cran: Julia | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-61257-y

Signals of anticipation of reward and of mean reward rates in the human brain
Cited by: 6
Author(s): Roberto Viviani, Lisa Dommes, Julia Bosch, Michael Steffens, Anna Paul, Katharina Schneider, Julia Stingl, Petra Beschoner
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-018-2510-x

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow
Cited by: 54
Author(s): Jonathan Ozik, Nicholson Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy Heiland, Gary An, Paul Macklin
Software Mentions: 3
Published: almost 6 years ago

10.15252/msb.20198982

Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome
Cited by: 98
Author(s): Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike Kathrin Aurich, Ronan M. T. Fleming
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-86087-4

Microdroplet-based one-step RT-PCR for ultrahigh throughput single-cell multiplex gene expression analysis and rare cell detection
Cited by: 13
Author(s): Jennifer Ma, Gary Tran, Alwin M. D. Wan, Elton T. Young, Eugenia Kumacheva, Norman N. Iscove, Peter W. Zandstra
Software Mentions: 3
Published: over 3 years ago

10.1186/s13195-018-0410-y

Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels
Cited by: 14
Author(s): Taylor J. Maxwell, Chris Corcoran, Jorge L. Del‐Aguila, John Budde, Yuetiva Deming, Carlos Cruchaga, Alison Goate, John S. K. Kauwe
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0187373

Reduced order modeling and analysis of the human complement system
Cited by: 8
Author(s): Adithya Sagar, Wei Dai, Mason Minot, Rachel LeCover, Jeffrey D. Varner
Software Mentions: 3
Published: about 7 years ago

10.1523/ENEURO.0204-17.2017

Mapping Language Networks Using the Structural and Dynamic Brain Connectomes
Cited by: 44
Author(s): John Del Gaizo, Julius Fridriksson, Grigori Yourganov, Argye E. Hillis, Gregory Hickok, Bratislav Mišić, Chris Rorden, Leonardo Bonilha
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-021-04265-7

A novel nonlinear dimension reduction approach to infer population structure for low-coverage sequencing data
Cited by: 1
Author(s): Miao Zhang, Yiwen Liu, Hua Zhou, Joseph C. Watkins, Jin Zhou
Software Mentions: 2
Published: over 3 years ago

10.1186/s12874-021-01237-6

Deep generative models in DataSHIELD
Cited by: 6
Author(s): Stefan Lenz, Moritz Hess, Harald Binder
Software Mentions: 2
Published: over 3 years ago

10.1186/s12918-016-0380-2

JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language
Cited by: 9
Author(s): David M. Bassen, Michael Vilkhovoy, Mason Minot, Jonathan T. Butcher, Jeffrey D. Varner
Software Mentions: 2
Published: almost 8 years ago

10.1242/bio.058512

Integrated analysis of cell shape and movement in moving frame
Cited by: 3
Author(s): Yusri Dwi Heryanto, Chin-Yi Cheng, Yutaka Uchida, Kazushi Mimura, Masaru Ishii, Ryo Yamada
Software Mentions: 2
Published: over 3 years ago

10.1002/mrm.28563

Phase unwrapping with a rapid opensource minimum spanning tree algorithm (ROMEO)
Cited by: 33
Author(s): Barbara Dymerska, Korbinian Eckstein, Beáta Bachratá, Bernard Siow, S. Trattnig, Karin Shmueli, Simon Daniel Robinson
Software Mentions: 2
Published: about 4 years ago

10.1093/molbev/msz243

Evolutionary Analyses of Base-Pairing Interactions in DNA and RNA Secondary Structures
Cited by: 6
Author(s): Michael Golden, Ben Murrell, Darren P. Martin, Oliver G. Pybus, Jotun Hein
Software Mentions: 2
Published: about 5 years ago

