Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: HMM

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/HMM

Hidden Markov Models
2 versions
Latest release: over 2 years ago
3 dependent packages
598 downloads last month

Papers Mentioning HMM 577

10.1016/j.jbior.2020.100782
Inositol phosphate kinases in the eukaryote landscape
Cited by: 23
Author(s): Debabrata Laha, Paloma Portela-Torres, Yann Desfougères, Adolfo Saiardi
Software Mentions: 1
Published: almost 4 years ago
10.1186/1748-7188-4-13
Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications
Cited by: 18
Author(s): Piero Fariselli, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
Software Mentions: 1
Published: about 15 years ago
10.3390/ani11040919
Metabolic and Productive Response and Grazing Behavior of Lactating Dairy Cows Supplemented with High Moisture Maize or Cracked Wheat Grazing at Two Herbage Allowances in Spring
Cited by: 1
Author(s): Verónica Merino, Lorena Leichtle, Óscar Balocchi, Francisco Lanuza, J. Parga, Rémy Delagarde, Miguel Ruiz‐Albarrán, M. Jordana Rivero, Rubén Pulido
Software Mentions: 1
Published: over 3 years ago
10.3390/ani9020036
The Hsp70 Gene Family in Boleophthalmus pectinirostris: Genome-Wide Identification and Expression Analysis under High Ammonia Stress
Cited by: 11
Author(s): Zhaochao Deng, Shanxiao Sun, Tianxiang Gao, Zhiqiang Han
Software Mentions: 1
Published: almost 6 years ago
10.1002/aps3.11300
The genome of<i>Chenopodium pallidicaule</i>: An emerging Andean super grain
Cited by: 18
Author(s): Hayley Mangelson, David E. Jarvis, Patricia Mollinedo, Oscar M. Rollano‐Peñaloza, Valeria D. Palma‐Encinas, Luz Rayda Gómez‐Pando, Eric N. Jellen, Peter J. Maughan
Software Mentions: 1
Published: about 5 years ago
10.1186/s12859-015-0479-2
A hidden Markov approach for ascertaining cSNP genotypes from RNA sequence data in the presence of allelic imbalance by exploiting linkage disequilibrium
Cited by: 2
Author(s): Juan P. Steibel, Heng Wang, Ping Zhong
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2105-7-351
MANET: tracing evolution of protein architecture in metabolic networks
Cited by: 46
Author(s): Hee Shin Kim, Jay E. Mittenthal, Gustavo Caetano‐Anollés
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2105-7-370
Automatic document classification of biological literature
Cited by: 40
Author(s): David Chen, Hans‐Michael Müller, Paul W. Sternberg
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2105-8-357
An evolutionary method for learning HMM structure: prediction of protein secondary structure
Cited by: 47
Author(s): Kyoung Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh
Software Mentions: 1
Published: about 17 years ago
10.1186/1471-2105-13-165
Re-visiting protein-centric two-tier classification of existing DNA-protein complexes
Cited by: 8
Author(s): Sony Malhotra, Ramanathan Sowdhamini
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2105-8-S7-S10
Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding
Cited by: 9
Author(s): Stephen Winters‐Hilt, Amanda L. Davis, Iftekhar Amin, Eric Morales
Software Mentions: 1
Published: about 17 years ago
10.1186/1471-2105-7-201
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Cited by: 63
Author(s): Paramvir Dehal, Jeffrey L. Boore
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2105-9-547
Prediction of regulatory elements in mammalian genomes using chromatin signatures
Cited by: 93
Author(s): Kyoung Jae Won, Iouri Chepelev, Bing Ren, Wei Wang
Software Mentions: 1
Published: almost 16 years ago
