Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: JASPAR

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/JASPAR

R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
1 version
Latest release: almost 12 years ago
0 downloads

Papers Mentioning JASPAR 1,283

10.1186/s13578-020-00490-4
DNA methylation modification is associated with gonadal differentiation in Monopterus albus
Cited by: 7
Author(s): Xin Wang, Fengling Lai, Jun Xiong, Wei Zhu, Bi-Feng Yuan, Hanhua Cheng, Rongjia Zhou
Software Mentions: 1
Published: about 4 years ago
10.1186/s13578-018-0259-6
The roles of lncRNA in hepatic fibrosis
Cited by: 48
Author(s): Peng Hu, Lin‐Yan Wan, Jia-Jie Liang, Yanqiong Zhang, Wen-Bing Ai, Jiangfeng Wu
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12964-019-0467-7
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients
Cited by: 31
Author(s): Ulrike Neckmann, Camilla Wolowczyk, Martina Hall, Eivind Almaas, Jiang Ren, Sen Zhao, Bjarne Johannessen, Rolf Inge Skotheim, Geir Bjørkøy, Peter ten Dijke, Toril Holien
Software Mentions: 1
Published: about 5 years ago
10.1186/s12964-019-0335-5
NF-κB upregulates glutamine-fructose-6-phosphate transaminase 2 to promote migration in non-small cell lung cancer
Cited by: 33
Author(s): Szymon J. Szymura, Jacob Zaemes, David F. Allison, Sheena H. Clift, Jaclyn D'Innocenzi, Lisa G. Gray, Brian D. McKenna, Benjamin B. Morris, Stefan Bekiranov, Robin D. LeGallo, David R. Jones, Marty W. Mayo
Software Mentions: 1
Published: over 5 years ago
10.1186/s12964-018-0270-x
KLF4, a miR-32-5p targeted gene, promotes cisplatin-induced apoptosis by upregulating BIK expression in prostate cancer
Cited by: 42
Author(s): Lu Zhang, Xiaojie Li, Yulin Chao, Ruiping He, Junqiang Liu, Yi Yuan, Wenzhi Zhao, Chuanchun Han, Xishuang Song
Software Mentions: 1
Published: about 6 years ago
10.1186/s12964-017-0197-7
Impairment of IGF2 gene expression in prostate cancer is triggered by epigenetic dysregulation of IGF2-DMR0 and its interaction with KLF4
Cited by: 17
Author(s): Undraga Schagdarsurengin, Angela Lammert, Natalie Schunk, Diana Sheridan, Stefan Gattenloehner, Klaus Steger, Florian M. E. Wagenlehner, Temuujin Dansranjavin
Software Mentions: 1
Published: about 7 years ago
10.1038/s41418-019-0361-2
DC-SIGN–LEF1/TCF1–miR-185 feedback loop promotes colorectal cancer invasion and metastasis
Cited by: 31
Author(s): Ming Yuan, Xinsheng Zhang, Jingbo Zhang, Ke-Yong Wang, Yu Zhang, Wei Shang, Yinan Zhang, Jingyi Cui, Xiaomeng Shi, Heya Na, Deyu Fang, Yongchun Zuo, Shuo Ren
Software Mentions: 1
Published: over 5 years ago
10.1038/s41419-019-2072-5
Transcription factor NFAT5 contributes to the glycolytic phenotype rewiring and pancreatic cancer progression via transcription of PGK1
Cited by: 46
Author(s): Yongsheng Jiang, Ruizhe He, Yuhong Jiang, Dejun Liu, Ling‐Ye Tao, Minwei Yang, Chaoyi Lin, Yang Shen, Xueliang Fu, Jianyu Yang, Jiao Li, Yan‐Miao Huo, Rong Hua, Wei Liu, Junfeng Zhang, Baiyong Shen, Zhigang Zhang, Yongwei Sun
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41419-020-03326-8
Loss of EHF facilitates the development of treatment-induced neuroendocrine prostate cancer
Cited by: 7
Author(s): Zhi Li, Liang Deng, Chao Li, Qiangrong He, Yao He, Xiheng Hu, Yi Cai, Yu Gan
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-021-04170-0
Inhibition of nuclear receptor RORα attenuates cartilage damage in osteoarthritis by modulating IL-6/STAT3 pathway
Cited by: 13
Author(s): Tongzhou Liang, Taiqiu Chen, Jincheng Qiu, Wenjie Gao, Xianjian Qiu, Yuanxin Zhu, Xudong Wang, Yanbo Chen, Hang Zhou, Zhihuai Deng, Pengfei Li, Caixia Xu, Yan Peng, Anjing Liang, Peiqiang Su, Bo Gao, Dongsheng Huang
Software Mentions: 1
Published: about 3 years ago
10.1038/cddis.2015.46
MiR-216b is involved in pathogenesis and progression of hepatocellular carcinoma through HBx-miR-216b-IGF2BP2 signaling pathway
Cited by: 89
Author(s): Fuyao Liu, Shenjie Zhou, Yu Deng, Z. Y. Zhang, E. L. Zhang, Zhi‐Quan Wu, Zhiyong Huang, X. P. Chen
Software Mentions: 1
Published: over 9 years ago
10.1038/cddis.2016.451