10.3390/v13091735

Intracellular Life Cycle Kinetics of SARS-CoV-2 Predicted Using Mathematical Modelling
Cited by: 11
Author(s): Dmitry Grebennikov, Ekaterina Kholodareva, Igor Sazonov, Antonina Karsonova, Andreas Meyerhans, Gennady Bocharov
Software Mentions: 2
Published: about 3 years ago

10.3390/plants9101358

Coupled Gas-Exchange Model for C4 Leaves Comparing Stomatal Conductance Models
Cited by: 5
Author(s): Kyungdahm Yun, Dennis Timlin, Sung Hyun Kim
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1008997

Robust switches in thalamic network activity require a timescale separation between sodium and T-type calcium channel activations
Cited by: 3
Author(s): Kathleen Jacquerie, Guillaume Drion
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008863

Fixation patterns in simple choice reflect optimal information sampling
Cited by: 48
Author(s): Frederick Callaway, Antonio Rangel, Thomas L. Griffiths
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1006799

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models
Cited by: 41
Author(s): Tyler Funnell, Allen W. Zhang, Diljot Grewal, Steven McKinney, Ali Bashashati, Yi Kan Wang, Sohrab P. Shah
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1008054

Estimating Transfer Entropy in Continuous Time Between Neural Spike Trains or Other Event-Based Data
Cited by: 23
Author(s): David Shorten, Richard E. Spinney, Joseph T. Lizier
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1005430

Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI)
Cited by: 52
Author(s): Yogi A. Patel, Ansel George, Alan D. Dorval, John A. White, David J. Christini, Robert J. Butera
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1008314

The synergy of damage repair and retention promotes rejuvenation and prolongs healthy lifespans in cell lineages
Cited by: 6
Author(s): Barbara Schnitzer, Johannes Borgqvist, Marija Cvijović
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1007096

Seasonal influenza: Modelling approaches to capture immunity propagation
Cited by: 34
Author(s): Edward M. Hill, Stavros Petrou, Simon de Lusignan, Ivelina Yonova, Matthew James Keeling
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1008837

Control of mRNA translation by dynamic ribosome modification
Cited by: 12
Author(s): Lucia Grenga, Richard Little, Govind Chandra, Stuart Daniel Woodcock, Gerhard Saalbach, Richard J. Morris, Jacob G. Malone
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pgen.1005896

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
Cited by: 305
Author(s): Claudia Solís-Lemus, Cécile Ané
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0241394

Efficient simulation of non-Markovian dynamics on complex networks
Cited by: 1
Author(s): Gerrit Großmann, Luca Bortolussi, Verena Wolf
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0242201

Simulating bout-and-pause patterns with reinforcement learning
Cited by: 5
Author(s): Kota Yamada, Atsunori Kanemura
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0252801

Production planning of a furniture manufacturing company with random demand and production capacity using stochastic programming
Cited by: 1
Author(s): José Emmanuel Gómez-Rocha, Eva Selene Hernández Gress, Héctor Rivera-Gómez
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0238979

Go big or go home: A model-based assessment of general strategies to slow the spread of forest pests via infested firewood
Cited by: 6
Author(s): P Jentsch, Chris T. Bauch, Denys Yemshanov, Madhur Anand
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0148134

Predicting Flow Reversals in a Computational Fluid Dynamics Simulated Thermosyphon Using Data Assimilation
Cited by: 3
Author(s): Andrew J. Reagan, Yves Dubief, Peter Sheridan Dodds, Christopher M. Danforth
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0230821

In-Vitro MPI-guided IVOCT catheter tracking in real time for motion artifact compensation
Cited by: 4
Author(s): Florian Griese, Sarah Latus, Matthias Schlüter, Matthias Graeser, Matthias Lutz, Alexander Schlaefer, Tobias Knopp
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0238118

Prescriptive analytics for reducing 30-day hospital readmissions after general surgery
Cited by: 4
Author(s): Dimitris Bertsimas, Michael Lingzhi Li, Ioannis Ch. Paschalidis, Taiyao Wang
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0248783