10.1186/1471-2105-10-208
OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif
Cited by: 13
Author(s): Amar Drawid, Nupur Gupta, Vijayalakshmi H. Nagaraj, Céline Gélinas, Anirvan M. Sengupta
Software Mentions: 1
Published: over 15 years ago
10.1186/1471-2105-10-185
Automated genome mining for natural products
Cited by: 214
Author(s): Michael H. T. Li, Peter M.U. Ung, James Zajkowski, Sylvie Garneau‐Tsodikova, David H. Sherman
Software Mentions: 1
Published: over 15 years ago
10.1186/1471-2105-6-7
Cited by: 118
Author(s): Pantelis G. Bagos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
Software Mentions: 1
Published: almost 20 years ago
10.1186/1471-2105-8-351
A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
Cited by: 24
Author(s): Ganesan Pugalenthi, E. K. Tang, Ponnuthurai Nagaratnam Suganthan, ‪Govindaraju Archunan, Ramanathan Sowdhamini
Software Mentions: 1
Published: about 17 years ago
10.1186/1471-2105-12-434
ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process
Cited by: 20
Author(s): Malay Kumar Basu, Jeremy D. Selengut, Daniel H. Haft
Software Mentions: 1
Published: about 13 years ago
10.1186/1471-2105-7-303
A model-based approach to selection of tag SNPs
Cited by: 23
Author(s): Pierre Nicolas, Fengzhu Sun, Lei M. Li
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2105-8-374
Statistical power of phylo-HMM for evolutionarily conserved element detection
Cited by: 11
Author(s): Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
Software Mentions: 1
Published: about 17 years ago
10.1186/1741-7007-3-7
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release
Cited by: 151
Author(s): Brian J. Haas, Jennifer Wortman, Catherine M. Ronning, Linda I. Hannick, Roger K. Smith, Rama Maiti, Agnes P. Chan, Chenglong Yu, Maryam Sharafi Farzad, Dongying Wu, Owen White, Christopher D. Town
Software Mentions: 1
Published: over 19 years ago
10.1186/1471-2407-10-460
Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast
Cited by: 46
Author(s): Lesleyann Hawthorn, Jesse Luce, Leighton C. Stein, Jenniffer Rothschild
Software Mentions: 1
Published: about 14 years ago
10.1186/s12862-018-1290-2
Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets
Cited by: 22
Author(s): Anthony K. Redmond, Daniel J. Macqueen, Helen Dooley
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2148-8-276
Relationships of Gag-pol Diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis
Cited by: 41
Author(s): Carlos Lloréns, Mario A. Fares, Andrés Moya
Software Mentions: 1
Published: almost 17 years ago
10.1186/1471-2148-12-220
Genome-wide analysis of putative peroxiredoxin in unicellular and filamentous cyanobacteria
Cited by: 20
Author(s): Hongli Cui, Yipeng Wang, Yinchu Wang, Song Qin
Software Mentions: 1
Published: about 12 years ago
10.1186/1471-2148-8-306
Evolutionary history of the UCP gene family: gene duplication and selection
Cited by: 41
Author(s): Joseph Hughes, François Criscuolo
Software Mentions: 1
Published: almost 17 years ago
10.1186/1471-2148-5-42
Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study
Cited by: 72
Author(s): Mircea Podar, Jonathan Eads, Toby H. Richardson
Software Mentions: 1
Published: over 19 years ago
10.1186/1471-2148-8-129
The repertoire of G protein-coupled receptors in the sea squirt Ciona intestinalis
Cited by: 89
Author(s): N Kamesh, Gopala Krishna Aradhyam, Narayanan Manoj
Software Mentions: 1
Published: over 16 years ago
10.1186/1471-2148-11-123