LincRNA-Gm4419 knockdown ameliorates NF-κB/NLRP3 inflammasome-mediated inflammation in diabetic nephropathy
Cited by: 198
Author(s): Hong Yi, Rui Peng, Luyu Zhang, Yan Sun, Huimin Peng, Han-Deng Liu, Lijuan Yu, Ailing Li, Yajuan Zhang, Wenhao Jiang, Zheng Zhang
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41419-021-03404-5
Osteomodulin positively regulates osteogenesis through interaction with BMP2
Cited by: 23
Author(s): Wei-Ming Lin, Xiaohan Zhu, Li Gao, Mengying Mao, Daming Gao, Zhengwei Huang
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-018-0807-3
Transcriptional downregulation of miR-133b by REST promotes prostate cancer metastasis to bone via activating TGF-β signaling
Cited by: 29
Author(s): Shuai Huang, Qingde Wa, Jun Pan, Xinsheng Peng, Dong Ren, Yuhu Dai, Qing Yang, Yan Huang, Xin Zhang, Wei Zhou, Dan Yuan, Jianping Cao, Qiji Li, Peiheng He, Yubo Tang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41419-019-1854-0
Ferroportin downregulation promotes cell proliferation by modulating the Nrf2–miR-17-5p axis in multiple myeloma
Cited by: 52
Author(s): Yuanyuan Kong, Liangning Hu, Kang Lu, Yingcong Wang, Yongsheng Xie, Lu Gao, Guang Yang, Bingqian Xie, Wan He, Gege Chen, Huiqun Wu, Xiaosong Wu, Fenghuang Zhan, Jumei Shi
Software Mentions: 1
Published: about 5 years ago
10.1038/s41419-018-1149-x
NR2C2-uORF targeting UCA1-miR-627-5p-NR2C2 feedback loop to regulate the malignant behaviors of glioma cells
Cited by: 26
Author(s): Zirong Fan, Jian Zheng, Yixue Xue, Xiaobai Liu, Di Wang, Chunqing Yang, Jun Ma, Libo Liu, Xuelei Ruan, Zhenhua Wang, Yunhui Liu
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41419-019-2188-7
Long non-coding RNA DLGAP1-AS1 facilitates tumorigenesis and epithelial–mesenchymal transition in hepatocellular carcinoma via the feedback loop of miR-26a/b-5p/IL-6/JAK2/STAT3 and Wnt/β-catenin pathway
Cited by: 65
Author(s): Ye Lin, Zhixiang Jian, Haosheng Jin, Xuxia Wei, Xiongfeng Zou, Renguo Guan, Jianfeng Huang
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41419-020-2635-5
Circular RNA circSLC25A16 contributes to the glycolysis of non-small-cell lung cancer through epigenetic modification
Cited by: 42
Author(s): Hong Shangguan, Feng Hong, Dongxiao Lv, Junfei Wang, Tian Tian, Xingwen Wang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-020-03166-6
ZEB1-activated LINC01123 accelerates the malignancy in lung adenocarcinoma through NOTCH signaling pathway
Cited by: 19
Author(s): Miao Zhang, Yaguang Han, Yi Zheng, Yan Zhang, Xin Zhao, Zhen-Lin Gao, Xinyan Li
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-021-04081-0
STAT3/LINC00671 axis regulates papillary thyroid tumor growth and metastasis via LDHA-mediated glycolysis
Cited by: 31
Author(s): Nan Huo, Rui Cong, Zhijia Sun, Wenchao Li, Xiang Zhu, Chunyuan Xue, Chen Zhao, Luyuan Ma, Zhong Chu, Yuchen Han, Xiaofeng Kang, Shuang Jia, Nan Du, Lei Kang, Xiaowei Xu
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-021-03719-3
POU2F2 regulates glycolytic reprogramming and glioblastoma progression via PDPK1-dependent activation of PI3K/AKT/mTOR pathway
Cited by: 24
Author(s): Rui Yang, Mei Wang, Guanghui Zhang, Yanping Li, Lulin Wang, Hongjuan Cui
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-020-2486-0
Targeting the ERβ/Angiopoietin-2/Tie-2 signaling-mediated angiogenesis with the FDA-approved anti-estrogen Faslodex to increase the Sunitinib sensitivity in RCC
Cited by: 16
Author(s): Junfei Gu, Yong Zhang, Zhenwei Han, Lei Gao, Jinfeng Cui, Yin Sun, Yuanjie Niu, Bosen You, Chi‐Ping Huang, Chawnshang Chang, Xiaolu Wang, Shuyuan Yeh
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-021-03699-4
PXDN reduces autophagic flux in insulin-resistant cardiomyocytes via modulating FoxO1
Cited by: 4
Author(s): Chan Li, Zhaoya Liu, Qian Xu, Huihui Peng, Jing Cao, Huiping Zhou, Guogang Zhang, Guangjie Cheng, Ruizheng Shi
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-03440-1
The novel ZEB1-upregulated protein PRTG induced by Helicobacter pylori infection promotes gastric carcinogenesis through the cGMP/PKG signaling pathway
Cited by: 15
