Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: JASPAR

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/JASPAR

R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
1 version
Latest release: almost 12 years ago
0 downloads

Papers Mentioning JASPAR 1,283

10.3390/biomedicines7030071
Zebrafish: A Powerful Model for Understanding the Functional Relevance of Noncoding Region Mutations in Human Genetic Diseases
Cited by: 6
Author(s): Anita Mann, Shipra Bhatia
Software Mentions: 1
Published: about 5 years ago
10.3390/biom10101382
Comparative Characterization of Two cxcl8 Homologs in Oplegnathus fasciatus: Genomic, Transcriptional and Functional Analyses
Cited by: 4
Author(s): Navaneethaiyer Umasuthan, S.D.N.K. Bathige, William Shanthakumar Thulasitha, Minyoung Oh, Jehee Lee
Software Mentions: 1
Published: about 4 years ago
10.3390/biom11050721
Glucocorticoid Receptor Alpha Targets SLC2A4 to Regulate Protein Synthesis and Breakdown in Porcine Skeletal Muscle Cells
Cited by: 0
Author(s): Xi Du, Weijing Xu, Jiali Shi, Kai Guo, Chang-Tong Guo, Rong Zheng, Siwen Jiang, Jin Choul Chai
Software Mentions: 1
Published: over 3 years ago
10.1042/BSR20190994
SP1–DLEU1–miR-4429 feedback loop promotes cell proliferative and anti-apoptotic abilities in human glioblastoma
Cited by: 15
Author(s): Xiaolei Liu, Ruwei Chen, Lijun Liu
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20191203
Promoter polymorphisms in the lncRNA-MIAT gene associated with acute myocardial infarction in Chinese Han population: a case–control study
Cited by: 8
Author(s): Ruchao Ma, Xiaohui He, Xiaoli Zhu, Shuchao Pang, Bo Yan
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20193299
STAT3-induced up-regulation of lncRNA NEAT1 as a ceRNA facilitates abdominal aortic aneurysm formation by elevating TULP3
Cited by: 18
Author(s): Bing Cai, Baihui Yang, Dong Huang, Di Wang, Jun Tian, Feiyun Chen, Xi Wang
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13068-020-01693-0
Heteroexpression of Osa-miR319b improved switchgrass biomass yield and feedstock quality by repression of PvPCF5
Cited by: 10
Author(s): Yanrong Liu, Jianping Yan, Kexin Wang, Dayong Li, Young-Tak Han, Wanjun Zhang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41408-021-00447-x
JAK2 activation promotes tumorigenesis in ALK-negative anaplastic large cell lymphoma via regulating oncogenic STAT1-PVT1 lncRNA axis
Cited by: 2
Author(s): Le Kang, Linda Wellik, Mathew S. Maurer, Ellen D. McPhail, Thomas E. Witzig, Mamta Gupta
Software Mentions: 1
Published: over 3 years ago
10.1038/s41413-019-0045-z
Hypoxia-inducible factor 2α is a negative regulator of osteoblastogenesis and bone mass accrual
Cited by: 35
Author(s): Christophe Merceron, Kavitha Ranganathan, Elizabeth Wang, Zachary Tata, Shreya Makkapati, Mohd Parvez Khan, Laura Mangiavini, Qing Yao, Laura Castellini, Benjamin Lévi, Amato J. Giaccia, Ernestina Schipani
Software Mentions: 1
Published: over 5 years ago
10.17305/bjbms.2020.4887
The effect and molecular mechanism of hypoxia on proliferation and apoptosis of CD133+ renal stem cells
Cited by: 3
Author(s): Hong Liu, Cui Liu, Yan Qü
Software Mentions: 1
Published: over 4 years ago
10.1038/s41416-020-01032-y
E2F7−EZH2 axis regulates PTEN/AKT/mTOR signalling and glioblastoma progression
Cited by: 42
Author(s): Rui Yang, Mei Wang, Guanghui Zhang, Yonghua Bao, Yanan Wu, Xiuxiu Li, Wancai Yang, Hongjuan Cui
Software Mentions: 1
Published: over 4 years ago
10.1002/brb3.314
Polymorphisms of<i>IKBKE</i>gene are associated with major depressive disorder and panic disorder
Cited by: 5
Author(s): Tanel Traks, Kati Koido, Roman Balõtšev, Triin Eller, Sulev Kõks, Eduard Maron, Innar Tõru, Jakov Shlik, Eero Vasar, Veiko Vasar
Software Mentions: 1
Published: almost 10 years ago
10.1002/brb3.1249
