cran: MASS | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0256321

Environmental factors shaping bacterial, archaeal and fungal community structure in hydrothermal sediments of Guaymas Basin, Gulf of California
Cited by: 13
Author(s): Gustavo A. Ramírez, Paraskevi Mara, Taylor R. Sehein, Gunter Wegener, Christopher R. Chambers, Samantha B. Joye, Richard N. Peterson, Aurélie Philippe, Gaëtan Burgaud, Virginia P. Edgcomb, Andreas Teske
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0169805

Novel Analysis of Immune Cells from Nasal Microbiopsy Demonstrates Reliable, Reproducible Data for Immune Populations, and Superior Cytokine Detection Compared to Nasal Wash
Cited by: 47
Author(s): Simon P. Jochems, Katherine Piddock, Jamie Rylance, Hugh Adler, Beatriz F. Carniel, Andrea Collins, Jenna F. Gritzfeld, Carole A. Hancock, Helen Hill, Jesús Reiné, Alexandra L. Seddon, Carla Solórzano, Syba Sunny, A Zachary Trimble, A. Wright, Seher Zaidi, Stephen B. Gordon, Daniela M. Ferreira
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2021.673072

Genome-Wide Association Studies of Seed Performance Traits in Response to Heat Stress in Medicago truncatula Uncover MIEL1 as a Regulator of Seed Germination Plasticity
Cited by: 4
Author(s): Zhijuan Chen, Joseph Ly Vu, Benoît Ly Vu, Julia Buitink, Olivier Leprince, Jérôme Verdier
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.1777

Maternal effects as drivers of sibling competition in a parent–offspring conflict context? An experimental test
Cited by: 11
Author(s): Thomas Merkling, Charlotte Perrot, Fabrice Helfenstein, Jean‐Baptiste Ferdy, Laurent Gaillard, Emilie Lefol, Emmanuelle Voisin, Scott A. Hatch, Étienne Danchin, Pierrick Blanchard
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0100037

Methods for Estimating Population Density in Data-Limited Areas: Evaluating Regression and Tree-Based Models in Peru
Cited by: 12
Author(s): Weston Anderson, Seth D. Guikema, B. F. Zaitchik, William Pan
Software Mentions: 3
Published: over 12 years ago

10.1186/s40478-019-0741-3

High-throughput microscopy exposes a pharmacological window in which dual leucine zipper kinase inhibition preserves neuronal network connectivity
Cited by: 12
Author(s): Marlies Verschuuren, Peter Verstraelen, Gerardo Garcıa-Dıaz Barriga, Ines Cilissen, Emma Coninx, Mieke Verslegers, Peter H. Larsen, Rony Nuydens, Winnok H. De Vos
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0136047

Intraspecific Phenotypic Variation and Morphological Divergence of Strains of Folsomia candida (Willem) (Collembola: Isotomidae), the "Standard" Test Springtaill
Cited by: 11
Author(s): Thomas N. Tully, Mikhail Potapov
Software Mentions: 3
Published: about 11 years ago

10.1002/ece3.2382

Models of Eucalypt phenology predict bat population flux
Cited by: 29
Author(s): J. R. Giles, Raina K. Plowright, Peggy Eby, Alison J. Peel, Hamish McCallum
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0221131

Population dynamics of Pinfish in the eastern Gulf of Mexico (1998-2016)
Cited by: 11
Author(s): Meaghan E. Faletti, Dinorah H. Chacin, Jonathan A. Peake, Timothy C. MacDonald, Christopher D. Stallings
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.1995

Postmating-prezygotic isolation between two allopatric populations ofDrosophila montana: fertilisation success differs under sperm competition
Cited by: 5
Author(s): Outi Ala‐Honkola, Michael G. Ritchie, Paris Veltsos
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2016.02064

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype
Cited by: 76
Author(s): Jakson Leite, Doreen Fischer, Luc Felicianus Marie Rouws, Paulo Ivan Fernandes‐Júnior, Andreas Hofmann, Susanne Kublik, Michael Schloter, Gustavo Ribeiro Xavier, Viviane Radl
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0068948

Development of a Gravid Trap for Collecting Live Malaria Vectors Anopheles gambiae s.l.
Cited by: 13
Author(s): Sisay Dugassa, Jenny M. Lindh, Florence Oyieke, Wolfgang R Mukabana, Steve W. Lindsay, Ulrike Fillinger
Software Mentions: 3
Published: over 13 years ago