Author(s): Tian Xia, Chunhui Yuan, Xia Guo, Honghao Wang, Qian Cai, Yun Xiang, Wenjing Luo, Gao Liu
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-021-04038-3
EGR2-mediated regulation of m6A reader IGF2BP proteins drive RCC tumorigenesis and metastasis via enhancing S1PR3 mRNA stabilization
Cited by: 33
Author(s): Yufan Ying, Xueyou Ma, Jiajie Fang, Shiming Chen, Weiyu Wang, Jiangfeng Li, Haiyun Xie, Jian Wu, Bo Xie, Ben Liu, Xiao Wang, Xiangyi Zheng, Liping Xie
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-020-03120-6
GDF11 inhibits cardiomyocyte pyroptosis and exerts cardioprotection in acute myocardial infarction mice by upregulation of transcription factor HOXA3
Cited by: 32
Author(s): Zhange Li, Hui Xu, Xin Liu, Yang Hong, Han Liang, Heng Liu, Xue Bai, Lei Wang, Xia Li, Seth Mikaye Monayo, Justine Nyakango Mokembo, Nabanit Kumar Jha, Baofeng Yang, Yong Zhang
Software Mentions: 1
Published: about 4 years ago
10.1038/s41419-020-2683-x
LncRNA SNHG15 regulates EGFR-TKI acquired resistance in lung adenocarcinoma through sponging miR-451 to upregulate MDR-1
Cited by: 31
Author(s): Jiayuan Huang, Banzhou Pan, Xia Gao, Jingni Zhu, Chenchen Li, Jifeng Feng
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-019-1516-2
USF1-induced upregulation of LINC01048 promotes cell proliferation and apoptosis in cutaneous squamous cell carcinoma by binding to TAF15 to transcriptionally activate YAP1
Cited by: 26
Author(s): Lezi Chen, Quan Chen, Shifeng Kuang, Chengli Zhao, Lu Yang, Yi Zhang, Huilan Zhu, Yang Ridong
Software Mentions: 1
Published: over 5 years ago
10.1038/s41419-021-03554-6
FoxP3-miR-150-5p/3p suppresses ovarian tumorigenesis via an IGF1R/IRS1 pathway feedback loop
Cited by: 16
Author(s): Qinkai Zhang, Xunzhu Zhou, Maoping Wan, Xixi Zeng, Junhua Luo, Yesha Xu, Liying Ji, Jianan Zhang, Pei Fan, Jianing Zhong, Jianmin Wu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-03662-3
E47 upregulates ΔNp63α to promote growth of squamous cell carcinoma
Cited by: 4
Author(s): Jing Xu, Fengtian Li, Yinjie Gao, Rongtian Guo, Liangping Ding, Mengyuan Fu, Yong Yi, Chen Hu, Zhi‐Xiong Jim Xiao, Mengmeng Niu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-019-2215-8
Loss of PARP-1 attenuates diabetic arteriosclerotic calcification via Stat1/Runx2 axis
Cited by: 30
Author(s): Peng Li, Ying Wang, Xue Li, Bin Liu, Zhaoyang Wang, Fei Xie, Wen Qiao, Er-shun Liang, Qinghua Lu, Mingxiang Zhang
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41419-020-2474-4
MicroRNA-4476 promotes glioma progression through a miR-4476/APC/β-catenin/c-Jun positive feedback loop
Cited by: 18
Author(s): Jie Lin, Shilei Ding, Congying Xie, Renhui Yi, Zhi‐Yong Wu, Jie Luo, Tengyue Huang, Yu Zeng, Xizhao Wang, Anqi Xu, Jiangnan Xiao, Ye Song, Xian Zhang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-021-03956-6
MiR-195 inhibits the ubiquitination and degradation of YY1 by Smurf2, and induces EMT and cell permeability of retinal pigment epithelial cells
Cited by: 23
Author(s): Su Fu, Mei-Chen Lai, Yunyao Zheng, Yawen Sun, Jingjun Qiu, Fu Gui, Qian Zhang, Fei Liu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-020-2569-y
LncRNA SNHG17 aggravated prostate cancer progression through regulating its homolog SNORA71B via a positive feedback loop
Cited by: 26
Author(s): Gaoliang Wu, Chao Hao, Xueliang Qi, Jianqiang Nie, Weimin Zhou, Ji Huang, Qiuming He
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-020-03273-4
SOX9-activated FARSA-AS1 predetermines cell growth, stemness, and metastasis in colorectal cancer through upregulating FARSA and SOX9
Cited by: 33
Author(s): Taicheng Zhou, Lili Wu, Ning Ma, Fuxin Tang, Zhenning Yu, Zhipeng Jiang, Yingru Li, Zhen Zong, Kunpeng Hu
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-020-03188-0
LncRNA TINCR favors tumorigenesis via STAT3–TINCR–EGFR-feedback loop by recruiting DNMT1 and acting as a competing endogenous RNA in human breast cancer
Cited by: 20
Author(s): Qin Wang, Jiena Liu, Zilong You, Yanling Yin, Lei Liu, Yujuan Kang, Siwei Li, Shipeng Ning, Hui Li, Yajie Gong, Shouping Xu, Da Pang
Software Mentions: 1
Published: almost 4 years ago