Differential effects on neurodevelopment of <i> <scp>FTO</scp> </i> variants in obesity and bipolar disorder suggested by in silico prediction of functional impact: An analysis in Mexican population
Cited by: 5
Author(s): Erasmo Saucedo‐Uribe, Alma Delia Genis‐Mendoza, Adriana Díaz-Anzaldúa, José Jaime Martínez‐Magaña, Carlos Alfonso Tóvilla-Zárate, Isela Esther Juárez‐Rojop, Nuria Lanzagorta, Michael Escamilla, Thelma Beatriz González‐Castro, María Lilia López‐Narváez, Yazmín Hernández‐Díaz, Humberto Nicolini
Software Mentions: 1
Published: over 5 years ago
10.1590/1414-431X20187312
MAFB mediates the therapeutic effect of sleeve gastrectomy for obese diabetes mellitus by activation of FXR expression
Cited by: 2
Author(s): Jian Xu, Yong Wang, Jun Yin, Min Yin, Mofei Wang, Jingang Liu
Software Mentions: 1
Published: almost 7 years ago
10.20892/j.issn.2095-3941.2020.0131
Analysis of the &lt;i&gt;HNF4A&lt;/i&gt; isoform-regulated transcriptome identifies CCL15 as a downstream target in gastric carcinogenesis
Cited by: 5
Author(s): Ni Zhen, Wenquan Lu, Qi Li, Chuan Chun Han, Ting Yuan, Ning Sun
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12935-020-01691-0
HCG11 up-regulation induced by ELK4 suppressed proliferation in vestibular schwannoma by targeting miR-620/ELK4
Cited by: 7
Author(s): Ruiqing Long, Zhuohui Liu, Jinghui Li, Yuan Zhang, Hualin Yu
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12935-021-01994-w
Long non-coding RNA LINC01116 is activated by EGR1 and facilitates lung adenocarcinoma oncogenicity via targeting miR-744-5p/CDCA4 axis
Cited by: 9
Author(s): Ping Ren, Liang Chang, Xiaodong Hong, Xing Liu, Hong Zhang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-021-01966-0
The mutual regulatory loop between TPTEP1 and miR-1303 in leukemogenesis of acute myeloid leukemia
Cited by: 4
Author(s): Li Li, Weidong Zhao
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-020-01360-2
FOXA1-induced circOSBPL10 potentiates cervical cancer cell proliferation and migration through miR-1179/UBE2Q1 axis
Cited by: 14
Author(s): Shanshan Yang, Yiwen Jiang, Xiaochuan Ren, Dan Feng, Liaoyun Zhang, Deying He, Shiyao Hong, Li Jin, Fang Zhang, Shun Lü
Software Mentions: 1
Published: over 4 years ago
10.1186/s12935-020-01599-9
SLC2A3 promotes macrophage infiltration by glycolysis reprogramming in gastric cancer
Cited by: 35
Author(s): Xiang Yao, Zhanke He, Caolitao Qin, Xiangqian Deng, Lan Bai, Guoxin Li, Jiaolong Shi
Software Mentions: 1
Published: about 4 years ago
10.1186/s12935-020-01467-6
OIP5-AS1 contributes to tumorigenesis in hepatocellular carcinoma by miR-300/YY1-activated WNT pathway
Cited by: 8
Author(s): Yu Wang, Liping Dou, Yun Qin, Huohai Yang, Yan Peng
Software Mentions: 1
Published: about 4 years ago
10.1186/s12935-020-1158-6
MYC-regulated lncRNA NEAT1 promotes B cell proliferation and lymphomagenesis via the miR-34b-5p-GLI1 pathway in diffuse large B-cell lymphoma
Cited by: 35
Author(s): Chongsheng Qian, Ling-Jie Li, Haiwen Huang, Haifei Yang, Depei Wu
Software Mentions: 1
Published: over 4 years ago
10.1186/s12935-020-1157-7
YY1-induced lncRNA ZFPM2-AS1 facilitates cell proliferation and invasion in small cell lung cancer via upregulating of TRAF4
Cited by: 34
Author(s): Zhijun Yan, Qilian Yang, Min Xue, Sheng Wang, Weijun Hong, Xiwen Gao
Software Mentions: 1
Published: over 4 years ago
10.1186/s12935-020-01377-7
LINC00667/miR-449b-5p/YY1 axis promotes cell proliferation and migration in colorectal cancer
Cited by: 19
Author(s): Juan Yu, Furang Wang, Jun Zhang, Jing Li, Xiaoguang Chen, Guangsen Han
Software Mentions: 1
Published: over 4 years ago
10.1186/s12935-020-01265-0
FOXC2 is a prognostic biomarker and contributes to the growth and invasion of human hepatocellular carcinoma
Cited by: 7
Author(s): Jinzhang Chen, Xiaoxiang Rong, Xinhui Liu, Deyou Zheng, Xiaodong Rong, Fengsheng Chen, Peng Zhao, Feiye Liu, Jian Ruan