Functional specialization in nucleotide sugar transporters occurred through differentiation of the gene cluster EamA (DUF6) before the radiation of Viridiplantae
Cited by: 35
Author(s): Åke Västermark, Markus Sällman Almén, Martin W. Simmen, Robert Fredriksson, Helgi B. Schiöth
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2148-10-196
A phylogenetic survey of myotubularin genes of eukaryotes: distribution, protein structure, evolution, and gene expression
Cited by: 16
Author(s): David Kerk, Greg B. G. Moorhead
Software Mentions: 1
Published: almost 15 years ago
10.1186/s12862-019-1350-2
Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences
Cited by: 76
Author(s): Arnaud Di Franco, Raphaël Poujol, Denis Baurain, Hervé Piégay
Software Mentions: 1
Published: almost 6 years ago
10.1186/1471-2148-9-77
Amphioxus encodes the largest known family of green fluorescent proteins, which have diversified into distinct functional classes
Cited by: 43
Author(s): E.K. Bomati, Gerard Manning, Dimitri D. Deheyn
Software Mentions: 1
Published: over 15 years ago
10.1186/s12863-018-0666-z
Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening
Cited by: 20
Author(s): Christine A. Hackett, Linda Milne, Kay Smith, Pete E. Hedley, Jenny Morris, Craig G. Simpson, Katharine Preedy, Julie Graham
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2164-14-503
Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics
Cited by: 21
Author(s): Jesse A. Port, Micaela S. Parker, Robin Kodner, James C. Wallace, E. Virginia Armbrust, Elaine M. Faustman
Software Mentions: 1
Published: over 11 years ago
10.1186/s12864-017-3844-x
Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization
Cited by: 49
Author(s): Jingyin Yu, Fan Hu, Komivi Dossa, Zhaokai Wang, Ke Tao
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2164-12-471
Genome-wide analysis of WRKY gene family in Cucumis sativus
Cited by: 226
Author(s): Jian Ling, Weijie Jiang, Ying Zhang, Hongjun Yu, Zhenchuan Mao, Xingfang Gu, Sanwen Huang, Bingyan Xie
Software Mentions: 1
Published: about 13 years ago
10.1186/s12864-020-6689-7
Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress
Cited by: 62
Author(s): Jiaxin Jin, Zhan Qi Wang, Qi He, Jia Yi Wang, Peng Fei Li, Ji Xu, Shao Jian Zheng, Wei Fan, Jian Yang
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-8-471
AphanoDB: a genomic resource for Aphanomyces pathogens
Cited by: 33
Author(s): Mohammed‐Amin Madoui, Elodie Gaulin, Catherine Mathé, Hélène San Clemente, Arnaud Couloux, Patrick Wincker, Bernard Dumas
Software Mentions: 1
Published: almost 17 years ago
10.1186/1471-2164-13-668
Rapid transcriptome characterization and parsing of sequences in a non-model host-pathogen interaction; pea-Sclerotinia sclerotiorum
Cited by: 27
Author(s): Xiaoxi Zhuang, Kevin McPhee, Tristan E. Coram, Tobin L. Peever, Martin I. Chilvers
Software Mentions: 1
Published: almost 12 years ago
10.1186/1471-2164-6-144
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
Cited by: 103
Author(s): Nathalie Pavy, Charles Paule, Lee S. Parsons, John A. Crow, Marie Josee Morency, Janice E. K. Cooke, James E. Johnson, Etienne Noumen, Carine Guillet-Claude, Yaron S.N. Butterfield, Sarah Barber, George Yang, Jerry Liu, Jeff Stott, Robert B. Kirkpatrick, Asim Siddiqui, Robert A. Holt, Marco A. Marra, Armand Séguin, Ernest F. Retzel, Jean Bousquet, John Mackay
Software Mentions: 1
Published: about 19 years ago
10.1186/1471-2164-11-680
A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production
Cited by: 101