10.1002/ece3.3542

Precopulatory but not postcopulatory male reproductive traits diverge in response to mating system manipulation inDrosophila melanogaster
Cited by: 15
Author(s): Kristina U. Wensing, Mareike Koppik, Claudia Fricke
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0204425

An improved machine learning pipeline for urinary volatiles disease detection: Diagnosing diabetes
Cited by: 22
Author(s): Andrea S. Martinez-Vernon, James A. Covington, Ramesh P. Arasaradnam, Siavash Esfahani, Nicola O’Connell, Ioannis Kyrou, Richard S. Savage
Software Mentions: 3
Published: about 8 years ago

10.1038/ismej.2014.215

Evolution of species interactions determines microbial community productivity in new environments
Cited by: 118
Author(s): Francesca Fiegna, Alejandra Moreno‐Letelier, Thomas Bell, Timothy G. Barraclough
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0235078

The first juvenile dromaeosaurid (Dinosauria: Theropoda) from Arctic Alaska
Cited by: 10
Author(s): Alfio Alessandro Chiarenza, Anthony R. Fiorillo, Ronald S. Tykoski, Paul J. McCarthy, Peter P. Flaig, Dori L. Contreras
Software Mentions: 3
Published: about 6 years ago

10.1002/ece3.2241

Seeds, browse, and tooth wear: a sheep perspective
Cited by: 43
Author(s): Anusha Ramdarshan, Cécile Blondel, Noël Brunetière, Arthur Francisco, Denis Gautier, Jérôme Surault, Géraldine Garcia
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0114570

Diversity, Distribution and Hydrocarbon Biodegradation Capabilities of Microbial Communities in Oil-Contaminated Cyanobacterial Mats from a Constructed Wetland
Cited by: 50
Author(s): Raeid M. M. Abed, Samiha Al-Kharusi, Stéphane Prigent, Tom R Headley
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0225819

A co-registration investigation of inter-word spacing and parafoveal preview: Eye movements and fixation-related potentials
Cited by: 5
Author(s): Federica Degno, Otto Loberg, Chuanli Zang, Manman Zhang, Nick Donnelly, Simon Paul Liversedge
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0223865

Honey bee and native solitary bee foraging behavior in a crop with dimorphic parental lines
Cited by: 6
Author(s): M. Cecilia Estravis-Barcala, Florencia Palottini, Walter M. Farina
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0105159

Interplay between Parasitism and Host Ontogenic Resistance in the Epidemiology of the Soil-Borne Plant Pathogen Rhizoctonia solani
Cited by: 6
Author(s): Tabassome Simon, Ronan Le Cointe, Patrick Delarue, Stéphanie Morlière, Françoise Montfort, Maxime Hervé, Sylvain Poggi
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0223071

Respiratory variations in pulse pressure and photoplethysmographic waveform amplitude during positive expiratory pressure and continuous positive airway pressure in a model of progressive hypovolemia
Cited by: 0
Author(s): Ingrid Elise Hoff, Jonny Hisdal, Svein Aslak Landsverk, Jo Røislien, Knut Arvid Kirkebøen, Lars Øivind Høiseth
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.2303

Reintroduction of rare arable plants by seed transfer. What are the optimal sowing rates?
Cited by: 18
Author(s): M. Lang, Julia Prestele, Christina Fischer, Johannes Kollmann, Harald Albrecht
Software Mentions: 3
Published: about 10 years ago

10.1186/s12864-017-3632-7

Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats
Cited by: 39
Author(s): Claude Kwe Yinda, Roland Zell, Ward Deboutte, Mark Zeller, Nádia Conceição-Neto, Elisabeth Heylen, Piet Maes, Nick J. Knowles, Stephen Mbigha Ghogomu, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.2185

The effect of diet and time after bacterial infection on fecundity, resistance, and tolerance in Drosophila melanogaster
Cited by: 56
Author(s): Megan A. M. Kutzer, Sophie A. O. Armitage
Software Mentions: 3
Published: over 10 years ago

10.1002/ece3.6173

Seasonal dietary shifts enhance parasite transmission to lake salmonids during ice cover
Cited by: 7
Author(s): Sebastian Prati, Eirik Haugstvedt Henriksen, Rune Knudsen, Per‐Arne Amundsen
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-42654-4