Software Mentions: 1
Published: over 4 years ago
10.1186/s12935-020-01649-2
ETS1-activated SNHG10 exerts oncogenic functions in glioma via targeting miR-532-3p/FBXL19 axis
Cited by: 13
Author(s): Lide Jin, Shu‐Zhen Huang, Congjin Guan, Shang‐Tzen Chang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12935-021-01879-y
Inhibition of KIF20A by transcription factor IRF6 affects the progression of renal clear cell carcinoma
Cited by: 9
Author(s): Xinwei Ma, Xiaoqi Wang, Qian Dong, Hongquan Pang, Jianming Xu, Jing Shen, Jianbing Zhu
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-020-01258-z
FOXC1-induced LINC01123 acts as a mediator in triple negative breast cancer
Cited by: 6
Author(s): Purong Zhang, Long Qi-min, Shiyan Zeng, Min Wen, Qing Lü
Software Mentions: 1
Published: over 4 years ago
10.1186/s12935-021-01874-3
miR-320a/SP1 negative reciprocal interaction contributes to cell growth and invasion in colorectal cancer
Cited by: 6
Author(s): Wenjing Zhang, Yang Huang, Zhongqiu Wang, Yanting Wu, Jingzhai Wang, Guihua Duan, Qiang Guo, Yu Zhang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-020-1099-0
SP1 induced long non-coding RNA LINC00958 overexpression facilitate cell proliferation, migration and invasion in lung adenocarcinoma via mediating miR-625-5p/CPSF7 axis
Cited by: 21
Author(s): Lingzhi Yang, Lili Li, Zizi Zhou, Yi Liu, Jinyuan Sun, Xiaoming Zhang, Huiyu Pan, Song Liu
Software Mentions: 1
Published: almost 5 years ago
10.1177/1176935119859863
Rewiring of the Transcription Factor Network in Acute Myeloid Leukemia
Cited by: 5
Author(s): Salam A. Assi, Constanze Bonifer, Peter N. Cockerill
Software Mentions: 1
Published: almost 6 years ago
10.1002/cam4.1556
Long noncoding <scp>RNA UFC</scp>1 is activated by E2F1 and exerts oncogenic properties by functioning as a ce<scp>RNA</scp> of <scp>FOXP</scp>3
Cited by: 20
Author(s): Jie Xi, Jing Feng, Saitian Zeng, Ping Huang
Software Mentions: 1
Published: over 6 years ago
10.1002/cam4.2440
HOXA10 induces BCL2 expression, inhibits apoptosis, and promotes cell proliferation in gastric cancer
Cited by: 31
Author(s): Chenlong Song, Yang Han, Huan Luo, Zhiwei Qin, Zhengqian Chen, Yuan Liu, Su Lu, Huimin Sun, Chongzhi Zhou
Software Mentions: 1
Published: over 5 years ago
10.1002/cam4.2437
Aberrant accumulation of Dickkopf 4 promotes tumor progression via forming the immune suppressive microenvironment in gastrointestinal stromal tumor
Cited by: 10
Author(s): Ming Wang, Bo Ni, Chun Zhuang, Wenyi Zhao, Lin Tu, Xiaofeng Ma, Lining Yang, Zhigang Zhang, Hui Cao
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/9898301
Functional Genetic Variant in ATG5 Gene Promoter in Acute Myocardial Infarction
Cited by: 2
Author(s): Yexin Zhang, Xiaohui He, Jiarui Li, Wentao Yang, Yunkang Cui, Shuchao Pang, Haihua Wang, Bo Yan
Software Mentions: 1
Published: over 4 years ago
10.1038/s41375-018-0178-x
Epstein−Barr virus-encoded EBNA2 alters immune checkpoint PD-L1 expression by downregulating miR-34a in B-cell lymphomas
Cited by: 105
Author(s): Eleni Anastasiadou, Dina Stroopinsky, Stella Alimperti, Alan Jiao, Athalia R. Pyzer, Claudia Cippitelli, Giuseppina Pepe, Martina Severa, Jacalyn Rosenblatt, Marilena P. Etna, Simone Rieger, Bettina Kempkes, Eliana M. Coccia, Shannan Ho Sui, Christopher Chen, Stefania Uccini, David Avigan, Alberto Faggioni, Pankaj Trivedi, Frank J. Slack
Software Mentions: 1
Published: over 6 years ago
10.3390/life11090901
Enhancement of Transgene Expression by Mild Hypothermia Is Promoter Dependent in HEK293 Cells
Cited by: 4
Author(s): Min Uk Jang, Honggi Min, Jae Seong Lee
Software Mentions: 1
Published: about 3 years ago
10.1155/2018/1756494
The Effect and Mechanism of KLF7 in the TLR4/NF-<i>κ</i>B/IL-6 Inflammatory Signal Pathway of Adipocytes
Cited by: 24