Author(s): James B. McKinlay, Maris Laivenieks, Bryan D. Schindler, Anastasia McKinlay, Shivakumara Siddaramappa, Jean F. Challacombe, Stephen R. Lowry, Alicia Clum, Alla Lapidus, Kirk B. Burkhart, Victoria Harkins, Claire Vieille
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2164-6-39
A novel firmicute protein family related to the actinobacterial resuscitation-promoting factors by non-orthologous domain displacement
Cited by: 68
Author(s): Adriana Ravagnani, Christopher L. Finan, Michael Young
Software Mentions: 1
Published: over 19 years ago
10.1186/s12864-015-2092-1
A bioinformatic survey of RNA-binding proteins in Plasmodium
Cited by: 62
Author(s): BP Niranjan Reddy, Sony Shrestha, Kevin J. Hart, Xiaoying Liang, Karen Kemirembe, Liwang Cui, Scott E. Lindner
Software Mentions: 1
Published: about 9 years ago
10.1186/1471-2164-9-314
A preliminary analysis of genome structure and composition in Gossypium hirsutum
Cited by: 107
Author(s): Wangzhen Guo, Caiping Cai, Changbiao Wang, Liang Zhao, Lei Wang, Tianzhen Zhang
Software Mentions: 1
Published: over 16 years ago
10.1186/1471-2164-7-21
The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum
Cited by: 110
Author(s): Iris Brune, Hendrikje Werner, Andrea T. Hüser, Jörn Kalinowski, Alfred Pühler, Andreas Tauch
Software Mentions: 1
Published: almost 19 years ago
10.1186/1471-2164-11-628
Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria
Cited by: 22
Author(s): Jurica Žučko, Walter C. Dunlap, J. Malcolm Shick, John Cullum, François Cercelet, Bijal Amin, Lena Hammen, Tze Kin Lau, Jamal Williams, Daslav Hranueli, Paul F. Long
Software Mentions: 1
Published: about 14 years ago
10.1186/1471-2164-11-36
The proteolytic system of lactic acid bacteria revisited: a genomic comparison
Cited by: 260
Author(s): Mengjin Liu, Jumamurat R. Bayjanov, Bernadet Renckens, Arjen Nauta, Roland J. Siezen
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2164-15-203
Transcriptome profiling of the cold response and signaling pathways in Lilium lancifolium
Cited by: 76
Author(s): Jingmao Wang, Yang Yang, Xiaohua Liu, Jie Huang, Qing Wang, Jiahui Gu, Yingzhi Lu
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2164-8-201
Prevalence of the EH1 Groucho interaction motif in the metazoan Fox family of transcriptional regulators
Cited by: 36
Author(s): Sergey Yaklichkin, Alexander Vekker, Steven E. Stayrook, Mitchell Lewis, Daniel S. Kessler
Software Mentions: 1
Published: over 17 years ago
10.1186/1471-2164-15-26
Genomic comparison of sporeforming bacilli isolated from milk
Cited by: 22
Author(s): Andrea I. Moreno Switt, Alexis D. Andrus, M.L. Ranieri, Renato H. Orsi, Reid A. Ivy, Henk C. den Bakker, N.H. Martin, Martin Wiedmann, Kathryn J. Boor
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12864-018-4955-8
Genome-wide identification and characterization of the 14–3-3 family in Vitis vinifera L. during berry development and cold- and heat-stress response
Cited by: 36
Author(s): Cheng Cheng, Yi Wang, Fengmei Chai, Shaohua Li, H. P. Xin, Zhenchang Liang
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2164-9-279
Transcriptome analysis of Loxosceles laeta (Araneae, Sicariidae) spider venomous gland using expressed sequence tags
Cited by: 110
Author(s): Matheus de Freitas Fernandes-Pedrosa, Inácio L.M. Junqueira-de-Azevedo, Rute M. Gonçalves-de-Andrade, Leonardo Setsuo Kobashi, Diego Dantas Almeida, Paulo Lee Ho, Denise V. Tambourgi
Software Mentions: 1
Published: over 16 years ago
10.1186/s12864-017-4033-7
Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA
Cited by: 26