Epigenome-wide Analysis Identifies Genes and Pathways Linked to Neurobehavioral Variation in Preterm Infants
Cited by: 37
Author(s): Todd M. Everson, Carmen J. Marsit, T. Michael O’Shea, Amber Burt, Karen Hermetz, Brian S. Carter, Jennifer Helderman, Julie A. Hofheimer, Elisabeth C. McGowan, Charles R. Neal, Steven L. Pastyrnak, Lynne M. Smith, Antoine Soliman, Sheri A. DellaGrotta, Lynne M. Dansereau, Jamés F. Padbury, Barry M. Lester
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.7025

Resource‐driven colonization by cod in a high Arctic food web
Cited by: 8
Author(s): Edda Johannesen, Nigel G. Yoccoz, Torkild Tveraa, Nancy L. Shackell, K. Ellingsen, Andrey V. Dolgov, Kenneth T. Frank
Software Mentions: 3
Published: almost 6 years ago

10.3389/fimmu.2021.593595

Clinical and Immunological Factors That Distinguish COVID-19 From Pandemic Influenza A(H1N1)
Cited by: 25
Author(s): José Alberto Choreño-Parra, Luis Armando Jiménez-Álvarez, Alfredo Cruz‐Lagunas, Tatiana Sofia Rodrı́guez-Reyna, Gustavo Ramírez-Martínez, Montserrat Sandoval-Vega, Diana Lizzeth Hernández-García, Eduardo M. Choreño-Parra, Yalbi I. Balderas-Martínez, Mariana Esther Martínez-Sánchez, Eduardo Márquez-García, Edda Sciutto, José Moreno-Rodríguez, José Omar Barreto-Rodríguez, Hazel Vázquez-Rojas, Gustavo Iván Centeno-Sáenz, Néstor Alvarado-Peña, Citlaltépetl Salinas-Lara, Carlos Sánchez-Garibay, David Galeana-Cadena, Gabriela Hernández, Criselda Mendoza-Milla, Andrea Domínguez, Julio Granados, Lula Mena-Hernández, Luis Ángel Pérez-Buenfil, Guillermo Domínguez-Cheritt, Carlos Cabello-Gutiérrez, César Luna-Rivero, Jorge Salas-Hernández, Patricio Santillán-Doherty, Justino Regalado, Angélica Hernández-Martínez, Lorena Orozco, Federico Ávila‐Moreno, Ethel Garcı́a-Latorre, Carmen Margarita Hernández-Cárdenas, Shabaana A. Khader, Albert Zlotnik, Joaquı́n Zúñiga
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2018.00553

Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace
Cited by: 43
Author(s): Mao Li, Hong An, Ruthie Angelovici, Clement Bagaza, Albert Batushansky, Lynn G. Clark, Viktoriya Coneva, Michael J. Donoghue, Erika J. Edwards, Diego Fajardo, Hui Fang, Margaret H. Frank, Timothy J. Gallaher, Sarah Gebken, Theresa Hill, Shelley Jansky, Baljinder Kaur, Phillip C. Klahs, Laura L. Klein, Vasu Kuraparthy, Jason P. Londo, Zoë Migicovsky, Allison J. Miller, Rebekah A. Mohn, Sean Myles, Wagner Campos Otoni, J. Chris Pires, Edmond Rieffer, Sam Schmerler, Elizabeth L. Spriggs, Christopher N. Topp, Allen Van Deynze, Kuang Zhang, Linglong Zhu, Braden M. Zink, Daniel H. Chitwood
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0223709

Behavioural risks in female dogs with minimal lifetime exposure to gonadal hormones
Cited by: 17
Author(s): Melissa J. Starling, Anne Fawcett, Bethany Wilson, James A. Serpell, Paul McGreevy
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0067623

Genotype-by-Environment Interactions for Female Mate Choice of Male Cuticular Hydrocarbons in Drosophila simulans
Cited by: 26
Author(s): Fiona C. Ingleby, John Hunt, David J. Hosken
Software Mentions: 3
Published: over 13 years ago

10.1002/ece3.6256

More widespread alien tree species do not have larger impacts on regeneration of native tree species in a tropical forest reserve
Cited by: 0
Author(s): Samson Aman Samson Kiswaga, John Richard Mbwambo, Deo D. Shirima, Ahmed S. Mndolwa, Urs Schaffner, René Eschen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0184486

Process-driven and biological characterisation and mapping of seabed habitats sensitive to trawling
Cited by: 19
Author(s): Aurélie Foveau, Sandrine Vaz, Nicolas Desroy, Vladimir E. Kostylev
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0164198