Author(s): Meixiu Zhang, Cuizhe Wang, Jinxiu Wu, Xiaodan Ha, Yuchun Deng, Xueting Zhang, Jingzhou Wang, Keru Chen, Jiale Feng, Jiaojiao Zhu, Jingui Xie, Jun Zhang
Software Mentions: 1
Published: almost 6 years ago
10.1155/2015/564625
<i>FCGR2A</i>Promoter Methylation and Risks for Intravenous Immunoglobulin Treatment Responses in Kawasaki Disease
Cited by: 15
Author(s): Ho‐Chang Kuo, Yu Wen Hsu, Mei Wu, Peng Yeong Woon, Henry Sung Ching Wong, Li Jen Tsai, Ruo Kai Lin, Sukhontip Klahan, Kai‐Sheng Hsieh, Wei Chiao Chang
Software Mentions: 1
Published: almost 10 years ago
10.1155/2017/6909415
Ubiquitin-Specific Protease 2 Modulates the Lipopolysaccharide-Elicited Expression of Proinflammatory Cytokines in Macrophage-like HL-60 Cells
Cited by: 18
Author(s): Hiroshi Kitamura, Takeshi Ishino, Yoshinori Shimamoto, Jun Okabe, Tomomi Miyamoto, Eiki Takahashi, Isao Miyoshi
Software Mentions: 1
Published: almost 8 years ago
10.1155/2016/7945848
Targeting Endothelial Adhesion Molecule Transcription for Treatment of Inflammatory Disease: A Proof-of-Concept Study
Cited by: 12
Author(s): Liam M. Ashander, Binoy Appukuttan, Yuefang Ma, Dione Gardner-Stephen, Justine R. Smith
Software Mentions: 1
Published: almost 9 years ago
10.1097/MD.0000000000021195
Identification of Target Genes in Hypertension and Left Ventricular Remodeling
Cited by: 12
Author(s): Bo Pang, Cong Hu, Guodong Wu, Yanli Zhang, Guangzhu Lin
Software Mentions: 1
Published: over 4 years ago
10.1186/2040-2392-4-14
Genome-wide identification of transcriptional targets of RORA reveals direct regulation of multiple genes associated with autism spectrum disorder
Cited by: 96
Author(s): Tewarit Sarachana, Valerie W. Hu
Software Mentions: 1
Published: almost 12 years ago
10.1186/2040-2392-4-39
Differential recruitment of coregulators to the RORA promoter adds another layer of complexity to gene (dys) regulation by sex hormones in autism
Cited by: 50
Author(s): Tewarit Sarachana, Valerie W. Hu
Software Mentions: 1
Published: almost 12 years ago
10.1093/molbev/msv215
Functional Analyses of Transcription Factor Binding Sites that Differ between Present-Day and Archaic Humans
Cited by: 18
Author(s): Sven Weyer, Svante Pääbo
Software Mentions: 1
Published: about 9 years ago
10.1039/c4mb00354c
Concerted bioinformatic analysis of the genome-scale blood transcription factor compendium reveals new control mechanisms
Cited by: 0
Author(s): Anagha Joshi, Berthold Göttgens
Software Mentions: 1
Published: almost 11 years ago
10.1186/s13041-016-0232-4
rAAV-compatible MiniPromoters for restricted expression in the brain and eye
Cited by: 59
Author(s): Charles N. de Leeuw, Andrea J. Korecki, Garrett E. Berry, Jack W. Hickmott, Siu Ling Lam, Tess C. Lengyell, Russell J. Bonaguro, Lisa Borretta, Vikramjit Chopra, Alice Chou, Cletus A. D’Souza, Olga Kaspieva, Stéphanie Laprise, Simone McInerny, Élodie Portales-Casamar, Magdalena I. Swanson-Newman, Kaelan Wong, George Yang, Mi Zhou, Steven J.M. Jones, Robert A. Holt, Aravind Asokan, Dan Goldowitz, Wyeth W. Wasserman, Elizabeth M. Simpson
Software Mentions: 1
Published: over 8 years ago
10.1186/s12943-019-1123-y
A novel IFNα-induced long noncoding RNA negatively regulates immunosuppression by interrupting H3K27 acetylation in head and neck squamous cell carcinoma
Cited by: 47
Author(s): Hailong Ma, Hanyue Chang, Wenyi Yang, Yusheng Lu, Jingzhou Hu, Shufang Jin
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12943-021-01412-9
CircMYH9 drives colorectal cancer growth by regulating serine metabolism and redox homeostasis in a p53-dependent manner
Cited by: 42
Author(s): Xin Liu, Yunze Liu, Zhao Liu, Changwei Lin, Fanchao Meng, Xu Liu, Xiuzhong Zhang, Chong Zhang, Penbo Zhang, Shuai Gong, Nai Wu, Zeqiang Ren, Jun Song, Yi Zhang
Software Mentions: 1
Published: about 3 years ago
10.1186/s12943-015-0431-0
Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2
Cited by: 190