Author(s): Arturo Magana-Mora, Manal Kalkatawi, Vladimir B. Bajic
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-018-4733-7
Valine-glutamine (VQ) motif coding genes are ancient and non-plant-specific with comprehensive expression regulation by various biotic and abiotic stresses
Cited by: 33
Author(s): Shu‐Ye Jiang, Mayalagu Sevugan, Srinivasan Ramachandran
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-015-1621-2
Genome-wide identification of MAPK, MAPKK, and MAPKKK gene families and transcriptional profiling analysis during development and stress response in cucumber
Cited by: 106
Author(s): Jie Wang, Changtian Pan, Yan Wang, Lei Ye, Jian Wu, Lifei Chen, Tong Zou, Gang Lü
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2164-12-596
The repertoire of G protein-coupled receptors in the human parasite Schistosoma mansoni and the model organism Schmidtea mediterranea
Cited by: 71
Author(s): Mostafa Zamanian, Michael J. Kimber, Paul McVeigh, Steve A. Carlson, Aaron G. Maule, Tim A. Day
Software Mentions: 1
Published: almost 13 years ago
10.1186/1472-6963-13-276
Self-reported occupational exposure to HIV and factors influencing its management practice: a study of healthcare workers in Tumbi and Dodoma Hospitals, Tanzania
Cited by: 19
Author(s): Kijakazi Obed Mashoto, Godfrey M. Mubyazi, Hussein Mohamed, Hamisi M. Malebo
Software Mentions: 1
Published: over 11 years ago
10.1186/1471-2180-11-87
The chlamydial periplasmic stress response serine protease cHtrA is secreted into host cell cytosol
Cited by: 54
Author(s): Xiang Wu, Lei Lei, Siqi Gong, Ding Chen, Rhonda Flores, Guangming Zhong
Software Mentions: 1
Published: over 13 years ago
10.1186/s12886-021-01801-0
Ultrastructural study of closed macular hole- preliminary application of a novel high magnification module combining with OCT
Cited by: 0
Author(s): Changyu Qiu, Yuanyuan Shi, Hongwei Zhao, Chuang Nie, Mei Dong, Huaiqiang Zhang, Jun Zhao, Qianqian Xu, Feilong Song, Xiao-Hua Guo, Lin Shi, Changying Liu, Yu-Bo Gong, Ling Luo
Software Mentions: 1
Published: over 3 years ago
10.1186/1472-6793-14-1
Kcnq 1-5 (Kv7.1-5) potassium channel expression in the adult zebrafish
Cited by: 26
Author(s): Calvin Wu, Kiran Sharma, Kyle Vaughn Laster, Mohamed Hersi, Christina Torres‐Rouff, Thomas J. Lukas, Ernest J. Moore
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12870-019-2181-4
The evolutionary history of the sucrose synthase gene family in higher plants
Cited by: 29
Author(s): Xiaoyang Xu, Yongheng Yang, Chunxiao Liu, Yuming Sun, Ting Zhang, Menglan Hou, Shihua Huang, Yuan Huang
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12870-017-1099-y
Genome-wide analysis of WRKY gene family in the sesame genome and identification of the WRKY genes involved in responses to abiotic stresses
Cited by: 82
Author(s): Donghua Li, Pan Liu, Jingyin Yu, Linhai Wang, Komivi Dossa, Yanxin Zhang, Rong Zhou, Xin Wei
Software Mentions: 1
Published: about 7 years ago
10.1186/s12870-015-0536-z
Tomato Sl3-MMP, a member of the Matrix metalloproteinase family, is required for disease resistance against Botrytis cinerea and Pseudomonas syringae pv. tomato DC3000
Cited by: 25
Author(s): Dayong Li, Huijuan Zhang, Qiuming Song, Lu Wang, Shixia Liu, Yongbo Hong, Lei Huang, Fengming Song
Software Mentions: 1
Published: over 9 years ago
10.1186/1756-0500-4-52
Spliceosomal intron size expansion in domesticated grapevine (Vitis vinifera)
Cited by: 15
Author(s): Ke Jiang, Leslie R. Goertzen
Software Mentions: 1
Published: over 13 years ago