Wild Herbivore Grazing Enhances Insect Diversity over Livestock Grazing in an African Grassland System
Cited by: 25
Author(s): James S. Pryke, Francois Roets, Michael J. Samways
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0223992

To tweet or not to tweet, that is the question: A randomized trial of Twitter effects in medical education
Cited by: 10
Author(s): Lauren A. Maggio, Todd C. Leroux, Anthony R. Artino
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.4002

The effect of motorboat sound on Australian snapper Pagrus auratus inside and outside a marine reserve
Cited by: 15
Author(s): Allen F. Mensinger, Rosalyn L. Putland, Craig A. Radford
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0192843

Flogging tired horses: Who wants whipping and who would walk away if whipping horses were withheld?
Cited by: 9
Author(s): Paul D. McGreevy, Mark D. Griffiths, Frank R. Ascione, Bethany Wilson
Software Mentions: 3
Published: over 8 years ago

10.1186/s12917-019-1937-2

Epidemiology of strongyle nematode infections and first report of benzimidazole resistance in Haemonchus contortus in goats in South Darfur State, Sudan
Cited by: 8
Author(s): Khalid M. Mohammedsalih, Amna Khalafalla, Ahmed Bashar, Adam Dawoud Abakar, Abdelhakaim Hessain, Fathel-Rahman Juma, G.C. Coles, Jürgen Krücken, Georg von Samson‐Himmelstjerna
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0217071

Modeling the abundance of two Rhagoletis fly (Diptera: Tephritidae) pests in Washington State, U.S.A.
Cited by: 4
Author(s): Tewodros Wakie, Wee L. Yee, Lisa Neven, Sunil Kumar
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0025186

Cranial Growth and Variation in Edmontosaurs (Dinosauria: Hadrosauridae): Implications for Latest Cretaceous Megaherbivore Diversity in North America
Cited by: 115
Author(s): Nicolás E. Campione, David C. Evans
Software Mentions: 3
Published: about 15 years ago

10.1002/ece3.3397

Herbivory and pollen limitation at the upper elevational range limit of two forest understory plants of eastern North America
Cited by: 10
Author(s): Sébastien Rivest, Mark Vellend
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0223674

QTL mapping for aluminum tolerance in RIL population of soybean (Glycine max L.) by RAD sequencing
Cited by: 15
Author(s): Xinxin Wang, Yanbo Cheng, Ce Yang, Chunrong Yang, Yinghui Mu, Qiuju Xia, Qibin Ma
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0061082

Reproductive Capability Is Associated with Lifespan and Cause of Death in Companion Dogs
Cited by: 115
Author(s): Jessica M. Hoffman, Kate E. Creevy, Daniel E. L. Promislow
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0213733

Michigan cohorts to determine associations of maternal pre-pregnancy body mass index with pregnancy and infant gastrointestinal microbial communities: Late pregnancy and early infancy
Cited by: 46
Author(s): Kameron Y. Sugino, Nigel Paneth, Sarah S. Comstock
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-43297-1

Genome-wide association studies for 30 haematological and blood clinical-biochemical traits in Large White pigs reveal genomic regions affecting intermediate phenotypes
Cited by: 39
Author(s): Samuele Bovo, Gianluca Mazzoni, Francesca Bertolini, Giuseppina Schiavo, Giuliano Galimberti, M. Gallo, Stefania Dall’Olio
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0198874

Whole blood transcriptome analysis in amyotrophic lateral sclerosis: A biomarker study
Cited by: 35
Author(s): Wouter van Rheenen, Frank P. Diekstra, Oliver Harschnitz, Henk Jan Westeneng, Kristel R. van Eijk, Christiaan G J Saris, Ewout J N Groen, Michael A. van Es, Hylke M. Blauw, Paul W.J. van Vught, Jan H. Veldink, Leonard H van den Berg
Software Mentions: 3
Published: over 8 years ago

10.3389/fpls.2021.683043

Evidence for Glacial Refugia of the Forest Understorey Species Helleborus niger (Ranunculaceae) in the Southern as Well as in the Northern Limestone Alps
Cited by: 7
Author(s): Eliška Záveská, Philipp Kirschner, Božo Frajman, Johannes Wessely, Wolfgang Willner, Andreas Gattringer, Karl Hülber, Desanka Lazić, Christoph Dobeš
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.3807

Count data in biology—Data transformation or model reformation?
Cited by: 46
Author(s): Anne P. St‐Pierre, Violaine Shikon, David C. Schneider
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.4604

