniel Piñero, Ken Oyama, Björn Usadel, Juan Núñez–Farfán
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83328-4

The hyperbolic geometry of financial networks
Cited by: 4
Author(s): Martin Keller‐Ressel, Stephanie Nargang
Software Mentions: 2
Published: over 3 years ago

10.1093/database/baz110

RiceRelativesGD: a genomic database of rice relatives for rice research
Cited by: 10
Author(s): Limin Mao, Meihong Chen, Qinjie Chu, Jia Lu, Most. Humaira Sultana, Dongya Wu, Xiang-Dong Kong, Jie Qiu, Chu-Yu Ye, Qian‐Hao Zhu, Xi Chen
Software Mentions: 2
Published: almost 6 years ago

10.1093/database/baw146

TBro: visualization and management ofde novotranscriptomes
Cited by: 3
Author(s): Markus J. Ankenbrand, Lorenz Weber, Dirk Becker, Frank Förster, Felix Bemm
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2020.00692

Exploring DNA Variant Segregation Types Enables Mapping Loci for Recessive Phenotypic Suppression of Columnar Growth in Apple
Cited by: 4
Author(s): Laura Dougherty, Tuanhui Bai, Susan K. Brown, Kenong Xu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-92600-6

Meta-analysis of RNA-Seq studies reveals genes with dominant functions during flower bud endo- to eco-dormancy transition in Prunus species
Cited by: 9
Author(s): Monica Canton, Cristian Forestan, Claudio Bonghi, Serena Varotto
Software Mentions: 2
Published: over 3 years ago

10.1155/2015/391234

Transcriptome Analysis of Gelatin Seed Treatment as a Biostimulant of Cucumber Plant Growth
Cited by: 23
Author(s): H. T. Wilson, Kenong Xu, A.G. Taylor
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12870-021-03110-6

Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time
Cited by: 7
Author(s): Jens Theine, Daniela Holtgräwe, Katja Herzog, Florian Schwander, Anna Kicherer, Ludger Hausmann, Prisca Viehöver, Reinhard Töpfer, Bernd Weißhaar
Software Mentions: 2
Published: over 3 years ago

10.3390/s20061658

Aerial Imagery Based on Commercial Flights as Remote Sensing Platform
Cited by: 5
Author(s): Toni Mastelić, Josip Lörincz, Ivan Ivandić, Matea Boban
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-015-1939-9

A transcriptome approach towards understanding the development of ripening capacity in ‘Bartlett’ pears (Pyrus communis L.)
Cited by: 24
Author(s): Ngoc T. Nham, Sérgio Tonetto de Freitas, Andrew J. Macnish, Kevin M. Carr, Trisha Kietikul, Angelo Jose Guilatco, Cai‐Zhong Jiang, Florence Negre-Zakharov, Elizabeth Mitcham
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2015.00636

Host and non-host roots in rice: cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi
Cited by: 67
Author(s): Valentina Fiorilli, Marta Vallino, Chiara Biselli, Antonella Faccio, Paolo Bagnaresi, Paola Bonfante
Software Mentions: 2
Published: over 9 years ago

10.3390/jof6030148

Proteomic and Transcriptomic Analyses Indicate Metabolic Changes and Reduced Defense Responses in Mycorrhizal Roots of Oeceoclades maculata (Orchidaceae) Collected in Nature
Cited by: 12
Author(s): Rafael Borges da Silva Valadares, Silvia Perotto, Adriano Reis Lucheta, Eder C. Santos, Renato R. M. Oliveira, Márcio Rodrigues Lambais
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2014.00658

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling
Cited by: 50
Author(s): Piyada Juntawong, Anchalee Sirikhachornkit, Rachaneeporn Pimjan, Chutima Sonthirod, Duangjai Sangsrakru, Thippawan Yoocha, Sithichoke Tangphatsornruang, Peerasak Srinives
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-016-2833-9