10.1038/cddis.2014.506
ROS inhibit autophagy by downregulating ULK1 mediated by the phosphorylation of p53 in selenite-treated NB4 cells
Cited by: 52
Author(s): Yali Ci, Kejian Shi, Jiajia An, Yihui Yang, Kaiyuan Hui, Pa Wu, Lili Shi, Caimin Xu
Software Mentions: 1
Published: almost 10 years ago
10.1038/s41419-021-04060-5
Aberrant super-enhancer-driven oncogene ENC1 promotes the radio-resistance of breast carcinoma
Cited by: 6
Author(s): Lin Li, Nan Wang, Mingzhi Zhu, Youyi Xiong, Fang Wang, Guangcheng Guo, Xinxing Wang, Yuanyan Gu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-04132-6
LPCAT1 reprogramming cholesterol metabolism promotes the progression of esophageal squamous cell carcinoma
Cited by: 24
Author(s): Mingyue Tao, Jing Luo, Tong Gu, Xiang Yu, Zhen Song, Yali Jun, Hao Gu, Kairong Han, Xiujuan Huang, Weiyong Yu, Sujuan Sun, Zhengwei Zhang, Ling Lü, Xiaofei Chen, Li Zhang, Chao Luo, Qilong Wang
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-021-03794-6
Hsa_circ_0026628 promotes the development of colorectal cancer by targeting SP1 to activate the Wnt/β-catenin pathway
Cited by: 19
Author(s): Xuexiu Zhang, Jianning Yao, Haoling Shi, Bing Gao, Haining Zhou, Yanzhen Zhang, Dan Zhao, Shilin Gao, Chunfeng Wang, Lianfeng Zhang
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-019-1932-3
PAX5-induced upregulation of IDH1-AS1 promotes tumor growth in prostate cancer by regulating ATG5-mediated autophagy
Cited by: 34
Author(s): Nan Zhang, Zhongyi Li, Fuding Bai, Shigeng Zhang
Software Mentions: 1
Published: about 5 years ago
10.1038/s41419-019-1838-0
The Hippo effector TAZ promotes cancer stemness by transcriptional activation of SOX2 in head neck squamous cell carcinoma
Cited by: 38
Author(s): Li Jin, Zhongwu Li, Yaping Wu, Yanling Wang, Dongmiao Wang, Wei Zhang, Hua Yuan, Jinhai Ye, Xiaomeng Song, Jianrong Yang, Hongbing Jiang, Jie Cheng
Software Mentions: 1
Published: over 5 years ago
10.1038/s41419-021-03538-6
EphA2 super-enhancer promotes tumor progression by recruiting FOSL2 and TCF7L2 to activate the target gene EphA2
Cited by: 11
Author(s): Shuang Cui, Qiong Wu, Ming Liu, Mu Chun Su, ShiYou Liu, Lan Shao, Xiao Han, Hongbin He
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-019-1886-5
LncRNA SNHG14/miR-5590-3p/ZEB1 positive feedback loop promoted diffuse large B cell lymphoma progression and immune evasion through regulating PD-1/PD-L1 checkpoint
Cited by: 131
Author(s): Lina Zhao, Ye Liu, Jingbo Zhang, Yan Liu, Qi Qi
Software Mentions: 1
Published: about 5 years ago
10.1038/s41419-019-1827-3
ERα-mediated alterations in circ_0023642 and miR-490-5p signaling suppress bladder cancer invasion
Cited by: 25
Author(s): Longxiang Wu, Mengda Zhang, Lin Qi, Xiongbing Zu, Yuan Li, Longfei Liu, Minfeng Chen, Yangle Li, Wei He, Xiheng Hu, Miao Mo, Zhenyu Ou, Long Wang
Software Mentions: 1
Published: about 5 years ago
10.1038/s41419-020-03124-2
The membrane-bound and soluble form of melanotransferrin function independently in the diagnosis and targeted therapy of lung cancer
Cited by: 7
Author(s): Yuanyuan Lei, Zhiliang Lu, Jianbing Huang, Ruochuan Zang, Yun Cao, Shuangshuang Mao, Lingling Fang, Chengming Liu, Xinfeng Wang, Sufei Zheng, Nan Sun, Jie He
Software Mentions: 1
Published: about 4 years ago
10.1038/s41419-020-02804-3
EN2 as an oncogene promotes tumor progression via regulating CCL20 in colorectal cancer
Cited by: 20
Author(s): Yimin Li, Jiaqi Liu, Qing Xiao, Ruotong Tian, Zhengwei Zhou, Yaqi Gan, Yuanyuan Li, Guang Shu, Gang Yin
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-020-2471-7
Sepiapterin reductase promotes hepatocellular carcinoma progression via FoxO3a/Bim signaling in a nonenzymatic manner
Cited by: 19
Author(s): Yao Wu, Hongzhi Du, Meixiao Zhan, Hongxv Wang, Peng Chen, Danyu Du, Xinyi Liu, Xingxv Huang, Ping Ma, Dezheng Peng, Li Sun, Shengtao Yuan, Jian Ding, Ligong Lu, Jingwei Jiang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-019-1361-3
Long non-coding RNA linc00665 promotes lung adenocarcinoma progression and functions as ceRNA to regulate AKR1B10-ERK signaling by sponging miR-98