Author(s): Ming Huang, Wen Ming Chen, Fuzhen Qi, Ming Sun, Tong Xu, Pei Ma, Yongqian Shu
Software Mentions: 1
Published: about 9 years ago
10.1186/s12943-017-0751-3
The Jun/miR-22/HuR regulatory axis contributes to tumourigenesis in colorectal cancer
Cited by: 90
Author(s): Yanqing Liu, Xiaorui Chen, Ruochuan Cheng, Fei Yang, Mengchao Yu, Chen Wang, Shufang Cui, Yeting Hong, Hongwei Liang, Minghui Liu, Chihao Zhao, Meng Ding, Wei Sun, Zhijian Liu, Feng Sun, Chenyu Zhang, Zhen Zhou, Xiaohong Jiang
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12943-017-0588-9
LincRNAFEZF1-AS1 represses p21 expression to promote gastric cancer proliferation through LSD1-Mediated H3K4me2 demethylation
Cited by: 129
Author(s): Yanwen Liu, Rui Xia, Kai Lǚ, Min Xie, Fen Yang, Ming Sun, Wei De, Cailian Wang, Guozhong Ji
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12943-020-01237-y
LncRNA PVT1 promotes gemcitabine resistance of pancreatic cancer via activating Wnt/β-catenin and autophagy pathway through modulating the miR-619-5p/Pygo2 and miR-619-5p/ATG14 axes
Cited by: 202
Author(s): Cefan Zhou, Changhua Yi, Yongxiang Yi, Wenying Qin, Yanan Yan, Xueying Dong, Xuewen Zhang, Yuan Huang, Rui Zhang, Jie Wei, Declan W. Ali, Marek Michalak, Xing-Zhen Chen, Jingfeng Tang
Software Mentions: 1
Published: over 4 years ago
10.1186/s12943-018-0758-4
Paracrine and epigenetic control of CAF-induced metastasis: the role of HOTAIR stimulated by TGF-ß1 secretion
Cited by: 133
Author(s): Yu Ren, Huanhuan Jia, Yanguang Xu, Xuan Zhou, Xiaohui Zhao, Yunfei Wang, Xin Song, Zhiyan Zhu, Ting Sun, Yan Dou, Wei Tian, Xiulan Zhao, Chunsheng Kang, Mei Mei
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12943-018-0830-0
Estrogen-induced miR-196a elevation promotes tumor growth and metastasis via targeting SPRED1 in breast cancer
Cited by: 66
Author(s): Cuiping Jiang, Zhumei Shi, Dongmei Li, Ying-Chen Qian, Yi Ren, Xu Bai, Yu Xie, Lin Wang, Xin Ge, Weitao Liu, Linlin Zhen, Lingzhi Liu, Bing‐Hua Jiang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12943-020-01256-9
Characterization of a novel HDAC/RXR/HtrA1 signaling axis as a novel target to overcome cisplatin resistance in human non-small cell lung cancer
Cited by: 38
Author(s): Wenjing Wang, Mingming Zhao, Lijuan Cui, Yong Ren, Jingyuan Zhang, Junli Chen, Lei Jia, Jiayu Zhang, Jingyu Yang, Guoliang Chen, Charles R. Ashby, Chunfu Wu, Zhe‐Sheng Chen, Lihui Wang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12943-021-01394-8
Circular RNA circIKBKB promotes breast cancer bone metastasis through sustaining NF-κB/bone remodeling factors signaling
Cited by: 37
Author(s): Yinfeng Xu, Shuxia Zhang, Xinyi Liao, Man Li, Suwen Chen, Xincheng Li, Xingui Wu, Meisongzhu Yang, Miaoling Tang, Yameng Hu, Ziwen Li, Ruyuan Yu, Mao Huang, Libing Song, Jun Li
Software Mentions: 1
Published: over 3 years ago
10.1002/mgg3.652
Functional analysis of haplotypes and promoter activity at the 5′ region of the human<i>GABRB3</i>gene and associations with schizophrenia
Cited by: 1
Author(s): Yi Liu, Mei Ding, Yongping Liu, Xi‐cen Zhang, Jiaxin Xing, Jin‐feng Xuan, Xi Xia, Jun Yao, Bao‐jie Wang
Software Mentions: 1
Published: over 5 years ago
10.1002/1878-0261.12164
Insulin-like growth factor 2 expression in prostate cancer is regulated by promoter-specific methylation
Cited by: 12
Author(s): Stefan Küffer, Tobias Gutting, Djeda Belharazem, Christian Sauer, Maurice Stephan Michel, Alexander Marx, Lutz Trojan, Philipp Ströbel
Software Mentions: 1
Published: almost 7 years ago
10.1002/1878-0261.12560
A SOX9‐AS1/miR‐5590‐3p/SOX9 positive feedback loop drives tumor growth and metastasis in hepatocellular carcinoma through the Wnt/β‐catenin pathway
Cited by: 40
Author(s): Wei Zhang, Yanhui Wu, Bingwu Hou, Yadong Wang, Dongfeng Deng, Zhihao Fu, Zongquan Xu
Software Mentions: 1
Published: about 5 years ago