Transcriptome profiling of two olive cultivars in response to infection by the CoDiRO strain of Xylella fastidiosa subsp. pauca
Cited by: 98
Author(s): Annalisa Giampetruzzi, Massimiliano Morelli, María Saponari, Giuliana Loconsole, Michela Chiumenti, D. Boscia, V. Savino, G. P. Martelli, P. Saldarelli
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-019-6173-4

Physiological and transcriptome analysis reveal molecular mechanism in Salvia miltiorrhiza leaves of near-isogenic male fertile lines and male sterile lines
Cited by: 3
Author(s): Ruihong Wang, Han Jiang, Ziyun Zhou, Hongbo Guo, Juane Dong
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.58242

Molecular rationale for antibody-mediated targeting of the hantavirus fusion glycoprotein
Cited by: 17
Author(s): Ilona Rissanen, Robert Stass, Stefanie A. Krumm, Jeffrey Seow, Ruben J.G. Hulswit, Guido C. Paesen, Jussi Hepojoki, Olli Vapalahti, Åke Lundkvist, Olivier Reynard, Viktor E. Volchkov, Katie J. Doores, J.T. Huiskonen, Thomas A. Bowden
Software Mentions: 2
Published: almost 4 years ago

10.3389/fnins.2020.590029

Changes in Day/Night Activity in the 6-OHDA-Induced Experimental Model of Parkinson’s Disease: Exploring Prodromal Biomarkers
Cited by: 7
Author(s): Catalina Requejo, Karmele López de Ipiña, José Ángel Ruiz-Ortega, Elsa Fernández, Pilar M. Calvo, Teresa Morera-Herreras, Cristina Miguélez, Laura Cardona-Grifoll, Hodei Cepeda, Luisa Ugedo, José Vicente Lafuente
Software Mentions: 2
Published: about 4 years ago

10.3389/fninf.2015.00026

Golgi: Interactive Online Brain Mapping
Cited by: 5
Author(s): Ramsay A. Brown, Larry W. Swanson
Software Mentions: 2
Published: about 9 years ago

10.3389/fnana.2019.00098

Automated Individualization of Size-Varying and Touching Neurons in Macaque Cerebral Microscopic Images
Cited by: 8
Author(s): Zhenzhen You, Yaël Balbastre, Clément Bouvier, Anne‐Sophie Hérard, Pauline Gipchtein, Philippe Hantraye, Caroline Jan, Nicolas Souedet, Thierry Delzescaux
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21010233

Dissection of Dynamic Transcriptome Landscape of Leaf, Bract, and Lupulin Gland in Hop (Humulus lupulus L.)
Cited by: 19
Author(s): Ajay Kumar Mishra, Tomáš Kocábek, Vishnu Sukumari Nath, Praveen Awasthi, Ankita Shrestha, Uday Kumar Killi, Jernej Jakše, Josef Patzak, Karel Krofta, Jaroslav Matoušek
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21072331

Sugar Beet (Beta vulgaris) Guard Cells Responses to Salinity Stress: A Proteomic Analysis
Cited by: 15
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Leiting Li, Heng Zhang, Zhong‐Hua Chen, Rainer Hedrich, Richard Wilson, Sergey Shabala
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-15-527

Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.)
Cited by: 73
Author(s): Eli Meyer, Michael J. Aspinwall, David B. Lowry, Juan Diego Palacio-Mejía, Tierney L. Logan, Philip A. Fay, Thomas E. Juenger
Software Mentions: 2
Published: almost 11 years ago

10.3389/fnbeh.2014.00053

Interactions with the young down-regulate adult olfactory neurogenesis and enhance the maturation of olfactory neuroblasts in sheep mothers
Cited by: 23
Author(s): Maïna Brus, Maryse Meurisse, Matthieu Keller, Frédéric Lévy
Software Mentions: 2
Published: almost 11 years ago