Cited by: 98
Author(s): Zhuang‐Zhuang Cong, Yifei Diao, Yang Xu, Xiaokun Li, Zhisheng Jiang, Chengchen Shao, Shunrong Ji, Yi Shen, Wei De, Yong Qiang
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41419-018-0876-3
CXCL1 derived from tumor-associated macrophages promotes breast cancer metastasis via activating NF-κB/SOX4 signaling
Cited by: 164
Author(s): Neng Wang, Weiping Liu, Yifeng Zheng, Shengqi Wang, Bowen Yang, Min Li, Ju‐Xian Song, Fengxue Zhang, Xiaolin Zhang, Qi Wang, Zhiyu Wang
Software Mentions: 1
Published: about 6 years ago
10.1038/s41419-019-1326-6
MiR-30a regulates cancer cell response to chemotherapy through SNAI1/IRS1/AKT pathway
Cited by: 33
Author(s): Tingting Wang, Gang Chen, Xuemei Ma, Ye Yang, Yali Chen, Yangqin Peng, Zhigang Bai, Zhongtao Zhang, Huadong Pei, Guo Wei
Software Mentions: 1
Published: over 5 years ago
10.1038/s41419-020-2267-9
PABPC1-induced stabilization of BDNF-AS inhibits malignant progression of glioblastoma cells through STAU1-mediated decay
Cited by: 37
Author(s): Rui Su, Jun Ma, Jian Zheng, Xiaobai Liu, Yunhui Liu, Xuelei Ruan, Shuyuan Shen, Chunqing Yang, Di Wang, Heng Cai, Zhen Li, Yixue Xue
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41419-020-2662-2
POU4F1 promotes the resistance of melanoma to BRAF inhibitors through MEK/ERK pathway activation and MITF up-regulation
Cited by: 10
Author(s): Lin Liu, Yi Qiao, Jingjing Ma, Yu Liu, Tao Zhao, Weinan Guo, Guannan Zhu, Sen Guo, Shiyu Wang, Tianwen Gao, Chunying Li, Qiong Shi
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-020-02827-w
Exosomal lncRNA DOCK9-AS2 derived from cancer stem cell-like cells activated Wnt/β-catenin pathway to aggravate stemness, proliferation, migration, and invasion in papillary thyroid carcinoma
Cited by: 42
Author(s): Wencheng Dai, Xinqiao Jin, Han Liang, Haijing Huang, Zhenhua Ji, Xinjiang Xu, Mingming Tang, Bin Jiang, Weixian Chen
Software Mentions: 1
Published: about 4 years ago
10.1038/s41419-020-03034-3
Mesenchymal stem cells reverse EMT process through blocking the activation of NF-κB and Hedgehog pathways in LPS-induced acute lung injury
Cited by: 87
Author(s): Kun Xiao, Wanxue He, Wei Guan, Fei Hou, Yan Peng, Jianqiao Xu, Ting Zhou, Yuhong Liu, Lixin Xie
Software Mentions: 1
Published: about 4 years ago
10.1038/s41419-017-0249-3
LncRNA NCK1-AS1 promotes proliferation and induces cell cycle progression by crosstalk NCK1-AS1/miR-6857/CDK1 pathway
Cited by: 47
Author(s): Haiyu Li, Yongqin Jia, Jun Cheng, Geli Liu, Fangzhou Song
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41419-019-1882-9
Protease Nexin I is a feedback regulator of EGF/PKC/MAPK/EGR1 signaling in breast cancer cells metastasis and stemness
Cited by: 20
Author(s): Tingting Tang, Qinhua Zhu, Xinping Li, Gaole Zhu, Siwei Deng, Yingshan Wang, Lingyu Ni, Xinyuan Chen, Yanfeng Zhang, Tiansong Xia, Ke Zen, Yi Pan, Liang Jin
Software Mentions: 1
Published: about 5 years ago
10.1038/s41419-019-1631-0
Mechanism of Snhg8/miR-384/Hoxa13/FAM3A axis regulating neuronal apoptosis in ischemic mice model
Cited by: 23
Author(s): Jie Liu, Ping An, Yixue Xue, Dongsheng Che, Xiaobai Liu, Jian Zheng, Yunhui Liu, Chunqing Yang, Zhen Li, Yu B
Software Mentions: 1
Published: over 5 years ago
10.1038/s41419-021-03753-1
A KLF4/PiHL/EZH2/HMGA2 regulatory axis and its function in promoting oxaliplatin-resistance of colorectal cancer
Cited by: 35
Author(s): Xuan Deng, Fanyang Kong, Si Li, Hanqiang Jiang, Dong Liu, Xiaowu Xu, Xinju Zhang, Hong Yuan, Ying Xü, Yi-Min Chu, Haixia Peng, Ming Guan
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-018-0494-0
PGC1α promotes cholangiocarcinoma metastasis by upregulating PDHA1 and MPC1 expression to reverse the Warburg effect
Cited by: 42
Author(s): Dan Li, Chaoqun Wang, Panfei Ma, Qingan Yu, Mingqi Gu, Liqian Dong, Wenjing Jiang, Shangha Pan, Changming Xie, Jianyong Han, Yaliang Lan, Jing Sun, Ping Sheng, Kunpeng Liu, Yaohua Wu, Lianxin Liu, Yong Ma, Hongchi Jiang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41419-020-03236-9
LINC01106 post-transcriptionally regulates ELK3 and HOXD8 to promote bladder cancer progression