UV bullseye contrast ofHemerocallisflowers attracts hawkmoths but not swallowtail butterflies
Cited by: 11
Author(s): Shun K. Hirota, Nozomu Miki, Akiko A. Yasumoto, Tetsukazu Yahara
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2016.00150

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity
Cited by: 148
Author(s): Citlali Fonseca-García, Devin Coleman‐Derr, Etzel Garrido, Axel Visel, Susannah G. Tringe, Laila P. Partida‐Martínez
Software Mentions: 3
Published: over 10 years ago

10.1002/ece3.7482

Niche theory‐based modeling of assembly processes of viral communities in bats
Cited by: 0
Author(s): Fabiola Nieto‐Rabiela, Óscar Rico-Chávez, Gerardo Suzán, Christopher R. Stephens
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-44157-8

Vaginal Microbiota Composition Correlates Between Pap Smear Microscopy and Next Generation Sequencing and Associates to Socioeconomic Status
Cited by: 27
Author(s): Seppo Virtanen, Tiina Rantsi, Anni Virtanen, Kaisa Kervinen, Pekka Nieminen, Ilkka Kalliala, Anne Salonen
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-015-2142-8

Gene expression analysis at the onset of sex differentiation in turbot (Scophthalmus maximus)
Cited by: 35
Author(s): Diego Robledo, Laia Ribas, Rosa Cal, Laura Sánchez, Francesc Piferrer, Paulino Martı́nez, Ana Viñas
Software Mentions: 3
Published: almost 11 years ago

10.1242/dmm.048922

Modulation of serotonin in the gut-liver neural axis ameliorates the fatty and fibrotic changes in non-alcoholic fatty liver
Cited by: 12
Author(s): Masayoshi Ko, Kenya Kamimura, Takashi Owaki, Takuro Nagoya, Norihiro Sakai, Itsuo Nagayama, Yusuke Niwa, Osamu Shibata, Chiyumi Oda, Shinichi Morita, Atsushi Kimura, Ryosuke Inoue, Toru Setsu, Akira Sakamaki, Takeshi Yokoo, Shuji Terai
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.02409

Host Phylogeny Is a Major Determinant of Fagaceae-Associated Ectomycorrhizal Fungal Community Assembly at a Regional Scale
Cited by: 27
Author(s): Bian Wu, Cheng Gao, Liang Chen, François Buscot, Kezia Goldmann, Witoon Purahong, Niu‐Niu Ji, Yong-Long Wang, Pingli Lu, Xingchun Li, Liang‐Dong Guo
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2017.01313

Spatial and Temporal Microbial Patterns in a Tropical Macrotidal Estuary Subject to Urbanization
Cited by: 30
Author(s): Mirjam Kaestli, Anna J. Skillington, Karen Kennedy, M. Majid, David Williams, Keith A. McGuinness, Niels C. Munksgaard, Karen S. Gibb
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0072611

Birds Shed RNA-Viruses According to the Pareto Principle
Cited by: 19
Author(s): Mark D. Jankowski, Christopher J. Williams, Jeanne M. Fair, Jennifer C. Owen
Software Mentions: 3
Published: about 13 years ago

10.1371/journal.pone.0236471

Eco-evolutionary perspectives on emergence, dispersion and dissolution of historical Dutch commons
Cited by: 5
Author(s): Anders Forsman, Tine De Moor, René van Weeren, Giangiacomo Bravo, Amineh Ghorbani, Molood Ale Ebrahim Dehkordi, Mike Farjam
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2019.00481

Abiotic and Landscape Factors Constrain Restoration Outcomes Across Spatial Scales of a Widespread Invasive Plant
Cited by: 20
Author(s): Christine B. Rohal, Chad R. Cranney, Karin M. Kettenring
Software Mentions: 3
Published: over 7 years ago

10.1242/dev.192955

LAMA: automated image analysis for the developmental phenotyping of mouse embryos
Cited by: 7
Author(s): Neil R. Horner, Shanmugasundaram Venkataraman, Chris Armit, Ramón Casero, James M. Brown, Michael D. Wong, Matthijs C. van Eede, R. Mark Henkelman, Sara Johnson, Lydia Teboul, Sara Wells, Steve Brown, Henrik Westerberg, Ann‐Marie Mallon
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.03226