10.1111/pbi.13033

Morphological dissection and cellular and transcriptome characterizations of bamboo pith cavity formation reveal a pivotal role of genes related to programmed cell death
Cited by: 30
Author(s): Lin Guo, Xuepeng Sun, Zhongru Li, Yujun Wang, Zhangjun Fei, Chen Jiao, Jianyuan Feng, Dingfan Cui, Xingyu Feng, Yulong Ding, Chunxia Zhang, Qiang Wei
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2018.01676

Modification of Barley Plant Productivity Through Regulation of Cytokinin Content by Reverse-Genetics Approaches
Cited by: 52
Author(s): Katarína Holubová, Goetz Hensel, Petr Vojta, Petr Tarkowski, Véronique Bergougnoux, Petr Galuszka
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21217934

Molecular Mechanisms Underlying Sugarcane Response to Aluminum Stress by RNA-Seq
Cited by: 12
Author(s): Thiago Mateus Rosa-Santos, Renan Gonçalves da Silva, Poornasree Kumar, Pratibha Kottapalli, Chiquito J. Crasto, Kameswara Rao Kottapalli, Suzelei C. França, Sônia Marli Zingaretti
Software Mentions: 2
Published: about 4 years ago

10.3390/plants10071423

OMICs, Epigenetics, and Genome Editing Techniques for Food and Nutritional Security
Cited by: 11
Author(s): Yuri Gogolev, Sunny Ahmar, Bala Anı Akpınar, Hikmet Budak, A. S. Kiryushkin, Vladimir Gorshkov, Goetz Hensel, Kirill N. Demchenko, Igor Kovalchuk, Freddy Mora‐Poblete, Tuğdem Muslu, Ivan Tsers, Narendra Singh Yadav, Viktor Korzun
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22010428

Salinity Effects on Guard Cell Proteome in Chenopodium quinoa
Cited by: 19
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Lana Shabala, Leiting Li, Ayesha Tahir, Min Yu, Rainer Hedrich, Zhong‐Hua Chen, Richard Wilson, Heng Zhang, Sergey Shabala
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-020-06883-6

RNA-sequencing based gene expression landscape of guava cv. Allahabad Safeda and comparative analysis to colored cultivars
Cited by: 16
Author(s): Amandeep Mittal, Inderjit Singh Yadav, Neelima Arora, Rajbir Singh Boora, Meenakshi Mittal, Parwinder Kaur, William Erskine, Parveen Chhuneja, M. I. S. Gill, Kuldeep Singh
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22063094

Transcriptional Changes in Potato Sprouts upon Interaction with Rhizoctonia solani Indicate Pathogen-Induced Interference in the Defence Pathways of Potato
Cited by: 11
Author(s): Rita Zrenner, Bart Verwaaijen, Franziska Genzel, Burkhardt Flemer, Rita Grosch
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2014.00479

Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree
Cited by: 72
Author(s): Luis C. Mejía, Edward Allen Herre, Jed P. Sparks, Klaus Winter, M. García, Sunshine A. Van Bael, Joseph P. Stitt, Zi Shi, Yufan Zhang, Mark J. Guiltinan, Siela N. Maximova
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2164-14-793

Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum)
Cited by: 38
Author(s): Yang Ping Lee, Federico M. Giorgi, Marc Lohse, Kotryna Kvederavičiūtė, Sven Klages, Björn Usadel, Irute Meskiene, Richard Reinhardt, Dirk K. Hincha
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2016.01013

Shotgun Label-free Proteomic Analysis of Clubroot (Plasmodiophora brassicae) Resistance Conferred by the Gene Rcr1 in Brassica rapa
Cited by: 28
Author(s): Tao Song, Mingguang Chu, Rachid Lahlali, Fengqun Yu, Gary Peng
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2020.00872

Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach
Cited by: 9
Author(s): Nima Ranjbar Sistani, Getinet Desalegn, Hans‐Peter Kaul, Stefanie Wienkoop
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2017.02021