Identifying optimal COVID-19 testing strategies for schools and businesses: Balancing testing frequency, individual test technology, and cost
Cited by: 22
Author(s): Gregory Lyng, Natalie E. Sheils, Caleb J. Kennedy, Daniel O. Griffin, Ethan M. Berke
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0240267

Spiking neural state machine for gait frequency entrainment in a flexible modular robot
Cited by: 7
Author(s): Alex Spaeth, Maryam Tebyani, David Haussler, Mircea Teodorescu
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0238327

FLIMJ: An open-source ImageJ toolkit for fluorescence lifetime image data analysis
Cited by: 19
Author(s): Dasong Gao, Paul R. Barber, Jenu V. Chacko, Abdul Kader Sagar, Curtis Rueden, Aivar R Grislis, Mark Hiner, Kevin W. Eliceiri
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers13092036

Dietary Modulation of Bacteriophages as an Additional Player in Inflammation and Cancer
Cited by: 4
Author(s): Luigi Marongiu, Markus Burkard, Sascha Venturelli, Heike Allgayer
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers13184609

Genome Scale Modeling to Study the Metabolic Competition between Cells in the Tumor Microenvironment
Cited by: 12
Author(s): Itziar Frades, Carles Foguet, Marta Cascante, Marcos J. Araúzo-Bravo
Software Mentions: 2
Published: about 3 years ago

10.1093/database/baz124

Machine learning approach to literature mining for the genetics of complex diseases
Cited by: 1
Author(s): Jessica Schuster, Michael Superdock, Anthony Agudelo, Paul Stey, Jamés F. Padbury, Indra Neil Sarkar, Alper Uzun
Software Mentions: 2
Published: almost 6 years ago

10.3390/e23070815

Extended Variational Message Passing for Automated Approximate Bayesian Inference
Cited by: 5
Author(s): Semih Akbayrak, Ivan Bocharov, Bert de Vries
Software Mentions: 2
Published: over 3 years ago

10.3390/e22010013

Relationship between the Transport Coefficients of Polar Substances and Entropy
Cited by: 2
Author(s): И П Анашкин, S. G. D′yakonov, German Dyakonov
Software Mentions: 2
Published: almost 5 years ago

10.3390/e23070796

Social Influence Maximization in Hypergraphs
Cited by: 11
Author(s): Alessia Antelmi, Gennaro Cordasco, Carmine Spagnuolo, Przemysław Szufel
Software Mentions: 2
Published: over 3 years ago

10.1111/1462-2920.15666

Seasonal environmental variability drives microdiversity within a coastal Synechococcus population
Cited by: 4
Author(s): Kristen R. Hunter‐Cevera, Bryan R. Hamilton, Michael G. Neubert, Heidi M. Sosik
Software Mentions: 2
Published: over 3 years ago

10.1016/j.epidem.2021.100476

Modelling SARS-CoV-2 transmission in a UK university setting
Cited by: 16
Author(s): Edward M. Hill, Benjamin D. Atkins, Matthew James Keeling, Michael J. Tildesley, Louise Dyson
Software Mentions: 2
Published: about 3 years ago

10.1111/eva.12717

Genomic clustering of fitness-affecting mutations favors the evolution of chromosomal instability
Cited by: 3
Author(s): Yevgeniy Raynes, Daniel Weinreich
Software Mentions: 2
Published: about 6 years ago

10.3389/frai.2020.00045

Opinion Formation on the Internet: The Influence of Personality, Network Structure, and Content on Sharing Messages Online
Cited by: 9
Author(s): Laura Burbach, Patrick Halbach, Martina Ziefle, André Calero Valdez
Software Mentions: 2
Published: over 4 years ago

10.3389/fbioe.2020.553904

On the Logical Design of a Prototypical Data Lake System for Biological Resources
Cited by: 5
Author(s): Haoyang Che, Yucong Duan
Software Mentions: 2
Published: about 4 years ago