Antarctic Krill Are Reservoirs for Distinct Southern Ocean Microbial Communities
Cited by: 10
Author(s): Laurence J. Clarke, Léonie Suter, Robert A. King, Andrew Bissett, Bruce E. Deagle
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0256464

Risk factors for treatment failure in women with uncomplicated lower urinary tract infection
Cited by: 2
Author(s): Romain Martischang, Maciek Godycki-Ćwirko, Anna Kowalczyk, Katarzyna Kosiek, ‪Adi Turjeman‬‏, Tanya Babich, Shachaf Shiber, Leonard Leibovici, Elodie von Dach, Stéphan Juergen Harbarth, Angela Huttner
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0186512

Endemic chronic wasting disease causes mule deer population decline in Wyoming
Cited by: 75
Author(s): Melia T. DeVivo, David R. Edmunds, Matthew J. Kauffman, Brant A. Schumaker, Justin Binfet, Terry J. Kreeger, Bryan J. Richards, Hermann Schätzl, Todd E. Cornish
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0094667

Artisanal Green Turtle, Chelonia mydas, Fishery of Caribbean Nicaragua: I. Catch Rates and Trends, 1991–2011
Cited by: 21
Author(s): Cynthia J. Lagueux, Cathi L. Campbell, Samantha Strindberg
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pbio.1002576

Prefrontal Markers and Cognitive Performance Are Dissociated during Progressive Dopamine Lesion
Cited by: 8
Author(s): Charles R.E. Wilson, Julien Vezoli, Frederic M. Stoll, Maïlys C. M. Faraut, Vincent Leviel, Kenneth Knoblauch, Emmanuel Procyk
Software Mentions: 3
Published: almost 10 years ago

10.3389/fmicb.2014.00219

Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Cited by: 968
Author(s): David Berry, Stefanie Widder
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pbio.1002359

Near-Stasis in the Long-Term Diversification of Mesozoic Tetrapods
Cited by: 52
Author(s): Roger B. J. Benson, Richard J. Butler, John Alroy, Philip D. Mannion, Matthew T. Carrano, Graeme T. Lloyd
Software Mentions: 3
Published: over 10 years ago

10.3390/plants9111553

Extreme Drought Affects Visitation and Seed Set in a Plant Species in the Central Chilean Andes Heavily Dependent on Hummingbird Pollination
Cited by: 10
Author(s): Mary T. K. Arroyo, Valeria Robles, Ítalo Tamburrino, Jaime Martínez‐Harms, René Garreaud, Paola Jara‐Arancio, Patricio Pliscoff, Ana Copier, J. González Arenas, Joaquín Keymer, Kiara Castro
Software Mentions: 3
Published: almost 6 years ago

10.2196/24305

Machine-Learning Monitoring System for Predicting Mortality Among Patients With Noncancer End-Stage Liver Disease: Retrospective Study
Cited by: 9
Author(s): Yu Lin, Ray Jade Chen, Jui Hsiang Tang, Cheng Yu, Jenny L Wu, Li Chuan Chen, Shy Shin Chang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2021.657813

Latitudinal and Longitudinal Trends of Seed Traits Indicate Adaptive Strategies of an Invasive Plant
Cited by: 11
Author(s): Lifeng Zhou, Hu Yu, Kaiwen Yang, Li Chen, Wei Yin, Jianqing Ding
Software Mentions: 3
Published: over 5 years ago

10.1186/s13007-020-00659-5

Non-destructive identification of single hard seed via multispectral imaging analysis in six legume species
Cited by: 16
Author(s): Xiao Wen Hu, Lingjie Yang, Zuxin Zhang
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1008601

Estimating and interpreting secondary attack risk: Binomial considered biased
Cited by: 10
Author(s): Yushuf Sharker, Eben Kenah
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008504

Chemical graph generators
Cited by: 4
Author(s): Mehmet Aziz Yirik, Christoph Steinbeck
Software Mentions: 3
Published: over 5 years ago

10.1186/s12962-020-00251-7

Increasing the information provided by probabilistic sensitivity analysis: The relative density plot
Cited by: 1
Author(s): Joost W Geenen, Rick A Vreman, Cornelis Boersma, Olaf H. Klungel, Anke M. Hövels, Renske M.T. ten Ham
Software Mentions: 3
Published: almost 6 years ago

10.3897/phytokeys.100.21828

A taxonomic revision of Curarea Barneby & Krukoff (Menispermaceae)
Cited by: 1
Author(s): Rosa Del C. Ortiz
Software Mentions: 3
Published: over 8 years ago

