Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: GillespieSSA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GillespieSSA

Gillespie's Stochastic Simulation Algorithm (SSA)
11 versions
Latest release: over 2 years ago
2 dependent packages
408 downloads last month

Papers Mentioning GillespieSSA 7

10.1186/s12859-019-2843-0

The Kendrick modelling platform: language abstractions and tools for epidemiology
Cited by: 6
Author(s): Thi Mai Anh Bui, Nick Papoulias, Serge Stinckwich, Mikal Ziane, Benjamín Roche
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0079345

StochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological Processes
Cited by: 77
Author(s): Timo Maarleveld, Brett G. Olivier, Frank J. Bruggeman
Software Mentions: 2
Published: almost 11 years ago

10.1186/1752-0509-9-S3-S8

Modelling non-Markovian dynamics in biochemical reactions
Cited by: 13
Author(s): Davide Chiarugi, Moreno Falaschi, Diana Hermith, Carlos Olarte, Luca Torella
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.1001793

Cecum Lymph Node Dendritic Cells Harbor Slow-Growing Bacteria Phenotypically Tolerant to Antibiotic Treatment
Cited by: 124
Author(s): Patrick Kaiser, Roland R. Regoes, Tamas Dolowschiak, Sandra Y. Wotzka, Jette Lengefeld, Emma Slack, A. Grant, Martin Ackermann, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: over 10 years ago

10.1038/srep36301

Emergence of Ebola virus disease in a french acute care setting: a simulation study based on documented inter-individual contacts
Cited by: 3
Author(s): Philippe Vanhems, Rosette Von Raesfeldt, René Écochard, Nicolas Voirin
Software Mentions: 1
Published: almost 8 years ago

10.3390/v7031189

Simple Mathematical Models Do Not Accurately Predict Early SIV Dynamics
Cited by: 17
Author(s): Cecilia Noecker, K. Aleks Schaefer, Kelly Zaccheo, Yiding Yang, Judy Day, Vitaly V. Ganusov
Software Mentions: 1
Published: over 9 years ago

10.1186/1752-0509-3-6

Analytical approximations for the amplitude and period of a relaxation oscillator
Cited by: 12
Author(s): Carmen Kut, V. Z. Golkhou, Joel S. Bader
Software Mentions: 1
Published: almost 16 years ago