10.1002/1878-0261.12760
The Sp1/FOXC1/HOTTIP/LATS2/YAP/β‐catenin cascade promotes malignant and metastatic progression of osteosarcoma
Cited by: 12
Author(s): Ke Liu, Jiangdong Ni, Wenzhao Li, Baiqi Pan, Yuting Yang, Xia Qin, Jun Huang
Software Mentions: 1
Published: about 4 years ago
10.1002/1878-0261.12634
SMAD3/SP1 complex‐mediated constitutive active loop between lncRNA PCAT7 and TGF‐β signaling promotes prostate cancer bone metastasis
Cited by: 57
Author(s): Chuandong Lang, Yuhu Dai, Zhengquan Wu, Qing Yang, Shiliang He, Xin Zhang, Wei Guo, Yingrong Lai, Hong Du, Hehe Wang, Dong Ren, Xinsheng Peng
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.omtn.2019.12.020
Inhibition of CRY2 by STAT3/miRNA-7-5p Promotes Osteoblast Differentiation through Upregulation of CLOCK/BMAL1/P300 Expression
Cited by: 44
Author(s): Zhenghui Tang, Tianmin Xu, Yinghua Li, Wenchao Fei, Gong Yang, Yang Hong
Software Mentions: 1
Published: over 4 years ago
10.1016/j.omtn.2020.09.021
miR-4721, Induced by EBV-miR-BART22, Targets GSK3β to Enhance the Tumorigenic Capacity of NPC through the WNT/β-catenin Pathway
Cited by: 17
Author(s): Zibo Tang, WeiFeng Chen, Yu Xu, Xian Lin, Xiong Liu, YongHao Li, Yiyi Liu, Zhigang Luo, Zhen Liu, Weiyi Fang, Mengyang Zhao
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.omtn.2020.09.022
ATF2-Induced lncRNA GAS8-AS1 Promotes Autophagy of Thyroid Cancer Cells by Targeting the miR-187-3p/ATG5 and miR-1343-3p/ATG7 Axes
Cited by: 19
Author(s): Yuan Qin, Wei Sun, Zhihong Wang, Wenwu Dong, Liang He, Ting Zhang, Liang Shao, Hao Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.omtn.2020.08.006
STAT3-Induced lncRNA SNHG17 Exerts Oncogenic Effects on Ovarian Cancer through Regulating CDK6
Cited by: 23
Author(s): Xuefeng Pan, Zhiheng Guo, Yanyan Chen, Shaojiang Zheng, Min Peng, Yi Yang, Zhenpeng Wang
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.omtn.2021.06.002
EFNA4 promotes cell proliferation and tumor metastasis in hepatocellular carcinoma through a PIK3R2/GSK3β/β-catenin positive feedback loop
Cited by: 12
Author(s): Junhao Lin, Chunting Zeng, Jiakang Zhang, Zhenghui Song, Na Qi, Xinhui Liu, Ziyan Zhang, Aimin Li, Fengsheng Chen
Software Mentions: 1
Published: about 3 years ago
10.1016/j.omto.2021.02.002
SNHG1 knockdown upregulates miR-376a and downregulates FOXK1/Snail axis to prevent tumor growth and metastasis in HCC
Cited by: 30
Author(s): Meng Fang, Jinghua Liu, Tao Lu, Lanlan Zang, Jing Wang, Qing He, Aijin Zhou
Software Mentions: 1
Published: over 3 years ago
10.1186/s12985-018-0986-7
The polymorphisms of LCR, E6, and E7 of HPV-58 isolates in Yunnan, Southwest China
Cited by: 7
Author(s): Jing Xi, Junying Chen, Miaoling Xu, Hongjiang Yang, Songjiao Wen, Yue Pan, Xiaodan Wang, Chao Ye, Lijuan Qiu, Qiangming Sun
Software Mentions: 1
Published: over 6 years ago
10.1186/s12985-020-01349-3
Genetic variability, phylogeny and functional implication of the long control region in human papillomavirus type 16, 18 and 58 in Chengdu, China
Cited by: 6
Author(s): Lizhen Fang, Xiaojun Lin, Yasi Yang, Zhilin Song, Xianping Ding, Liping Tan, Peng Gao
Software Mentions: 1
Published: over 4 years ago
10.1080/21505594.2021.1953851
<i>Acinetobacter baumannii</i> up-regulates LncRNA-GAS5 and promotes the degradation of STX17 by blocking the activation of YY1
Cited by: 3
Author(s): Zhiyuan An, Wenyi Ding
Software Mentions: 1
Published: over 3 years ago
10.3390/v8010023
Molecular Mechanisms of White Spot Syndrome Virus Infection and Perspectives on Treatments
Cited by: 152
Author(s): Bas Verbruggen, Lisa K. Bickley, Ronny van Aerle, Kelly S. Bateman, Grant D. Stentiford, Eduarda M. Santos, Charles R. Tyler
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12957-021-02389-x
LINC01224 promotes colorectal cancer progression through targeting miR-485-5p/MYO6 axis
Cited by: 12