10.3389/fninf.2019.00039

Unsupervised Detection of Cell-Assembly Sequences by Similarity-Based Clustering
Cited by: 7
Author(s): Watanabe Keita, Tatsuya Haga, Masami Tatsuno, David R. Euston, Tomoki Fukai
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2020.601402

Prefrontal Asymmetry BCI Neurofeedback Datasets
Cited by: 6
Author(s): Fred Charles, Caio De Castro Martins, Marc Cavazza
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphys.2021.667828

Deep Learning Approaches to Surrogates for Solving the Diffusion Equation for Mechanistic Real-World Simulations
Cited by: 1
Author(s): J. Quetzalcóatl Toledo-Marín, Geoffrey Fox, James P. Sluka, James A. Glazier
Software Mentions: 2
Published: over 3 years ago

10.1534/g3.120.401300

Phantom Epistasis in Genomic Selection: On the Predictive Ability of Epistatic Models
Cited by: 23
Author(s): Matías F. Schrauf, Johannes W. R. Martini, Henner Simianer, Gustavo de los Campos, Rodolfo Juan Carlos Cantet, Jan A. Freudenthal, Arthur Korte, S. Munilla
Software Mentions: 2
Published: about 4 years ago

10.1093/gbe/evaa086

The Simons Genome Diversity Project: A Global Analysis of Mobile Element Diversity
Cited by: 20
Author(s): W. Scott Watkins, Julie E. Feusier, Jainy Thomas, Clément Goubert, Swapon Mallick, Lynn B. Jorde
Software Mentions: 2
Published: over 4 years ago

10.1186/s13073-021-00882-2

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies
Cited by: 17
Author(s): Billy T. Lau, Dmitri S. Pavlichin, Anna C Hooker, Alison Almeda, Giwon Shin, Jiamin Chen, Malaya K. Sahoo, Chun Huang, Benjamin A. Pinsky, Ho‐Joon Lee, Hanlee P. Ji
Software Mentions: 2
Published: over 3 years ago

10.1016/j.gpb.2017.07.003

Deep Learning and Its Applications in Biomedicine
Cited by: 388
Author(s): Chensi Cao, Feng Liu, Hai Tan, Deshou Song, Wenjie Shu, Weizhong Li, Yiming Zhou, Xiaochen Bo, Zhi Xie
Software Mentions: 2
Published: almost 7 years ago

10.1186/2047-217X-3-3

A data repository and analysis framework for spontaneous neural activity recordings in developing retina
Cited by: 32
Author(s): Stephen J. Eglen, Michael Weeks, Mark Jessop, Jennifer Simonotto, Thomas W. Jackson, Evelyne Sernagor
Software Mentions: 2
Published: over 10 years ago

10.1016/j.heares.2020.108068

Effects of age on electrophysiological measures of cochlear synaptopathy in humans
Cited by: 13
Author(s): Samuele Carcagno, Christopher J. Plack
Software Mentions: 2
Published: about 4 years ago

10.1098/rspa.2016.0062

Homogenized boundary conditions and resonance effects in Faraday cages
Cited by: 20
Author(s): David P. Hewett, Ian Hewitt
Software Mentions: 2
Published: over 8 years ago

10.1073/pnas.2024287118

A modular computational framework for medical digital twins
Cited by: 28
Author(s): Joseph Masison, Jonathan D. Beezley, Yefeng Mei, Henrique Al Ribeiro, Ádám Knapp, Luis Sordo Vieira, Bandita Adhikari, Yogesh Scindia, Michael Grauer, Brian Helba, W. J. Schroeder, Borna Mehrad, Reinhard Laubenbacher
Software Mentions: 2
Published: over 3 years ago

10.1007/s42452-021-04610-8

Educating the energy informatics specialist: opportunities and challenges in light of research and industrial trends
Cited by: 5
Author(s): Chiara Bordin, Sweta Mishra, Abdolreza Safari, Frank Eliassen
Software Mentions: 2
Published: over 3 years ago