Transcript Profiling Identifies Gene Cohorts Controlled by Each Signal Regulating Trans-Differentiation of Epidermal Cells of Vicia faba Cotyledons to a Transfer Cell Phenotype
Cited by: 5
Author(s): Huiming Zhang, Simon Wheeler, Xue Xia, Kim Colyvas, Christina E. Offler, John W. Patrick
Software Mentions: 2
Published: almost 7 years ago

10.1093/jxb/eru373

Comparative physiological, metabolomic, and transcriptomic analyses reveal mechanisms of improved abiotic stress resistance in bermudagrass [Cynodon dactylon (L). Pers.] by exogenous melatonin
Cited by: 387
Author(s): Shi Hong, Chuan Jiang, Tiantian Ye, Dun Xian Tan, Russel J. Reíter, Heng Zhang, Renyi Liu, Zhulong Chan
Software Mentions: 2
Published: about 10 years ago

10.1002/jcc.26559

<scp> MonteCarbo </scp> : A software to generate and dock multifunctionalized ring molecules
Cited by: 0
Author(s): Santiago Alonso-Gil
Software Mentions: 2
Published: over 3 years ago

10.1093/jxb/erv118

Understanding developmental and adaptive cues in pine through metabolite profiling and co-expression network analysis
Cited by: 33
Author(s): Rafael A. Cañas, Javier Canales, Carmen Muñoz-Hernández, José Manuel Granados, Concepción Ávila, Maria Luisa García-Martín, Francisco M. Cánovas
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-020-02663-2

Pitchers of Nepenthes khasiana express several digestive-enzyme encoding genes, harbor mostly fungi and probably evolved through changes in the expression of leaf polarity genes
Cited by: 5
Author(s): Jeremy Dkhar, Yogendra Bhaskar, Andrew M. Lynn, Ashwani Pareek
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0012770

Distinct Transcriptome Expression of the Temporal Cortex of the Primate Microcebus murinus during Brain Aging versus Alzheimer's Disease-Like Pathology
Cited by: 30
Author(s): Ronza Abdel Rassoul, Sabine Alves, Véronique Pantesco, John De Vos, Bernard Michel, Martine Perret, Nadine Mestre‐Francés, Jean‐Michel Verdier, Gina Devau
Software Mentions: 2
Published: about 14 years ago

10.1186/s12864-016-2660-z

Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in grapes (Vitis vinifera L.) are differentially modulated accordingly to fruit size
Cited by: 53
Author(s): D. Wong, Rodrigo Lopez Gutierrez, Nicolas Dimopoulos, Grégory A. Gambetta, Simone D. Castellarin
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-018-5384-4

Diffusible signal factor (DSF)-mediated quorum sensing modulates expression of diverse traits in Xanthomonas citri and responses of citrus plants to promote disease
Cited by: 30
Author(s): Lei Li, Jinyun Li, Yunzeng Zhang, Nian Wang
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0242984

Mapping the co-evolution of artificial intelligence, robotics, and the internet of things over 20 years (1998-2017)
Cited by: 5
Author(s): Katy Börner, Olga Scrivner, Leonard E. Cross, M. Gallant, Shutian Ma, Adam S. Martin, Lisel Record, Haici Yang, Jonathan M. Dilger
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-015-1414-7

The salinity tolerant poplar database (STPD): a comprehensive database for studying tree salt-tolerant adaption and poplar genomics
Cited by: 7
Author(s): Ying Ma, Ting Xu, Dongshi Wan, Tao Ma, Shengjun Shi, Jianquan Liu, Quanjun Hu
Software Mentions: 2
Published: over 9 years ago

10.1093/jxb/eraa099

Transcriptional analysis of arogenate dehydratase genes identifies a link between phenylalanine biosynthesis and lignin biosynthesis
Cited by: 9
Author(s): Jorge El-Azaz, Fernando De la Torre, María Belén Pascual, Sandrine Debille, Francis Canlet, Luc Harvengt, Jean-François Trontin, Concepción Ávila
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-13-129

Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
Cited by: 68
Author(s): Sook Jung, Alessandro Cestaro, Michela Troggio, Dorrie Main, Ping Zheng, Il-Hyung Cho, Kevin M. Folta, Bryon Sosinski, Albert G. Abbott, Jean‐Marc Celton, Pere Arús, Vladimir Shulaev, Ignazio Verde, Michèle Morgante, Daniel S. Rokhsar, Riccardo Velasco, Daniel J. Sargent
Software Mentions: 2
Published: almost 13 years ago

10.1093/jxb/eraa263

Oxford Nanopore sequencing: new opportunities for plant genomics?
Cited by: 42
Author(s): Kathryn Dumschott, Maximilian Schmidt, Harmeet Singh Chawla, Rod J. Snowdon, Björn Usadel
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-014-0376-2

Allelic diversity in the transcriptomes of contrasting rust-infected genotypes of Lathyrus sativus, a lasting resource for smart breeding
Cited by: 36
Author(s): Nuno Felipe Almeida, Susana T. Leitão, Nicolas Krezdorn, Björn Rotter, Peter Winter, Diego Rubiales, María Carlota Vaz Patto
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0114557

Juvenile Osprey Navigation during Trans-Oceanic Migration
Cited by: 18
Author(s): Travis W. Horton, Richard O. Bierregaard, Peyman Zawar-Reza, Richard N. Holdaway, Paul M. Sagar
Software Mentions: 2
Published: almost 10 years ago

10.3390/proteomes7010010

Comparative Proteomic Analysis Unveils Critical Pathways Underlying the Role of Nitrogen Fertilizer Treatment in American Elderberry
Cited by: 1
Author(s): Bo Yang, Andrew L. Thomas, C. Michael Greenlief
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-017-1138-8

Gene coexpression network analysis of fruit transcriptomes uncovers a possible mechanistically distinct class of sugar/acid ratio-associated genes in sweet orange
Cited by: 20
Author(s): Liang Qiao, Minghao Cao, Jian Zheng, Yihong Zhao, Zhi‐Liang Zheng
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-016-2613-6

A subtracted cDNA library identifies genes up-regulated during PHOT1-mediated early step of de-etiolation in tomato (Solanum lycopersicum L.)
Cited by: 4
Author(s): Petra Hloušková, Véronique Bergougnoux
Software Mentions: 2
Published: over 8 years ago

10.3390/molecules24081603

Profiling of Seed Proteome in Pea (Pisum sativum L.) Lines Characterized with High and Low Responsivity to Combined Inoculation with Nodule Bacteria and Arbuscular Mycorrhizal Fungi
Cited by: 29
Author(s): Татьяна Васильевна Мамонтова, Alexey М. Afonin, Christian Ihling, Alena Soboleva, Elena Lukasheva, Anton S. Sulima, O. Y. Shtark, Gulnar A. Akhtemova, М. Н. Повыдыш, Andrea Sinz, Andrej Frolov, Vladimir A. Zhukov, И. А. Тихонович
Software Mentions: 2
Published: over 5 years ago

10.1038/s41597-019-0191-6

De novo transcriptome assembly and analysis of the freshwater araphid diatom Fragilaria radians, Lake Baikal
Cited by: 14
Author(s): Yuri P. Galachyants, Yulia Zakharova, N. A. Volokitina, Alexey Anatolyevich Morozov, Ye. V. Likhoshway, М.А. Грачев
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2014.00325

Genome-based analysis of the transcriptome from mature chickpea root nodules
Cited by: 17
Author(s): Fabian Afonso-Grunz, Carlos Molina, Klaus Hoffmeier, Lukas Rycak, Himabindu Kudapa, Rajeev K. Varshney, Jean‐Jacques Drevon, Peter Winter, G. Kahl
Software Mentions: 2
Published: over 10 years ago