Author(s): Jie Gu, Liang Dong, Yun Wang, Wenjia Nie, Wencong Liu, Jian Zhao
Software Mentions: 1
Published: about 3 years ago
10.1186/1756-3305-6-364
Expression and accumulation of the two-domain odorant-binding protein AaegOBP45 in the ovaries of blood-fed Aedes aegypti
Cited by: 34
Author(s): André Luis Costa-da-Silva, Bianca Burini Kojin, Osvaldo Marinotti, Anthony A. James, Margareth Lara Capurro
Software Mentions: 1
Published: almost 11 years ago
10.1186/s13071-020-04383-w
Transcription factor FTZ-F1 regulates mosquito cuticular protein CPLCG5 conferring resistance to pyrethroids in Culex pipiens pallens
Cited by: 11
Author(s): Yang Xu, Xianghua Yang, Xiaohong Sun, Xixi Li, Zhihan Liu, Qi Yin, Lei Ma, Dan Zhou, Yan Sun, Bo Shen, Changliang Zhu
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.10289
Tnni1b-ECR183-d2, an 87 bp cardiac enhancer of zebrafish
Cited by: 3
Author(s): Yawen Zhang, Feng Wang, Fang Wu, Youhua Wang, Xu Wang, Yonghao Gui, Qiang Li
Software Mentions: 1
Published: about 4 years ago
10.14814/phy2.14229
Estrogen receptor α (ERα) indirectly induces transcription of human renal organic anion transporter 1 (OAT1)
Cited by: 8
Author(s): Anna Maria Euteneuer, Tamina Seeger-Nukpezah, Hendrik Nolte, Maja Henjaković
Software Mentions: 1
Published: about 5 years ago
10.1111/pce.13320
INDEL variation in the regulatory region of the major flowering time gene <i>LanFTc1</i> is associated with vernalization response and flowering time in narrow-leafed lupin (<i>Lupinus angustifolius</i> L.)
Cited by: 43
Author(s): Candy M. Taylor, Lars G. Kamphuis, Weilu Zhang, Gagan Garg, Jens Berger, Mahsa Mousavi‐Derazmahalleh, Philipp E. Bayer, David Edwards, Karam B. Singh, Wallace Cowling, Matthew N. Nelson
Software Mentions: 1
Published: over 6 years ago
10.1186/1746-4811-9-12
Using an ensemble of statistical metrics to quantify large sets of plant transcription factor binding sites
Cited by: 3
Author(s): Parsa Hosseini, Ivan Ovcharenko, Benjamin F. Matthews
Software Mentions: 1
Published: almost 12 years ago
10.1007/s11103-015-0308-z
A cis-regulatory module activating transcription in the suspensor contains five cis-regulatory elements
Cited by: 7
Author(s): Kelli F. Henry, Tomokazu Kawashima, Robert B. Goldberg
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pcbi.1001070
De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference
Cited by: 46
Author(s): Jens Keilwagen, Jan Grau, Ivan A. Paponov, Stefan Posch, Marc Strickert, Ivo Große
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pcbi.1005297
Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast
Cited by: 37
Author(s): Emanuel Gonçalvès, Zrinka Raguz Nakic, Mattia Zampieri, Omar Wagih, David Ochoa, Uwe Sauer, Pedro Beltrão, Julio Sáez-Rodríguez
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pcbi.1000158
Modeling ChIP Sequencing In Silico with Applications
Cited by: 77
Author(s): Zhengdong D. Zhang, Joel Rozowsky, M Snyder, Joseph T. Chang, Mark Gerstein
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pcbi.1000010
A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval
Cited by: 42
Author(s): Naomi Habib, Tommy Kaplan, Hanah Margalit, Nir Friedman
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pcbi.1002865
The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks
Cited by: 18
Author(s): Mario Pujato, Thomas MacCarthy, András Fiser, Aviv Bergman
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pcbi.1000562
Discovery of Regulatory Elements is Improved by a Discriminatory Approach
Cited by: 27
Author(s): Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pcbi.0020049
Transcription Factor Map Alignment of Promoter Regions
Cited by: 57
Author(s): Enrique Blanco, Xavier Messeguer, Temple F. Smith, Roderic Guigó
Software Mentions: 1
Published: over 18 years ago
10.1371/journal.pcbi.1000269