Cited by: 25
Author(s): Meng Li, Xing Zeng, Zhaoxin Guo, Zhaoxu Liu
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41419-021-04047-2
Histone deacetylase 2 knockout suppresses immune escape of triple-negative breast cancer cells via downregulating PD-L1 expression
Cited by: 17
Author(s): Pengfei Xu, Wei Xiong, Yun Lin, Liping Fan, Hongchao Pan, Yaochen Li
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-03522-0
Calcium channel α2δ1 subunit is a functional marker and therapeutic target for tumor-initiating cells in non-small cell lung cancer
Cited by: 15
Author(s): Yuanyuan Ma, Xiaodan Yang, Wei Zhao, Yue Yang, Zhiqian Zhang
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-020-03026-3
LINC01106 drives colorectal cancer growth and stemness through a positive feedback loop to regulate the Gli family factors
Cited by: 18
Author(s): Kun Guo, Wenjing Gong, Qin Wang, Guosheng Gu, Tao Zheng, Ying Liu, Weijie Li, Fei Miao, Hong‐Guang Xie, Chao Yang, Jianbo Yang, Zhiqiang Zhu
Software Mentions: 1
Published: about 4 years ago
10.1038/s41419-021-03820-7
Upregulated PPARG2 facilitates interaction with demethylated AKAP12 gene promoter and suppresses proliferation in prostate cancer
Cited by: 8
Author(s): Feng Li, Tingting Lü, Dongmei Liu, Chong Zhang, Yonghui Zhang, Fenglin Dong
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-03574-2
Cancer-associated fibroblasts-mediated ATF4 expression promotes malignancy and gemcitabine resistance in pancreatic cancer via the TGF-β1/SMAD2/3 pathway and ABCC1 transactivation
Cited by: 39
Author(s): Liuya Wei, Lin Q, Yanan Lu, Guolin Li, Liqin Huang, Zhiqiang Fu, Rufu Chen, Quanbo Zhou
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-04080-1
LncRNA KCNQ1OT1 activated by c-Myc promotes cell proliferation via interacting with FUS to stabilize MAP3K1 in acute promyelocytic leukemia
Cited by: 12
Author(s): Doudou Tang, Yujiao Luo, Yafeng Jiang, Piao Hu, Hongling Peng, Shangjie Wu, Guangsen Zhang, Yewei Wang
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-021-04119-3
LncRNA ZNFTR functions as an inhibitor in pancreatic cancer by modulating ATF3/ZNF24/VEGFA pathway
Cited by: 13
Author(s): Wei Li, Shengbo Han, Ping Hu, Chen Ding, Zhu Zeng, Yu Hu, Feifei Xu, Jiang Tang, Fan Wang, Yong Zhao, Meng Huang, Gang Zhao
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-021-03933-z
FAM64A is an androgen receptor-regulated feedback tumor promoter in prostate cancer
Cited by: 12
Author(s): Yingchen Zhou, Longhua Ou, Jun Xu, Haichao Yuan, Junpeng Luo, Shi Bing, Xianxin Li, Shangqi Yang, Yan Wang
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-020-02844-9
Aldosterone from endometrial glands is benefit for human decidualization
Cited by: 16
Author(s): Shuyun Li, Zhuo Song, Yaping Yan, Bo Li, Min-Jie Song, Yue-Fang Liu, Zeng-Ming Yang, Mengyuan Li, Aixia Liu, Qisheng Song, Zeng‐Ming Yang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41420-020-00371-2
The ZNF750–RAC1 axis as potential prognostic factor for breast cancer
Cited by: 12
Author(s): Alessio Butera, Matteo Cassandri, Francesco Rugolo, Massimiliano Agostini, Gerry Melino
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41420-020-0290-3
TGR5-HNF4α axis contributes to bile acid-induced gastric intestinal metaplasia markers expression
Cited by: 14
Author(s): Ni Zhen, Yali Min, Cheng-Bo Han, Yuan Tan, Wenquan Lu, Hassan Ashktorab, Duane T. Smoot, Qiong Wu, Jian Wu, Wei‐Zheng Zeng, Yongquan Shi
Software Mentions: 1
Published: over 4 years ago
10.1038/cddiscovery.2016.90
OTX2 impedes self–renewal of porcine iPS cells through downregulation of NANOG expression
Cited by: 4
Author(s): Ning Wang, Yaxian Wang, Youlong Xie, Huayan Wang
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41420-021-00507-y
Effect of circular RNA, mmu_circ_0000296, on neuronal apoptosis in chronic cerebral ischaemia via the miR-194-5p/Runx3/Sirt1 axis
Cited by: 7
Author(s): Keyu Huang, Chunqing Yang, Jian Zheng, Xiaobai Liu, Jie Liu, Dongsheng Che, Yixue Xue, Ping An, Di Wang, Xuelei Ruan, Yu B
Software Mentions: 1
Published: over 3 years ago