10.1038/sdata.2018.187

Mimi-PAGE, an open-source implementation of the PAGE09 integrated assessment model
Cited by: 22
Author(s): Frances C. Moore, James Rising, Niklas Lollo, Cecilia Springer, Váleri N. Vásquez, Alex Dolginow, Chris Hope, David Anthoff
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-29318-5

Anti-angiogenic drug scheduling optimisation with application to colorectal cancer
Cited by: 6
Author(s): Marc Sturrock, Ian S. Miller, Guiyeom Kang, N Hannis Arba'ie, Alice C. O’Farrell, Ana Barat, Gemma Marston, P. Louise Coletta, Annette T. Byrne, Jochen H M Prehn
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-49114-z

VIVA (VIsualization of VAriants): A VCF File Visualization Tool
Cited by: 7
Author(s): George A. Tollefson, Jessica Schuster, Fernando Gelin, Anthony Agudelo, Ashok Ragavendran, Iván Restrepo, Paul Stey, Jamés F. Padbury, Alper Uzun
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-63545-z

Conceptual framework and uncertainty analysis for large-scale, species-agnostic modelling of landscape connectivity across Alberta, Canada
Cited by: 19
Author(s): Ronan Marrec, Hossam E. Abdel Moniem, Majid Iravani, Branko Hricko, Jahan Kariyeva, Helene H. Wagner
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-93161-4

Graph hierarchy: a novel framework to analyse hierarchical structures in complex networks
Cited by: 5
Author(s): Giannis Moutsinas, Choudhry Shuaib, Weisi Guo, Stephen A. Jarvis
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-95568-5

A simple and fast spectroscopy-based technique for Covid-19 diagnosis
Cited by: 29
Author(s): Driss Lahlou Kitane, Salma LOUKMAN, Nabila Marchoudi, A. Fernandez-Galiana, Fatima Zahra El Ansari, Farah Jouali, Jamal Badir, Jean‐Luc Gala, Dimitris Bertsimas, Nawfal Azami, Omar Lakbita, Omar Moudam, Rachid Benhida, Jamal Fekkak
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-97000-4

Age and sex effects in physical fitness components of 108,295 third graders including 515 primary schools and 9 cohorts
Cited by: 8
Author(s): Thea Fühner, Urs Granacher, Kathleen Golle, Reinhold Kliegl
Software Mentions: 2
Published: about 3 years ago

10.3390/s21124187

Artificial Breath Classification Using XGBoost Algorithm for Diabetes Detection
Cited by: 24
Author(s): Anna Paleczek, Dominik Grochala, Artur Rydosz
Software Mentions: 2
Published: over 3 years ago

10.1186/s40064-016-2888-8

A preliminary review of influential works in data-driven discovery
Cited by: 6
Author(s): Mark A. Stalzer, Chris Mentzel
Software Mentions: 2
Published: over 8 years ago

10.1016/j.str.2017.01.008

Predicting Protein Dynamics and Allostery Using Multi-Protein Atomic Distance Constraints
Cited by: 40
Author(s): Joe G Greener, Ioannis Filippis, Michael J.E. Sternberg
Software Mentions: 2
Published: over 7 years ago

10.3390/toxics8020030

Theoretical Modeling of Oral Glucose Tolerance Tests Guides the Interpretation of the Impact of Perinatal Cadmium Exposure on the Offspring’s Glucose Homeostasis
Cited by: 4
Author(s): Alexandre Rocca, Éric Fanchon, Jean‐Marc Moulis
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.57915

An analog to digital converter controls bistable transfer competence development of a widespread bacterial integrative and conjugative element
Cited by: 7
Author(s): Nicolas Carraro, Xavier Richard, Sandra Sulser, François Delavat, Christian Mazza, van der Peter Meer
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.42992