10.1186/s13104-017-2429-8
The discovery of novel LPMO families with a new Hidden Markov model
Cited by: 21
Author(s): Gerben P. Voshol, Erik Vijgenboom, Peter J. Punt
Software Mentions: 1
Published: over 7 years ago
10.1186/1472-6807-6-23
Cited by: 19
Author(s): Habibah A. Wahab, Nurul Bahiyah Ahmad Khairudin, Mohammed Razip Samian, Nazalan Najimudin
Software Mentions: 1
Published: almost 19 years ago
10.1186/1472-6807-12-25
In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex
Cited by: 24
Author(s): Lorena Novoa‐Aponte, Andrés León-Torres, Miyer Patiño-Ruiz, Jenifer Cuesta-Bernal, Luz-Mary Salazar, David Landsman, Leonardo Mariño-Ramírez, Carlos-Yesid Soto
Software Mentions: 1
Published: about 12 years ago
10.1186/1472-6807-13-28
The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases
Cited by: 12
Author(s): Jan Zarzycki, Cheryl A. Kerfeld
Software Mentions: 1
Published: almost 12 years ago
10.1186/1752-0509-1-15
Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes
Cited by: 53
Author(s): Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson
Software Mentions: 1
Published: over 17 years ago
10.3758/s13428-017-0876-8
Scanpath modeling and classification with hidden Markov models
Cited by: 74
Author(s): Antoine Coutrot, Janet H. Hsiao, Antoni B. Chan
Software Mentions: 1
Published: over 7 years ago
10.1186/1756-0381-6-20
Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies
Cited by: 0
Author(s): Eshita Mutt, Sudha Sane Rani, Ramanathan Sowdhamini
Software Mentions: 1
Published: about 11 years ago
10.1093/bioinformatics/bty095
Improved genomic island predictions with IslandPath-DIMOB
Cited by: 80
Author(s): Claire Bertelli, Fiona S. L. Brinkman
Software Mentions: 1
Published: over 6 years ago
10.1186/s13062-016-0106-9
BLAST-based structural annotation of protein residues using Protein Data Bank
Cited by: 12
Author(s): Harinder Singh, Gajendra P. S. Raghava
Software Mentions: 1
Published: almost 9 years ago
10.1186/1745-6150-2-31
Evaluating the protein coding potential of exonized transposable element sequences
Cited by: 41
Author(s): Jittima Piriyapongsa, Mark T. Rutledge, Sanil Patel, Mark Borodovsky, I. King Jordan
Software Mentions: 1
Published: almost 17 years ago
10.1242/bio.038331
n-3 PUFA biosynthesis by the copepod <i>Apocyclops royi</i> determined by fatty acid profile and gene expression analysis
Cited by: 33
Author(s): Signe Holm Nielsen, Louise Gøtterup, Tue Sparholt Jørgensen, Benni Winding Hansen, Lars Hestbjerg Hansen, John Mortensen, Per Meyer Jepsen
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12938-019-0638-1
Analyzing temporal dynamics of cell deformation and intracellular movement with video feature aggregation
Cited by: 2
Author(s): Fengqian Pang, Zhiwen Liu
Software Mentions: 1
Published: over 5 years ago
10.1155/2013/264532
A Novel Framework for the Identification and Analysis of Duplicons between Human and Chimpanzee
Cited by: 0
Author(s): Trees‐Juen Chuang, Shian-Zu Wu, Yao‐Ting Huang
Software Mentions: 1
Published: almost 12 years ago
10.3390/biom9030114
Spontaneous Switching among Conformational Ensembles in Intrinsically Disordered Proteins
Cited by: 39
Author(s): Ucheor B. Choi, Hugo Sanabria, Tatyana I. Smirnova, Mark E. Bowen, Keith Weninger
Software Mentions: 1
Published: over 5 years ago
10.3390/biom10121611
Sequence Features of Mitochondrial Transporter Protein Families
Cited by: 19
Author(s): Gergely Gyimesi, Matthias A. Hediger
Software Mentions: 1
Published: almost 4 years ago
10.1042/BSR20130049