10.1186/s40462-014-0024-3

Seasonal migrations of North Atlantic minke whales: novel insights from large-scale passive acoustic monitoring networks
Cited by: 54
Author(s): Denise Risch, Manuel Castellote, Christopher W. Clark, G. E. Davis, Peter J. Dugan, Lynne Hodge, Anurag Kumar, Klaus Lücke, David K. Mellinger, Sharon L. Nieukirk, Cristian Marian Popescu, Christian Ramp, Andrew J. Read, Aaron N. Rice, Mónica Silva, Ursula Siebert, Kathleen M. Stafford, Hans Verdaat, Sofie M. Van Parijs
Software Mentions: 2
Published: about 10 years ago

10.1186/s12864-016-2779-y

Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome
Cited by: 15
Author(s): Yunzeng Zhang, G. A. Barthe, Jude W. Grosser, Nian Wang
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2016.00486

Integrated Systems Biology Analysis of Transcriptomes Reveals Candidate Genes for Acidity Control in Developing Fruits of Sweet Orange (Citrus sinensis L. Osbeck)
Cited by: 25
Author(s): Dingquan Huang, Yihong Zhao, Minghao Cao, Liang Qiao, Zhi‐Liang Zheng
Software Mentions: 2
Published: over 8 years ago

10.1038/s41438-017-0012-z

Histological, hormonal and transcriptomic reveal the changes upon gibberellin-induced parthenocarpy in pear fruit
Cited by: 72
Author(s): Lulu Liu, Zhigang Wang, Jianlong Liu, Fengxia Liu, Rui Zhai, Chunqin Zhu, Huibin Wang, Fengwang Ma, Lingfei Xu
Software Mentions: 2
Published: almost 7 years ago

10.1007/s10967-018-6249-7

Estimate of Fukushima-derived radiocaesium in the North Pacific Ocean in summer 2012
Cited by: 13
Author(s): Yayoi Inomata, Michio Aoyama, Takaki Tsubono, Daisuke Tsumune, Yuichiro Kumamoto, Hiroki Nagai, Toshio Yamagata, Mizuo Kajino, Taichu Y. Tanaka, T. T. Sekiyama, Eitarou Oka, Masatoshi Yamada
Software Mentions: 1
Published: about 6 years ago

10.1186/s40478-020-01089-z

Prenatal alcohol exposure is a leading cause of interneuronopathy in humans
Cited by: 13
Author(s): Florent Marguet, Gaëlle Friocourt, Mélanie Brosolo, Fanny Sauvestre, Pascale Marcorelles, Céline Lesueur, Stéphane Marret, Bruno J. Gonzalez, Annie Laquerrière
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2407-13-63

Rac3 induces a molecular pathway triggering breast cancer cell aggressiveness: differences in MDA-MB-231 and MCF-7 breast cancer cell lines
Cited by: 77
Author(s): Caroline Gest, Ulrich Joimel, Lv‐Yin Huang, Linda-Louise Pritchard, Alexandre Petit, Charlène Dulong, Catherine Buquet, Cao Hu, Pezhman Mirshahi, Marc Laurent, Françoise Fauvel-Lafève, L. Cazin, Jean‐Pierre Vannier, He Lű, Jeannette Soria, Hong Li, Rémi Varin, Claudine Soria
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-13-600

The Yak genome database: an integrative database for studying yak biology and high-altitude adaption
Cited by: 30
Author(s): Quanjun Hu, Tao Ma, Kun Wang, Ting Xu, Jianquan Liu, Qiang Qiu
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-015-2177-x

Transcriptome-wide analysis supports environmental adaptations of two Pinus pinaster populations from contrasting habitats
Cited by: 20
Author(s): Rafael A. Cañas, Isabel Feito, Francisco Fuente-Maqueda, Concepción Ávila, Juan Majada, Francisco M. Cánovas
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-15-891