10.1098/rstb.2015.0227

Towards a morphological metric of assemblage dynamics in the fossil record: a test case using planktonic foraminifera
Cited by: 21
Author(s): Allison Y. Hsiang, Leanne E. Elder, Pincelli M. Hull
Software Mentions: 3
Published: over 10 years ago

10.1098/rstb.2020.0083

Social status and ejaculate composition in the house mouse
Cited by: 8
Author(s): Helen Bayram, Catarina Franco, Philip Brownridge, Amy J. Claydon, Natalie I Koch, Jane L. Hurst, Robert J. Beynon, Paula Stockley
Software Mentions: 3
Published: almost 6 years ago

10.1093/gbe/evu244

Multispecies Coalescent Analysis of the Early Diversification of Neotropical Primates: Phylogenetic Inference under Strong Gene Trees/Species Tree Conflict
Cited by: 15
Author(s): Carlos G. Schrago, Albert N. Menezes, Carolina Furtado, Cibele Rodrigues Bonvicino, Héctor N. Seuánez
Software Mentions: 3
Published: almost 12 years ago

10.1186/s13059-015-0637-x

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
Cited by: 159
Author(s): Xochitl C. Morgan, Boyko Kabakchiev, Levi Waldron, Andrea D. Tyler, Timothy L. Tickle, Raquel Milgrom, Joanne M. Stempak, Dirk Gevers, Ramnik J. Xavier, Mark S. Silverberg, Curtis Huttenhower
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2105-7-74

Spectral embedding finds meaningful (relevant) structure in image and microarray data
Cited by: 19
Author(s): Brandon W. Higgs, Juliane Weller, Jeffrey L. Solka
Software Mentions: 3
Published: over 20 years ago

10.7717/peerj.8860

Interaction effects of aging, word frequency, and predictability on saccade length in Chinese reading
Cited by: 3
Author(s): Zhifang Liu, Wen Tong, Yongqiang Su
Software Mentions: 3
Published: over 6 years ago

10.1093/gbe/evu267

Genome-Wide Patterns of Genetic Polymorphism and Signatures of Selection in Plasmodium vivax
Cited by: 33
Author(s): Omar E. Cornejo, David Fisher, Ananías A. Escalante
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12885-016-2520-x

Pseudo-HE images derived from CARS/TPEF/SHG multimodal imaging in combination with Raman-spectroscopy as a pathological screening tool
Cited by: 61
Author(s): Thomas Bocklitz, Firas Subhi Salah, Nadine Vogler, Sandro Heuke, Olga Chernavskaia, Carsten Schmidt, Maximilian J. Waldner, Florian R. Greten, Rolf Bräuer, Michael Schmitt, Andreas Stallmach, Iver Petersen, Jürgen Popp
Software Mentions: 3
Published: about 10 years ago

10.7717/peerj.11436

Mahalanobis distances for ecological niche modelling and outlier detection: implications of sample size, error, and bias for selecting and parameterising a multivariate location and scatter method
Cited by: 10
Author(s): Thomas R. Etherington
Software Mentions: 3
Published: over 5 years ago

10.1007/s10709-015-9875-9

Dominance from the perspective of gene–gene and gene–chemical interactions
Cited by: 2
Author(s): Arkadiusz Gładki, Piotr Zielenkiewicz, Szymon Kaczanowski
Software Mentions: 3
Published: almost 11 years ago

10.3389/fmicb.2020.00659

Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine
Cited by: 43
Author(s): Marina Martínez-Álvaro, Marc Auffret, Robert D. Stewart, Richard J. Dewhurst, Carol-Anne Duthie, J. A. Rooke, Robert John Wallace, Barbara Shih, Tom C. Freeman, Mick Watson, R. Roehe
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0185591

Modelling patterns of pollinator species richness and diversity using satellite image texture
Cited by: 13
Author(s): Sylvia Hofmann, Jeroen Everaars, Oliver Schweiger, Mark Frenzel, Lutz Bannehr, Anna F. Cord
Software Mentions: 3
Published: about 9 years ago

10.1093/conphys/cox035

Reflex impairment and physiology as predictors of delayed mortality in recreationally caught yellowtail snapper (Ocyurus chrysurus)
Cited by: 8
Author(s): Francesca C. Forrestal, M. Danielle McDonald, Georgianna Burress, David J. Die
Software Mentions: 3
Published: almost 10 years ago