Analysis of the Sam50 translocase of Excavate organisms supports evolution of divergent organelles from a common endosymbiotic event
Cited by: 2
Author(s): Chris Kay, Karen Lawler, Ian D. Kerr
Software Mentions: 1
Published: almost 11 years ago
10.1186/1475-2875-6-134
Impact of home-based management of malaria on health outcomes in Africa: a systematic review of the evidence
Cited by: 110
Author(s): Heidi Hopkins, Ambrose Talisuna, Christopher J M Whitty, Sarah G. Staedke
Software Mentions: 1
Published: about 17 years ago
10.1186/s12936-018-2630-9
Caregiver responses and association with delayed care-seeking in children with uncomplicated and severe malaria
Cited by: 8
Author(s): Arthur Mpimbaza, Anne Katahoire, Philip J. Rosenthal, Charles Karamagi, Grace Ndeezi
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12936-017-1836-6
Impact of home-based management on malaria outcome in under-fives presenting in a tertiary health institution in Nigeria
Cited by: 8
Author(s): DU Nwaneri, AE Sadoh, Michael O. Ibadin
Software Mentions: 1
Published: over 7 years ago
10.1186/1475-2875-7-46
A highly conserved segmental duplication in the subtelomeres of Plasmodium falciparum chromosomes varies in copy number
Cited by: 15
Author(s): Bobo Wing-Yee Mok, Ulf Ribacke, Ellen Sherwood, Mats Wahlgren
Software Mentions: 1
Published: over 16 years ago
10.1186/1475-2875-10-159
Relative costs and effectiveness of treating uncomplicated malaria in two rural districts in Zambia: implications for nationwide scale-up of home-based management
Cited by: 53
Author(s): Pascalina Chanda, Busiku Hamainza, Hawela Moonga, Victor Chalwe, Patrick Banda, Franco Pagnoni
Software Mentions: 1
Published: over 13 years ago
10.1186/1475-2875-11-341
Finding parasites and finding challenges: improved diagnostic access and trends in reported malaria and anti-malarial drug use in Livingstone district, Zambia
Cited by: 15
Author(s): Freddie Masaninga, Masela Sekeseke-Chinyama, Thindo Malambo, Hawela Moonga, Olusegun Babaniyi, Helen Counihan, David A. Bell
Software Mentions: 1
Published: about 12 years ago
10.1186/1475-2875-11-224
Accuracy of malaria rapid diagnosis test Optimal-IT® in Kinshasa, the Democratic Republic of Congo
Cited by: 18
Author(s): Hypolite Mavoko Muhindo, Gillon Ilombe, Ruth Meya, Patrick Mitashi, Albert Kutekemeni, Didier Gasigwa, Pascal Lutumba, Jean‐Pierre Van Geertruyden
Software Mentions: 1
Published: over 12 years ago
10.1186/1475-2875-7-201
Implementation of Home based management of malaria in children reduces the work load for peripheral health facilities in a rural district of Burkina Faso
Cited by: 47
Author(s): Alfred B. Tiono, Youssouf Kaboré, Abdoulaye Traoré, Nathalie Convelbo, Franco Pagnoni, Sodiomon B. Sirima
Software Mentions: 1
Published: about 16 years ago
10.1186/1475-2875-7-190
Effectiveness of artemisinin-based combination therapy used in the context of home management of malaria: A report from three study sites in sub-Saharan Africa
Cited by: 70
Author(s): IkeOluwapo O. Ajayi, Edmund Browne, Fred Bateganya, Denis Dekugmen Yar, Christian T. Happi, Catherine O. Falade, Grace O. Gbotosho, Bidemi Yusuf, Samuel Kwadwo Boateng, Kefas Mugittu, Simon Cousens, Miriam Nanyunja, Franco Pagnoni
Software Mentions: 1
Published: about 16 years ago
10.1016/j.ymeth.2020.06.007
Amyloid-β oligomerization monitored by single-molecule stepwise photobleaching
Cited by: 29
Author(s): Lara Dresser, Patrick Hunter, Fatima Yendybayeva, Alex L. Hargreaves, Jamieson A. L. Howard, Gareth J. Evans, Mark C. Leake, Steven D. Quinn