Reward prediction error does not explain movement selectivity in DMS-projecting dopamine neurons
Cited by: 37
Author(s): Rachel S. Lee, Marcelo G. Mattar, Nathan F. Parker, Ilana B. Witten, Nathaniel D. Daw
Software Mentions: 2
Published: over 5 years ago

10.2196/19615

Global Research on Coronaviruses: An R Package
Cited by: 11
Author(s): Thierry Warin
Software Mentions: 2
Published: over 4 years ago

10.1016/j.isci.2018.10.002

Interdisciplinary Case Study: How Mathematicians and Biologists Found Order in Cellular Noise
Cited by: 0
Author(s): Chris Rackauckas, Thomas F. Schilling, Qing Nie
Software Mentions: 2
Published: about 6 years ago

10.3389/fnhum.2021.631782

Absence of Nonlinear Coupling Between Electric Vestibular Stimulation and Evoked Forces During Standing Balance
Cited by: 1
Author(s): Kelci B. Hannan, Makina K. Todd, Nicole Pearson, Patrick A. Forbes, Christopher J. Dakin
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0251242

An examination of school reopening strategies during the SARS-CoV-2 pandemic
Cited by: 16
Author(s): Alfonso Landeros, Xiang Ji, Kenneth Lange, Timothy C. Stutz, Jason Xu, Mary E. Sehl, Janet S. Sinsheimer
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0224307

Clustering via hypergraph modularity
Cited by: 39
Author(s): Bogumił Kamiński, Valérie Poulin, Paweł Prałat, Przemysław Szufel, François Théberge
Software Mentions: 1
Published: about 5 years ago

10.1186/s12880-015-0062-3

ROCKETSHIP: a flexible and modular software tool for the planning, processing and analysis of dynamic MRI studies
Cited by: 58
Author(s): Samuel Barnes, Thomas S.C. Ng, Naomi Santa-Maria, Axel Montagne, Berislav V. Zlokovič, Russell E. Jacobs
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0195952

A diffusion-matched principal component analysis (DM-PCA) based two-channel denoising procedure for high-resolution diffusion-weighted MRI
Cited by: 13
Author(s): Nan‐kuei Chen, Hing‐Chiu Chang, Ali Bilgin, Adam Bernstein, Theodore P. Trouard
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0241549

Projecting influenza vaccine effectiveness: A simulation study
Cited by: 1
Author(s): Thomas N. Vilches, Affan Shoukat, Cláudia Pio Ferreira, Seyed M. Moghadas
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1006125

Switchable slow cellular conductances determine robustness and tunability of network states
Cited by: 13
Author(s): Guillaume Drion, Julie Dethier, Alessio Franci, Rodolphe Sepulchre
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1005251

Population Heterogeneity in the Epithelial to Mesenchymal Transition Is Controlled by NFAT and Phosphorylated Sp1
Cited by: 23
Author(s): Russell A. Gould, David M. Bassen, Anirikh Chakrabarti, Jeffrey D. Varner, Jonathan T. Butcher
Software Mentions: 1
Published: almost 8 years ago

10.3389/fnins.2021.628778

Rapid and Low Cost Manufacturing of Cuff Electrodes
Cited by: 4
Author(s): Matthew T. Flavin, Marek A. Paul, Alexander S. Lim, Senan Abdul‐Hamed, Charles Lissandrello, Robert Ajemian, Samuel J. Lin, Jongyoon Han
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnins.2021.694402

Probabilistic Spike Propagation for Efficient Hardware Implementation of Spiking Neural Networks
Cited by: 1
Author(s): Abinand Nallathambi, Sanchari Sen, Anand Raghunathan, Nitin Chandrachoodan
Software Mentions: 1
Published: over 3 years ago

10.1101/2020.08.05.20169086

An examination of school reopening strategies during the SARS-CoV-2 pandemic
Cited by: 6
Author(s): Alfonso Landeros, Xiang Ji, Kenneth Lange, Timothy C. Stutz, Jason Xu, Mary E. Sehl, Janet S. Sinsheimer
Software Mentions: 1
Published: over 4 years ago