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
Cited by: 149
Author(s): Jonathan Grandaubert, Russell Lowe, Jessica L. Soyer, Conrad L. Schoch, Angela P. Van de Wouw, Isabelle Fudal, Barbara Robbertse, Nicolas Lapalu, Matthew G. Links, Bénédicte Ollivier, Juliette Linglin, Valérie Barbe, Sophie Mangenot, Corinne Cruaud, M. Hossein Borhan, Barbara J. Howlett, Marie‐Hélène Balesdent, Thierry Rouxel
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-017-3916-y

Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles
Cited by: 36
Author(s): Richard Cronn, Peter C. Dolan, Sanjuro Jogdeo, Jill L. Wegrzyn, David B. Neale, J. Bradley St. Clair, Dee R. Denver
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-14-852

Analysis of sea-island cotton and upland cotton in response to Verticillium dahliaeinfection by RNA sequencing
Cited by: 71
Author(s): Quan Sun, Huaizhong Jiang, Xiaoyan Zhu, Weina Wang, Xu He, Yùzhēn Shí, Yǒulù Yuán, Xinying Du, Yingfan Cai
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-021-07777-x

De novo transcriptome analysis of white teak (Gmelina arborea Roxb) wood reveals critical genes involved in xylem development and secondary metabolism
Cited by: 1
Author(s): Mary Luz Yaya Lancheros, Krishan Mohan, Vimal Kumar Balasubramanian, Lavanya Dampanaboina, Venugopal Mendu, Wilson Terán
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-15-618

Characterization of the MLO gene family in Rosaceae and gene expression analysis in Malus domestica
Cited by: 83
Author(s): Stefano Pessina, Stefano Pavan, Domenico Catalano, Alessandra Gallotta, R.G.F. Visser, Yuling Bai, Mickaël Malnoy, Henk J. Schouten
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-14-737

Integrated transcriptomics and metabolomics decipher differences in the resistance of pedunculate oak to the herbivore Tortrix viridanaL.
Cited by: 34
Author(s): Birgit Kersten, Andrea Ghirardo, Jörg‐Peter Schnitzler, Basem Kanawati, Philippe Schmitt‐Kopplin, Matthias Fladung, Hilke Schroeder
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-7-311

Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns
Cited by: 72
Author(s): Colin N. Dewey, Igor B. Rogozin, Eugene V. Koonin
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12864-019-6339-0

Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight
Cited by: 1
Author(s): Shimin Fu, Jonathan Shao, Avijit Roy, R. H. Brlansky, Changyong Zhou, John Hartung
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-12-100

Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)
Cited by: 38
Author(s): Satya S. Narina, Ramesh Buyyarapu, Kameswara Rao Kottapalli, Alieu Sartie, Mohamed I Ali, Robert Asiedu, Mignouna J D Hodeba, Brian Sayre, Brian E. Scheffler
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12870-014-0328-x

Transcriptomic events associated with internal browning of apple during postharvest storage
Cited by: 70
Author(s): Ιfigeneia Mellidou, Kim Buts, Darwish Hatoum, Quang Tri Ho, Jason W. Johnston, Christopher B. Watkins, Robert J. Schaffer, Nigel E. Gapper, Jim Giovannoni, David R. Rudell, Maarten Hertog, Bart Nicolaı̈
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2229-14-124

Functional identification of genes responsible for the biosynthesis of 1-methoxy-indol-3-ylmethyl-glucosinolate in Brassica rapa ssp. chinensis
Cited by: 15
Author(s): Melanie Wiesner, Monika Schreiner, Rita Zrenner
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-021-02962-2

Transcriptome dynamic landscape underlying the improvement of maize lodging resistance under coronatine treatment
Cited by: 3
Author(s): Zhaobin Ren, Xing Wang, Qun Tao, Qing Guo, Yuyi Zhou, Fei Yi, Guanmin Huang, Yanxia Li, Mingcai Zhang, Zhaohu Li, Liusheng Duan
Software Mentions: 1
Published: over 3 years ago

Projects: cran: Mercator

Papers Mentioning Mercator 347