Software Mentions: 1
Published: about 3 years ago
10.1002/mbo3.917
Decreased metabolism and increased tolerance to extreme environments in <i>Staphylococcus warneri</i> during long‐term spaceflight
Cited by: 12
Author(s): Po Bai, Zhang Bin, Xian Zhao, Diangeng Li, Yi Yu, Xuelin Zhang, Bing Huang, Changting Liu
Software Mentions: 1
Published: over 5 years ago
10.1186/s40168-019-0710-x
Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes
Cited by: 67
Author(s): Nachiket P. Marathe, Fanny Berglund, Mohammad Reza Razavi, Chandan Pal, Johannes Dröge, Sharvari Amol Samant, Erik Kristiansson, D. G. Joakim Larsson
Software Mentions: 1
Published: over 5 years ago
10.3390/microorganisms9091819
Tailed Lytic Bacteriophages of Soft Rot Pectobacteriaceae
Cited by: 5
Author(s): Konstantin A. Miroshnikov, Peter Evseev, Anna A. Lukianova, А. Н. Игнатов
Software Mentions: 1
Published: about 3 years ago
10.3390/microorganisms8010121
Isolation, Genomic and Metabolomic Characterization of Streptomyces tendae VITAKN with Quorum Sensing Inhibitory Activity from Southern India
Cited by: 16
Author(s): Nabila Mohammed Ishaque, Ilia Burgsdorf, Jessie James Limlingan Malit, Subhasish Saha, Roberta Teta, Daniela Ewe, Кришнан Каннабиран, Pavel Hrouzek, Laura Steindler, Valeria Costantino, Kumar Saurav
Software Mentions: 1
Published: almost 5 years ago
10.3390/microorganisms8111707
Origin and Evolution of Studiervirinae Bacteriophages Infecting Pectobacterium: Horizontal Transfer Assists Adaptation to New Niches
Cited by: 16
Author(s): Peter Evseev, Anna A. Lukianova, Mikhail M. Shneider, Aleksei A. Korzhenkov, Eugenia N Bugaeva, Anastasia P. Kabanova, Kirill K. Miroshnikov, Eugene E. Kulikov, Stepan V. Toshchakov, А. Н. Игнатов, Konstantin A. Miroshnikov
Software Mentions: 1
Published: about 4 years ago
10.3390/microorganisms8030366
Comparative Genomic Analysis Confirms Five Genetic Populations of the Select Agent, Rathayibacter toxicus
Cited by: 2
Author(s): Jarred Yasuhara-Bell, Mohammad Arif, Grethel Y. Busot, Rachel Mann, Brendan Rodoni, James P. Stack
Software Mentions: 1
Published: over 4 years ago
10.15585/mmwr.mm7039e2
COVID-19–Related School Closures and Learning Modality Changes — United States, August 1–September 17, 2021
Cited by: 20
Author(s): Sharyn E. Parks, Nicole Zviedrite, Samantha E. Budzyn, Mark J. Panaggio, Emma Raible, Marc Papazian, Jake Magid, Faruque Ahmed, Amra Uzicanin, Lisa C. Barrios
Software Mentions: 1
Published: about 3 years ago
10.3390/molecules23030662
The Ubiquitin-Conjugating Enzyme Gene Family in Longan (Dimocarpus longan Lour.): Genome-Wide Identification and Gene Expression during Flower Induction and Abiotic Stress Responses
Cited by: 15
Author(s): Dengwei Jue, Xuelian Sang, Liqin Liu, Bo Shu, Yicheng Wang, Jianhua Xie, Chengming Liu, Shengyou Shi
Software Mentions: 1
Published: over 6 years ago
10.3390/molecules26113449
Genome-Wide Analysis of the UGT Gene Family and Identification of Flavonoids in Broussonetia papyrifera
Cited by: 10
Author(s): Fenfen Wang, Yalei Su, Naizhi Chen, Shihua Shen
Software Mentions: 1
Published: over 3 years ago
10.1186/1743-422X-9-207
Endemic bacteriophages: a cautionary tale for evaluation of bacteriophage therapy and other interventions for infection control in animals
Cited by: 26
Author(s): Andrew M. Kropinski, Erika J. Lingohr, Dianne Moyles, Shivani Ojha, Amanda Mazzocco, Yi‐Min She, Susan Bach, Erica A. Rozema, Kim Stanford, Tim A. McAllister, Roger P. Johnson
Software Mentions: 1
Published: about 12 years ago