10.3389/fphys.2019.00044

Validity and Reliability of a Novel Integrative Motor Performance Testing Course for Seniors: The “Agility Challenge for the Elderly (ACE)”
Cited by: 4
Author(s): Eric Lichtenstein, Oliver Faude, Aline Zubler, Ralf Roth, Lukas Zahner, Roland Rößler, Timo Hinrichs, Jaap H. van Dieën, Lars Donath
Software Mentions: 3
Published: over 7 years ago

10.1007/s10764-018-0059-1

The Effects of Climate Seasonality on Behavior and Sleeping Site Choice in Sahamalaza Sportive Lemurs, Lepilemur sahamalaza
Cited by: 17
Author(s): Isabella Mandl, Marc W. Holderied, Christoph Schwitzer
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pntd.0007562

Distinguishing patients with laboratory-confirmed chikungunya from dengue and other acute febrile illnesses, Puerto Rico, 2012–2015
Cited by: 12
Author(s): Luisa I. Alvarado, Olga Lorenzi, Brenda Torres-Velásquez, Tyler M. Sharp, Luzeida Vargas, Jorge L. Muñoz‐Jordán, Elizabeth Hunsperger, Janice Pérez-Padilla, Aidsa Rivera, Gladys E. González-Zeno, Renee L. Galloway, Mindy G. Elrod, Demetrius L. Mathis, M. Steven Oberste, W. Allan Nix, Elizabeth Henderson, Jennifer H. McQuiston, Joseph Singleton, Cecilia Y. Kato, Carlos García-Gubern, William Santiago-Rivera, Robert Muns-Sosa, Juan D. Ortiz-Rivera, Gerson Jiménez, Vanessa Rivera‐Amill, Doris A. Andújar-Pérez, Kalanthe Horiuchi, Kay M. Tomashek
Software Mentions: 3
Published: about 7 years ago

10.7717/peerj.5428

The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly
Cited by: 74
Author(s): Matthew D. MacManes
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.9792

Life history and habitat do not mediate temporal changes in body size due to climate warming in rodents
Cited by: 4
Author(s): Aluwani Nengovhela, Christiane Denys, Peter J. Taylor
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.3511

The identification of Oligo-Miocene mammalian palaeocommunities from the Riversleigh World Heritage Area, Australia and an appraisal of palaeoecological techniques
Cited by: 8
Author(s): Troy Myers, Karen H. Black, Michael Archer, Suzanne J. Hand
Software Mentions: 3
Published: over 9 years ago

10.1093/jhered/esaa027

Extremely Widespread Parthenogenesis and a Trade-Off Between Alternative Forms of Reproduction in Mayflies (Ephemeroptera)
Cited by: 18
Author(s): Maud Liégeois, Michel Sartori, Tanja Schwander
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pntd.0002601

Standardising Visual Control Devices for Tsetse Flies: Central and West African Species Glossina palpalis palpalis
Cited by: 14
Author(s): Dramane Kaba, Tusevo Zacarie, Alexis Makumyaviri M’Pondi, Flobert Njiokou, Henriette Bosson-Vanga, Thomas Kröber, Andrew McMullin, Steve Mihok, Patrick M. Guérin
Software Mentions: 3
Published: over 12 years ago

10.1186/s13073-016-0368-y

Potential contribution of the uterine microbiome in the development of endometrial cancer
Cited by: 211
Author(s): Marina Walther-Antonio, Jun Chen, Francesco Multinu, Alexis N. Hokenstad, Tammy J. Distad, Elizabeth Cheek, Gary L. Keeney, Douglas J. Creedon, Heidi Nelson, Andrea Mariani, Nicholas Chia
Software Mentions: 3
Published: almost 10 years ago

10.3390/ani10112040

Great Himalayan Leaf-Nosed Bats Produce Different Territorial Calls to Respond to Sympatric Species and Non-Living Objects
Cited by: 0
Author(s): Hexuan Qin, Lei Feng, Xiaohui Zhao, Congnan Sun, Jiang Feng, Tinglei Jiang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fphys.2019.00098

Transgenerational Developmental Effects of Immune Priming in the Red Flour Beetle Tribolium castaneum
Cited by: 19
Author(s): Nora Schulz, Marie P. Sell, Kevin Ferro, Nico Kleinhölting, Joachim Kurtz
Software Mentions: 3
Published: over 7 years ago

Projects: cran: MASS

Science Score: 100/100

Bonuses:

Papers Mentioning MASS 2,353