A Primer on Regression Methods for Decoding cis-Regulatory Logic
Cited by: 15
Author(s): Debopriya Das, Matteo Pellegrini, Joe W. Gray
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pcbi.1001037
Modeling the Evolution of Regulatory Elements by Simultaneous Detection and Alignment with Phylogenetic Pair HMMs
Cited by: 11
Author(s): William H. Majoros, Uwe Ohler
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pcbi.1003385
Navigating the Multilayered Organization of Eukaryotic Signaling: A New Trend in Data Integration
Cited by: 9
Author(s): Tapesh Santra, Walter Kölch, Boris N. Kholodenko
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pcbi.0030216
MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
Cited by: 37
Author(s): Saurabh Sinha, Xin He
Software Mentions: 1
Published: about 17 years ago
10.1371/journal.pcbi.1009376
ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation
Cited by: 6
Author(s): Ramzan Umarov, Yu Li, Takahiro Arakawa, Satoshi Takizawa, Xin Gao, Peter Arner
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pcbi.1003677
Integrating Diverse Datasets Improves Developmental Enhancer Prediction
Cited by: 146
Author(s): Genevieve D. Erwin, Nir Oksenberg, Rebecca Truty, Dennis Kostka, Karl K. Murphy, Nadav Ahituv, Katherine S. Pollard, John A. Capra
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pgen.1008058
Zebrafish Klf4 maintains the ionocyte progenitor population by regulating epidermal stem cell proliferation and lateral inhibition
Cited by: 16
Author(s): Yi-Chung Chen, Bokai Liao, Yu-Fen Lu, Yu-Hsiu Liu, Fang-Chi Hsieh, Pung‐Pung Hwang, Sheng-Ping L. Hwang
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pgen.1006137
Systems Genetic Analyses Highlight a TGFβ-FOXO3 Dependent Striatal Astrocyte Network Conserved across Species and Associated with Stress, Sleep, and Huntington’s Disease
Cited by: 21
Author(s): Joseph R. Scarpa, Peng Jiang, Bojan Losic, Ben Readhead, Vance D. Gao, Joel T. Dudley, Martha Hotz Vitaterna, Fred W. Turek, Andrew Kasarskis
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pgen.1008287
Functionalization of CD36 cardiovascular disease and expression associated variants by interdisciplinary high throughput analysis
Cited by: 9
Author(s): Namrata Madan, Andrew Ghazi, Xianguo Kong, Edward S. Chen, Chad A. Shaw, Leonard C. Edelstein
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pgen.1006617
The Zic family homologue Odd-paired regulates Alk expression in Drosophila
Cited by: 14
Author(s): Patricia Mendoza-García, Fredrik Hugosson, Mahsa Fallah, M. L. Higgins, Yohei Iwasaki, Kathrin Pfeifer, Georg Wolfstetter, Gaurav K. Varshney, Dmitry Popichenko, J. Peter Gergen, Korneel Hens, Bart Deplancke, Ruth Palmer
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pgen.1003904
Parallel Evolution of Chordate Cis-Regulatory Code for Development
Cited by: 16
Author(s): Laura Doglio, Debbie K. Goode, Maria Chiara Pelleri, Stefan Pauls, Flavia Frabetti, Sebastian M. Shimeld, Tanya Vavouri, Greg Elgar
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pgen.1006278
Evolution of New cis-Regulatory Motifs Required for Cell-Specific Gene Expression in Caenorhabditis
Cited by: 20
Author(s): Michalis Barkoulas, Amhed Missael Vargas Velazquez, Alexandre E. Peluffo, Marie‐Anne Félix
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pgen.1008538
Genomic profiling of human vascular cells identifies TWIST1 as a causal gene for common vascular diseases
Cited by: 35
Author(s): Sylvia Nürnberg, Marie Guerraty, Robert Wirka, Harish Rao, Milos Pjanic, Scott Norton, Felipe Serrano, Ljubica Perisic, Susannah Elwyn, John Pluta, Wei Zhao, Stephanie Testa, YoSon Park, Trieu Nguyen, Yi-An Ko, Ting Wang, Ulf Hedin, Sanjay Sinha, Yoseph Barash, Christopher D. Brown, Thomas Quertermous, Daniel J. Rader
Software Mentions: 1
Published: almost 5 years ago