10.1007/s00018-018-2757-4
SLC52A3 expression is activated by NF-κB p65/Rel-B and serves as a prognostic biomarker in esophageal cancer
Cited by: 37
Author(s): Li-Wen Lin, Xiaoyan Pang, Fei Lei, Jiasheng Zhang, Wei Wang, Lian‐Di Liao, Xiu‐E Xu, Jianzhong He, Jian‐Yi Wu, Zhi‐Yong Wu, Lidong Wang, De–Chen Lin, En‐Min Li, Li‐Yan Xu
Software Mentions: 1
Published: almost 7 years ago
10.1111/cpr.12835
HOXD3 was negatively regulated by YY1 recruiting HDAC1 to suppress progression of hepatocellular carcinoma cells via ITGA2 pathway
Cited by: 13
Author(s): Lumin Wang, Yi Gao, Xiangen Zhao, Chen Guo, Xiaofei Wang, Yang Yang, Cong Han, Lingyu Zhao, Yannan Qin, Liying Liu, Chen Huang, Wenjing Wang
Software Mentions: 1
Published: over 4 years ago
10.1111/cpr.12569
STAT3‐induced upregulation of lncRNA ABHD11‐AS1 promotes tumour progression in papillary thyroid carcinoma by regulating miR‐1301‐3p/STAT3 axis and PI3K/AKT signalling pathway
Cited by: 56
Author(s): Wen Guo Jiang, Hongwei Wang, Tingjun Dong, Panpan Gan, Henghu Fang, Sudong Wu, Jingjiao Li, Yuanyuan Zhang, Rui Du, Qingqing Zhu
Software Mentions: 1
Published: almost 6 years ago
10.1111/cpr.12776
IL‐6 promotes metastasis of non‐small‐cell lung cancer by up‐regulating TIM‐4 via NF‐κB
Cited by: 54
Author(s): Wen Li, Hongxing Wang, Fuxiang Bai, Liang Ding, Ying Huang, Changchang Lu, Siyuan Chen, Chunyang Li, Xuetian Yue, Xiaohong Liang, Chao Ma, Lixiang Xu, Lifen Gao
Software Mentions: 1
Published: almost 5 years ago
10.1111/cpr.12551
MiR‐326/Sp1/KLF3: A novel regulatory axis in lung cancer progression
Cited by: 38
Author(s): Rong Wang, Jiali Xu, Jing Xu, Wei Zhu, Tianzhu Qiu, Jun Li, Meiling Zhang, Qianqian Wang, Tongpeng Xu, Renhua Guo, Kaihua Lu, Yongmei Yin, Yanhong Gu, Lingjun Zhu, Puwen Huang, Ping Liu, Lianke Liu, Wei De, Yongqian Shu
Software Mentions: 1
Published: almost 6 years ago
10.3390/cells8050479
Transcriptional Regulation of Selenoprotein F by Heat Shock Factor 1 during Selenium Supplementation and Stress Response
Cited by: 8
Author(s): Bingyu Ren, Yanmei Huang, Chen Zou, Yingying Wu, Yuru Huang, Jiazuan Ni, Jichun Tian
Software Mentions: 1
Published: over 5 years ago
10.3390/cells8050480
Long Noncoding RNA HCP5, a Hybrid HLA Class I Endogenous Retroviral Gene: Structure, Expression, and Disease Associations
Cited by: 48
Author(s): Jerzy K. Kulski
Software Mentions: 1
Published: over 5 years ago
10.3390/cells9102230
TAZ Represses the Neuronal Commitment of Neural Stem Cells
Cited by: 9
Author(s): Natalia Robledinos-Antón, Maribel Escoll, Kun‐Liang Guan, Antonio Cuadrado
Software Mentions: 1
Published: about 4 years ago
10.3390/cells10082091
Comprehensive Integrative Analysis Reveals the Association of KLF4 with Macrophage Infiltration and Polarization in Lung Cancer Microenvironment
Cited by: 15
Author(s): Shweta Arora, Prithvi Singh, Shaniya Ahmad, Tanveer Ahmad, Ravins Dohare, Saleh A. Almatroodi, Faris Alrumaihi, Arshad Husain Rahmani, Mansoor Ali Syed
Software Mentions: 1
Published: over 3 years ago
10.3390/cells9040960
Progesterone through Progesterone Receptor B Isoform Promotes Rodent Embryonic Oligodendrogenesis
Cited by: 5
Author(s): Juan Carlos González-Orozco, Aylin Del Moral-Morales, Ignacio Camacho‐Arroyo
Software Mentions: 1
Published: over 4 years ago
10.1186/s13148-021-01071-z
DNA hypermethylation contributes to colorectal cancer metastasis by regulating the binding of CEBPB and TFCP2 to the CPEB1 promoter
Cited by: 11
Author(s): Keke Shao, Weilin Pu, Jianfeng Zhang, Shicheng Guo, Fei Qian, Ingrid Glurich, Qing Jin, Yanyun Ma, Shaoqing Ju, Zhao Zhang, Weifeng Ding
Software Mentions: 1
Published: over 3 years ago
10.1186/s13148-019-0611-7
Aberrant methylation of Pax3 gene and neural tube defects in association with exposure to polycyclic aromatic hydrocarbons
Cited by: 25
Author(s): Shanshan Lin, Aiguo Ren, Linlin Wang, Chloe Santos, Lei Jin, Zhiwen Li, Nicholas D. E. Greene
Software Mentions: 1
Published: almost 6 years ago
10.1002/ctm2.366
Hypoxia‐induced cofilin 1 promotes hepatocellular carcinoma progression by regulating the PLD1/AKT pathway
Cited by: 27