10.1186/s12916-019-1488-1

Comparison of brain connectomes by MRI and genomics and its implication in Alzheimer’s disease
Cited by: 6
Author(s): Young Woon Woo, Panos Roussos, Vahram Haroutunian, Pavel Katsel, Samuel E. Gandy, Eric E. Schadt, Jun Zhu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphys.2019.00883

Theoretical Modeling and Experimental Detection of the Extracellular Phasic Impedance Modulation in Rabbit Hearts
Cited by: 2
Author(s): Shahriar Iravanian, Conner Herndon, Jonathan J. Langberg, Flavio H. Fenton
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1006823

Maximum entropy and population heterogeneity in continuous cell cultures
Cited by: 17
Author(s): Jorge Fernández-de-Cossio-Díaz, Roberto Mulet
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2020.567383

Identification of Drug-Induced Multichannel Block and Proarrhythmic Risk in Humans Using Continuous T Vector Velocity Effect Profiles Derived From Surface Electrocardiograms
Cited by: 2
Author(s): W. Bystricky, Christoph Maier, Gary A. Gintant, Dennis Bergau, David Carter
Software Mentions: 1
Published: about 4 years ago

10.3389/fpsyg.2021.682132

Phylogenetic Typology
Cited by: 6
Author(s): Gerhard Jäger, Johannes Wahle
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1005986

An evolutionary learning and network approach to identifying key metabolites for osteoarthritis
Cited by: 29
Author(s): Ting Hu, Karoliina Oksanen, Weidong Zhang, Edward Randell, Andrew Furey, Guang Sun, Guangju Zhai
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008770

Principles for data analysis workflows
Cited by: 13
Author(s): Sara Stoudt, Váleri N. Vásquez, Ciera C. Martinez
Software Mentions: 1
Published: over 3 years ago

10.3389/fvets.2021.745779

Open Science for Veterinary Education Research
Cited by: 0
Author(s): Jill R D MacKay
Software Mentions: 1
Published: about 3 years ago

10.1534/g3.115.016683

XSim: Simulation of Descendants from Ancestors with Sequence Data
Cited by: 20
Author(s): Hao Cheng, Dorian J. Garrick, Rohan L. Fernando
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1005647

MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions
Cited by: 40
Author(s): Koon-Kiu Yan, Shaoke Lou, Mark Gerstein
Software Mentions: 1
Published: over 7 years ago

10.1155/2017/7835749

Quantitative Evaluation of Temporal Regularizers in Compressed Sensing Dynamic Contrast Enhanced MRI of the Breast
Cited by: 10
Author(s): Dong Wang, Lori R. Arlinghaus, Thomas E. Yankeelov, Xiaoping Yang, David Stanley Smith
Software Mentions: 1
Published: almost 8 years ago

10.1534/g3.120.401618

A Multiple-Trait Bayesian Variable Selection Regression Method for Integrating Phenotypic Causal Networks in Genome-Wide Association Studies
Cited by: 10
Author(s): Zigui Wang, David C. Chapman, Gota Morota, Hao Cheng
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12711-018-0373-2

Large-scale genomic prediction using singular value decomposition of the genotype matrix
Cited by: 22
Author(s): Jørgen Ødegård, Ulf Geir Indahl, Ismo Strandén, Theo H. E. Meuwissen
Software Mentions: 1
Published: over 6 years ago

10.1186/s12711-020-00568-0

Weighted single-step genomic best linear unbiased prediction integrating variants selected from sequencing data by association and bioinformatics analyses
Cited by: 11
Author(s): Liu A, Mogens Sandø Lund, Didier Boichard, Emre Karaman, Bernt Guldbrandtsen, Sébastien Fritz, Gert P. Aamand, U. Nielsen, Goutam Sahana, Yachun Wang, Guosheng Su
Software Mentions: 1
Published: over 4 years ago

Projects: cran: Julia

Papers Mentioning Julia 304