Author(s): Bowen Yao, Yazhao Li, Tianxiang Chen, Yongshen Niu, Yufeng Wang, Yuanyuan Yang, Xinyu Wei, Qingguang Liu, Kangsheng Tu
Software Mentions: 1
Published: over 3 years ago
10.1002/ctm2.478
Tumor‐derived exosomal miR‐19b‐3p facilitates M2 macrophage polarization and exosomal LINC00273 secretion to promote lung adenocarcinoma metastasis via Hippo pathway
Cited by: 70
Author(s): Jing Chen, Kai Zhang, Yingru Zhi, Yin Wu, Baoan Chen, Jinyu Bai, Xuerong Wang
Software Mentions: 1
Published: about 3 years ago
10.1002/ctm2.349
Hypoxic colorectal cancer‐derived extracellular vesicles deliver microRNA‐361‐3p to facilitate cell proliferation by targeting TRAF3 via the noncanonical NF‐κB pathways
Cited by: 18
Author(s): Jie Li, Peng Yang, Fangyu Chen, Yuqian Tan, Changzhi Huang, Hengyang Shen, Cong Peng, Yifei Feng, Yueming Sun
Software Mentions: 1
Published: over 3 years ago
10.1002/ctm2.395
FABP4 deactivates NF‐κB‐IL1α pathway by ubiquitinating ATPB in tumor‐associated macrophages and promotes neuroblastoma progression
Cited by: 15
Author(s): Lei Miao, Zhuo Zhang, Jue Tang, Xiaomei Huang, Jiabin Liu, Haiyun Wang, Huimin Xia, Jing He
Software Mentions: 1
Published: over 3 years ago
10.1038/s42003-020-01354-w
Broad-complex transcription factor mediates opposing hormonal regulation of two phylogenetically distant arginine kinase genes in Tribolium castaneum
Cited by: 8
Author(s): Nan Zhang, Heng Jiang, Xiangkun Meng, Kun Qian, Yaping Liu, Qisheng Song, David Stanley, Jin-Cai Wu, Yoonseong Park, Jianjun Wang
Software Mentions: 1
Published: about 4 years ago
10.1038/s42003-019-0600-6
Mechanical strain promotes skin fibrosis through LRG-1 induction mediated by ELK1 and ERK signalling
Cited by: 33
Author(s): Ya Gao, Jia Zhou, Zhibo Xie, Jing Wang, Chia-Kang Ho, Yifan Zhang, Qingfeng Li
Software Mentions: 1
Published: about 5 years ago
10.1093/database/baw105
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki
Cited by: 61
Author(s): Imad Abugessaisa, Hisashi Shimoji, Serkan Sahin, Atsushi Kondo, Jayson Harshbarger, Marina Lizio, Yoshihide Hayashizaki, Piero Carninci, Alistair R.R. Forrest, Takeya Kasukawa, Hideya Kawaji
Software Mentions: 1
Published: almost 9 years ago
10.1093/database/baaa038
RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum
Cited by: 6
Author(s): Gleb Moisseyev, Kiyoul Park, Alix Cui, D. B. de Freitas, Divith Rajagopal, Anji Reddy Konda, Madalayne Martin-Olenski, Mackenzie Mcham, Kan Liu, Qian Du, James C. Schnable, Etsuko N. Moriyama, Edgar B. Cahoon, Chi Zhang
Software Mentions: 1
Published: almost 5 years ago
10.1093/database/bax038
RetrogeneDB–a database of plant and animal retrocopies
Cited by: 28
Author(s): Wojciech Rosikiewicz, Michał Kabza, Jan G. Kosiński, Joanna Ciomborowska-Basheer, Magdalena Regina Kubiak, Izabela Makałowska
Software Mentions: 1
Published: almost 8 years ago
10.1093/database/bav095
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse
Cited by: 321
Author(s): Zhi Ping Liu, Canglin Wu, Hongyu Miao, Hulin Wu
Software Mentions: 1
Published: almost 10 years ago
10.1016/j.ydbio.2012.02.025
Lens development depends on a pair of highly conserved Sox21 regulatory elements
Cited by: 22
Author(s): Stefan Pauls, S.G. Smith, Greg Elgar
Software Mentions: 1
Published: over 12 years ago
10.1016/j.ydbio.2014.03.013
Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity
Cited by: 8
Author(s): Wei‐Chung Chen, Stefan Pauls, Jamil Bacha, Greg Elgar, Matthew Loose, Sebastian M. Shimeld
Software Mentions: 1
Published: over 10 years ago
10.1016/j.devcel.2017.11.021
Long-Range Signaling Activation and Local Inhibition Separate the Mesoderm and Endoderm Lineages
Cited by: 41
Author(s): Antonius L. van Boxtel, Andrew D. Economou, Claire Heliot, Caroline S. Hill
Software Mentions: 1
Published: almost 7 years ago
10.3390/diagnostics11040659
Concomitant Mutations G12D and G13D on the Exon 2 of the KRAS Gene: Two Cases of Women with Colon Adenocarcinoma
Cited by: 4
Author(s): Elena De Falco, Luca Pacini, Daniela Bastianelli, Gian Paolo Spinelli, Chiara Spoto, Enzo Veltri, Antonella Calogero
Software Mentions: 1
Published: over 3 years ago